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runLimits_run2exo_new.py
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runLimits_run2exo_new.py
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#! /usr/bin/env python
import os
import glob
import math
from array import array
import sys
import time
import subprocess
import ROOT
from optparse import OptionParser
from subprocess import Popen
from ROOT import gROOT, gStyle, gSystem, TLatex, TGaxis, TPaveText, TH2D, TColor, gPad, TGraph2D, TLine,TGraph,TList,TPad
import ROOT as rt
ROOT.gStyle.SetPadRightMargin(0.16);
from collections import defaultdict
############################################
# Job steering #
############################################
parser = OptionParser()
parser.add_option('-b', action='store_true', dest='noX', default=False, help='no X11 windows')
parser.add_option('-f', '--treeFolder', action="store", type="string", dest="treeFolder", default="./")
### basic allowed methods
parser.add_option('--makeCards', action='store_true', dest='makeCards', default=False, help='options to produce datacards and workspaces via fitting analysis')
parser.add_option('--computeLimits', action='store_true', dest='computeLimits', default=False, help='basic option in order to compute asymptotic limits')
parser.add_option('--plotLimits', action='store_true', dest='plotLimits', default=False, help='basic option to plot asymptotic and pvalue')
parser.add_option('--computePvalue', action='store_true', dest='computePvalue', default=False, help='basic option to plot asymptotic and pvalue')
parser.add_option('--computeSignif', action='store_true', dest='computeSignif', default=False, help='basic option to plot asymptotic and pvalue')
parser.add_option('--biasStudy', action='store_true', dest='biasStudy', default=False, help='basic option to perform bias study with our own tool')
parser.add_option('--maximumLikelihoodFit', action='store_true', dest='maximumLikelihoodFit', default=False, help='basic option to run max Likelihood fit inside combination tool')
parser.add_option('--asymptotic', action='store_true', dest='asymptotic', default=False, help='basic option to run asymptotic CLS inside combination tool')
parser.add_option('--fullCLs', action='store_true', dest='fullCLs', default=False, help='basic option to run full CLS inside combination tool')
parser.add_option('--generateOnly', action='store_true', dest='generateOnly', default=False, help='basic option to run the only generation with combiner')
parser.add_option('--makeLikelihoodScan', action='store_true', dest='makeLikelihoodScan', default=False, help='basic option to run the likelihood scan')
##### submit jobs to condor, lxbatch and hercules
parser.add_option('--batchMode', action='store_true', dest='batchMode', default=False, help='to run jobs on condor fnal')
parser.add_option('--lxbatchCern', action='store_true', dest='lxbatchCern', default=False, help='run jobs on lxbatch system at cern, default is condor fnal')
parser.add_option('--herculesMilano', action='store_true', dest='herculesMilano', default=False, help='run jobs on hercules system at Milano, default is condor fnal')
##### other basci options for all the methods
parser.add_option('--datacardDIR', action="store", type="string", dest="datacardDIR", default="")
parser.add_option('--category', action="store", type="string", dest="category", default="HP")
parser.add_option('--channel', action="store", type="string", dest="channel", default="em")
parser.add_option('--queque', action="store", type="string", dest="queque", default="")
parser.add_option('--pseudodata', action="store", type="int", dest="pseudodata", default=0)
parser.add_option('--systematics', action="store", type="int", dest="systematics", default=1)
parser.add_option('--massPoint', action="store", type="int", dest="massPoint", default=-1)
parser.add_option('--closuretest', action="store", type="int", dest="closuretest", default=0)
parser.add_option('--cPrime', action="store", type="int", dest="cPrime", default=-1)
parser.add_option('--brNew', action="store", type="int", dest="brNew", default=-1)
parser.add_option('--odir', action="store", type="string", dest="odir", default=".")
parser.add_option('--sigChannel', action="store", type="string", dest="sigChannel", default="")
parser.add_option('--jetBin', action="store", type="string", dest="jetBin", default="")
parser.add_option('--skipJetSystematics', action="store", type="int", dest="skipJetSystematics", default=0)
parser.add_option('--turnOnAnalysis', action="store", type="int", dest="turnOnAnalysis", default=0)
parser.add_option('--injectSingalStrenght', action="store", type=float, dest="injectSingalStrenght", default=0., help='inject a singal in the toy generation')
parser.add_option('--higgsCombination', action="store", type="int", dest="higgsCombination", default=0)
parser.add_option('--interferenceModel', action="store", type="string", dest="interferenceModel", default="3")
