diff --git a/data/modules/samtools/stats/filtered_reads.bam_samtools_stats.txt b/data/modules/samtools/stats/filtered_reads.bam_samtools_stats.txt new file mode 100644 index 00000000..a08fc182 --- /dev/null +++ b/data/modules/samtools/stats/filtered_reads.bam_samtools_stats.txt @@ -0,0 +1,1168 @@ +# This file was produced by samtools stats (1.18+htslib-1.18) and can be plotted using plot-bamstats +# This file contains statistics for all reads. +# The command line was: stats -F 16 S1.bam +# CHK, Checksum [2]Read Names [3]Sequences [4]Qualities +# CHK, CRC32 of reads which passed filtering followed by addition (32bit overflow) +CHK 4668a3e6 2f837e08 4415b7f3 +# Summary Numbers. Use `grep ^SN | cut -f 2-` to extract this part. +SN raw total sequences: 1998 # excluding supplementary and secondary reads +SN filtered sequences: 999 +SN sequences: 999 +SN is sorted: 1 +SN 1st fragments: 517 +SN last fragments: 482 +SN reads mapped: 999 +SN reads mapped and paired: 999 # paired-end technology bit set + both mates mapped +SN reads unmapped: 0 +SN reads properly paired: 999 # proper-pair bit set +SN reads paired: 999 # paired-end technology bit set +SN reads duplicated: 0 # PCR or optical duplicate bit set +SN reads MQ0: 0 # mapped and MQ=0 +SN reads QC failed: 0 +SN non-primary alignments: 0 +SN supplementary alignments: 0 +SN total length: 69930 # ignores clipping +SN total first fragment length: 36190 # ignores clipping +SN total last fragment length: 33740 # ignores clipping +SN bases mapped: 69930 # ignores clipping +SN bases mapped (cigar): 69881 # more accurate +SN bases trimmed: 0 +SN bases duplicated: 0 +SN mismatches: 1445 # from NM fields +SN error rate: 2.067801e-02 # mismatches / bases mapped (cigar) +SN average length: 70 +SN average first fragment length: 70 +SN average last fragment length: 70 +SN maximum length: 70 +SN maximum first fragment length: 70 +SN maximum last fragment length: 70 +SN average quality: 17.0 +SN insert size average: 502.2 +SN insert size standard deviation: 41.4 +SN inward oriented pairs: 433 +SN outward oriented pairs: 0 +SN pairs with other orientation: 0 +SN pairs on different chromosomes: 0 +SN percentage of properly paired reads (%): 100.0 +# First Fragment Qualities. Use `grep ^FFQ | cut -f 2-` to extract this part. +# Columns correspond to qualities and rows to cycles. First column is the cycle number. +FFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +FFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 517 0 +# Last Fragment Qualities. Use `grep ^LFQ | cut -f 2-` to extract this part. +# Columns correspond to qualities and rows to cycles. First column is the cycle number. +LFQ 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 7 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 11 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 15 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 16 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 18 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 19 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 21 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 24 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 25 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 27 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 28 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 29 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 30 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 31 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 32 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 33 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 34 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 