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read_count in output #57

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sudeshna-ghosh opened this issue Jun 11, 2020 · 0 comments

sudeshna-ghosh commented Jun 11, 2020

I ran IDBA-UD recently. My output looks like this

scaffold_0 length_285165 read_count_39166
CGGGCCCTACCGTAGCAGCCGCTACGGTAGGGCCCGTGTCCAGT......
scaffold_1 length_297291 read_count_43258
GAGAGCGTCATCGATCATCGCGACGCAGGTTAACAGCGATTGCCGATGTTTACAACC........

I am wondering if read_count now refers to reads that aligned to a scaffold. I have seen previous discussion that 'read_count' refers to the k-mer count https://groups.google.com/forum/#!topic/hku-idba/5z696QgAooM
Thanks,

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