###### options for Bias test in the combination tool
parser.add_option('--nToys', action="store", type="int", dest="nToys", default=0)
parser.add_option('--crossedToys', action="store", type="int", dest="crossedToys", default=0)
parser.add_option('--inputGeneratedDataset', action="store", type="string", dest="inputGeneratedDataset", default="")
parser.add_option('--outputTree', action="store", type="int", dest="outputTree", default=0)
##### options specific for the bias tool
parser.add_option('--shapetest', action="store", type="int", dest="shapetest", default=0)
parser.add_option('--ttbarcontrolregion', action="store", type="int", dest="ttbarcontrolregion", default=0)
parser.add_option('--mlvjregion', action="store", type="string", dest="mlvjregion", default="_sb_lo")
parser.add_option('--fitjetmass', action="store", type="int", dest="fitjetmass", default=0)
parser.add_option('--onlybackgroundfit', action="store", type="int", dest="onlybackgroundfit", default=0, help='run only background fit')
parser.add_option('--inflatejobstatistic', action="store", type="int", dest="inflatejobstatistic", default=1, help='enlarge the generated statistics in the fit')
parser.add_option('--scalesignalwidth', action="store", type="int", dest="scalesignalwidth", default=1, help='reduce the signal width by a factor x')
##### final plot options
parser.add_option('--makeSMLimitPlot', action="store", type="int", dest="makeSMLimitPlot", default=0)
parser.add_option('--makeBSMLimitPlotMass', action="store", type="int", dest="makeBSMLimitPlotMass", default=0)
parser.add_option('--makeBSMLimitPlotBRnew', action="store", type="int", dest="makeBSMLimitPlotBRnew", default=0)
parser.add_option('--makeBSMLimitPlot2D', action="store", type="int", dest="makeBSMLimitPlot2D", default=0)
parser.add_option('--blindObservedLine', action="store", type="int", dest="blindObservedLine", default=0)
parser.add_option('--plotPValue', action="store", type="int", dest="plotPValue", default=0)
parser.add_option('--plotxsec', action="store", type="int", dest="plotxsec", default=0)
parser.add_option('--plotSignalStrenght', action="store", type="int", dest="plotSignalStrenght", default=0)
parser.add_option('--plotLikelihoodScan', action="store", type="int", dest="plotLikelihoodScan", default=0)
(options, args) = parser.parse_args()
#############################################
######### Get Some Global Variables #########
#############################################
#mass = [1000,2000,3000,4000]
#mass = [4000]
#mass = [4000]
mass = [600,700,750,800,900,1000]
#mass = [750]
ccmlo = [600,600,600,600,600,600]
#ccmhi = [1500,2500,3500,4500]
ccmhi = [1500,1500,1500,1500,1500,1500]
mjlo = [40,40,40,40,40,40]
mjhi = [150,150,150,150,150,150]
#mjlo = [35,35,35,35]
#mjhi = [110,110,110,110]
mlo = [600,600,600,600,600,600]
#mlo = [1000,1000,1000,1000]
#mhi = [1500,2500,3500,4500]
mhi = [1500,1500,1500,1500,1500,1500]
#shape = ["ExpN","ExpN","ExpN","ExpN","ExpN","ExpN"]
shape = ["Exp","Exp","Exp","Exp","Exp","Exp"]
#shape = ["ExpN","ExpN","ExpN","ExpN"]
shapeAlt = ["ExpTail","ExpTail","ExpTail","ExpTail","ExpTail","ExpTail"]
#shape = ["Exp","Exp","Exp","Exp"]
#shapeAlt = ["Pow","Pow","Pow","Pow"]
points = []
for p in range(1,2):
points+=[float(p/10.)]
points+=[float(p/10.+0.05)]
points+=[float(p/1.)]
points+=[float(p/1.+0.5)]
points+=[float(p*10.)]
points+=[float(p*10.+5.)]
'''
mass = [2000]#,2000,3000,4000]
ccmlo = [700]#,800,800,800]
ccmhi = [2500]#,4800,4800,4800]
mjlo = [35]#,40,40,40]
mjhi = [140]#,130,130,130]
mlo = [700]#,700,700,700]
mhi = [2500]#,5000,5000,5000]
shape = ["ExpN"]#,"Exp","Exp","Exp"]
shapeAlt = ["ExpTail"]#,"Pow","Pow","Pow"]
'''
################## options turnOn Analysis
'''
if options.turnOnAnalysis :
mlo = [ 400, 400, 400, 400, 400] ## min mlvj cut
mhi = [1500,1500,1500,1500,1500] ## max mlvj cut
else:
mlo = [ 550, 550, 550, 550, 550] ## min mlvj cut
mhi = [1500,1500,1500,1500,1500] ## max mlvj cut
'''
################## options for makeCards
'''
if options.makeCards and options.turnOnAnalysis:
shapeAlt = ["ErfExp_v1","ErfExp_v1","ErfExp_v1","ErfExp_v1","ErfExp_v1"] ## basic shape
shape = ["ErfPow2_v1", "ErfPow2_v1","ErfPow2_v1","ErfPow2_v1","ErfPow2_v1"] ## alternate one
elif not options.turnOnAnalysis and options.makeCards:
shape = ["Exp","Exp","Exp","Exp","Exp"] ## basic shape
shapeAlt = ["Pow","Pow","Pow","Pow","Pow"] ## alternate one
'''
################## options for bias Study
if options.biasStudy:
if not options.turnOnAnalysis and not options.fitjetmass:
# shape_gen = ["Exp","Exp","Exp","Exp","Exp"]
shape_fit = ["Exp","Exp","Exp","Exp","Exp"]
shape_gen = ["Pow2","Pow2","Pow2","Pow2","Pow2"]
# shape_fit = ["Pow2","Pow2","Pow2","Pow2","Pow2"]
# shape_gen = ["Pow","Pow","Pow","Pow","Pow"]
# shape_fit = ["Pow","Pow","Pow","Pow","Pow"]
elif options.turnOnAnalysis and not options.fitjetmass:
shape_gen = ["ErfExp_v1","ErfExp_v1","ErfExp_v1","ErfExp_v1","ErfExp_v1"];
