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I think it would also be a good idea to support DER encoding as well. cryptography.x509.load_der_x509_csr() is the DER counterpart to the method in my initial comment. It shouldn't be too hard to detect which was sent once it's received.
Create an API call that can accept PEM encoded CSR and Public Key and generate a certificate based on that.
We'll need to use cryptography.x509.load_pem_x509_csr() to convert the PEM encoded CSR to a csr object that ownca can recognize.
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