diff --git a/Manifest.toml b/Manifest.toml index 8b06495..b447264 100644 --- a/Manifest.toml +++ b/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.2" manifest_format = "2.0" -project_hash = "e0da2109747c05b0083fb18309017ed69723ca03" +project_hash = "1370b0d05823b9793864018a77107064c840de24" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -15,11 +15,6 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" -[[deps.AbstractLattices]] -git-tree-sha1 = "222ee9e50b98f51b5d78feb93dd928880df35f06" -uuid = "398f06c4-4d28-53ec-89ca-5b2656b7603d" -version = "0.3.0" - [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -35,6 +30,11 @@ weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.AdaptivePredicates]] +git-tree-sha1 = "7e651ea8d262d2d74ce75fdf47c4d63c07dba7a6" +uuid = "35492f91-a3bd-45ad-95db-fcad7dcfedb7" +version = "1.2.0" + [[deps.AliasTables]] deps = ["PtrArrays", "Random"] git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" @@ -52,10 +52,10 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "5c9b74c973181571deb6442d41e5c902e6b9f38e" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "3640d077b6dafd64ceb8fd5c1ec76f7ca53bcf76" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.12.0" +version = "7.16.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -65,6 +65,7 @@ version = "7.12.0" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -76,14 +77,15 @@ version = "7.12.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "8556500c18fcad8b4c44058e23fbc4a36143f6be" +git-tree-sha1 = "0dd7edaff278e346eb0ca07a7e75c9438408a3ce" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.10.1" +version = "1.10.3" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -105,10 +107,10 @@ uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" version = "0.1.0" [[deps.Automa]] -deps = ["PrecompileTools", "TranscodingStreams"] -git-tree-sha1 = "014bc22d6c400a7703c0f5dc1fdc302440cf88be" +deps = ["PrecompileTools", "SIMD", "TranscodingStreams"] +git-tree-sha1 = "a8f503e8e1a5f583fbef15a8440c8c7e32185df2" uuid = "67c07d97-cdcb-5c2c-af73-a7f9c32a568b" -version = "1.0.4" +version = "1.1.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -129,16 +131,16 @@ uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" version = "0.5.0" [[deps.BSplineKit]] -deps = ["ArrayLayouts", "BandedMatrices", "FastGaussQuadrature", "LinearAlgebra", "PrecompileTools", "Random", "Reexport", "SparseArrays", "Static", "StaticArrays", "StaticArraysCore"] -git-tree-sha1 = "83c03776e573af0a3909334243cb39e626eaf256" +deps = ["ArrayLayouts", "BandedMatrices", "FastGaussQuadrature", "ForwardDiff", "LinearAlgebra", "PrecompileTools", "Random", "Reexport", "SparseArrays", "Static", "StaticArrays", "StaticArraysCore"] +git-tree-sha1 = "79dba2b0d60f225f4660075cb0e9b4da9960042a" uuid = "093aae92-e908-43d7-9660-e50ee39d5a0a" -version = "0.17.3" +version = "0.17.6" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "71f605effb24081b09cae943ba39ef9ca90c04f4" +git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "1.7.2" +version = "1.7.5" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -159,15 +161,15 @@ uuid = "ad839575-38b3-5650-b840-f874b8c74a25" version = "0.12.9" [[deps.BufferedStreams]] -git-tree-sha1 = "4ae47f9a4b1dc19897d3743ff13685925c5202ec" +git-tree-sha1 = "6863c5b7fc997eadcabdbaf6c5f201dc30032643" uuid = "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d" -version = "1.2.1" +version = "1.2.2" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd" +git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+1" +version = "1.0.8+2" [[deps.CEnum]] git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" @@ -196,10 +198,10 @@ uuid = "4e9b3aee-d8a1-5a3d-ad8b-7d824db253f0" version = "1.0.1+0" [[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics"] -git-tree-sha1 = "6e945e876652f2003e6ca74e19a3c45017d3e9f6" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LLVMLoopInfo", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "StaticArrays", "Statistics", "demumble_jll"] +git-tree-sha1 = "e0725a467822697171af4dae15cec10b4fc19053" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "5.4.2" +version = "5.5.2" [deps.CUDA.extensions] ChainRulesCoreExt = "ChainRulesCore" @@ -212,46 +214,40 @@ version = "5.4.2" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "97df9d4d6be8ac6270cb8fd3b8fc413690820cbd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "ccd1e54610c222fadfd4737dac66bff786f63656" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.9.1+1" +version = "0.10.3+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] -git-tree-sha1 = "f3b237289a5a77c759b2dd5d4c2ff641d67c4030" +git-tree-sha1 = "33576c7c1b2500f8e7e6baa082e04563203b3a45" uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.3.4" +version = "0.3.5" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "afea94249b821dc754a8ca6695d3daed851e1f5a" +git-tree-sha1 = "e43727b237b2879a34391eeb81887699a26f8f2f" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.14.1+0" +version = "0.15.3+0" [[deps.Cairo]] deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"] -git-tree-sha1 = "d0b3f8b4ad16cb0a2988c6788646a5e6a17b6b1b" +git-tree-sha1 = "7b6ad8c35f4bc3bca8eb78127c8b99719506a5fb" uuid = "159f3aea-2a34-519c-b102-8c37f9878175" -version = "1.0.5" +version = "1.1.0" [[deps.CairoMakie]] -deps = ["Base64", "Cairo", "Colors", "FFTW", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools", "SHA"] -git-tree-sha1 = "5e21a254d82c64b1a4ed9dbdc7e87c5d9cf4a686" +deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] +git-tree-sha1 = "7947d2b61995eda7d5ca50c697b12bb578b918e5" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.10.12" +version = "0.12.14" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" +git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.0+2" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.2+1" [[deps.CatIndices]] deps = ["CustomUnitRanges", "OffsetArrays"] @@ -261,9 +257,9 @@ version = "0.2.2" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" +git-tree-sha1 = "3e4b134270b372f2ed4d4d0e936aabaefc1802bc" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.24.0" +version = "1.25.0" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -271,9 +267,9 @@ weakdeps = ["SparseArrays"] [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8" +git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.5" +version = "0.7.6" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -283,9 +279,9 @@ version = "0.4.0" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "4b270d6465eb21ae89b732182c20dc165f8bf9f2" +git-tree-sha1 = "b5278586822443594ff615963b0c09755771b3e0" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.25.0" +version = "3.26.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -309,11 +305,6 @@ git-tree-sha1 = "362a287c3aa50601b0bc359053d5c2468f0e7ce0" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.12.11" -[[deps.Combinatorics]] -git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" -uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" -version = "1.0.2" - [[deps.CommonDataModel]] deps = ["CFTime", "DataStructures", "Dates", "Preferences", "Printf", "Statistics"] git-tree-sha1 = "d6fb5bf939a2753c74984b11434ea25d6c397a58" @@ -321,16 +312,16 @@ uuid = "1fbeeb36-5f17-413c-809b-666fb144f157" version = "0.3.6" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -359,14 +350,14 @@ uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" version = "1.10.