shape_fit = ["ErfExp_v1","ErfExp_v1","ErfExp_v1","ErfExp_v1","ErfExp_v1"];
# shape_gen = ["ErfPowExp_v1","ErfPowExp_v1","ErfPowExp_v1","ErfPowExp_v1","ErfPowExp_v1"];
# shape_fit = ["ErfPowExp_v1","ErfPowExp_v1","ErfPowExp_v1","ErfPowExp_v1","ErfPowExp_v1"];
# shape_gen = ["ErfPow_v1","ErfPow_v1","ErfPow_v1","ErfPow_v1","ErfPow_v1"];
# shape_fit = ["ErfPow_v1","ErfPow_v1","ErfPow_v1","ErfPow_v1","ErfPow_v1"];
elif options.fitjetmass:
# shape_gen = ["ErfExp","ErfExp","ErfExp","ErfExp","ErfExp"];
# shape_fit = ["ErfExp","ErfExp","ErfExp","ErfExp","ErfExp"];
# shape_gen = ["User1","User1","User1","User1","User1"];
shape_fit = ["User1","User1","User1","User1","User1"];
shape_gen = ["ErfPow","ErfPow","ErfPow","ErfPow","ErfPow"];
# shape_fit = ["ErfPow","ErfPow","ErfPow","ErfPow","ErfPow"];
isMC = [0,0,0,0,0];
#cprime = [01,02,03,05,07,10]
#BRnew = [00,01,02,03,04,05]
cprime = [10]
BRnew = [00]
####CMS lumi
cmsText = "CMS";
cmsTextFont = 61
writeExtraText = True
extraText = "Preliminary"
extraTextFont = 52
lumiTextSize = 0.6
lumiTextOffset = 0.2
cmsTextSize = 0.75
cmsTextOffset = 0.1
relPosX = 0.045
relPosY = 0.035
relExtraDY = 1.2
extraOverCmsTextSize = 0.76
lumi_13TeV = "2.3 fb^{-1}"
lumi_8TeV = "19.7 fb^{-1}"
lumi_7TeV = "5.1 fb^{-1}"
lumi_sqrtS = ""
drawLogo = False
def CMS_lumi(pad, iPeriod, iPosX ):
outOfFrame = False
if(iPosX/10==0 ): outOfFrame = True
alignY_=3
alignX_=2
if( iPosX/10==0 ): alignX_=1
if( iPosX==0 ): alignY_=1
if( iPosX/10==1 ): alignX_=1
if( iPosX/10==2 ): alignX_=2
if( iPosX/10==3 ): alignX_=3
align_ = 10*alignX_ + alignY_
H = pad.GetWh()
W = pad.GetWw()
l = pad.GetLeftMargin()
t = pad.GetTopMargin()
r = pad.GetRightMargin()
b = pad.GetBottomMargin()
e = 0.025
pad.cd()
lumiText = ""
if( iPeriod==1 ):
lumiText += lumi_7TeV
lumiText += " (7 TeV)"
elif ( iPeriod==2 ):
lumiText += lumi_8TeV
lumiText += " (8 TeV)"
elif( iPeriod==3 ):
lumiText = lumi_8TeV
lumiText += " (8 TeV)"
lumiText += " + "
lumiText += lumi_7TeV
lumiText += " (7 TeV)"
elif ( iPeriod==4 ):
lumiText += lumi_13TeV
lumiText += " (13 TeV)"
elif ( iPeriod==7 ):
if( outOfFrame ):lumiText += "#scale[0.85]{"
lumiText += lumi_13TeV
lumiText += " (13 TeV)"
lumiText += " + "
lumiText += lumi_8TeV
lumiText += " (8 TeV)"
lumiText += " + "
lumiText += lumi_7TeV
lumiText += " (7 TeV)"
if( outOfFrame): lumiText += "}"
elif ( iPeriod==12 ):
lumiText += "8 TeV"
elif ( iPeriod==0 ):
lumiText += lumi_sqrtS
print lumiText
latex = rt.TLatex()
latex.SetNDC()
latex.SetTextAngle(0)
latex.SetTextColor(rt.kBlack)
extraTextSize = extraOverCmsTextSize*cmsTextSize
latex.SetTextFont(42)
latex.SetTextAlign(31)
latex.SetTextSize(lumiTextSize*t)
latex.DrawLatex(1-r,1-t+lumiTextOffset*t,lumiText)
if( outOfFrame ):
latex.SetTextFont(cmsTextFont)
latex.SetTextAlign(11)
latex.SetTextSize(cmsTextSize*t)
latex.DrawLatex(l,1-t+lumiTextOffset*t,cmsText)
pad.cd()
posX_ = 0
if( iPosX%10<=1 ):
posX_ = l + relPosX*(1-l-r)
elif( iPosX%10==2 ):
posX_ = l + 0.5*(1-l-r)
elif( iPosX%10==3 ):
posX_ = 1-r - relPosX*(1-l-r)
posY_ = 1-t - relPosY*(1-t-b)
if( not outOfFrame ):
if( drawLogo ):
posX_ = l + 0.045*(1-l-r)*W/H
posY_ = 1-t - 0.045*(1-t-b)
xl_0 = posX_
yl_0 = posY_ - 0.15
xl_1 = posX_ + 0.15*H/W
yl_1 = posY_
CMS_logo = rt.TASImage("CMS-BW-label.png")
pad_logo = rt.TPad("logo","logo", xl_0, yl_0, xl_1, yl_1 )
pad_logo.Draw()
pad_logo.cd()
CMS_logo.Draw("X")
pad_logo.Modified()
pad.cd()
else:
latex.SetTextFont(cmsTextFont)
latex.SetTextSize(cmsTextSize*t)
latex.SetTextAlign(align_)
latex.DrawLatex(posX_, posY_, cmsText)
if( writeExtraText ) :
latex.SetTextFont(extraTextFont)
latex.SetTextAlign(align_)
latex.SetTextSize(extraTextSize*t)
latex.DrawLatex(posX_, posY_- relExtraDY*cmsTextSize*t, extraText)
elif( writeExtraText ):
if( iPosX==0):
posX_ = l + relPosX*(1-l-r)
posY_ = 1-t+lumiTextOffset*t
latex.SetTextFont(extraTextFont)
latex.SetTextSize(extraTextSize*t)
latex.SetTextAlign(align_)
latex.DrawLatex(posX_, posY_, extraText)
pad.Update()
########################################
###### Make Asymptotic Limit Plot ######
########################################
def getAsymLimits(file):
f = ROOT.TFile(file);
t = f.Get("limit");
entries = t.GetEntries();
lims = [0,0,0,0,0,0];
limit_entries = 0;
for i in range(entries):
t.GetEntry(i);
t_quantileExpected = t.quantileExpected;
t_limit = t.limit;
# if t_quantileExpected == 0.5: print "entry: ",i," limit: ", t_limit, ", quantileExpected: ",t_quantileExpected;
if t_quantileExpected == -1.: lims[0] += t_limit;
elif t_quantileExpected >= 0.024 and t_quantileExpected <= 0.026: lims[1] += t_limit;
elif t_quantileExpected >= 0.15 and t_quantileExpected <= 0.17: lims[2] += t_limit;
elif t_quantileExpected == 0.5: lims[3] += t_limit; limit_entries += 1 ;
elif t_quantileExpected >= 0.83 and t_quantileExpected <= 0.85: lims[4] += t_limit;
elif t_quantileExpected >= 0.974 and t_quantileExpected <= 0.976: lims[5] += t_limit;
else: print "Unknown quantile!"
