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environment.yaml
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environment.yaml
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name: strainscan
channels:
- conda-forge
- r
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- bidict=0.21.3=pyhd8ed1ab_0
- binutils_impl_linux-64=2.36.1=h193b22a_2
- binutils_linux-64=2.36=hf3e587d_33
- biopython=1.74=py37h516909a_0
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- ca-certificates=2021.10.8=ha878542_0
- cairo=1.16.0=h9f066cc_1006
- certifi=2021.10.8=py37h89c1867_1
- click=8.0.3=py37h89c1867_1
- curl=7.71.1=he644dc0_3
- cycler=0.11.0=pyhd8ed1ab_0
- psutil=5.9.1
- fontconfig=2.13.1=hba837de_1005
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=7.5.0=hda68d29_13
- gcc_linux-64=7.5.0=h47867f9_33
- gettext=0.19.8.1=hf34092f_1004
- gfortran_impl_linux-64=7.5.0=h56cb351_19
- gfortran_linux-64=7.5.0=h78c8a43_33
- glib=2.66.3=h58526e2_0
- graphite2=1.3.13=h58526e2_1001
- gsl=2.6=he838d99_2
- gxx_impl_linux-64=7.5.0=h64c220c_13
- gxx_linux-64=7.5.0=h555fc39_33
- harfbuzz=2.7.2=ha5b49bf_1
- icu=67.1=he1b5a44_0
- importlib-metadata=4.10.0=py37h89c1867_0
- joblib=1.1.0=pyhd8ed1ab_0
- jpeg=9d=h36c2ea0_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- kiwisolver=1.3.2=py37h2527ec5_1
- krb5=1.17.2=h926e7f8_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- libblas=3.9.0=8_openblas
- libcblas=3.9.0=8_openblas
- libcurl=7.71.1=hcdd3856_3
- libdeflate=1.0=h14c3975_1
- libedit=3.1.20191231=he28a2e2_2
- libffi=3.2.1=he1b5a44_1007
- libgcc-ng=11.2.0=h1d223b6_11
- libgfortran-ng=7.5.0=h14aa051_19
- libgfortran4=7.5.0=h14aa051_19
- libglib=2.66.3=hbe7bbb4_0
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=8_openblas
- libopenblas=0.3.12=pthreads_hb3c22a3_1
- libpng=1.6.37=h21135ba_2
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=he4da1e4_11
- libtiff=4.2.0=hf544144_3
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.1=h7f98852_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.10=h68273f3_2
- libzlib=1.2.11=h36c2ea0_1013
- lz4-c=1.9.3=h9c3ff4c_1
- maf2synteny=1.2=h1b792b2_0
- make=4.3=hd18ef5c_1
- matplotlib=3.3.2=0
- matplotlib-base=3.3.2=py37h4f6019d_1
- mummer=3.23=4
- ncurses=6.2=h58526e2_4
- numpy=1.17.3=py37h95a1406_0
- olefile=0.46=pyh9f0ad1d_1
- openjpeg=2.4.0=hb52868f_1
- openssl=1.1.1l=h7f98852_0
- pandas=1.0.1=py37hb3f55d8_0
- pango=1.42.4=h69149e4_5
- pcre=8.45=h9c3ff4c_0
- pcre2=10.35=h032f7d1_2
- perl=5.32.1=1_h7f98852_perl5
- perl-threaded=5.26.0=0
- pillow=8.2.0=py37h4600e1f_1
