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Subcommand: info

Lucas Czech edited this page Jun 19, 2019 · 3 revisions

Print basic information about placement files.

Usage: gappa examine info [options]

Options

Input
--jplace-path Required. TEXT:PATH(existing)=[] ...
List of jplace files or directories to process. For directories, only files with the extension .jplace are processed.
Global Options
--allow-file-overwriting Allow to overwrite existing output files instead of aborting the command.
--verbose Produce more verbose output.
--threads UINT
Number of threads to use for calculations.
--log-file TEXT
Write all output to a log file, in addition to standard output to the terminal.

Description

The command simply prints a table describing the sample names (the file name without the extension), the number of branches and leaves of the reference tree, as well as the number of pqueries for each input jplace file.

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