# print lims[0]," / ",limit_entries, " = ",lims[0]/limit_entries;
lims[0] = lims[0]/limit_entries ;
lims[1] = lims[1]/limit_entries ;
lims[2] = lims[2]/limit_entries ;
lims[3] = lims[3]/limit_entries ;
lims[4] = lims[4]/limit_entries ;
lims[5] = lims[5]/limit_entries ;
return lims;
########################################
###### Submit batch job for cards ######
########################################
def submitBatchJob( command, fn ):
currentDir = os.getcwd();
CMSSWDir = currentDir+"/../";
# create a dummy bash/csh
outScript = open(fn+".sh","w");
if not options.lxbatchCern and not options.herculesMilano :
outScript.write('#!/bin/bash');
outScript.write("\n"+'date');
outScript.write("\n"+'source /uscmst1/prod/sw/cms/bashrc prod');
outScript.write("\n"+'echo "condor dir: " ${_CONDOR_SCRATCH_DIR}');
outScript.write("\n"+'cd '+currentDir);
outScript.write("\n"+'eval `scram runtime -sh`');
outScript.write("\n"+'cd -');
outScript.write("\n"+'export PATH=${PATH}:'+currentDir);
outScript.write("\n"+'echo ${PATH}');
outScript.write("\n"+'ls');
outScript.write("\n"+command);
outScript.write("\n"+'tar -cvzf outputFrom_'+fn+'.tar.gz *');
outScript.close();
condorScript = open("condor_"+fn,"w");
condorScript.write('universe = vanilla')
condorScript.write("\n"+"Executable = "+fn+".sh")
condorScript.write("\n"+'Requirements = Memory >= 199 &&OpSys == "LINUX"&& (Arch != "DUMMY" )&& Disk > 1000000')
condorScript.write("\n"+'Should_Transfer_Files = YES')
condorScript.write("\n"+'Transfer_Input_Files = doFit_class_higgs.py, BiasStudy/do_fitBias_higgs.py, AutoDict_std__map_std__string_std__string__cxx.so')
condorScript.write("\n"+'WhenToTransferOutput = ON_EXIT_OR_EVICT')
condorScript.write("\n"+'Output = out_$(Cluster).stdout')
condorScript.write("\n"+'Error = out_$(Cluster).stderr')
condorScript.write("\n"+'Error = out_$(Cluster).stderr')
condorScript.write("\n"+'Log = out_$(Cluster).log')
condorScript.write("\n"+'Notification = Error')
condorScript.write("\n"+'Queue 1')
condorScript.close();
os.system("condor_submit "+"condor_"+fn);
elif options.lxbatchCern and not options.herculesMilano:
outScript.write('#!/bin/bash');
outScript.write("\n"+'cd '+CMSSWDir);
outScript.write("\n"+'eval `scram runtime -sh`');
outScript.write("\n"+'cd -');
outScript.write("\necho $PWD");
outScript.write("\nls");
outScript.write("\ncp "+currentDir+"/"+options.datacardDIR+"/ww* ./")
# outScript.write("\n"+'cd '+currentDir);
# outScript.write("\n"+'eval `scram runtime -sh`');
# outScript.write("\n"+'export PATH=${PATH}:'+currentDir);
# outScript.write("\n"+'echo ${PATH}');
# outScript.write("\n"+'ls');
outScript.write("\n"+command);
outScript.write("\n"+'rm *.out');
outScript.close();
os.system("chmod 777 "+currentDir+"/"+fn+".sh");
if options.queque != "":
os.system("bsub -q "+options.queque+" -cwd "+currentDir+" "+fn+".sh");
else:
os.system("bsub -q cmscaf1nd -cwd "+currentDir+" "+fn+".sh");
elif not options.lxbatchCern and options.herculesMilano:
outScript.write('#!/bin/bash');
outScript.write("\n"+'cd '+currentDir);
outScript.write("\n"+'eval `scram runtime -sh`');
outScript.write("\n"+'cd -');
outScript.write("\n"+'cp '+currentDir+'/BiasStudy/do_fitBias_higgs.py ./');
outScript.write("\n"+'cp '+currentDir+'/doFit_class_higgs.py ./');
outScript.write("\n"+'ls');
outScript.write("\n"+"unbuffer "+command+" > /gwteray/users/brianza/output"+fn+".txt");
outScript.close();
os.system("chmod 777 "+currentDir+"/"+fn+".sh");
if options.queque != "":
os.system("qsub -V -d "+currentDir+" -q "+options.queque+" "+currentDir+"/"+fn+".sh");
else:
os.system("qsub -V -d "+currentDir+" -q longcms "+currentDir+"/"+fn+".sh");
##########################################
###### Submit batch job for combine ######
##########################################
def submitBatchJobCombine( command, fn, mass, cprime, BRnew ):
currentDir = os.getcwd();
CMSSWDir = currentDir+"/../";
if options.sigChannel !="":
SIGCH = options.jetBin+"_"+options.sigChannel;
else:
SIGCH = options.jetBin;
# currentDir = os.getcwd();
# create a dummy bash/csh
outScript = open(fn+".sh","w");
file1 = "wwlvj_BulkGraviton_newxsec%03d_em%s_HP_unbin.txt"%(mass,SIGCH);