- pip=21.3.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- pyparsing=3.0.6=pyhd8ed1ab_0
- pysam=0.15.3=py37hda2845c_1
- python=3.7.3=h357f687_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.7=2_cp37m
- pytz=2021.3=pyhd8ed1ab_0
- r-ape=5.6=r40h306847c_0
- r-assertthat=0.2.1=r40hc72bb7e_2
- r-backports=1.4.1=r40hcfec24a_0
- r-base=4.0.2=he766273_1
- r-brio=1.1.3=r40hcfec24a_0
- r-callr=3.7.0=r40hc72bb7e_0
- r-cli=3.1.0=r40h03ef668_0
- r-colorspace=2.0_2=r40hcfec24a_0
- r-crayon=1.4.2=r40hc72bb7e_0
- r-desc=1.4.0=r40hc72bb7e_0
- r-diffobj=0.3.5=r40hcfec24a_0
- r-digest=0.6.29=r40h03ef668_0
- r-ellipsis=0.3.2=r40hcfec24a_0
- r-evaluate=0.14=r40hc72bb7e_2
- r-fansi=0.5.0=r40hcfec24a_0
- r-farver=2.1.0=r40h03ef668_0
- r-ggplot2=3.3.3=r40hc72bb7e_0
- r-glue=1.6.0=r40hcfec24a_0
- r-gtable=0.3.0=r40hc72bb7e_3
- r-isoband=0.2.5=r40h03ef668_0
- r-jsonlite=1.7.2=r40hcfec24a_0
- r-labeling=0.4.2=r40hc72bb7e_0
- r-lattice=0.20_45=r40hcfec24a_0
- r-lifecycle=1.0.1=r40hc72bb7e_0
- r-magrittr=2.0.1=r40hcfec24a_1
- r-mass=7.3_54=r40hcfec24a_0
- r-matrix=1.4_0=r40he454529_0
- r-mgcv=1.8_38=r40he454529_0
- r-munsell=0.5.0=r40hc72bb7e_1003
- r-nlme=3.1_150=r40h31ca83e_0
- r-pillar=1.6.4=r40hc72bb7e_0
- r-pkgconfig=2.0.3=r40hc72bb7e_1
- r-pkgload=1.2.4=r40h03ef668_0
- r-praise=1.0.0=r40hc72bb7e_1004
- r-processx=3.5.2=r40hcfec24a_0
- r-ps=1.6.0=r40hcfec24a_0
- r-r6=2.5.1=r40hc72bb7e_0
- r-rcolorbrewer=1.1_2=r40h785f33e_1003
- r-rcpp=1.0.7=r40h03ef668_0
- r-rematch2=2.1.2=r40hc72bb7e_1
- r-rlang=0.4.12=r40hcfec24a_0
- r-rprojroot=2.0.2=r40hc72bb7e_0
- r-rstudioapi=0.13=r40hc72bb7e_0
- r-scales=1.1.1=r40hc72bb7e_0
- r-testthat=3.1.1=r40h03ef668_0
- r-tibble=3.1.6=r40hcfec24a_0
- r-utf8=1.2.2=r40hcfec24a_0
- r-vctrs=0.3.8=r40hcfec24a_1
- r-viridislite=0.4.0=r40hc72bb7e_0
- r-waldo=0.3.1=r40hc72bb7e_0
- r-withr=2.4.3=r40hc72bb7e_0
- readline=8.1=h46c0cb4_0
- scikit-learn=0.23.1=py37h8a51577_0
- scipy=1.3.1=py37h921218d_2
- sed=4.8=he412f7d_0
- setuptools=60.0.3=py37h89c1867_0
- sibeliaz=1.2.2=he711bca_1
- six=1.16.0=pyh6c4a22f_0
- spoa=4.0.3=he513fc3_0
- sqlite=3.37.0=h9cd32fc_0
- strainest=1.2.4=py37h6bb024c_3
- sysroot_linux-64=2.12=he073ed8_15
- tbb=2020.2=h4bd325d_4
- threadpoolctl=3.0.0=pyh8a188c0_0
- tk=8.6.11=h27826a3_1
- tktable=2.10=hb7b940f_3
- tornado=6.1=py37h5e8e339_2
- treelib=1.6.1=pyh9f0ad1d_0
- twopaco=0.9.4=he711bca_1
- typing_extensions=4.0.1=pyha770c72_0
- wheel=0.37.0=pyhd8ed1ab_1
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- zipp=3.6.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.0=ha95c52a_0