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build-test.yaml
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name: Build and Test
on:
schedule:
- cron: 0 */24 * * *
workflow_dispatch:
pull_request:
push:
branches: [main]
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
env:
GEANT4_VERSION: 11.2.2
XERCES_VERSION: 3.2.5
CPP_STANDARD: 17
Geant4_DIR: ${{ github.workspace }}/geant4
jobs:
install-with-geant4-from-conda:
name: Install dependencies with conda
runs-on: ${{ matrix.os }}
timeout-minutes: 60
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest] # Geant4 is not available on conda for windows TODO: update this when it is
defaults:
run:
shell: bash -l {0}
steps:
- name: Setup conda
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: 3.12
- name: Install Geant4 and cmake using conda
run: |
conda install -c conda-forge cmake ninja geant4=${{ env.GEANT4_VERSION }}
- name: Install additional dependencies (Ubuntu)
if: matrix.os == 'ubuntu-latest'
run: |
conda install -c conda-forge gxx_linux-64
- name: Install additional dependencies (MacOS)
if: matrix.os == 'macos-latest'
run: |
conda install -c conda-forge clang_osx-64
- name: Print versions
run: |
conda --version
cmake --version
echo "Geant4: ${{ env.GEANT4_VERSION }}"
geant4-config --version
geant4-config --check-datasets
- name: Install datasets if missing # Shouldn't they be available after the conda install?
run: |
geant4-config --install-datasets
geant4-config --check-datasets
- name: Checkout
uses: actions/checkout@v4
- name: pip install the package from source
run: |
python -m pip install .[test]
python -c "import geant4_python_application; print(geant4_python_application.version)"
- name: Check datasets are accessible # Datasets should have been installed by the conda package, and should be accessible
run: |
python -c "import geant4_python_application as g4; g4.files.datasets.check_datasets(throw=True)"
- name: Run tests
run: |
python -m pytest -vv --reruns 3 --reruns-delay 30 --only-rerun "(?i)http|timeout|connection|socket|resolve"
build-geant4:
name: Build Geant4 on ${{ matrix.os }}
runs-on: ${{ matrix.os }}
timeout-minutes: 120
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
steps:
- name: Setup CMake
uses: lukka/[email protected]
- name: Cache Xerces-C Installation
id: cache-xerces
uses: actions/cache@v4
with:
path: ${{ github.workspace }}/xerces
key: xerces-v${{ env.XERCES_VERSION }}-cpp${{ env.CPP_STANDARD }}
- name: Build and Install Xerces-C
if: steps.cache-xerces.outputs.cache-hit != 'true'
run: |
git clone https://github.com/apache/xerces-c.git xerces-source
git -C xerces-source checkout tags/v${{ env.XERCES_VERSION }}
cmake -B xerces-build -S xerces-source -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${{ github.workspace }}/xerces -DCMAKE_CXX_STANDARD=${{ env.CPP_STANDARD }} -DBUILD_SHARED_LIBS=OFF ${{ matrix.os == 'windows-latest' && '-DCMAKE_MSVC_RUNTIME_LIBRARY=MultiThreaded -DCMAKE_CXX_FLAGS_RELEASE="/MT"' || '-G Ninja -DCMAKE_CXX_FLAGS=-fPIC -DCMAKE_C_FLAGS=-fPIC -Dnetwork-accessor=socket -Dtranscoder=iconv' }}
cmake --build xerces-build --parallel $(nproc) --config Release --target install
- name: Cache Geant4 Installation
id: cache-geant4
uses: actions/cache@v4
with:
path: ${{ env.Geant4_DIR }}
key: geant4-v${{ env.GEANT4_VERSION }}-cpp${{ env.CPP_STANDARD }}
- name: Build and Install Geant4 (without datasets)
if: steps.cache-geant4.outputs.cache-hit != 'true'
run: |
git clone https://github.com/Geant4/geant4.git ${{ github.workspace }}/geant4-source --depth 1 --branch v${{ env.GEANT4_VERSION }}
cmake -B geant4-build -S geant4-source -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=${{ env.Geant4_DIR }} -DXERCESC_ROOT_DIR=${{ github.workspace }}/xerces -DCMAKE_CXX_STANDARD=${{ env.CPP_STANDARD }} -DGEANT4_USE_GDML=ON -DGEANT4_INSTALL_EXAMPLES=OFF -DGEANT4_INSTALL_DATA=OFF -DGEANT4_BUILD_TLS_MODEL=global-dynamic -DBUILD_STATIC_LIBS=ON -DBUILD_SHARED_LIBS=OFF ${{ matrix.os == 'windows-latest' && '-DCMAKE_MSVC_RUNTIME_LIBRARY=MultiThreaded -DCMAKE_CXX_FLAGS_RELEASE="/MT"' || '-G Ninja -DCMAKE_CXX_FLAGS=-fPIC -DCMAKE_C_FLAGS=-fPIC -DGEANT4_USE_SYSTEM_EXPAT=OFF' }}
cmake --build geant4-build --parallel $(nproc) --config Release --target install
install-geant4-datasets:
name: Download Geant4 datasets for ${{ matrix.os }}
needs: [build-geant4]
runs-on: ${{ matrix.os }}