file2 = "wwlvj_BulkGraviton_newxsec%03d_mu%s_HP_workspace.root"%(mass,SIGCH);
file3 = "wwlvj_BulkGraviton_newxsec%03d_el%s_HP_workspace.root"%(mass,SIGCH);
if not options.lxbatchCern and not options.herculesMilano :
outScript.write('#!/bin/bash');
outScript.write("\n"+'date');
outScript.write("\n"+'source /uscmst1/prod/sw/cms/bashrc prod');
outScript.write("\n"+'cd '+currentDir);
outScript.write("\n"+'eval `scram runtime -sh`');
outScript.write("\n"+'cd -');
outScript.write("\n"+'ls');
outScript.write("\n"+command);
if options.inputGeneratedDataset != "" and options.generateOnly:
outScript.write("\n "+"mv higgsCombine* "+currentDir+"/"+options.inputGeneratedDataset);
outScript.write("\n "+"rm rootstats* ");
outScript.close();
# link a condor script to your shell script
condorScript = open("subCondor_"+fn,"w");
condorScript.write('universe = vanilla')
condorScript.write("\n"+"Executable = "+fn+".sh")
condorScript.write("\n"+'Requirements = Memory >= 199 &&OpSys == "LINUX"&& (Arch != "DUMMY" )&& Disk > 1000000')
condorScript.write("\n"+'Should_Transfer_Files = YES')
condorScript.write("\n"+'Transfer_Input_Files = '+file1+', '+file2+', '+file3)
condorScript.write("\n"+'WhenToTransferOutput = ON_EXIT_OR_EVICT')
condorScript.write("\n"+'Output = out_$(Cluster).stdout')
condorScript.write("\n"+'Error = out_$(Cluster).stderr')
condorScript.write("\n"+'Error = out_$(Cluster).stderr')
condorScript.write("\n"+'Log = out_$(Cluster).log')
condorScript.write("\n"+'Notification = Error')
condorScript.write("\n"+'Queue 1')
condorScript.close();
# submit the condor job
os.system("condor_submit "+"subCondor_"+fn)
elif options.lxbatchCern and not options.herculesMilano:
outScript.write('#!/bin/bash');
outScript.write("\n"+'cd '+CMSSWDir);
outScript.write("\n"+'eval `scram runtime -sh`');
outScript.write("\n"+'cd -');
outScript.write("\necho $PWD");
outScript.write("\nls");
# outScript.write('#!/bin/bash');
# outScript.write("\n"+'date');
# outScript.write("\n"+'cd '+currentDir);
# outScript.write("\n"+'eval `scram runtime -sh`');
# outScript.write("\n"+'cd -');
# outScript.write("\n"+'ls');
file1 = "wwlvj_BulkGraviton_newxsec%03d_%s%s_HP_unbin.txt"%(mass,options.channel,SIGCH);
file2 = "wwlvj_BulkGraviton_newxsec%03d_mu%s_HP_workspace.root"%(mass,SIGCH);
file3 = "wwlvj_BulkGraviton_newxsec%03d_el%s_HP_workspace.root"%(mass,SIGCH);
file4 = "wwlvj_BulkGraviton_newxsec%03d_em%s_HP_workspace.root"%(mass,SIGCH);
outScript.write("\ncp "+currentDir+"/"+file1+" ./")
outScript.write("\ncp "+currentDir+"/"+file2+" ./")
outScript.write("\ncp "+currentDir+"/"+file3+" ./")
outScript.write("\ncp "+currentDir+"/"+file4+" ./")
outScript.write("\ncp -r "+currentDir+"/"+options.inputGeneratedDataset+" ./")
outScript.write("\ncp "+currentDir+"/"+"list* ./")
# outScript.write("\n"+'cp '+currentDir+'/'+file1+' ./');
# outScript.write("\n"+'cp '+currentDir+'/'+file2+' ./');
# outScript.write("\n"+'cp '+currentDir+'/'+file3+' ./');
# outScript.write("\n"+'cp '+currentDir+'/'+file4+' ./');
outScript.write("\n"+command);
if options.inputGeneratedDataset != "" and options.generateOnly:
# outScript.write("\n "+"cp higgsCombine* "+currentDir+"/"+options.inputGeneratedDataset);
outScript.write("\n "+"cp higgsCombine* "+currentDir+"/"+options.datacardDIR);
outScript.write("\n "+"cp higgsCombine* "+currentDir+"/"+options.inputGeneratedDataset);
outScript.write("\n "+"cp mlfit* "+currentDir+"/"+options.inputGeneratedDataset);
outScript.write("\n "+"rm rootstats* ");
outScript.close();
os.system("chmod 777 "+currentDir+"/"+fn+".sh");
if options.queque!="" :
os.system("bsub -q "+options.queque+" -cwd "+currentDir+" "+fn+".sh");
else:
os.system("bsub -q cmscaf1nd -cwd "+currentDir+" "+fn+".sh");
elif not options.lxbatchCern and options.herculesMilano:
outScript.write('#!/bin/bash');
outScript.write("\n"+'date');
outScript.write("\n"+'cd '+currentDir);
outScript.write("\n"+'eval `scram runtime -sh`');
outScript.write("\n"+'cd -');
outScript.write("\n"+'ls');
file1 = "wwlvj_BulkGraviton_newxsec%03d_%s%s_HP_unbin.txt"%(mass,options.channel,SIGCH);
file2 = "wwlvj_BulkGraviton_newxsec%03d_mu%s_HP_workspace.root"%(mass,SIGCH);
