snakemake profiles to atapt snakemake to run in specific cluster configurations
- Version: 0.1.0
- Authors:
- Nick Youngblut [email protected]
- Maintainers:
- Nick Youngblut [email protected]
For an intro into snakemake profiles, see the snakemake docs
This repo only contains a couple of custom profiles that have been tested to work with the clusters used by members of the Ley Lab. For more (generalized) profiles, see the snakemake-profiles repo
Copy the sge directory from this repo to ~/.config/snakemake/:
$ mkdir -p ~/.config/snakemake/
$ chmod u+x sge/*.py
$ cp -r sge ~/.config/snakemake/
Copy the slurm directory from this repo to ~/.config/snakemake/:
$ mkdir -p ~/.config/snakemake/
$ chmod u+x slurm/*.py
$ cp -r slurm ~/.config/snakemake/