35 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 36 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 38 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 39 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 40 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 41 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 42 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 43 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 44 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 45 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 46 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 48 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 49 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 50 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 51 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 52 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 53 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 54 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 56 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 58 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 59 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 62 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 63 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 65 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 66 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 67 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 68 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 69 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +LFQ 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 482 0 +# GC Content of first fragments. Use `grep ^GCF | cut -f 2-` to extract this part. +GCF 9.80 0 +GCF 22.61 3 +GCF 26.38 12 +GCF 27.64 27 +GCF 28.89 25 +GCF 30.40 43 +GCF 31.91 41 +GCF 33.42 51 +GCF 34.92 40 +GCF 36.18 49 +GCF 37.44 51 +GCF 38.94 48 +GCF 40.45 34 +GCF 41.96 29 +GCF 43.47 17 +GCF 44.72 14 +GCF 45.98 11 +GCF 48.24 4 +GCF 50.50 1 +GCF 52.01 0 +GCF 54.02 2 +# GC Content of last fragments. Use `grep ^GCL | cut -f 2-` to extract this part. +GCL 9.05 0 +GCL 18.84 1 +GCL 21.11 3 +GCL 23.37 4 +GCL 25.63 11 +GCL 27.64 21 +GCL 28.89 34 +GCL 30.40 36 +GCL 31.91 49 +GCL 33.42 56 +GCL 34.92 34 +GCL 36.18 41 +GCL 38.19 37 +GCL 40.45 38 +GCL 41.96 23 +GCL 43.47 14 +GCL 44.72 13 +GCL 45.98 8 +GCL 47.49 4 +GCL 48.99 0 +GCL 50.50 3 +GCL 52.01 0 +GCL 53.52 1 +# ACGT content per cycle. Use `grep ^GCC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] +GCC 1 37.14 16.22 18.92 27.73 0.00 0.00 +GCC 2 37.14 16.62 18.92 27.33 0.00 0.00 +GCC 3 38.04 14.91 17.72 29.33 0.00 0.00 +GCC 4 35.84 15.62 18.42 30.13 0.00 0.00 +GCC 5 34.93 17.02 17.52 30.53 0.00 0.00 +GCC 6 36.24 14.21 20.62 28.93 0.00 0.00 +GCC 7 37.14 16.42 20.12 26.33 0.00 0.00 +GCC 8 38.64 14.41 19.32 27.63 0.00 0.00 +GCC 9 37.74 17.02 18.92 26.33 0.00 0.00 +GCC 10 37.14 16.22 17.42 29.23 0.00 0.00 +GCC 11 34.43 16.72 21.12 27.73 0.00 0.00 +GCC 12 39.64 15.22 17.72 27.43 0.00 0.00 +GCC 13 36.34 16.62 18.42 28.63 0.00 0.00 +GCC 14 35.04 15.12 20.32 29.53 0.00 0.00 +GCC 15 34.43 15.82 20.12 29.63 0.00 0.00 +GCC 16 35.64 17.72 19.02 27.63 0.00 0.00 +GCC 17 34.33 13.11 21.22 31.33 0.00 0.00 +GCC 18 33.83 17.22 18.02 30.93 0.00 0.00 +GCC 19 37.64 14.91 19.62 27.83 0.00 0.00 +GCC 20 35.54 15.12 19.32 30.03 0.00 0.00 +GCC 21 34.63 16.02 20.02 29.33 0.00 0.00 +GCC 22 36.14 16.32 19.62 27.93 0.00 0.00 +GCC 23 36.64 17.72 16.72 28.93 0.00 0.00 +GCC 24 36.34 15.42 17.12 31.13 0.00 0.00 +GCC 25 37.94 15.32 18.82 27.93 0.00 0.00 +GCC 26 33.63 15.32 19.32 31.73 0.00 0.00 +GCC 27 34.13 14.41 20.72 30.73 0.00 0.00 +GCC 28 36.14 16.52 19.12 28.23 0.00 0.00 +GCC 29 36.04 15.02 17.52 31.43 0.00 0.00 +GCC 30 35.54 14.61 18.82 31.03 0.00 0.00 +GCC 31 37.54 14.41 19.82 28.23 0.00 0.00 +GCC 32 36.84 16.12 18.92 28.13 0.00 0.00 +GCC 33 35.74 17.82 18.32 28.13 0.00 0.00 +GCC 34 34.43 17.12 18.12 30.33 0.00 0.00 +GCC 35 34.13 15.52 22.32 28.03 0.00 0.00 +GCC 36 35.14 17.82 17.52 29.53 0.00 0.00 +GCC 37 35.94 15.02 20.32 28.73 0.00 0.00 +GCC 38 36.64 16.42 20.02 26.93 0.00 0.00 +GCC 39 36.74 16.12 19.32 27.83 0.00 0.00 +GCC 40 37.54 16.22 18.22 28.03 0.00 0.00 +GCC 41 35.34 15.32 19.52 29.83 0.00 0.00 +GCC 42 36.44 16.62 18.62 28.33 0.00 0.00 +GCC 43 36.34 16.52 19.02 28.13 0.00 0.00 +GCC 44 37.34 15.52 18.52 28.63 0.00 0.00 +GCC 45 36.44 16.32 17.72 29.53 0.00 0.00 +GCC 46 34.93 16.02 20.52 28.53 0.00 0.00 +GCC 47 37.74 15.32 17.32 29.63 0.00 0.00 +GCC 48 39.34 14.91 17.62 28.13 0.00 0.00 +GCC 49 35.44 16.82 17.12 30.63 0.00 0.00 +GCC 50 34.53 15.62 19.32 30.53 0.00 0.00 +GCC 51 36.54 18.02 17.82 27.63 0.00 0.00 +GCC 52 39.14 15.12 18.32 27.43 0.00 0.00 +GCC 53 37.34 15.92 18.72 28.03 0.00 0.00 +GCC 54 35.34 14.01 20.32 30.33 0.00 0.00 +GCC 55 36.84 17.12 19.02 27.03 0.00 0.00 +GCC 56 36.74 17.92 18.72 26.63 0.00 0.00 +GCC 57 39.64 16.02 16.12 28.23 0.00 0.00 +GCC 58 37.74 15.72 19.02 27.53 0.00 0.00 +GCC 59 35.34 17.52 19.02 28.13 0.00 0.00 +GCC 60 37.54 15.92 19.22 27.33 0.00 0.00 +GCC 61 36.94 17.32 16.92 28.83 0.00 0.00 +GCC 62 34.13 14.71 21.32 29.83 0.00 0.00 +GCC 63 36.54 17.02 17.92 28.53 0.00 0.00 +GCC 64 35.74 17.62 19.82 26.83 0.00 0.00 +GCC 65 36.04 15.82 19.92 28.23 0.00 0.00 +GCC 66 39.14 13.61 17.22 30.03 0.00 0.00 +GCC 67 37.44 15.42 19.72 27.43 0.00 0.00 +GCC 68 36.54 16.22 16.62 30.63 0.00 0.00 +GCC 69 37.64 15.72 18.92 27.73 0.00 0.00 +GCC 70 34.93 17.72 18.02 29.33 0.00 0.00 +# ACGT content per cycle, read oriented. Use `grep ^GCT | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%] +GCT 1 37.14 16.22 18.92 27.73 +GCT 2 37.14 16.62 18.92 27.33 +GCT 3 38.04 14.91 17.72 29.33 +GCT 4 35.84 15.62 18.42 30.13 +GCT 5 34.93 17.02 17.52 30.53 +GCT 6 36.24 14.21 20.62 28.93 +GCT 7 37.14 16.42 20.12 26.33 +GCT 8 38.64 14.41 19.32 27.63 +GCT 9 37.74 17.02 18.92 26.33 +GCT 10 37.14 16.22 17.42 29.23 +GCT 11 34.43 16.72 21.12 27.73 +GCT 12 39.64 15.22 17.72 27.43 +GCT 13 36.34 16.62 18.42 28.63 +GCT 14 35.04 15.12 20.32 29.53 +GCT 15 34.43 15.82 20.12 29.63 +GCT 16 35.64 17.72 19.02 27.63 +GCT 17 34.33 13.11 21.22 31.33 +GCT 18 33.83 17.22 18.02 30.93 +GCT 19 37.64 14.91 19.62 27.83 +GCT 20 35.54 15.12 19.32 30.03 +GCT 21 34.63 16.02 20.02 29.33 +GCT 22 36.14 16.32 19.62 27.93 +GCT 23 36.64 17.72 16.72 28.93 +GCT 24 36.34 15.42 17.12 31.13 +GCT 25 37.94 15.32 18.82 27.93 +GCT 26 33.63 15.32 19.32 31.73 +GCT 27 34.13 14.41 20.72 30.73 +GCT 28 36.14 16.52 19.12 28.23 +GCT 29 36.04 15.02 17.52 31.43 +GCT 30 35.54 14.61 18.82 31.03 +GCT 31 37.54 14.41 19.82 28.23 +GCT 32 36.84 16.12 18.92 28.13 +GCT 33 35.74 17.82 18.32 28.13 +GCT 34 34.43 17.12 18.12 30.33 +GCT 35 34.13 15.52 22.32 28.03 +GCT 36 35.14 17.82 17.52 29.53 +GCT 37 35.94 15.02 20.32 28.73 +GCT 38 36.64 16.42 20.02 26.93 +GCT 39 36.74 16.12 19.32 27.83 +GCT 40 37.54 16.22 18.22 28.03 +GCT 41 35.34 15.32 19.52 29.83 +GCT 42 36.44 16.62 18.62 28.33 +GCT 43 36.34 16.52 19.02 28.13 +GCT 44 37.34 15.52 18.52 28.63 +GCT 45 36.44 16.32 17.72 29.53 +GCT 46 34.93 16.02 20.52 28.53 +GCT 47 37.74 15.32 17.32 29.63 +GCT 48 39.34 14.91 17.62 28.13 +GCT 49 35.44 16.82 17.12 30.63 +GCT 50 34.53 15.62 19.32 30.53 +GCT 51 36.54 18.02 17.82 27.63 +GCT 52 39.14 15.12 18.32 27.43 +GCT 53 37.34 15.92 18.72 28.03 +GCT 54 35.34 14.01 20.32 30.33 +GCT 55 36.84 17.12 19.02 27.03 +GCT 56 36.74 17.92 18.72 26.63 +GCT 57 39.64 16.02 16.12 