timeout-minutes: 30
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
steps:
- name: Cache Geant4 Installation
id: cache-geant4
uses: actions/cache@v4
with:
path: ${{ env.Geant4_DIR }}
key: geant4-v${{ env.GEANT4_VERSION }}-cpp${{ env.CPP_STANDARD }}
fail-on-cache-miss: true
- name: Cache Geant4 Datasets
id: cache-geant4-data
uses: actions/cache@v4
with:
path: ${{ github.workspace }}/geant4-data
key: geant4-${{ env.GEANT4_VERSION }}-data
enableCrossOsArchive: true
lookup-only: true
- name: Move Geant4 datasets (Ubuntu/MacOS)
if:
steps.cache-geant4-data.outputs.cache-hit != 'true' && matrix.os !=
'windows-latest'
shell: bash
run: |
bash ${{ env.Geant4_DIR }}/bin/geant4-config --install-datasets
bash ${{ env.Geant4_DIR }}/bin/geant4-config --check-datasets
mv ${{ env.Geant4_DIR }}/share/Geant4/data ${{ github.workspace }}/geant4-data
- name: Move Geant4 datasets (Windows)
if:
steps.cache-geant4-data.outputs.cache-hit != 'true' && matrix.os ==
'windows-latest'
shell: powershell
run: |
Get-ChildItem -Path ${{ env.Geant4_DIR }}\bin
cmd /c ${{ env.Geant4_DIR }}\bin\geant4-config.cmd --install-datasets
cmd /c ${{ env.Geant4_DIR }}\bin\geant4-config.cmd --check-datasets
Move-Item ${{ env.Geant4_DIR }}\share\Geant4\data ${{ github.workspace }}\geant4-data
build-test:
name:
Build and Test for ${{ matrix.os }} (Python ${{ matrix.python-version }})
needs: [install-geant4-datasets]
timeout-minutes: 30
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python-version:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Setup Python
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Setup CMake
uses: lukka/[email protected]
- name: Setup Windows environment variables
if: matrix.os == 'windows-latest'
shell: bash
run: |
echo "CMAKE_ARGS=-DCMAKE_MSVC_RUNTIME_LIBRARY=MultiThreaded" >> $GITHUB_ENV
- name: Cache Xerces-C Installation
id: cache-xerces
uses: actions/cache@v4
with:
path: ${{ github.workspace }}/xerces
key: xerces-v${{ env.XERCES_VERSION }}-cpp${{ env.CPP_STANDARD }}
fail-on-cache-miss: true
- name: Cache Geant4 Installation
id: cache-geant4
uses: actions/cache@v4
with:
path: ${{ env.Geant4_DIR }}
key: geant4-v${{ env.GEANT4_VERSION }}-cpp${{ env.CPP_STANDARD }}
fail-on-cache-miss: true
- name: pip install the package
run: |
python -m pip install --upgrade pip
python -m pip install .[test]
git tag
python -c "import geant4_python_application; print(geant4_python_application.version)"
# test ability to download datasets in one job and use the cache in the others
- name: Cache Geant4 Datasets
if: matrix.python-version != '3.11'
id: cache-geant4-data
uses: actions/cache@v4
with:
path: ${{ github.workspace }}/geant4-data
key: geant4-${{ env.GEANT4_VERSION }}-data
fail-on-cache-miss: true
enableCrossOsArchive: true
- name: Move Geant4 datasets (Ubuntu/MacOS)
if: matrix.python-version != '3.11' && matrix.os != 'windows-latest'
run: |
GEANT4_DATA_DIR=$(python -c "import geant4_python_application; print(geant4_python_application.data_directory())")
mkdir -p ${{ github.workspace }}/geant4-data "$GEANT4_DATA_DIR"
mv ${{ github.workspace }}/geant4-data/* "$GEANT4_DATA_DIR"
# TODO: unify this with the above
- name: Move Geant4 datasets (Windows)
if: matrix.python-version != '3.11' && matrix.os == 'windows-latest'
shell: powershell
run: |
$env:GEANT4_DATA_DIR = python -c "import geant4_python_application; print(geant4_python_application.data_directory())"
New-Item -ItemType Directory -Path "${{ github.workspace }}\geant4-data" -Force
New-Item -ItemType Directory -Path $env:GEANT4_DATA_DIR -Force
Move-Item "${{ github.workspace }}\geant4-data\*" $env:GEANT4_DATA_DIR -Force
- name: Install datasets
uses: nick-fields/retry@v3
with:
timeout_minutes: 30
retry_wait_seconds: 60
max_attempts: 5
command: |
python -c "import geant4_python_application as g4; g4.install_datasets()"
# Check that the datasets are installed correctly
python -c "import geant4_python_application as g4; g4.files.datasets.check_datasets(throw=True)"
- name: Run tests
run: |
python -m pytest -vv --reruns 3 --reruns-delay 30 --only-rerun "(?i)http|timeout|connection|socket|resolve"
- name: Run example notebooks
if: matrix.python-version == '3.12' && matrix.os == 'ubuntu-latest'
run: |
python -m pip install jupyter nbconvert matplotlib
for notebook in $(find examples -name '*.ipynb'); do
jupyter nbconvert --to notebook --execute --inplace $notebook
done