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "260fd2400ed2dab602a7c15cf10c1933c59930a2" +git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.5" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.5.8" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.Contour]] @@ -380,10 +371,10 @@ uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" version = "4.1.1" [[deps.CubedSphere]] -deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"] -git-tree-sha1 = "10134667d7d3569b191a65801514271b8a93b292" +deps = ["TaylorSeries"] +git-tree-sha1 = "51bb25de518b4c62b7cdf26e5fbb84601bb27a60" uuid = "7445602f-e544-4518-8976-18f8e8ae6cdb" -version = "0.2.5" +version = "0.3.0" [[deps.CustomUnitRanges]] git-tree-sha1 = "1a3f97f907e6dd8983b744d2642651bb162a3f7a" @@ -396,10 +387,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "fb61b4812c49343d7ef0b533ba982c46021938a6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.7.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] @@ -417,16 +408,10 @@ deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" [[deps.DelaunayTriangulation]] -deps = ["DataStructures", "EnumX", "ExactPredicates", "Random", "SimpleGraphs"] -git-tree-sha1 = "d4e9dc4c6106b8d44e40cd4faf8261a678552c7c" +deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "PrecompileTools", "Random"] +git-tree-sha1 = "89df54fbe66e5872d91d8c2cd3a375f660c3fd64" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" -version = "0.8.12" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" +version = "1.6.1" [[deps.Dierckx]] deps = ["Dierckx_jll"] @@ -475,9 +460,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "9c405847cc7ecda2dc921ccf18b47ca150d7317e" +git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.109" +version = "0.25.112" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -500,34 +485,17 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053" uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" version = "2.2.4+0" -[[deps.Elliptic]] -git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608" -uuid = "b305315f-e792-5b7a-8f41-49f472929428" -version = "1.0.1" - [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" -[[deps.EpollShim_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643" -uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" -version = "0.0.20230411+0" - [[deps.ErrorfreeArithmetic]] git-tree-sha1 = "d6863c556f1142a061532e79f611aa46be201686" uuid = "90fa49ef-747e-5e6f-a989-263ba693cf1a" @@ -557,15 +525,9 @@ uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" [[deps.Extents]] -git-tree-sha1 = "94997910aca72897524d2237c41eb852153b0f65" +git-tree-sha1 = "81023caa0021a41712685887db1fc03db26f41f5" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" -version = "0.1.3" - -[[deps.FFMPEG]] -deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" -uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" +version = "0.1.4" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] @@ -587,9 +549,9 @@ version = "1.8.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c6033cc3892d0ef5bb9cd29b7f2f0331ea5184ea" +git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+0" +version = "3.3.10+1" [[deps.FastGaussQuadrature]] deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] @@ -605,18 +567,35 @@ version = "0.3.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "82d8afa92ecf4b52d78d869f038ebfb881267322" +git-tree-sha1 = "62ca0547a14c57e98154423419d8a342dca75ca9" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.16.3" +version = "1.16.4" + +[[deps.FilePaths]] +deps = ["FilePathsBase", "MacroTools", "Reexport", "Requires"] +git-tree-sha1 = "919d9412dbf53a2e6fe74af62a73ceed0bce0629" +uuid = "8fc22ac5-c921-52a6-82fd-178b2807b824" +version = "0.8.3" + +[[deps.FilePathsBase]] +deps = ["Compat", "Dates"] +git-tree-sha1 = "7878ff7172a8e6beedd1dea14bd27c3c6340d361" +uuid = "48062228-2e41-5def-b9a4-89aafe57970f" +version = "0.9.22" +weakdeps = ["Mmap", "Test"] + + [deps.FilePathsBase.extensions] + FilePathsBaseMmapExt = "Mmap" + FilePathsBaseTestExt = "Test" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "0653c0a2396a6da5bc4766c43041ef5fd3efbe57" +git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.11.0" +version = "1.13.0" weakdeps = ["PDMats", "SparseArrays", "Statistics"] [deps.FillArrays.extensions] @@ -624,22 +603,6 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" -[[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" -uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" - - [deps.FiniteDiff.extensions] - FiniteDiffBandedMatricesExt = "BandedMatrices" - FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" - FiniteDiffStaticArraysExt = "StaticArrays" - - [deps.FiniteDiff.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.FixedPointNumbers]] deps = ["Statistics"] git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" @@ -657,12 +620,6 @@ git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" version = "1.3.7" -[[deps.Formatting]] -deps = ["Logging", "Printf"] -git-tree-sha1 = "fb409abab2caf118986fc597ba84b50cbaf00b87" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.3" - [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] git-tree-sha1 = "cf0fe81336da9fb90944683b8c41984b08793dad" @@ -707,29 +664,11 @@ version = "0.5.0" deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" -[[deps.GLFW]] -deps = ["GLFW_jll"] -git-tree-sha1 = "0e09f64c12edc26f55d905b2596d28fe513e0822" -uuid = "f7f18e0c-5ee9-5ccd-a5bf-e8befd85ed98" -version = "3.4.2" - -[[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "3f74912a156096bd8fdbef211eff66ab446e7297" -uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.0+0" - -[[deps.GLMakie]] -deps = ["ColorTypes", "Colors", "FileIO", "FixedPointNumbers", "FreeTypeAbstraction", "GLFW", "GeometryBasics", "LinearAlgebra", "Makie", "Markdown", "MeshIO", "ModernGL", "Observables", "PrecompileTools", "Printf", "ShaderAbstractions", "StaticArrays"] -git-tree-sha1 = "8236ce4eda9837d15bab49573bba16ba0652b486" -uuid = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a" -version = "0.8.12" - [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "04661708f5301394a1f1be86a07a89e835900db6" +git-tree-sha1 = "62ee71528cca49be797076a76bdc654a170a523e" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "10.2.3" +version = "10.3.1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -738,28 +677,21 @@ uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.1.6" [[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "518ebd058c9895de468a8c255797b0c53fdb44dd" +deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] +git-tree-sha1 = "1d6f290a5eb1201cd63574fbc4440c788d5cb38f" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.26.5" +version = "0.27.8" -[[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "ddda044ca260ee324c5fc07edb6d7cf3f0b9c350" -uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.5" - -[[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "278e5e0f820178e8a26df3184fcb2280717c79b1" -uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.5+0" +[[deps.GeoFormatTypes]] +git-tree-sha1 = "59107c179a586f0fe667024c5eb7033e81333271" +uuid = "68eda718-8dee-11e9-39e7-89f7f65f511f" +version = "0.4.2" [[deps.GeoInterface]] -deps = ["Extents"] -git-tree-sha1 = "9fff8990361d5127b770e3454488360443019bb3" +deps = ["Extents", "GeoFormatTypes"] +git-tree-sha1 = "2f6fce56cdb8373637a6614e14a5768a88450de2" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.5" +version = "1.3.7" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] @@ -775,9 +707,9 @@ version = "0.21.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "7c82e6a6cd34e9d935e9aa4051b66c6ff3af59ba" +git-tree-sha1 = "674ff0db93fffcd11a3573986e550d66cd4fd71f" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.80.2+0" +version = "2.80.5+0" [[deps.Glob]] git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" @@ -798,9 +730,9 @@ version = "1.3.14+0" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] -git-tree-sha1 = "f57a64794b336d4990d90f80b147474b869b1bc4" +git-tree-sha1 = "fc713f007cff99ff9e50accba6373624ddd33588" uuid = "3955a311-db13-416c-9275-1d80ed98e5e9" -version = "0.9.2" +version = "0.11.