28.23 +GCT 58 37.74 15.72 19.02 27.53 +GCT 59 35.34 17.52 19.02 28.13 +GCT 60 37.54 15.92 19.22 27.33 +GCT 61 36.94 17.32 16.92 28.83 +GCT 62 34.13 14.71 21.32 29.83 +GCT 63 36.54 17.02 17.92 28.53 +GCT 64 35.74 17.62 19.82 26.83 +GCT 65 36.04 15.82 19.92 28.23 +GCT 66 39.14 13.61 17.22 30.03 +GCT 67 37.44 15.42 19.72 27.43 +GCT 68 36.54 16.22 16.62 30.63 +GCT 69 37.64 15.72 18.92 27.73 +GCT 70 34.93 17.72 18.02 29.33 +# ACGT content per cycle for first fragments. Use `grep ^FBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] +FBC 1 39.65 17.41 15.47 27.47 0.00 0.00 +FBC 2 34.62 16.05 21.08 28.24 0.00 0.00 +FBC 3 37.72 15.67 18.18 28.43 0.00 0.00 +FBC 4 35.01 14.31 19.15 31.53 0.00 0.00 +FBC 5 34.04 17.41 17.41 31.14 0.00 0.00 +FBC 6 35.59 13.35 20.89 30.17 0.00 0.00 +FBC 7 39.65 14.89 21.08 24.37 0.00 0.00 +FBC 8 39.46 12.38 18.96 29.21 0.00 0.00 +FBC 9 36.17 18.18 20.89 24.76 0.00 0.00 +FBC 10 36.36 17.02 18.57 28.05 0.00 0.00 +FBC 11 35.01 14.70 22.82 27.47 0.00 0.00 +FBC 12 36.94 17.41 17.79 27.85 0.00 0.00 +FBC 13 38.68 16.83 18.76 25.73 0.00 0.00 +FBC 14 33.85 16.25 19.73 30.17 0.00 0.00 +FBC 15 36.17 15.86 19.34 28.63 0.00 0.00 +FBC 16 36.94 15.47 17.60 29.98 0.00 0.00 +FBC 17 34.82 13.54 19.34 32.30 0.00 0.00 +FBC 18 31.72 18.76 18.38 31.14 0.00 0.00 +FBC 19 36.56 15.86 19.34 28.24 0.00 0.00 +FBC 20 33.85 16.63 19.92 29.59 0.00 0.00 +FBC 21 34.82 17.79 20.50 26.89 0.00 0.00 +FBC 22 37.33 17.21 19.73 25.73 0.00 0.00 +FBC 23 37.91 17.02 15.67 29.40 0.00 0.00 +FBC 24 35.01 15.47 18.18 31.33 0.00 0.00 +FBC 25 35.98 16.63 18.18 29.21 0.00 0.00 +FBC 26 36.94 15.28 21.08 26.69 0.00 0.00 +FBC 27 35.59 14.70 21.08 28.63 0.00 0.00 +FBC 28 34.62 15.47 17.60 32.30 0.00 0.00 +FBC 29 33.46 17.21 18.96 30.37 0.00 0.00 +FBC 30 37.72 13.54 19.15 29.59 0.00 0.00 +FBC 31 35.98 15.28 18.76 29.98 0.00 0.00 +FBC 32 35.98 14.89 18.96 30.17 0.00 0.00 +FBC 33 34.43 17.21 18.57 29.79 0.00 0.00 +FBC 34 35.40 16.63 17.60 30.37 0.00 0.00 +FBC 35 32.88 16.25 21.28 29.59 0.00 0.00 +FBC 36 36.36 18.96 17.21 27.47 0.00 0.00 +FBC 37 36.56 12.96 20.70 29.79 0.00 0.00 +FBC 38 37.52 15.67 18.96 27.85 0.00 0.00 +FBC 39 35.40 16.63 20.70 27.27 0.00 0.00 +FBC 40 38.68 15.86 17.99 27.47 0.00 0.00 +FBC 41 34.82 15.47 21.28 28.43 0.00 0.00 +FBC 42 33.85 16.25 19.15 30.75 0.00 0.00 +FBC 43 38.88 15.67 18.38 27.08 0.00 0.00 +FBC 44 37.52 13.54 19.54 29.40 0.00 0.00 +FBC 45 35.20 17.21 16.83 30.75 0.00 0.00 +FBC 46 34.43 16.44 21.08 28.05 0.00 0.00 +FBC 47 39.07 16.25 14.51 30.17 0.00 0.00 +FBC 48 38.10 14.89 18.38 28.63 0.00 0.00 +FBC 49 33.85 18.38 17.79 29.98 0.00 0.00 +FBC 50 32.69 16.05 20.70 30.56 0.00 0.00 +FBC 51 34.04 19.54 17.79 28.63 0.00 0.00 +FBC 52 37.14 16.25 19.54 27.08 0.00 0.00 +FBC 53 37.14 14.89 19.54 28.43 0.00 0.00 +FBC 54 33.66 14.12 19.73 32.50 0.00 0.00 +FBC 55 37.33 15.47 19.15 28.05 0.00 0.00 +FBC 56 35.40 19.34 20.31 24.95 0.00 0.00 +FBC 57 40.04 15.28 16.63 28.05 0.00 0.00 +FBC 58 36.17 17.41 18.57 27.85 0.00 0.00 +FBC 59 34.43 17.21 18.76 29.59 0.00 0.00 +FBC 60 36.94 17.79 20.50 24.76 0.00 0.00 +FBC 61 39.26 16.25 16.05 28.43 0.00 0.00 +FBC 62 35.59 14.89 20.50 29.01 0.00 0.00 +FBC 63 34.82 18.96 19.73 26.50 0.00 0.00 +FBC 64 33.08 19.15 22.63 25.15 0.00 0.00 +FBC 65 36.94 15.47 20.12 27.47 0.00 0.00 +FBC 66 40.04 12.57 17.41 29.98 0.00 0.00 +FBC 67 37.33 13.93 20.50 28.24 0.00 0.00 +FBC 68 34.62 16.63 16.63 32.11 0.00 0.00 +FBC 69 35.01 17.60 18.96 28.43 0.00 0.00 +FBC 70 34.62 17.99 18.76 28.63 0.00 0.00 +# ACGT raw counters for first fragments. Use `grep ^FTC | cut -f 2-` to extract this part. The columns are: A,C,G,T,N base counters +FTC 13046 5840 6902 10402 0 +# ACGT content per cycle for last fragments. Use `grep ^LBC | cut -f 2-` to extract this part. The columns are: cycle; A,C,G,T base counts as a percentage of all A/C/G/T bases [%]; and N and O counts as a percentage of all A/C/G/T bases [%] +LBC 1 34.44 14.94 22.61 28.01 0.00 0.00 +LBC 2 39.83 17.22 16.60 26.35 0.00 0.00 +LBC 3 38.38 14.11 17.22 30.29 0.00 0.00 +LBC 4 36.72 17.01 17.63 28.63 0.00 0.00 +LBC 5 35.89 16.60 17.63 29.88 0.00 0.00 +LBC 6 36.93 15.15 20.33 27.59 0.00 0.00 +LBC 7 34.44 18.05 19.09 28.42 0.00 0.00 +LBC 8 37.76 16.60 19.71 25.93 0.00 0.00 +LBC 9 39.42 15.77 16.80 28.01 0.00 0.00 +LBC 10 37.97 15.35 16.18 30.50 0.00 0.00 +LBC 11 33.82 18.88 19.29 28.01 0.00 0.00 +LBC 12 42.53 12.86 17.63 26.97 0.00 0.00 +LBC 13 33.82 16.39 18.05 31.74 0.00 0.00 +LBC 14 36.31 13.90 20.95 28.84 0.00 0.00 +LBC 15 32.57 15.77 20.95 30.71 0.00 0.00 +LBC 16 34.23 20.12 20.54 25.10 0.00 0.00 +LBC 17 33.82 12.66 23.24 30.29 0.00 0.00 +LBC 18 36.10 15.56 17.63 30.71 0.00 0.00 +LBC 19 38.80 13.90 19.92 27.39 0.00 0.00 +LBC 20 37.34 13.49 18.67 30.50 0.00 0.00 +LBC 21 34.44 14.11 19.50 31.95 0.00 0.00 +LBC 22 34.85 15.35 19.50 30.29 0.00 0.00 +LBC 23 35.27 18.46 17.84 28.42 0.00 0.00 +LBC 24 37.76 15.35 15.98 30.91 0.00 0.00 +LBC 25 40.04 13.90 19.50 26.56 0.00 0.00 +LBC 26 30.08 15.35 17.43 37.14 0.00 0.00 +LBC 27 32.57 14.11 20.33 32.99 0.00 0.00 +LBC 28 37.76 17.63 20.75 23.86 0.00 0.00 +LBC 29 38.80 12.66 15.98 32.57 0.00 0.00 +LBC 30 33.20 15.77 18.46 32.57 0.00 0.00 +LBC 31 39.21 13.49 20.95 26.35 0.00 0.00 +LBC 32 37.76 17.43 18.88 25.93 0.00 0.00 +LBC 33 37.14 18.46 18.05 26.35 0.00 0.00 +LBC 34 33.40 17.63 18.67 30.29 0.00 0.00 +LBC 35 35.48 14.73 23.44 26.35 0.00 0.00 +LBC 36 33.82 16.60 17.84 31.74 0.00 0.00 +LBC 37 35.27 17.22 19.92 27.59 0.00 0.00 +LBC 38 35.68 17.22 21.16 25.93 0.00 0.00 +LBC 39 38.17 15.56 17.84 28.42 0.00 0.00 +LBC 40 36.31 16.60 18.46 28.63 0.00 0.00 +LBC 41 35.89 15.15 17.63 31.33 0.00 0.00 +LBC 42 39.21 17.01 18.05 25.73 0.00 0.00 +LBC 43 33.61 17.43 19.71 29.25 0.00 0.00 +LBC 44 37.14 17.63 17.43 27.80 0.00 0.00 +LBC 45 37.76 15.35 18.67 28.22 0.00 0.00 +LBC 46 35.48 15.56 19.92 29.05 0.00 0.00 +LBC 47 36.31 14.32 20.33 29.05 0.00 0.00 +LBC 48 40.66 14.94 16.80 27.59 0.00 0.00 +LBC 49 37.14 15.15 16.39 31.33 0.00 0.00 +LBC 50 36.51 15.15 17.84 30.50 0.00 0.00 +LBC 51 39.21 16.39 17.84 26.56 0.00 0.00 +LBC 52 41.29 13.90 17.01 27.80 0.00 0.00 +LBC 53 37.55 17.01 17.84 27.59 0.00 0.00 +LBC 54 37.14 13.90 20.95 28.01 0.00 0.00 +LBC 55 36.31 18.88 18.88 25.93 0.00 0.00 +LBC 56 38.17 16.39 17.01 28.42 0.00 0.00 +LBC 57 39.21 16.80 15.56 28.42 0.00 0.00 +LBC 58 39.42 13.90 19.50 27.18 0.00 0.00 +LBC 59 36.31 17.84 19.29 26.56 0.00 0.00 +LBC 60 38.17 13.90 17.84 30.08 0.00 0.00 +LBC 61 34.44 18.46 17.84 29.25 0.00 0.00 +LBC 62 32.57 14.52 22.20 30.71 0.00 0.00 +LBC 63 38.38 14.94 15.98 30.71 0.00 0.00 +LBC 64 38.59 15.98 16.80 28.63 0.00 0.00 +LBC 65 35.06 16.18 19.71 29.05 0.00 0.00 +LBC 66 38.17 14.73 17.01 30.08 0.00 0.00 +LBC 67 37.55 17.01 18.88 26.56 0.00 0.00 +LBC 68 38.59 15.77 16.60 29.05 0.00 0.00 +LBC 69 40.46 13.69 18.88 26.97 0.00 0.00 +LBC 70 35.27 17.43 17.22 30.08 0.00 0.00 +# ACGT raw counters for last fragments. Use `grep ^LTC | cut -f 2-` to extract this part. The columns are: A,C,G,T,N base counters +LTC 12386 5337 6299 9718 0 +# Insert sizes. Use `grep ^IS | cut -f 2-` to extract this part. The columns are: insert size, pairs total, inward oriented pairs, outward oriented pairs, other pairs +IS 0 0 0 0 0 +IS 1 0 0 0 0 +IS 2 0 0 0 0 +IS 3 0 0 0 0 +IS 4 0 0 0 0 +IS 5 0 0 0 0 +IS 6 0 0 0 0 +IS 7 0 0 0 0 +IS 8 0 0 0 0 +IS 9 0 0 0 0 +IS 10 0 0 0 0 +IS 11 0 0 0 0 +IS 12 0 0 0 0 +IS 13 0 0 0 0 +IS 14 0 0 0 0 +IS 15 0 0 0 0 +IS 16 0 0 0 0 +IS 17 