file3 = "wwlvj_BulkGraviton_newxsec%03d_el%s_HP_workspace.root"%(mass,SIGCH);
file4 = "wwlvj_BulkGraviton_newxsec%03d_em%s_HP_workspace.root"%(mass,SIGCH);
outScript.write("\n"+'cp '+currentDir+'/'+file1+' ./');
outScript.write("\n"+'cp '+currentDir+'/'+file2+' ./');
outScript.write("\n"+'cp '+currentDir+'/'+file3+' ./');
outScript.write("\n"+'cp '+currentDir+'/'+file4+' ./');
outScript.write("\n"+command);
if options.inputGeneratedDataset != "" and options.generateOnly:
outScript.write("\n "+"mv higgsCombine* "+currentDir+"/"+options.inputGeneratedDataset);
outScript.write("\n "+"rm rootstats* ");
outScript.close();
os.system("chmod 777 "+currentDir+"/"+fn+".sh");
if options.queque != "":
os.system("qsub -V -d "+currentDir+" -q "+options.queque+" "+currentDir+"/"+fn+".sh");
else:
os.system("qsub -V -d "+currentDir+" -q longcms "+currentDir+"/"+fn+".sh");
#####################################
###### definition of the style ######
#####################################
def setStyle():
gStyle.SetPadBorderMode(0);
gStyle.SetFrameBorderMode(0);
gStyle.SetPadBottomMargin(0.12);
gStyle.SetPadLeftMargin(0.12);
gStyle.SetCanvasColor(ROOT.kWhite);
gStyle.SetCanvasDefH(600); #Height of canvas
gStyle.SetCanvasDefW(600); #Width of canvas
gStyle.SetCanvasDefX(0); #POsition on screen
gStyle.SetCanvasDefY(0);
gStyle.SetPadTopMargin(0.05);
gStyle.SetPadBottomMargin(0.15);#0.13);
gStyle.SetPadLeftMargin(0.15);#0.16);
gStyle.SetPadRightMargin(0.05);#0.02);
# For the Pad:
gStyle.SetPadBorderMode(0);
gStyle.SetPadColor(ROOT.kWhite);
gStyle.SetPadGridX(ROOT.kFALSE);
gStyle.SetPadGridY(ROOT.kFALSE);
gStyle.SetGridColor(0);
gStyle.SetGridStyle(3);
gStyle.SetGridWidth(1);
# For the frame:
gStyle.SetFrameBorderMode(0);
gStyle.SetFrameBorderSize(1);
gStyle.SetFrameFillColor(0);
gStyle.SetFrameFillStyle(0);
gStyle.SetFrameLineColor(1);
gStyle.SetFrameLineStyle(1);
gStyle.SetFrameLineWidth(1);
gStyle.SetAxisColor(1, "XYZ");
gStyle.SetStripDecimals(ROOT.kTRUE);
gStyle.SetTickLength(0.03, "XYZ");
gStyle.SetNdivisions(505, "XYZ");
gStyle.SetPadTickX(1); # To get tick marks on the opposite side of the frame
gStyle.SetPadTickY(1);
gStyle.SetGridColor(0);
gStyle.SetGridStyle(3);
gStyle.SetGridWidth(1);
gStyle.SetTitleColor(1, "XYZ");
gStyle.SetTitleFont(42, "XYZ");
gStyle.SetTitleSize(0.05, "XYZ");
gStyle.SetTitleXOffset(1.15);#0.9);
gStyle.SetTitleYOffset(1.3); # => 1.15 if exponents
gStyle.SetLabelColor(1, "XYZ");
gStyle.SetLabelFont(42, "XYZ");
gStyle.SetLabelOffset(0.007, "XYZ");
gStyle.SetLabelSize(0.045, "XYZ");
gStyle.SetPadBorderMode(0);
gStyle.SetFrameBorderMode(0);
gStyle.SetTitleTextColor(1);
gStyle.SetTitleFillColor(10);
gStyle.SetTitleFontSize(0.05);
gStyle.SetOptStat(0);
gStyle.SetOptTitle(0)
gStyle.SetOptFit(1)
NRGBs = 5
NCont = 255
stops = [ 0.00, 0.34, 0.61, 0.84, 1.00 ]
red = [ 0.00, 0.00, 0.87, 1.00, 0.51 ]
green = [ 0.00, 0.81, 1.00, 0.20, 0.00 ]
blue = [ 0.51, 1.00, 0.12, 0.00, 0.00 ]
stopsArray = array('d', stops)
redArray = array('d', red)
greenArray = array('d', green)
blueArray = array('d', blue)
TColor.CreateGradientColorTable(NRGBs, stopsArray, redArray, greenArray, blueArray, NCont)
gStyle.SetNumberContours(NCont)
####################################################
### Get PValue from combine -M ProfileLikelihood ###
####################################################
def getPValueFromCard(file,observed):
f = ROOT.TFile(file);
t = f.Get("limit");
entries = t.GetEntries();
lims = 0;
for i in range(entries):
t.GetEntry(i);
lims += t.limit ;
return lims/entries;
##############################
#### Make SM Limits Plots ####
##############################
def makeSMLimitPlot(SIGCH,cprime = 10, brnew = 00):
nPoints = len(mass);
xsec = [0.406830851,0.165094354,0.110500282,0.076058293,0.0382161,0.020499693];
xsec_corr = [1.,1.,1.,1.,1.,1.];
xbins = array('f', []); xbins_env = array('f', []);
ybins_exp = array('f', []); ybins_obs = array('f', []);
ybins_1s = array('f', []); ybins_2s = array('f', []);
setStyle();
for i in range(len(mass)):
curFile = "higgsCombinewwlvj_BulkGraviton_newxsec%03d_%s%s_HP_unbin.Asymptotic.mH%03d.root"%(mass[i],options.channel,SIGCH,mass[i]);
print curFile
curAsymLimits = getAsymLimits(curFile);
