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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(dimsum)
export(dimsum__add_dropout_pseudocount)
export(dimsum__aggregate_AA_variants)
export(dimsum__aggregate_AA_variants_fitness)
export(dimsum__bayesian_double_fitness)
export(dimsum__calculate_fitness)
export(dimsum__cbind_fill)
export(dimsum__check_barcode_design)
export(dimsum__check_barcodeidentityfile)
export(dimsum__check_countfile)
export(dimsum__check_experiment_design)
export(dimsum__check_experiment_design_countfile)
export(dimsum__check_files_exist)
export(dimsum__check_variants)
export(dimsum__concatenate_reads)
export(dimsum__convert_linked_adapters)
export(dimsum__create_dir)
export(dimsum__cutadapt_report)
export(dimsum__debarcode_variants)
export(dimsum__demultiplex_cp_helper)
export(dimsum__demultiplex_helper)
export(dimsum__derange_df)
export(dimsum__detect_sequence_type)
export(dimsum__diagnostics_report)
export(dimsum__error_model)
export(dimsum__error_model_qqplot)
export(dimsum__fastqc_report)
export(dimsum__filter_nuc_variants)
export(dimsum__filter_reads)
export(dimsum__filter_reads_helper)
export(dimsum__filter_single_end_reads)
export(dimsum__filter_variants_coding)
export(dimsum__filter_variants_noncoding)
export(dimsum__fit_error_model)
export(dimsum__fit_error_model_bootstrap)
export(dimsum__get_barcode_design)
export(dimsum__get_cutadapt_options)
export(dimsum__get_experiment_design)
export(dimsum__get_synonymsequences)
export(dimsum__gg_color_hue)
export(dimsum__ggpairs_binhex)
export(dimsum__hamming_distance)
export(dimsum__identify_STOP_mutations)
export(dimsum__identify_double_aa_mutations)
export(dimsum__identify_double_nt_mutations)
export(dimsum__identify_permitted_mutations)
export(dimsum__identify_single_aa_mutations)
export(dimsum__identify_single_nt_mutations)
export(dimsum__infer_growth_rates)
export(dimsum__merge_fitness)
export(dimsum__merge_report)
export(dimsum__normalise_fitness)
export(dimsum__parse_cutadapt_output)
export(dimsum__parse_cutadapt_output_single_end)
export(dimsum__parse_minimum_read_count_arguments)
export(dimsum__plot_samplename)
export(dimsum__process_merged_variants)
export(dimsum__range_df)
export(dimsum__remove_internal_constant_region)
export(dimsum__render_report)
export(dimsum__replicate_fitness_deviation)
export(dimsum__sample_count_distributions)
export(dimsum__save_metadata)
export(dimsum__save_png)
export(dimsum__status_message)
export(dimsum__sum_datatable_columns)
export(dimsum__swap_reads)
export(dimsum__unique_helper)
export(dimsum__unzip_helper)
export(dimsum__validate_input)
export(dimsum__vsearch_report)
export(dimsum__vsearch_single_end_library_helper)
export(dimsum__vsearch_trans_library_helper)
export(dimsum__writeFastq)
export(dimsum_stage_counts_to_fitness)
export(dimsum_stage_cutadapt)
export(dimsum_stage_demultiplex)
export(dimsum_stage_fastqc)
export(dimsum_stage_merge)
export(dimsum_stage_unique)
export(dimsum_stage_unzip)
export(dimsum_stage_vsearch)
import(data.table)