0 0 0 0 +IS 18 0 0 0 0 +IS 19 0 0 0 0 +IS 20 0 0 0 0 +IS 21 0 0 0 0 +IS 22 0 0 0 0 +IS 23 0 0 0 0 +IS 24 0 0 0 0 +IS 25 0 0 0 0 +IS 26 0 0 0 0 +IS 27 0 0 0 0 +IS 28 0 0 0 0 +IS 29 0 0 0 0 +IS 30 0 0 0 0 +IS 31 0 0 0 0 +IS 32 0 0 0 0 +IS 33 0 0 0 0 +IS 34 0 0 0 0 +IS 35 0 0 0 0 +IS 36 0 0 0 0 +IS 37 0 0 0 0 +IS 38 0 0 0 0 +IS 39 0 0 0 0 +IS 40 0 0 0 0 +IS 41 0 0 0 0 +IS 42 0 0 0 0 +IS 43 0 0 0 0 +IS 44 0 0 0 0 +IS 45 0 0 0 0 +IS 46 0 0 0 0 +IS 47 0 0 0 0 +IS 48 0 0 0 0 +IS 49 0 0 0 0 +IS 50 0 0 0 0 +IS 51 0 0 0 0 +IS 52 0 0 0 0 +IS 53 0 0 0 0 +IS 54 0 0 0 0 +IS 55 0 0 0 0 +IS 56 0 0 0 0 +IS 57 0 0 0 0 +IS 58 0 0 0 0 +IS 59 0 0 0 0 +IS 60 0 0 0 0 +IS 61 0 0 0 0 +IS 62 0 0 0 0 +IS 63 0 0 0 0 +IS 64 0 0 0 0 +IS 65 0 0 0 0 +IS 66 0 0 0 0 +IS 67 0 0 0 0 +IS 68 0 0 0 0 +IS 69 0 0 0 0 +IS 70 0 0 0 0 +IS 71 0 0 0 0 +IS 72 0 0 0 0 +IS 73 0 0 0 0 +IS 74 0 0 0 0 +IS 75 0 0 0 0 +IS 76 0 0 0 0 +IS 77 0 0 0 0 +IS 78 0 0 0 0 +IS 79 0 0 0 0 +IS 80 0 0 0 0 +IS 81 0 0 0 0 +IS 82 0 0 0 0 +IS 83 0 0 0 0 +IS 84 0 0 0 0 +IS 85 0 0 0 0 +IS 86 0 0 0 0 +IS 87 0 0 0 0 +IS 88 0 0 0 0 +IS 89 0 0 0 0 +IS 90 0 0 0 0 +IS 91 0 0 0 0 +IS 92 0 0 0 0 +IS 93 0 0 0 0 +IS 94 0 0 0 0 +IS 95 0 0 0 0 +IS 96 0 0 0 0 +IS 97 0 0 0 0 +IS 98 0 0 0 0 +IS 99 0 0 0 0 +IS 100 0 0 0 0 +IS 101 0 0 0 0 +IS 102 0 0 0 0 +IS 103 0 0 0 0 +IS 104 0 0 0 0 +IS 105 0 0 0 0 +IS 106 0 0 0 0 +IS 107 0 0 0 0 +IS 108 0 0 0 0 +IS 109 0 0 0 0 +IS 110 0 0 0 0 +IS 111 0 0 0 0 +IS 112 0 0 0 0 +IS 113 0 0 0 0 +IS 114 0 0 0 0 +IS 115 0 0 0 0 +IS 116 0 0 0 0 +IS 117 0 0 0 0 +IS 118 0 0 0 0 +IS 119 0 0 0 0 +IS 120 0 0 0 0 +IS 121 0 0 0 0 +IS 122 0 0 0 0 +IS 123 0 0 0 0 +IS 124 0 0 0 0 +IS 125 0 0 0 0 +IS 126 0 0 0 0 +IS 127 0 0 0 0 +IS 128 0 0 0 0 +IS 129 0 0 0 0 +IS 130 0 0 0 0 +IS 131 0 0 0 0 +IS 132 0 0 0 0 +IS 133 0 0 0 0 +IS 134 0 0 0 0 +IS 135 0 0 0 0 +IS 136 0 0 0 0 +IS 137 0 0 0 0 +IS 138 0 0 0 0 +IS 139 0 0 0 0 +IS 140 0 0 0 0 +IS 141 0 0 0 0 +IS 142 0 0 0 0 +IS 143 0 0 0 0 +IS 144 0 0 0 0 +IS 145 0 0 0 0 +IS 146 0 0 0 0 +IS 147 0 0 0 0 +IS 148 0 0 0 0 +IS 149 0 0 0 0 +IS 150 0 0 0 0 +IS 151 0 0 0 0 +IS 152 0 0 0 0 +IS 153 0 0 0 0 +IS 154 0 0 0 0 +IS 155 0 0 0 0 +IS 156 0 0 0 0 +IS 157 0 0 0 0 +IS 158 0 0 0 0 +IS 159 0 0 0 0 +IS 160 0 0 0 0 +IS 161 0 0 0 0 +IS 162 0 0 0 0 +IS 163 0 0 0 0 +IS 164 0 0 0 0 +IS 165 0 0 0 0 +IS 166 0 0 0 0 +IS 167 0 0 0 0 +IS 168 0 0 0 0 +IS 169 0 0 0 0 +IS 170 0 0 0 0 +IS 171 0 0 0 0 +IS 172 0 0 0 0 +IS 173 0 0 0 0 +IS 174 0 0 0 0 +IS 175 0 0 0 0 +IS 176 0 0 0 0 +IS 177 0 0 0 0 +IS 178 0 0 0 0 +IS 179 0 0 0 0 +IS 180 0 0 0 0 +IS 181 0 0 0 0 +IS 182 0 0 0 0 +IS 183 0 0 0 0 +IS 184 0 0 0 0 +IS 185 0 0 0 0 +IS 186 0 0 0 0 +IS 187 0 0 0 0 +IS 188 0 0 0 0 +IS 189 0 0 0 0 +IS 190 0 0 0 0 +IS 191 0 0 0 0 +IS 192 0 0 0 0 +IS 193 0 0 0 0 +IS 194 0 0 0 0 +IS 195 0 0 0 0 +IS 196 0 0 0 0 +IS 197 0 0 0 0 +IS 198 0 0 0 0 +IS 199 0 0 0 0 +IS 200 0 0 0 0 +IS 201 0 0 0 0 +IS 202 0 0 0 0 +IS 203 0 0 0 0 +IS 204 0 0 0 0 +IS 205 0 0 0 0 +IS 206 0 0 0 0 +IS 207 0 0 0 0 +IS 208 0 0 0 0 +IS 209 0 0 0 0 +IS 210 0 0 0 0 +IS 211 0 0 0 0 +IS 212 0 0 0 0 +IS 213 0 0 0 0 +IS 214 0 0 0 0 +IS 215 0 0 0 0 +IS 216 0 0 0 0 +IS 217 0 0 0 0 +IS 218 0 0 0 0 +IS 219 0 0 0 0 +IS 220 0 0 0 0 +IS 221 0 0 0 0 +IS 222 0 0 0 0 +IS 223 0 0 0 0 +IS 224 0 0 0 0 +IS 225 0 0 0 0 +IS 226 0 0 0 0 +IS 227 0 0 0 0 +IS 228 0 0 0 0 +IS 229 0 0 0 0 +IS 230 0 0 0 0 +IS 231 0 0 0 0 +IS 232 0 0 0 0 +IS 233 0 0 0 0 +IS 234 0 0 0 0 +IS 235 0 0 0 0 +IS 236 0 0 0 0 +IS 237 0 0 0 0 +IS 238 0 0 0 0 +IS 239 0 0 0 0 +IS 240 0 0 0 0 +IS 241 0 0 0 0 +IS 242 0 0 0 0 +IS 243 0 0 0 0 +IS 244 0 0 0 0 +IS 245 0 0 0 0 +IS 246 0 0 0 0 +IS 247 0 0 0 0 +IS 248 0 0 0 0 +IS 249 0 0 0 0 +IS 250 0 0 0 0 +IS 251 0 0 0 0 +IS 252 0 0 0 0 +IS 