xbins.append( mass[i] );
xbins_env.append( mass[i] );
ybins_exp.append( curAsymLimits[3] );
ybins_obs.append( curAsymLimits[0] );
ybins_2s.append( curAsymLimits[1] );
ybins_1s.append( curAsymLimits[2] );
for i in range( len(mass)-1, -1, -1 ):
curFile = "higgsCombinewwlvj_BulkGraviton_newxsec%03d_%s%s_HP_unbin.Asymptotic.mH%03d.root"%(mass[i],options.channel,SIGCH,mass[i]);
curAsymLimits = getAsymLimits(curFile);
xbins_env.append( mass[i] );
ybins_2s.append( curAsymLimits[5] );
ybins_1s.append( curAsymLimits[4] );
curGraph_exp = ROOT.TGraphAsymmErrors(nPoints,xbins,ybins_exp);
curGraph_obs = ROOT.TGraphAsymmErrors(nPoints,xbins,ybins_obs);
curGraph_1s = ROOT.TGraphAsymmErrors(nPoints*2,xbins_env,ybins_1s);
curGraph_2s = ROOT.TGraphAsymmErrors(nPoints*2,xbins_env,ybins_2s);
curGraph_obs.SetMarkerStyle(20);
curGraph_obs.SetLineWidth(3);
curGraph_obs.SetLineStyle(1);
curGraph_obs.SetMarkerSize(1.6);
curGraph_exp.SetMarkerSize(1.3);
curGraph_exp.SetMarkerColor(ROOT.kBlack);
curGraph_exp.SetLineStyle(2);
curGraph_exp.SetLineWidth(3);
curGraph_exp.SetMarkerSize(2);
curGraph_exp.SetMarkerStyle(24);
curGraph_exp.SetMarkerColor(ROOT.kBlack);
curGraph_1s.SetFillColor(ROOT.kGreen);
curGraph_1s.SetFillStyle(1001);
curGraph_1s.SetLineStyle(ROOT.kDashed);
curGraph_1s.SetLineWidth(3);
curGraph_2s.SetFillColor(ROOT.kYellow);
curGraph_2s.SetFillStyle(1001);
curGraph_2s.SetLineStyle(ROOT.kDashed);
curGraph_2s.SetLineWidth(3);
oneLine = ROOT.TF1("oneLine","1",599,1001);
oneLine.SetLineColor(ROOT.kRed);
oneLine.SetLineWidth(3);
setStyle();
can_SM = ROOT.TCanvas("can_SM","can_SM",600,650);
hrl_SM = can_SM.DrawFrame(599,0.01,1001,1000);#ROOT.TMath.MaxElement(curGraph_2s.GetN(),curGraph_2s.GetY())*1.2);
hrl_SM.GetYaxis().SetTitle("#mu = #sigma_{95%} / #sigma_{theory}");
hrl_SM.GetYaxis().SetTitleOffset(1.35);
hrl_SM.GetYaxis().SetTitleSize(0.045);
hrl_SM.GetYaxis().SetTitleFont(42);
hrl_SM.GetXaxis().SetTitle("M_{G} (GeV)");
hrl_SM.GetXaxis().SetTitleSize(0.045);
hrl_SM.GetXaxis().SetTitleFont(42);
# hrl_SM.GetYaxis().SetNdivisions(505);
can_SM.SetGridx(1);
can_SM.SetGridy(1);
ROOT.gPad.SetLogy();
curGraph_2s.Draw("F");
curGraph_1s.Draw("Fsame");
# if not options.blindObservedLine : curGraph_obs.Draw("PCsame");
curGraph_obs.Draw("PCsame");
curGraph_exp.Draw("Csame");
oneLine.Draw("same");
leg2 = ROOT.TLegend(0.3,0.72,0.75,0.9);
leg2.SetFillColor(0);
leg2.SetShadowColor(0);
leg2.SetTextFont(42);
leg2.SetTextSize(0.028);
leg2.AddEntry(curGraph_exp,"Asympt. CL_{S} Expected","L")
leg2.AddEntry(curGraph_1s, "Asympt. CL_{S} Expected #pm 1#sigma","LF")
leg2.AddEntry(curGraph_2s, "Asympt. CL_{S} Expected #pm 2#sigma","LF")
# if not options.blindObservedLine: leg2.AddEntry(curGraph_obs,"Asympt. CL_{S} Observed","LP")
leg2.AddEntry(curGraph_obs,"Asympt. CL_{S} Observed","LP")
can_SM.Update();
can_SM.RedrawAxis();
can_SM.RedrawAxis("g");
can_SM.Update();
leg2.Draw();
banner = TPaveText( 0.145, 0.953, 0.56, 0.975, "brNDC");
banner.SetFillColor(ROOT.kWhite);
banner.SetTextSize(0.03);
banner.SetTextAlign(11);
banner.SetTextFont(62);
banner.SetBorderSize(0);
leftText = "CMS Preliminary";
banner.AddText(leftText);
banner.Draw();
label_sqrt = TPaveText(0.5,0.953,0.96,0.975, "brNDC");
label_sqrt.SetFillColor(ROOT.kWhite);
label_sqrt.SetBorderSize(0);
label_sqrt.SetTextSize(0.03);
label_sqrt.SetTextFont(62);
label_sqrt.SetTextAlign(31); # align right
label_sqrt.AddText("W #rightarrow l#nu, L = 2.3 fb^{-1} at #sqrt{s} = 13 TeV");
label_sqrt.Draw();
os.system("mkdir -p %s/limitFigs/"%(os.getcwd()));
can_SM.SaveAs("limitFigs/SMLim_%s_HP.png"%(options.channel));
can_SM.SaveAs("limitFigs/SMLim_%s_HP.pdf"%(options.channel));
#############################
#### Make limit in xsec #####
#############################
def makeSMXsecPlot(SIGCH,cprime = 10, brnew = 00):
nPoints = len(mass);
xsec = [0.406830851,0.165094354,0.110500282,0.076058293,0.0382161,0.020499693];
xsec_corr = [1,1,1,1,1,1 ];
xbins = array('f', []); xbins_env = array('f', []);
ybins_exp = array('f', []); ybins_obs = array('f', []);
ybins_1s = array('f', []); ybins_2s = array('f', []);
ybins_xsec= array('f', []);
setStyle();
for i in range(len(mass)):