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -830,10 +762,10 @@ uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" version = "1.10.8" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "401e4f3f30f43af2c8478fc008da50096ea5240f" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.3.1+0" [[deps.Hiccup]] deps = ["MacroTools", "Test"] @@ -843,15 +775,15 @@ version = "0.2.2" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1d334207121865ac8c1c97eb7f42d0339e4635bf" +git-tree-sha1 = "dd3b49277ec2bb2c6b94eb1604d4d0616016f7a6" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.11.0+0" +version = "2.11.2+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "7c4195be1649ae622304031ed46a2f4df989f1eb" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.24" [[deps.IJulia]] deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] @@ -923,27 +855,23 @@ uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" [[deps.InlineStrings]] -deps = ["Parsers"] -git-tree-sha1 = "86356004f30f8e737eff143d57d41bd580e437aa" +git-tree-sha1 = "45521d31238e87ee9f9732561bfee12d4eebd52d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.1" +version = "1.4.2" [deps.InlineStrings.extensions] ArrowTypesExt = "ArrowTypes" + ParsersExt = "Parsers" [deps.InlineStrings.weakdeps] ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" - -[[deps.IntegerMathUtils]] -git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" -uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.2" + Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" [[deps.IntelOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "be50fe8df3acbffa0274a744f1a99d29c45a57f4" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.1.0+0" +version = "2024.2.1+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -1009,22 +937,16 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] -git-tree-sha1 = "84642bc18a79d715b39d3724b03cbdd2e7d48c62" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] +git-tree-sha1 = "a0746c21bdc986d0dc293efa6b1faee112c37c28" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.49" - -[[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "a53ebe394b71470c7f97c2e7e170d51df21b17af" -uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.7" +version = "0.4.53" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "be3dc50a92e5a386872a493a10050136d4703f9b" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.6.1" [[deps.JSExpr]] deps = ["JSON", "MacroTools", "Observables", "WebIO"] @@ -1038,18 +960,6 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.JSON3]] -deps = ["Dates", "Mmap", "Parsers", "PrecompileTools", "StructTypes", "UUIDs"] -git-tree-sha1 = "eb3edce0ed4fa32f75a0a11217433c31d56bd48b" -uuid = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" -version = "1.14.0" - - [deps.JSON3.extensions] - JSON3ArrowExt = ["ArrowTypes"] - - [deps.JSON3.weakdeps] - ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" - [[deps.JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] git-tree-sha1 = "fa6d0bcff8583bac20f1ffa708c3913ca605c611" @@ -1058,9 +968,9 @@ version = "0.1.5" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c84a835e1a09b289ffcd2271bf2a337bbdda6637" +git-tree-sha1 = "25ee0be4d43d0269027024d75a24c24d6c6e590c" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.0.3+0" +version = "3.0.4+0" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1068,23 +978,21 @@ git-tree-sha1 = "af433a10f3942e882d3c671aacb203e006a5808f" uuid = "9c1d0b0a-7046-5b2e-a33f-ea22f176ac7e" version = "0.2.1+0" -[[deps.Kaleido_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "43032da5832754f58d14a91ffbe86d5f176acda9" -uuid = "f7e6163d-2fa5-5f23-b69c-1db539e41963" -version = "0.2.1+0" - [[deps.KernelAbstractions]] -deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec" +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "04e52f596d0871fa3890170fa79cb15e481e4cd8" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.22" +version = "0.9.28" [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" [deps.KernelAbstractions.weakdeps] EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] @@ -1098,17 +1006,11 @@ git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.2+0" -[[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" -uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" - [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "389aea28d882a40b5e1747069af71bdbd47a1cae" +git-tree-sha1 = "4ad43cb0a4bb5e5b1506e1d1f48646d7e0c80363" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "7.2.1" +version = "9.1.2" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -1116,9 +1018,9 @@ weakdeps = ["BFloat16s"] [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.29+0" +version = "0.0.34+0" [[deps.LLVMLoopInfo]] git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" @@ -1127,9 +1029,9 @@ version = "1.0.0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d986ce2d884d49126836ea94ed5bfb0f12679713" +git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.7+0" +version = "18.1.7+0" [[deps.LRUCache]] git-tree-sha1 = "b3cc6698599b10e652832c2f23db3cab99d51b59" @@ -1142,28 +1044,14 @@ weakdeps = ["Serialization"] [[deps.LZO_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "70c5da094887fd2cae843b8db33920bac4b6f07d" +git-tree-sha1 = "854a9c268c43b77b0a27f22d7fab8d33cdb3a731" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.2+0" +version = "2.10.2+1" [[deps.LaTeXStrings]] -git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec" +git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.1" - -[[deps.Latexify]] -deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "5b0d630f3020b82c0775a51d05895852f8506f50" -uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.4" - - [deps.Latexify.extensions] - DataFramesExt = "DataFrames" - SymEngineExt = "SymEngine" - - [deps.Latexify.weakdeps] - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" +version = "1.4.0" [[deps.Lazy]] deps = ["MacroTools"] @@ -1219,12 +1107,6 @@ git-tree-sha1 = "9fd170c4bbfd8b935fdc5f8b7aa33532c991a673" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" version = "1.8.11+0" -[[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" -uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - [[deps.Libgpg_error_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "fbb1f2bef882392312feb1ede3615ddc1e9b99ed" @@ -1243,40 +1125,16 @@ git-tree-sha1 = "0c4f9c4f1a50d8f35048fa0532dabbadf702f81e" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" version = "2.40.1+0" -[[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" -uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" - [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "5ee6203157c120d79034c748a2acba45b82b8807" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.40.1+0" -[[deps.LightXML]] -deps = ["Libdl", "XML2_jll"] -git-tree-sha1 = "3a994404d3f6709610701c7dabfc03fed87a81f8" -uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179" -version = "0.9.1" - -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" - [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -[[deps.LinearAlgebraX]] -deps = ["LinearAlgebra", "Mods", "Primes", "SimplePolynomials"] -git-tree-sha1 = "d76cec8007ec123c2b681269d40f94b053473fcf" -uuid = "9b3f67b0-2d00-526e-9884-9e4938f8fb88" -version = "0.2.7" - [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] git-tree-sha1 = "a2d09619db4e765091ee5c6ffe8872849de0feea" @@ -1310,15 +1168,15 @@ version = "0.10.7" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "80b2833b56d466b3858d565adcd16a4a05f2089b" +git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.1.0+0" +version = "2024.2.0+0" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "b4d8707e42b693720b54f0b3434abee6dd4d947a" +git-tree-sha1 = "892676019c58f34e38743bc989b0eca5bce5edc5" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.16" +version = "0.20.22" [deps.MPI.extensions] AMDGPUExt = "AMDGPU" @@ -1330,9 +1188,9 @@ version = "0.20.16" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "4099bb6809ac109bfc17d521dad33763bcf026b7" +git-tree-sha1 = "7715e65c47ba3941c502bffb7f266a41a7f54423" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.2.1+1" +version = "4.2.3+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] @@ -1342,9 +1200,9 @@ version = "0.1.11" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "8c35d5420193841b2f367e658540e8d9e0601ed0" +git-tree-sha1 = "70e830dab5d0775183c99fc75e4c24c614ed7142" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.4.0+0" +version = "5.5.1+0" [[deps.MacroTools]] deps = ["Markdown", "Random"] @@ -1353,16 +1211,16 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.13" [[deps.Makie]] -deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "35fa3c150cd96fd77417a23965b7037b90d6ffc9" +deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] +git-tree-sha1 = "3df66da15ba7b37b34f6557b7e1c95a3ff5c670b" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.19.12" +version = "0.21.14" [[deps.MakieCore]] -deps = ["Observables", "REPL"] -git-tree-sha1 = "9b11acd07f21c4d035bd4156e789532e8ee2cc70" +deps = ["ColorTypes", "GeometryBasics", "IntervalSets", "Observables"] +git-tree-sha1 = "4604f03e5b057e8e62a95a44929cafc9585b0fe9" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.6.9" +version = "0.8.9" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1375,9 +1233,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] -git-tree-sha1 = "96ca8a313eb6437db5ffe946c457a401bbb8ce1d" +git-tree-sha1 = "e1641f32ae592e415e3dbae7f4a188b5316d4b62" uuid = "0a4f8689-d25c-4efe-a92b-7142dfc1aa53" -version = "0.5.7" +version = "0.6.1" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -1390,17 +1248,6 @@ deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" version = "2.28.2+1" -[[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" -uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MeshIO]] -deps = ["ColorTypes", "FileIO", "GeometryBasics", "Printf"] -git-tree-sha1 = "dc182956229ff16d5a4d90a562035e633bd2561d" -uuid = "7269a6da-0436-5bbc-96c2-40638cbb6118" -version = "0.4.12" - [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "f12a29c4400ba812841c6ace3f4efbb6dbb3ba01" @@ -1416,17 +1263,6 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" -[[deps.ModernGL]] -deps = ["Libdl"] -git-tree-sha1 = "b76ea40b5c0f45790ae09492712dd326208c28b2" -uuid = "66fc600b-dfda-50eb-8b99-91cfa97b1301" -version = "1.1.7" - -[[deps.Mods]] -git-tree-sha1 = "924f962b524a71eef7a21dae1e6853817f9b658f" -uuid = "7475f97c-0381-53b1-977b-4c60186c8d62" -version = "2.2.4" - [[deps.MosaicViews]] deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe" @@ -1437,16 +1273,11 @@ version = "0.3.4" uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2023.1.10" -[[deps.Multisets]] -git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e" -uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09" -version = "0.4.4" - [[deps.Mustache]] deps = ["Printf", "Tables"] -git-tree-sha1 = "a7cefa21a2ff993bff0456bf7521f46fc077ddf1" +git-tree-sha1 = "3b2db451a872b20519ebb0cec759d3d81a1c6bcb" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" -version = "1.0.19" +version = "1.0.20" [[deps.Mux]] deps = ["AssetRegistry", "Base64", "HTTP", "Hiccup", "MbedTLS", "Pkg", "Sockets"] @@ -1456,15 +1287,9 @@ version = "1.0.2" [[deps.NCDatasets]] deps = ["CFTime", "CommonDataModel", "DataStructures", "Dates", "DiskArrays", "NetCDF_jll", "NetworkOptions", "Printf"] -git-tree-sha1 = "a640912695952b074672edb5f9aaee2f7f9fd59a" +git-tree-sha1 = "77df6d3708ec0eb3441551e1f20f7503b37c2393" uuid = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" -version = "0.14.4" - -[[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" +version = "0.14.5" [[deps.NVTX]] deps = ["Colors", "JuliaNVTXCallbacks_jll", "Libdl", "NVTX_jll"] @@ -1486,9 +1311,9 @@ version = "1.0.2" [[deps.NaNStatistics]] deps = ["PrecompileTools", "Static", "StaticArrayInterface"] -git-tree-sha1 = "643573fb1771d2ae140b775c18e4278578051c03" +git-tree-sha1 = "d86d1c878cdab73ec06da5eb348967992879507f" uuid = "b946abbf-3ea7-4610-9019-9858bfdeaf2d" -version = "0.6.41" +version = "0.6.42" [[deps.NetCDF_jll]] deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Pkg", "XML2_jll", "Zlib_jll"] @@ -1512,24 +1337,27 @@ uuid = "510215fc-4207-5dde-b226-833fc4488ee2" version = "0.5.5" [[deps.Oceananigans]] -deps = ["Adapt", "CUDA", "Crayons", "CubedSphere", "Dates", "Distances", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "PencilArrays", "PencilFFTs", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "38d13641d7c87905051ccf730c79ccd483281135" -repo-rev = "fix-initialization" -repo-url = "../Oceananigans.jl" +deps = ["Adapt", "CUDA", "Crayons", "CubedSphere", "Dates", "Distances", "DocStringExtensions", "FFTW", "Glob", "IncompleteLU", "InteractiveUtils", "IterativeSolvers", "JLD2", "KernelAbstractions", "LinearAlgebra", "Logging", "MPI", "NCDatasets", "OffsetArrays", "OrderedCollections", "Pkg", "Printf", "Random", "Rotations", "SeawaterPolynomials", "SparseArrays", "Statistics", "StructArrays"] +git-tree-sha1 = "06bbb8bd3f6ce180020aaef6867d2e6cec9a30f0" +repo-rev = "4897cbd4b5b6751cbe8bfea9cc60ee930dde41f4" +repo-url = "https://github.com/liuchihl/Oceananigans.jl" uuid = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09" -version = "0.91.5" +version = "0.92.2" [deps.Oceananigans.extensions] OceananigansEnzymeExt = "Enzyme" + OceananigansMakieExt = ["MakieCore", "Makie"] [deps.Oceananigans.weakdeps] Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" [[deps.Oceanostics]] deps = ["DocStringExtensions", "Oceananigans", "Printf", "SeawaterPolynomials"] -git-tree-sha1 = "14415188022173b53a29753d6727ea489520d302" +git-tree-sha1 = "3f1e1edb7341a0041756a61a7d3f2cce1a7db543" uuid = "d0ccf422-c8fb-49b5-a76d-74acdde946ac" -version = "0.14.2" +version = "0.14.3" [[deps.OffsetArrays]] git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e" @@ -1570,9 +1398,9 @@ version = "0.8.1+2" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] -git-tree-sha1 = "a9de2f1fc98b92f8856c640bf4aec1ac9b2a0d86" +git-tree-sha1 = "bfce6d523861a6c562721b262c0d1aaeead2647f" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "5.0.3+0" +version = "5.0.5+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1582,9 +1410,9 @@ version = "1.4.3" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a12e56c72edee3ce6b96667745e6cbbe5498f200" +git-tree-sha1 = "ad31332567b189f508a3ea8957a2640b1147ab00" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.23+0" +version = "1.1.23+1" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1592,23 +1420,11 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" -[[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89" -uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.9.4" - - [deps.Optim.extensions] - OptimMOIExt = "MathOptInterface" - - [deps.Optim.weakdeps] - MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" - [[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" +version = "1.3.3+0" [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" @@ -1632,12 +1448,6 @@ git-tree-sha1 = "67186a2bc9a90f9f85ff3cc8277868961fb57cbd" uuid = "f57f5aa1-a3ce-4bc8-8ab9-96f992907883" version = "0.4.3" -[[deps.PackageExtensionCompat]] -git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" -uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" -version = "1.0.2" -weakdeps = ["Requires", "TOML"] - [[deps.Packing]] deps = ["GeometryBasics"] git-tree-sha1 = "ec3edfe723df33528e085e632414499f26650501" @@ -1652,15 +1462,9 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "cb5a2ab6763464ae0f19c86c56c63d4a2b0f5bda" +git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.52.2+0" - -[[deps.Parameters]] -deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.3" +version = "1.54.