253 0 0 0 0 +IS 254 0 0 0 0 +IS 255 0 0 0 0 +IS 256 0 0 0 0 +IS 257 0 0 0 0 +IS 258 0 0 0 0 +IS 259 0 0 0 0 +IS 260 0 0 0 0 +IS 261 0 0 0 0 +IS 262 0 0 0 0 +IS 263 0 0 0 0 +IS 264 0 0 0 0 +IS 265 0 0 0 0 +IS 266 0 0 0 0 +IS 267 0 0 0 0 +IS 268 0 0 0 0 +IS 269 0 0 0 0 +IS 270 0 0 0 0 +IS 271 0 0 0 0 +IS 272 0 0 0 0 +IS 273 0 0 0 0 +IS 274 0 0 0 0 +IS 275 0 0 0 0 +IS 276 0 0 0 0 +IS 277 0 0 0 0 +IS 278 0 0 0 0 +IS 279 0 0 0 0 +IS 280 0 0 0 0 +IS 281 0 0 0 0 +IS 282 0 0 0 0 +IS 283 0 0 0 0 +IS 284 0 0 0 0 +IS 285 0 0 0 0 +IS 286 0 0 0 0 +IS 287 0 0 0 0 +IS 288 0 0 0 0 +IS 289 0 0 0 0 +IS 290 0 0 0 0 +IS 291 0 0 0 0 +IS 292 0 0 0 0 +IS 293 0 0 0 0 +IS 294 0 0 0 0 +IS 295 0 0 0 0 +IS 296 0 0 0 0 +IS 297 0 0 0 0 +IS 298 0 0 0 0 +IS 299 0 0 0 0 +IS 300 0 0 0 0 +IS 301 0 0 0 0 +IS 302 0 0 0 0 +IS 303 0 0 0 0 +IS 304 0 0 0 0 +IS 305 0 0 0 0 +IS 306 0 0 0 0 +IS 307 0 0 0 0 +IS 308 0 0 0 0 +IS 309 0 0 0 0 +IS 310 0 0 0 0 +IS 311 0 0 0 0 +IS 312 0 0 0 0 +IS 313 0 0 0 0 +IS 314 0 0 0 0 +IS 315 0 0 0 0 +IS 316 0 0 0 0 +IS 317 0 0 0 0 +IS 318 0 0 0 0 +IS 319 0 0 0 0 +IS 320 0 0 0 0 +IS 321 0 0 0 0 +IS 322 0 0 0 0 +IS 323 0 0 0 0 +IS 324 0 0 0 0 +IS 325 0 0 0 0 +IS 326 0 0 0 0 +IS 327 0 0 0 0 +IS 328 0 0 0 0 +IS 329 0 0 0 0 +IS 330 0 0 0 0 +IS 331 0 0 0 0 +IS 332 0 0 0 0 +IS 333 0 0 0 0 +IS 334 0 0 0 0 +IS 335 0 0 0 0 +IS 336 0 0 0 0 +IS 337 0 0 0 0 +IS 338 0 0 0 0 +IS 339 0 0 0 0 +IS 340 0 0 0 0 +IS 341 0 0 0 0 +IS 342 0 0 0 0 +IS 343 0 0 0 0 +IS 344 0 0 0 0 +IS 345 0 0 0 0 +IS 346 0 0 0 0 +IS 347 0 0 0 0 +IS 348 0 0 0 0 +IS 349 0 0 0 0 +IS 350 0 0 0 0 +IS 351 0 0 0 0 +IS 352 0 0 0 0 +IS 353 0 0 0 0 +IS 354 0 0 0 0 +IS 355 0 0 0 0 +IS 356 0 0 0 0 +IS 357 0 0 0 0 +IS 358 0 0 0 0 +IS 359 0 0 0 0 +IS 360 0 0 0 0 +IS 361 0 0 0 0 +IS 362 0 0 0 0 +IS 363 0 0 0 0 +IS 364 0 0 0 0 +IS 365 0 0 0 0 +IS 366 0 0 0 0 +IS 367 0 0 0 0 +IS 368 0 0 0 0 +IS 369 1 1 0 0 +IS 370 0 0 0 0 +IS 371 0 0 0 0 +IS 372 0 0 0 0 +IS 373 0 0 0 0 +IS 374 0 0 0 0 +IS 375 0 0 0 0 +IS 376 0 0 0 0 +IS 377 0 0 0 0 +IS 378 0 0 0 0 +IS 379 0 0 0 0 +IS 380 0 0 0 0 +IS 381 0 0 0 0 +IS 382 0 0 0 0 +IS 383 0 0 0 0 +IS 384 0 0 0 0 +IS 385 0 0 0 0 +IS 386 0 0 0 0 +IS 387 0 0 0 0 +IS 388 0 0 0 0 +IS 389 0 0 0 0 +IS 390 0 0 0 0 +IS 391 0 0 0 0 +IS 392 0 0 0 0 +IS 393 0 0 0 0 +IS 394 0 0 0 0 +IS 395 0 0 0 0 +IS 396 0 0 0 0 +IS 397 1 1 0 0 +IS 398 0 0 0 0 +IS 399 0 0 0 0 +IS 400 0 0 0 0 +IS 401 1 1 0 0 +IS 402 0 0 0 0 +IS 403 1 1 0 0 +IS 404 0 0 0 0 +IS 405 0 0 0 0 +IS 406 0 0 0 0 +IS 407 0 0 0 0 +IS 408 2 2 0 0 +IS 409 0 0 0 0 +IS 410 0 0 0 0 +IS 411 0 0 0 0 +IS 412 0 0 0 0 +IS 413 0 0 0 0 +IS 414 1 1 0 0 +IS 415 0 0 0 0 +IS 416 2 2 0 0 +IS 417 1 1 0 0 +IS 418 0 0 0 0 +IS 419 0 0 0 0 +IS 420 0 0 0 0 +IS 421 0 0 0 0 +IS 422 0 0 0 0 +IS 423 2 2 0 0 +IS 424 0 0 0 0 +IS 425 0 0 0 0 +IS 426 2 2 0 0 +IS 427 0 0 0 0 +IS 428 1 1 0 0 +IS 429 0 0 0 0 +IS 430 0 0 0 0 +IS 431 2 2 0 0 +IS 432 2 2 0 0 +IS 433 3 3 0 0 +IS 434 0 0 0 0 +IS 435 2 2 0 0 +IS 436 1 1 0 0 +IS 437 1 1 0 0 +IS 438 0 0 0 0 +IS 439 1 1 0 0 +IS 440 2 2 0 0 +IS 441 2 2 0 0 +IS 442 1 1 0 0 +IS 443 1 1 0 0 +IS 444 3 3 0 0 +IS 445 1 1 0 0 +IS 446 2 2 0 0 +IS 447 2 2 0 0 +IS 448 1 1 0 0 +IS 449 2 2 0 0 +IS 450 1 1 0 0 +IS 451 4 4 0 0 +IS 452 1 1 0 0 +IS 453 3 3 0 0 +IS 454 0 0 0 0 +IS 455 3 3 0 0 +IS 456 3 3 0 0 +IS 457 3 3 0 0 +IS 458 1 1 0 0 +IS 459 2 2 0 0 +IS 460 3 3 0 0 +IS 461 3 3 0 0 +IS 462 4 4 0 0 +IS 463 4 4 0 0 +IS 464 2 2 0 0 +IS 465 2 2 0 0 +IS 466 3 3 0 0 +IS 467 3 3 0 0 +IS 468 4 4 0 0 +IS 469 4 4 0 0 +IS 470 4 4 0 0 +IS 471 3 3 0 0 +IS 472 4 4 0 0 +IS 473 2 2 0 0 +IS 474 3 3 0 0 +IS 475 5 5 0 0 +IS 476 4 4 0 0 +IS 477 4 4 0 0 +IS 478 3 3 0 0 +IS 479 2 2 0 0 +IS 480 4 4 0 0 +IS 481 3 3 0 0 +IS 482 4 4 0 0 +IS 483 2 2 0 0 +IS 484 2 2 0 0 +IS 485 4 4 0 0 +IS 486 2 2 0 0 +IS 487 5 5 0 0 +IS 488 5 5 0 0 +IS 489 3 3 0 0 +IS 490 2 2 0 0 +IS 491 5 5 0 0 +IS 492 3 3 0 0 +IS 493 3 3 0 0 +IS 494 4 4 0 0 +IS 495 3 3 0 0 +IS 496 2 2 0 0 +IS 497 4 4 0 0 +IS 498 2 2 0 0 +IS 499 5 5 0 0 +IS 500 5 5 0 0 +IS 501 5 5 0 0 +IS 502 5 5 0 0 +IS 503 5 5 0 0 +IS 504 5 5 0 0 +IS 505 3 3 0 0 +IS 506 6 6 0 0 +IS 507 3 3 0 0 +IS 508 7 7 0 0 +IS 509 2 2 0 0 +IS 510 3 3 0 0 +IS 511 1 1 0 0 +IS 512 6 6 0 0 +IS 513 3 3 0 0 +IS 514 5 5 0 0 +IS 515 6 6 0 0 +IS 516 5 5 0 0 +IS 517 2 2 0 0 +IS 518 3 3 0 0 +IS 519 3 3 0 0 +IS 520 4 4 0 0 +IS 521 3 3 0 0 +IS 522 4 4 0 0 +IS 523 5 5 0 0 +IS 524 1 1 0 0 +IS 525 4 4 0 0 +IS 526 4 4 0 0 +IS 527 4 4 0 0 +IS 528 2 2 0 0 +IS 529 4 4 0 0 +IS 530 3 3 0 0 +IS 531 5 5 0 0 +IS 532 5 5 0 0 +IS 533 5 5 0 0 +IS 534 4 4 0 0 +IS 535 3 3 0 0 +IS 536 2 2 0 0 +IS 537 1 1 0 0 +IS 538 2 2 0 0 +IS 539 2 2 0 0 +IS 540 2 2 0 0 +IS 541 3 3 0 0 +IS 542 4 4 0 0 +IS 543 0 0 0 0 +IS 544 4 4 0 0 +IS 545 2 2 0 0 +IS 546 1 1 0 0 +IS 547 2 2 0 0 +IS 548 1 1 0 0 +IS 549 2 2 0 0 +IS 550 2 2 0 0 +IS 551 0 0 0 0 +IS 552 3 3 0 0 +IS 553 3 3 0 0 +IS 554 1 1 0 0 +IS 555 1 1 0 0 +IS 556 3 3 0 0 +IS 557 3 3 0 0 +IS 558 2 2 0 0 +IS 559 2 2 0 0 +IS 560 4 4 0 0 +IS 561 2 2 0 0 +IS 562 0 0 0 0 +IS 563 1 1 0 0 +IS 564 2 2 0 0 +IS 565 1 1 0 0 +IS 566 2 2 0 0 +IS 567 1 1 0 0 +IS 568 1 1 0 0 +IS 569 1 1 0 0 +IS 570 1 1 0 0 +IS 571 1 1 0 0 +IS 572 1 1 0 0 +IS 573 2 2 0 0 +IS 574 1 1 0 0 +IS 575 0 0 0 0 +IS 576 2 2 0 0 +IS 577 1 1 0 0 +IS 578 1 1 0 0 +IS 579 1 1 0 0 +IS 580 1 1 0 0 +IS 581 1 1 0 0 +IS 582 2 2 0 0 +IS 583 1 1 0 0 +IS 584 1 1 0 0 +IS 585 1 1 0 0 +IS 586 1 1 0 0 +IS 587 1 1 0 0 +IS 588 1 1 0 0 +IS 589 0 0 0 0 +IS 590 1 1 0 0 +IS 591 0 0 0 0 +IS 592 0 0 0 0 +IS 593 0 0 0 0 +IS 594 1 1 0 0 +IS 595 1 1 0 0 +IS 596 1 1 0 0 +# Read lengths. Use `grep ^RL | cut -f 2-` to extract this part. The columns are: read length, count +RL 70 999 +# Read lengths - first fragments. Use `grep ^FRL | cut -f 2-` to extract this part. The columns are: read length, count +FRL 70 517 +# Read lengths - last fragments. Use `grep ^LRL | cut -f 2-` to extract this part. The columns are: read length, count +LRL 70 482 +# Mapping qualities for reads !(UNMAP|SECOND|SUPPL|QCFAIL|DUP). Use `grep ^MAPQ | cut -f 2-` to extract this part. The columns are: mapq, count +MAPQ 60 999 +# Indel distribution. Use `grep ^ID | cut -f 2-` to extract this part. The columns are: length, number of insertions, number of deletions +ID 2 0 5 +# Indels per cycle. Use `grep ^IC | cut -f 2-` to extract this part. The columns are: cycle, number of insertions (fwd), .. (rev) , number of deletions (fwd), .. (rev) +IC 8 0 0 0 1 +IC 18 0 0 1 0 +IC 20 0 0 1 0 +IC 37 0 0 1 0 +IC 40 0 0 1 0 +# Coverage distribution. Use `grep ^COV | cut -f 2-` to extract this part. +COV [1-1] 1 1130 +COV [2-2] 2 1320 +COV [3-3] 3 1627 +COV [4-4] 4 2414 +COV [5-5] 5 2306 +COV [6-6] 6 1678 +COV [7-7] 7 1053 +COV [8-8] 8 890 +COV [9-9] 9 578 +COV [10-10] 10 228 +COV [11-11] 11 255 +COV [12-12] 12 124 +COV [13-13] 13 105 +COV [14-14] 14 52 +COV [15-15] 15 33 +COV [16-16] 16 38 +COV [17-17] 17 7 +COV [18-18] 18 3 +COV [19-19] 19 6 +COV [20-20] 20 4 +COV [21-21] 21 7 +# GC-depth. Use `grep ^GCD | cut -f 2-` to extract this part. The columns are: GC%, unique sequence percentiles, 10th, 25th, 50th, 75th and 90th depth percentile +GCD 0.0 16.667 0.000 0.000 0.000 0.000 0.000 +GCD 13.3 25.000 0.126 0.126 0.126 0.126 0.126 +GCD 32.0 33.333 0.490 0.490 0.490 0.490 0.490 +GCD 33.0 41.667 0.507 0.507 0.507 0.507 0.507 +GCD 34.0 50.000 0.298 0.298 0.298 0.298 0.298 +GCD 35.0 66.667 0.203 0.203 0.415 0.627 0.627 +GCD 36.0 100.000 0.199 0.199 0.228 0.400 0.448