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Is there a limit to the amount of data processed by this software? #51

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xdli009 opened this issue Jun 25, 2019 · 0 comments
Open

Is there a limit to the amount of data processed by this software? #51

xdli009 opened this issue Jun 25, 2019 · 0 comments

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@xdli009
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xdli009 commented Jun 25, 2019

Dear Yu Peng
Thanks for your great tool for assembly the metagenomic reads. But when i assembled a large data (about 114Gb,150bp paired-end reads),I got some problems in the process.
My command is " idba_ud -r PE.fa --maxk 100 --step 10 -o idba_out/ --num_threads 32 --min_contig 200". there is a error after running ,the error is only that "terminate''.
The log is that"
number of threads 32
reads 707147590
long reads 0
extra reads 0
read_length 150
kmer 20
kmers 16309389272 17530273423

Does my data size exceed the maximum amount of data that can be assembled by this software?
Because it makes me very puzzled now, I hope you can help me.
I am looking forward to you reply.Thank you very much!
Best wishes!

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