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] @@ -1668,51 +1472,12 @@ git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.8.1" -[[deps.PencilArrays]] -deps = ["Adapt", "JSON3", "LinearAlgebra", "MPI", "OffsetArrays", "Random", "Reexport", "StaticArrayInterface", "StaticArrays", "StaticPermutations", "Strided", "TimerOutputs", "VersionParsing"] -git-tree-sha1 = "fa85ac32172d96cfdb91dbc53e8e57007e5a2b5a" -uuid = "0e08944d-e94e-41b1-9406-dcf66b6a9d2e" -version = "0.19.5" - - [deps.PencilArrays.extensions] - PencilArraysAMDGPUExt = ["AMDGPU"] - PencilArraysDiffEqExt = ["DiffEqBase"] - PencilArraysHDF5Ext = ["HDF5"] - - [deps.PencilArrays.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" - HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" - -[[deps.PencilFFTs]] -deps = ["AbstractFFTs", "FFTW", "LinearAlgebra", "MPI", "PencilArrays", "Reexport", "TimerOutputs"] -git-tree-sha1 = "bd69f3f0ee248cfb4241800aefb705b5ded592ff" -uuid = "4a48f351-57a6-4416-9ec4-c37015456aae" -version = "0.15.1" - -[[deps.Permutations]] -deps = ["Combinatorics", "LinearAlgebra", "Random"] -git-tree-sha1 = "4ca430561cf37c75964c8478eddae2d79e96ca9b" -uuid = "2ae35dd2-176d-5d53-8349-f30d82d94d4f" -version = "0.4.21" - [[deps.Pidfile]] deps = ["FileWatching", "Test"] git-tree-sha1 = "2d8aaf8ee10df53d0dfb9b8ee44ae7c04ced2b03" uuid = "fa939f87-e72e-5be4-a000-7fc836dbe307" version = "1.3.0" -[[deps.PikaParser]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "d6ff87de27ff3082131f31a714d25ab6d0a88abf" -uuid = "3bbf5609-3e7b-44cd-8549-7c69f321e792" -version = "0.6.1" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" - [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" @@ -1730,103 +1495,23 @@ git-tree-sha1 = "f9501cc0430a26bc3d156ae1b5b0c1b47af4d6da" uuid = "eebad327-c553-4316-9ea0-9fa01ccd7688" version = "0.3.3" -[[deps.PlotThemes]] -deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "6e55c6841ce3411ccb3457ee52fc48cb698d6fb0" -uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.2.0" - [[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "7b1a9df27f072ac4c9c7cbe5efb198489258d1f5" +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] +git-tree-sha1 = "650a022b2ce86c7dcfbdecf00f78afeeb20e5655" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.1" - -[[deps.PlotlyBase]] -deps = ["ColorSchemes", "Dates", "DelimitedFiles", "DocStringExtensions", "JSON", "LaTeXStrings", "Logging", "Parameters", "Pkg", "REPL", "Requires", "Statistics", "UUIDs"] -git-tree-sha1 = "56baf69781fc5e61607c3e46227ab17f7040ffa2" -uuid = "a03496cd-edff-5a9b-9e67-9cda94a718b5" -version = "0.8.19" - -[[deps.PlotlyJS]] -deps = ["Base64", "Blink", "DelimitedFiles", "JSExpr", "JSON", "Kaleido_jll", "Markdown", "Pkg", "PlotlyBase", "PlotlyKaleido", "REPL", "Reexport", "Requires", "WebIO"] -git-tree-sha1 = "e62d886d33b81c371c9d4e2f70663c0637f19459" -uuid = "f0f68f2c-4968-5e81-91da-67840de0976a" -version = "0.18.13" - - [deps.PlotlyJS.extensions] - CSVExt = "CSV" - DataFramesExt = ["DataFrames", "CSV"] - IJuliaExt = "IJulia" - JSON3Ext = "JSON3" - - [deps.PlotlyJS.weakdeps] - CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - JSON3 = "0f8b85d8-7281-11e9-16c2-39a750bddbf1" - -[[deps.PlotlyKaleido]] -deps = ["Base64", "JSON", "Kaleido_jll"] -git-tree-sha1 = "2650cd8fb83f73394996d507b3411a7316f6f184" -uuid = "f2990250-8cf9-495f-b13a-cce12b45703c" -version = "2.2.4" - -[[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "082f0c4b70c202c37784ce4bfbc33c9f437685bf" -uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.5" - - [deps.Plots.extensions] - FileIOExt = "FileIO" - GeometryBasicsExt = "GeometryBasics" - IJuliaExt = "IJulia" - ImageInTerminalExt = "ImageInTerminal" - UnitfulExt = "Unitful" - - [deps.Plots.weakdeps] - FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" - GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" - IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" - ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" - Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" +version = "1.4.2" [[deps.PolygonOps]] git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" uuid = "647866c9-e3ac-4575-94e7-e3d426903924" version = "0.1.2" -[[deps.Polynomials]] -deps = ["LinearAlgebra", "RecipesBase", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "1a9cfb2dc2c2f1bd63f1906d72af39a79b49b736" -uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" -version = "4.0.11" - - [deps.Polynomials.extensions] - PolynomialsChainRulesCoreExt = "ChainRulesCore" - PolynomialsFFTWExt = "FFTW" - PolynomialsMakieCoreExt = "MakieCore" - PolynomialsMutableArithmeticsExt = "MutableArithmetics" - - [deps.Polynomials.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" - MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b" - MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" version = "1.4.3" -[[deps.PositiveFactorizations]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" -uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" -version = "0.2.4" - [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" @@ -1841,36 +1526,24 @@ version = "1.4.3" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "66b20dd35966a748321d3b2537c4584cf40387c7" +git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.3.2" - -[[deps.Primes]] -deps = ["IntegerMathUtils"] -git-tree-sha1 = "cb420f77dc474d23ee47ca8d14c90810cafe69e7" -uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.6" +version = "2.4.0" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" -[[deps.ProgressBars]] -deps = ["Printf"] -git-tree-sha1 = "b437cdb0385ed38312d91d9c00c20f3798b30256" -uuid = "49802e3a-d2f1-5c88-81d8-b72133a6f568" -version = "1.5.1" - [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "763a8ceb07833dd51bb9e3bbca372de32c0605ad" +git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.10.0" +version = "1.10.2" [[deps.PtrArrays]] -git-tree-sha1 = "f011fbb92c4d401059b2212c05c0601b70f8b759" +git-tree-sha1 = "77a42d78b6a92df47ab37e177b2deac405e1c88f" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" -version = "1.2.0" +version = "1.2.1" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] @@ -1878,17 +1551,17 @@ git-tree-sha1 = "18e8f4d1426e965c7b532ddd260599e1510d26ce" uuid = "4b34888f-f399-49d4-9bb3-47ed5cae4e65" version = "1.0.0" -[[deps.Qt6Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "7c29f0e8c575428bd84dc3c72ece5178caa67336" -uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.5.2+2" - [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.4" +version = "2.11.1" + + [deps.QuadGK.extensions] + QuadGKEnzymeExt = "Enzyme" + + [deps.QuadGK.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.Quaternions]] deps = ["LinearAlgebra", "Random", "RealDot"] @@ -1911,10 +1584,10 @@ uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" @@ -1943,12 +1616,6 @@ git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" version = "1.3.4" -[[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] -git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" -uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.12" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -1966,23 +1633,17 @@ git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" uuid = "ae029012-a4dd-5104-9daa-d747884805df" version = "1.3.0" -[[deps.RingLists]] -deps = ["Random"] -git-tree-sha1 = "f39da63aa6d2d88e0c1bd20ed6a3ff9ea7171ada" -uuid = "286e9d63-9694-5540-9e3c-4e6708fa07b2" -version = "0.2.8" - [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b" +git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.1" +version = "0.8.