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Missing reqs for install and error #1

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pl-ki opened this issue Jun 14, 2023 · 1 comment
Open

Missing reqs for install and error #1

pl-ki opened this issue Jun 14, 2023 · 1 comment

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@pl-ki
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pl-ki commented Jun 14, 2023

Seems the following requirements are not specified:
numpy==1.21 (API of latest 1.24 has changed to incompatible)
tomotopy
scanpy

Still getting error:

import cytograph
Traceback (most recent call last):
File "", line 1, in
File "/home/pipeline/git/cytograph-shoji/cytograph/init.py", line 14, in
from .visualization import *
File "/home/pipeline/git/cytograph-shoji/cytograph/visualization/init.py", line 17, in
from .plot_karyotype import PlotKaryotype
ImportError: cannot import name 'PlotKaryotype' from 'cytograph.visualization.plot_karyotype' (/home/pipeline/git/cytograph-shoji/cytograph/visualization/plot_karyotype.py)
(using python 3.8.5)

@pl-ki
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pl-ki commented Jun 14, 2023

Seems PlotKaryotype has been replaced by PlotHmmKaryotype in plot_karyotype.py but this is not reflected in corresponding init.py

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