curFile = "higgsCombinewwlvj_BulkGraviton_newxsec%03d_%s%s_HP_unbin.Asymptotic.mH%03d.root"%(mass[i],options.channel,SIGCH,mass[i]);
print curFile
curAsymLimits = getAsymLimits(curFile);
xbins.append( mass[i] );
xbins_env.append( mass[i] );
ybins_exp.append( curAsymLimits[3]*xsec[i]*xsec_corr[i] );
print "expected: ",curAsymLimits[3]*xsec[i]*xsec_corr[i];
ybins_obs.append( curAsymLimits[0]*xsec[i]*xsec_corr[i] );
print "observed: ",curAsymLimits[0]*xsec[i]*xsec_corr[i];
ybins_2s.append( curAsymLimits[1]*xsec[i]*xsec_corr[i] );
ybins_1s.append( curAsymLimits[2]*xsec[i]*xsec_corr[i] );
# ybins_xsec.append(25.*xsec[i]/0.43924356);
ybins_xsec.append(xsec[i]);
for i in range( len(mass)-1, -1, -1 ):
curFile = "higgsCombinewwlvj_BulkGraviton_newxsec%03d_%s%s_HP_unbin.Asymptotic.mH%03d.root"%(mass[i],options.channel,SIGCH,mass[i]);
curAsymLimits = getAsymLimits(curFile);
xbins_env.append( mass[i] );
ybins_2s.append( curAsymLimits[5]*xsec[i]*xsec_corr[i] );
ybins_1s.append( curAsymLimits[4]*xsec[i]*xsec_corr[i] );
curGraph_exp = ROOT.TGraphAsymmErrors(nPoints,xbins,ybins_exp);
curGraph_obs = ROOT.TGraphAsymmErrors(nPoints,xbins,ybins_obs);
curGraph_1s = ROOT.TGraphAsymmErrors(nPoints*2,xbins_env,ybins_1s);
curGraph_2s = ROOT.TGraphAsymmErrors(nPoints*2,xbins_env,ybins_2s);
curGraph_xsec= ROOT.TGraphAsymmErrors(nPoints,xbins,ybins_xsec);
curGraph_obs.SetMarkerStyle(20);
curGraph_obs.SetLineWidth(3);
curGraph_obs.SetLineStyle(1);
curGraph_obs.SetMarkerSize(1.6);
curGraph_exp.SetMarkerSize(1.3);
curGraph_exp.SetMarkerColor(ROOT.kBlack);
curGraph_exp.SetLineStyle(2);
curGraph_exp.SetLineWidth(3);
curGraph_exp.SetMarkerSize(2);
curGraph_exp.SetMarkerStyle(24);
curGraph_exp.SetMarkerColor(ROOT.kBlack);
curGraph_1s.SetFillColor(ROOT.kGreen);
curGraph_1s.SetFillStyle(1001);
curGraph_1s.SetLineStyle(ROOT.kDashed);
curGraph_1s.SetLineWidth(3);
curGraph_2s.SetFillColor(ROOT.kYellow);
curGraph_2s.SetFillStyle(1001);
curGraph_2s.SetLineStyle(ROOT.kDashed);
curGraph_2s.SetLineWidth(3);
# curGraph_obs.SetMarkerStyle(20);
curGraph_xsec.SetLineWidth(3);
curGraph_xsec.SetLineStyle(1);
# curGraph_xsec.SetMarkerSize(1.6);
curGraph_xsec.SetLineColor(ROOT.kRed);
oneG = ROOT.TGraph(4);
print "length: ", len(xsec)
for i in range(len(xsec)):
oneG.SetPoint(i, mass[i], xsec[i]);
oneLine = ROOT.TSpline3("oneLine",oneG);
oneLine.SetLineColor(ROOT.kRed);
oneLine.SetLineWidth(3);
setStyle();
can_SM = ROOT.TCanvas("can_SM","can_SM",600,650);
# can_SM.cd();
hrl_SM = can_SM.DrawFrame(599,0.001,1001,100);#ROOT.TMath.MaxElement(curGraph_2s.GetN(),curGraph_2s.GetY())*1.2);
# upperPad = ROOT.TPad("upperPad", "upperPad", .005, .005, .995, .950);
# upperPad.SetLeftMargin(0.18);
# upperPad.Draw();
# upperPad.cd();
hrl_SM.GetYaxis().SetTitle("#sigma_{95%} x BR(G_{Bulk} #rightarrow WW)(pb)");
hrl_SM.GetYaxis().SetTitleOffset(1.35);
hrl_SM.GetYaxis().SetTitleSize(0.045);
hrl_SM.GetYaxis().SetTitleFont(42);
hrl_SM.GetXaxis().SetTitle("M_{G} (GeV)");
hrl_SM.GetXaxis().SetTitleSize(0.045);
hrl_SM.GetXaxis().SetTitleFont(42);
# hrl_SM.GetYaxis().SetNdivisions(505);
can_SM.SetGridx(1);
can_SM.SetGridy(1);
ROOT.gPad.SetLogy();
curGraph_2s.Draw("F");
curGraph_1s.Draw("Fsame");
if not options.blindObservedLine : curGraph_obs.Draw("PCsame");
curGraph_exp.Draw("Csame");
curGraph_xsec.Draw("Csame");
# oneLine.Draw("same");
# leg2 = ROOT.TLegend(0.3,0.72,0.75,0.9);
leg2 = ROOT.TLegend(0.4,0.72,0.9,0.9);
leg2.SetFillColor(0);
leg2.SetShadowColor(0);
leg2.SetTextFont(42);
leg2.SetTextSize(0.028);
leg2.AddEntry(curGraph_exp,"Asympt. CL_{S} Expected","L")
# leg2.AddEntry(curGraph_1s, "Asympt. CL_{S} Expected #pm 1#sigma","LF")
# leg2.AddEntry(curGraph_2s, "Asympt. CL_{S} Expected #pm 2#sigma","LF")
leg2.AddEntry(curGraph_1s, "Asympt. CL_{S} Expected #pm 1 s.d.","LF")
leg2.AddEntry(curGraph_2s, "Asympt. CL_{S} Expected #pm 2 s.d.","LF")
leg2.AddEntry(curGraph_xsec, "#sigma_{TH} #times BR_{G_{Bulk}#rightarrow WW}, k = 0.5","L")
if not options.blindObservedLine: leg2.AddEntry(curGraph_obs,"Asympt. CL_{S} Observed","LP")
CMS_lumi(can_SM,4,11);
can_SM.Update();
can_SM.RedrawAxis();
can_SM.RedrawAxis("g");
can_SM.Update();
leg2.Draw();
banner = TPaveText( 0.145, 0.953, 0.56, 0.975, "brNDC");