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" +git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.2+0" +version = "0.5.1+0" [[deps.Rotations]] deps = ["LinearAlgebra", "Quaternions", "Random", "StaticArrays"] @@ -2005,9 +1666,9 @@ version = "0.7.0" [[deps.SIMD]] deps = ["PrecompileTools"] -git-tree-sha1 = "2803cab51702db743f3fda07dd1745aadfbf43bd" +git-tree-sha1 = "98ca7c29edd6fc79cd74c61accb7010a4e7aee33" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.5.0" +version = "3.6.0" [[deps.Scratch]] deps = ["Dates"] @@ -2016,15 +1677,15 @@ uuid = "6c6a2e73-6563-6170-7368-637461726353" version = "1.2.1" [[deps.SeawaterPolynomials]] -git-tree-sha1 = "6d85acd6de472f8e6da81c61c7c5b6280a55e0bc" +git-tree-sha1 = "78f965a2f0cd5250a20c9aba9979346dd2b35734" uuid = "d496a93d-167e-4197-9f49-d3af4ff8fe40" -version = "0.3.4" +version = "0.3.5" [[deps.SentinelArrays]] deps = ["Dates", "Random"] -git-tree-sha1 = "6bb314cb1aacfa37ef58e5a0ccf4a1ec0311f495" +git-tree-sha1 = "ff11acffdb082493657550959d4feb4b6149e73a" uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.4" +version = "1.4.5" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2034,12 +1695,6 @@ git-tree-sha1 = "d7a25e439d07a17b7cdf97eecee504c50fedf5f6" uuid = "3cc68bcd-71a2-5612-b932-767ffbe40ab0" version = "0.2.1" -[[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" -uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" - [[deps.ShaderAbstractions]] deps = ["ColorTypes", "FixedPointNumbers", "GeometryBasics", "LinearAlgebra", "Observables", "StaticArrays", "StructArrays", "Tables"] git-tree-sha1 = "79123bc60c5507f035e6d1d9e563bb2971954ec8" @@ -2063,33 +1718,9 @@ uuid = "73760f76-fbc4-59ce-8f25-708e95d2df96" version = "0.4.0" [[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" - -[[deps.SimpleGraphs]] -deps = ["AbstractLattices", "Combinatorics", "DataStructures", "IterTools", "LightXML", "LinearAlgebra", "LinearAlgebraX", "Optim", "Primes", "Random", "RingLists", "SimplePartitions", "SimplePolynomials", "SimpleRandom", "SparseArrays", "Statistics"] -git-tree-sha1 = "f65caa24a622f985cc341de81d3f9744435d0d0f" -uuid = "55797a34-41de-5266-9ec1-32ac4eb504d3" -version = "0.8.6" - -[[deps.SimplePartitions]] -deps = ["AbstractLattices", "DataStructures", "Permutations"] -git-tree-sha1 = "e182b9e5afb194142d4668536345a365ea19363a" -uuid = "ec83eff0-a5b5-5643-ae32-5cbf6eedec9d" -version = "0.3.2" - -[[deps.SimplePolynomials]] -deps = ["Mods", "Multisets", "Polynomials", "Primes"] -git-tree-sha1 = "7063828369cafa93f3187b3d0159f05582011405" -uuid = "cc47b68c-3164-5771-a705-2bc0097375a0" -version = "0.2.17" - -[[deps.SimpleRandom]] -deps = ["Distributions", "LinearAlgebra", "Random"] -git-tree-sha1 = "3a6fb395e37afab81aeea85bae48a4db5cd7244a" -uuid = "a6525b86-64cd-54fa-8f65-62fc48bdc0e8" -version = "0.3.1" +version = "1.2.0" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -2133,11 +1764,11 @@ weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" -[[deps.StableHashTraits]] -deps = ["Compat", "PikaParser", "SHA", "Tables", "TupleTools"] -git-tree-sha1 = "a58e0d86783226378a6857f2de26d3314107e3ac" -uuid = "c5dd0088-6c3f-4803-b00e-f31a60c170fa" -version = "1.2.0" +[[deps.StableRNGs]] +deps = ["Random"] +git-tree-sha1 = "83e6cce8324d49dfaf9ef059227f91ed4441a8e5" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.2" [[deps.StackViews]] deps = ["OffsetArrays"] @@ -2152,10 +1783,10 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" version = "0.8.10" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] +git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.1" +version = "1.8.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2178,11 +1809,6 @@ git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.3" -[[deps.StaticPermutations]] -git-tree-sha1 = "193c3daa18ff3e55c1dae66acb6a762c4a3bdb0b" -uuid = "15972242-4b8f-49a0-b8a1-9ac0e7a1a45d" -version = "0.3.0" - [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2196,15 +1822,15 @@ version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +git-tree-sha1 = "5cf7606d6cef84b543b483848d4ae08ad9832b21" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.3" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "cef0472124fab0695b58ca35a77c6fb942fdab8a" +git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.1" +version = "1.3.2" [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" @@ -2214,27 +1840,11 @@ version = "1.3.1" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" -[[deps.Strided]] -deps = ["LinearAlgebra", "StridedViews", "TupleTools"] -git-tree-sha1 = "bd9bd1c70cfc115cc3a30213fc725125a6b43652" -uuid = "5e0ebb24-38b0-5f93-81fe-25c709ecae67" -version = "2.1.0" - -[[deps.StridedViews]] -deps = ["LinearAlgebra", "PackageExtensionCompat"] -git-tree-sha1 = "2917996ce0fa6b8a3a85240a5e9ff930e2aeaa43" -uuid = "4db3bf67-4bd7-4b4e-b153-31dc3fb37143" -version = "0.3.1" -weakdeps = ["CUDA"] - - [deps.StridedViews.extensions] - StridedViewsCUDAExt = "CUDA" - [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.3.4" +version = "0.4.0" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] @@ -2249,12 +1859,6 @@ weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] StructArraysSparseArraysExt = "SparseArrays" StructArraysStaticArraysExt = "StaticArrays" -[[deps.StructTypes]] -deps = ["Dates", "UUIDs"] -git-tree-sha1 = "ca4bccb03acf9faaf4137a9abc1881ed1841aa70" -uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" -version = "1.10.0" - [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2266,9 +1870,9 @@ version = "7.2.1+1" [[deps.Suppressor]] deps = ["Logging"] -git-tree-sha1 = "9143c41bd539a8885c79728b9dedb0ce47dc9819" +git-tree-sha1 = "6dbb5b635c5437c68c28c2ac9e39b87138f37c0a" uuid = "fd094767-a336-5f1f-9728-57cf17d0bbfb" -version = "0.2.7" +version = "0.2.8" [[deps.TOML]] deps = ["Dates"] @@ -2282,10 +1886,10 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "cb76cf677714c095e535e3501ac7954732aeea2d" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.11.1" +version = "1.12.0" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2294,13 +1898,21 @@ version = "1.10.0" [[deps.TaylorSeries]] deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"] -git-tree-sha1 = "1c7170668366821b0c4c4fe03ee78f8d6cf36e2c" +git-tree-sha1 = "90c9bc500f4c5cdd235c81503ec91b2048f06423" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" -version = "0.16.0" -weakdeps = ["IntervalArithmetic"] +version = "0.17.8" [deps.TaylorSeries.extensions] TaylorSeriesIAExt = "IntervalArithmetic" + TaylorSeriesJLD2Ext = "JLD2" + TaylorSeriesRATExt = "RecursiveArrayTools" + TaylorSeriesSAExt = "StaticArrays" + + [deps.TaylorSeries.weakdeps] + IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" + JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.TensorCore]] deps = ["LinearAlgebra"] @@ -2314,9 +1926,9 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "bc7fd5c91041f44636b2c134041f7e5263ce58ae" +git-tree-sha1 = "38f139cc4abf345dd4f22286ec000728d5e8e097" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.10.0" +version = "0.10.2" [[deps.TiledIteration]] deps = ["OffsetArrays", "StaticArrayInterface"] @@ -2326,29 +1938,20 @@ version = "0.5.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531" +git-tree-sha1 = "3a6f063d690135f5c1ba351412c82bae4d1402bf" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.24" +version = "0.5.25" [[deps.TranscodingStreams]] -git-tree-sha1 = "60df3f8126263c0d6b357b9a1017bb94f53e3582" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.0" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] +version = "0.11.3" [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" uuid = "981d1d27-644d-49a2-9326-4793e63143c3" version = "0.1.0" -[[deps.TupleTools]] -git-tree-sha1 = "41d61b1c545b06279871ef1a4b5fcb2cac2191cd" -uuid = "9d95972d-f1c8-5527-a6e0-b4b365fa01f6" -version = "1.5.0" - [[deps.URIs]] git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" @@ -2358,11 +1961,6 @@ version = "1.5.1" deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" - [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" @@ -2374,9 +1972,9 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "dd260903fdabea27d9b6021689b3cd5401a57748" +git-tree-sha1 = "d95fe458f26209c66a187b1114df96fd70839efd" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.20.0" +version = "1.21.0" [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" @@ -2386,12 +1984,6 @@ version = "1.20.0" ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.4" - [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -2399,38 +1991,15 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" +git-tree-sha1 = "2d17fabcd17e67d7625ce9c531fb9f40b7c42ce4" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.5" - -[[deps.Unzip]] -git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" -uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.2.0" +version = "0.2.1" [[deps.VersionParsing]] git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" version = "1.3.0" -[[deps.Vulkan_Loader_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" -uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" -version = "1.3.243+0" - -[[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703" -uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+1" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "93f43ab61b16ddfb2fd3bb13b3ce241cafb0e6c9" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.31.0+0" - [[deps.WebIO]] deps = ["AssetRegistry", "Base64", "Distributed", "FunctionalCollections", "JSON", "Logging", "Observables", "Pkg", "Random", "Requires", "Sockets", "UUIDs", "WebSockets", "Widgets"] git-tree-sha1 = "0eef0765186f7452e52236fa42ca8c9b3c11c6e3" @@ -2457,9 +2026,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "d9717ce3518dc68a99e6b96300813760d887a01d" +git-tree-sha1 = "1165b0443d0eca63ac1e32b8c0eb69ed2f4f8127" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.1+0" +version = "2.13.3+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] @@ -2467,24 +2036,6 @@ git-tree-sha1 = "a54ee957f4c86b526460a720dbc882fa5edcbefc" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" version = "1.1.41+0" -[[deps.XZ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ac88fb95ae6447c8dda6a5503f3bafd496ae8632" -uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.4.6+0" - -[[deps.Xorg_libICE_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" -uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.1.1+0" - -[[deps.Xorg_libSM_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] -git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" -uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.4+0" - [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495" @@ -2497,12 +2048,6 @@ git-tree-sha1 = "6035850dcc70518ca32f012e46015b9beeda49d8" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" version = "1.0.11+0" -[[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" -uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" - [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "34d526d318358a859d7de23da945578e8e8727b7" @@ -2515,30 +2060,6 @@ git-tree-sha1 = "d2d1a5c49fae4ba39983f63de6afcbea47194e85" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" version = "1.3.6+0" -[[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" -uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" - -[[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" -uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" - -[[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" -uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" - -[[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" -uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" - [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] git-tree-sha1 = "47e45cd78224c53109495b3e324df0c37bb61fbe" @@ -2557,60 +2078,6 @@ git-tree-sha1 = "bcd466676fef0878338c61e655629fa7bbc69d8e" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" version = "1.17.0+0" -[[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4" -uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+0" - -[[deps.Xorg_xcb_util_cursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" -uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" - -[[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" -uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" -uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" -uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" - -[[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" -uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" - -[[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" -uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" - -[[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "330f955bc41bb8f5270a369c473fc4a5a4e4d3cb" -uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+0" - -[[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" -uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" - [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "e92a1a012a10506618f10b7047e478403a046c77" @@ -2619,44 +2086,26 @@ version = "1.5.0+0" [[deps.ZMQ]] deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "ad6944a6b3dfd8e95920e48355d3baf510319262" +git-tree-sha1 = "18cfd00df3cbbebf8ea4ec7ea6bbceb3af716bd0" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.2.6" +version = "1.3.0" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] -git-tree-sha1 = "42f97fb27394378591666ab0e9cee369e6d0e1f9" +git-tree-sha1 = "f02ce8f0fda1ed40f4d0d59a2ad05e35e8ac9b0e" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.5+0" +version = "4.3.5+1" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" version = "1.2.13+1" -[[deps.Zstd_jll]] +[[deps.demumble_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e678132f07ddb5bfa46857f0d7620fb9be675d3b" -uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.6+0" - -[[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" -uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" - -[[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a68c9655fbe6dfcab3d972808f1aafec151ce3f8" -uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.43.0+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+0" +git-tree-sha1 = "6498e3581023f8e530f34760d18f75a69e3a4ea8" +uuid = "1e29f10c-031c-5a83-9565-69cddfc27673" +version = "1.3.0+0" [[deps.isoband_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2671,63 +2120,45 @@ uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" version = "3.9.0+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.15.2+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+1" -[[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" -uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" - [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" - -[[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" -uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "2.0.3+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d7015d2e18a5fd9a4f47de711837e980519781a4" +git-tree-sha1 = "b70c870239dc3d7bc094eb2d6be9b73d27bef280" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.43+1" +version = "1.6.44+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "libpng_jll"] -git-tree-sha1 = "d4f63314c8aa1e48cd22aa0c17ed76cd1ae48c3c" +git-tree-sha1 = "7dfa0fd9c783d3d0cc43ea1af53d69ba45c447df" uuid = "075b6546-f08a-558a-be8f-8157d0f608a5" -version = "1.10.3+0" +version = "1.10.3+1" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e" +git-tree-sha1 = "f76d682d87eefadd3f165d8d9fda436464213142" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+0" +version = "1.0.20+1" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" - -[[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" -uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.3.7+2" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] @@ -2756,9 +2187,3 @@ deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" version = "3.5.0+0" - -[[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37" -uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+1" diff --git a/Project.toml b/Project.toml index 4099065..05f4aff 100644 --- a/Project.toml +++ b/Project.toml @@ -6,17 +6,15 @@ CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" ColorSchemes = "35d6a980-a343-548e-a6ea-1d62b119f2f4" Dierckx = "39dd38d3-220a-591b-8e3c-4c3a8c710a94" -GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a" IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" ImageFiltering = "6a3955dd-da59-5b1f-98d4-e7296123deb5" Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" MAT = "23992714-dd62-5051-b70f-ba57cb901cac" NCDatasets = "85f8d34a-cbdd-5861-8df4-14fed0d494ab" NaNStatistics = "b946abbf-3ea7-4610-9019-9858bfdeaf2d" Oceananigans = "9e8cae18-63c1-5223-a75c-80ca9d6e9a09" Oceanostics = "d0ccf422-c8fb-49b5-a76d-74acdde946ac" -PlotlyJS = "f0f68f2c-4968-5e81-91da-67840de0976a" -Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" Suppressor = "fd094767-a336-5f1f-9728-57cf17d0bbfb" diff --git a/initialize_internal_tide.jl b/initialize_internal_tide.jl index 47b887b..ade26b2 100644 --- a/initialize_internal_tide.jl +++ b/initialize_internal_tide.jl @@ -9,7 +9,7 @@ using MAT using Statistics using Oceanostics using Oceanostics.TKEBudgetTerms: BuoyancyProductionTerm -using Interpolations +using Interpolations: LinearInterpolation using CUDA using Suppressor function initialize_internal_tide( @@ -35,9 +35,9 @@ function initialize_internal_tide( ) -function log_gpu_memory_usage() - return @capture_out CUDA.memory_status() # retrieve raw string status -end +# function log_gpu_memory_usage() +# return @capture_out CUDA.memory_status() # retrieve raw string status +# end ## Simulation parameters H = 2.25kilometers # vertical extent @@ -96,7 +96,9 @@ grid_real = ImmersedBoundaryGrid(grid, GridFittedBottom(z_interp)) z₀ = 0.1 # m (roughness length) κ_von = 0.4 # von Karman constant -CUDA.@allowscalar z₁ = first(znodes(grid, Center())) # Closest grid center to the bottom +# CUDA.@allowscalar z₁ = first(znodes(grid, Center())) # Closest grid center to the bottom +z₁ = first(znodes(grid, Center())) # Closest grid center to the bottom +# z₁ = first(znodes(grid, Center())) # Closest grid center to the bottom cᴰ = (κ_von / log(z₁ / z₀))^2 # Drag coefficient # non-immersed and immersed boundary conditions @inline drag_u(x, y, t, u, v, p) = - p.cᴰ * √(u^2 + v^2) * u @@ -165,7 +167,6 @@ model = NonhydrostaticModel( timestepper = :RungeKutta3, hydrostatic_pressure_anomaly = CenterField(grid), background_fields = Oceananigans.BackgroundFields(; background_closure_fluxes=true, b=B̄_field), - ) set!(model, b=bᵢ, u=uᵢ, v=vᵢ) @@ -202,8 +203,8 @@ Rig = RichardsonNumber(model; location=(Center, Center, Face), add_background=tr χ = TracerVarianceDissipationRate(model, :b) # buoyancy budget -include("diagnostics_budget.jl") -Bbudget=get_budget_outputs_tuple(model;) +# include("diagnostics_budget.jl") +# Bbudget=get_budget_outputs_tuple(model;) @@ -240,12 +241,12 @@ if output_writer ## output 3D field window time average tidal_period = 2π/ω₀ - simulation.output_writers[:nc_threeD_timeavg] = NetCDFOutputWriter(model, merge(threeD_diags, Bbudget), + simulation.output_writers[:nc_threeD_timeavg] = NetCDFOutputWriter(model, threeD_diags, verbose=true, filename = string(dir, fname, "_threeD_timeavg.nc"), overwrite_existing = overwrite_output, schedule = AveragedTimeInterval(0.25tidal_period, window=0.25tidal_period, stride=1), - indices = (:,Ny÷2,:) # take this out when running real simulation + # indices = (:,Ny÷2,:) # take this out when running real simulation ) @@ -292,17 +293,17 @@ if output_writer end ## Progress messages -progress_message(s) = @info @sprintf("[%.2f%%], iteration: %d, time: %.3f, max|w|: %.2e, Δt: %.3f, - advective CFL: %.2e, diffusive CFL: %.2e, gpu_memory_usage:%s\n", - 100 * s.model.clock.time / s.stop_time, s.model.clock.iteration, - s.model.clock.time, maximum(abs, model.velocities.w), s.Δt, - AdvectiveCFL(s.Δt)(s.model), DiffusiveCFL(s.Δt)(s.model) - ,log_gpu_memory_usage()) # progress_message(s) = @info @sprintf("[%.2f%%], iteration: %d, time: %.3f, max|w|: %.2e, Δt: %.3f, -# advective CFL: %.2e, diffusive CFL: %.2e", +# advective CFL: %.2e, diffusive CFL: %.2e, gpu_memory_usage:%s\n", # 100 * s.model.clock.time / s.stop_time, s.model.clock.iteration, # s.model.clock.time, maximum(abs, model.velocities.w), s.Δt, -# AdvectiveCFL(s.Δt)(s.model), DiffusiveCFL(s.Δt)(s.model)) +# AdvectiveCFL(s.Δt)(s.model), DiffusiveCFL(s.Δt)(s.model) +# ,log_gpu_memory_usage()) +progress_message(s) = @info @sprintf("[%.2f%%], iteration: %d, time: %.3f, max|w|: %.2e, Δt: %.3f, + advective CFL: %.2e, diffusive CFL: %.2e", + 100 * s.model.clock.time / s.stop_time, s.model.clock.iteration, + s.model.clock.time, maximum(abs, model.velocities.w), s.Δt, + AdvectiveCFL(s.Δt)(s.model), DiffusiveCFL(s.Δt)(s.model)) simulation.callbacks[:progress] = Callback(progress_message, TimeInterval(Δtᵒ)) diff --git a/run_internal_tide.jl b/run_internal_tide.jl index a650097..1d8950c 100644 --- a/run_internal_tide.jl +++ b/run_internal_tide.jl @@ -3,12 +3,13 @@ include("initialize_internal_tide.jl") -simname = "tilt" +simname = "tilt_test_timeaverageinterval" const Nx = 500 const Ny = 1000 const Nz = 250 const Δtᵒ = 30minutes # interval for saving output -const tᶠ = 60days # endtime of the simulation +const ω₀ = 1.4e-4 # tidal freq. +const tᶠ = 2*2π/ω₀ # endtime of the simulation const θ = 3.6e-3 # slope angle const U₀ = 0.025 # tidal amplitude const N = 1.e-3 # Buoyancy frequency @@ -17,11 +18,11 @@ threeD_snapshot_interval = 12Δtᵒ # effective only when output_mode="analysis closure = SmagorinskyLilly() architecture = GPU() # 3 modes to choose: "spinup", "test", "analysis" -output_mode = "spinup" +output_mode = "test" output_writer = true clean_checkpoint = false # cleanup checkpoint overwrite_output = true # overwrite existing output (if pickup=true, clean=false, and vice versa) -timerange = "40-60" +timerange = "0-2" simulation = initialize_internal_tide(simname, Nx, Ny, Nz; Δtᵒ=Δtᵒ, tᶠ=tᶠ, θ=θ, U₀=U₀, N=N, f₀=f₀, output_mode=output_mode, output_writer=output_writer, @@ -30,7 +31,7 @@ simulation = initialize_internal_tide(simname, Nx, Ny, Nz; closure=closure, timerange=timerange) ## Running the simulation! pickup = string("output/", simname, "/internal_tide_theta=0.0036_realtopo3D_Nx=500_Nz=250_20-40_checkpoint_iteration112495.jld2") -run!(simulation; pickup=pickup) +run!(simulation; pickup=false) @info """ Simulation complete. """ \ No newline at end of file diff --git a/run_internal_tide_testing.jl b/run_internal_tide_testing.jl index cdfc633..30e5ff0 100644 --- a/run_internal_tide_testing.jl +++ b/run_internal_tide_testing.jl @@ -9,20 +9,20 @@ const Ny = 10 const Nz = 10 const Δtᵒ = 30minutes # interval for saving output const ω₀ = 1.4e-4 # tidal freq. -const tᶠ = 2*2π/ω₀ # endtime of the simulation +const tᶠ = 4*2π/ω₀ # endtime of the simulation const θ = 3.6e-3 # slope angle const U₀ = 0.025 # tidal amplitude const N = 1.e-3 # Buoyancy frequency const f₀ = -0.53e-4 # Coriolis frequency threeD_snapshot_interval = 12Δtᵒ # effective only when output_mode="analysis" closure = SmagorinskyLilly() -architecture = GPU() +architecture = CPU() # 3 modes to choose: "spinup", "test", "analysis" output_mode = "test" output_writer = true clean_checkpoint = false # cleanup checkpoint overwrite_output = true # overwrite existing output (if pickup=true, clean=false, and vice versa) -timerange = "0-2" +timerange = "2-4" simulation = initialize_internal_tide(simname, Nx, Ny, Nz; Δtᵒ=Δtᵒ, tᶠ=tᶠ, θ=θ, U₀=U₀, N=N, f₀=f₀, output_mode=output_mode, output_writer=output_writer, @@ -30,7 +30,7 @@ simulation = initialize_internal_tide(simname, Nx, Ny, Nz; clean_checkpoint=clean_checkpoint, overwrite_output=overwrite_output, closure=closure, timerange=timerange) ## Running the simulation! -pickup = string("output/", simname, "/internal_tide_theta=0_realtopo3D_Nx=10_Nz=10_0-2_checkpoint_iteration369.jld2") +pickup = string("output/", simname, "/internal_tide_theta=0.0036_realtopo3D_Nx=10_Nz=10_0-2_checkpoint_iteration476.jld2") run!(simulation; pickup=pickup) @info """ Simulation complete.