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Wombat Workshop

Bayesian Inference and regression using R and Stan

Welcome to the Bayesian Inference and regression workshop using R and Stan!

For efficiency in the workshop, please install or attempt to install the following in a recent version of R (4.2 or higher) before the workshop. I recommend doing this in the following order.

  • The tidyverse (used for general data manipulation)

  • cmdstanR (used to run Stan models)

  • CmdStan through this package. There is a good instruction page in the installation vignette. Sometimes setting file paths can be tricky on managed computers. Please let me know if you have issues

  • Other useful packages in the Stan family include posterior, bayesplot and shinystan

  • You will also need access to lmeresampler for a dataset in part 3.

This workshop will assume that you are familiar with linear regression (including formula notation) and are comfortable working in R using the tidyverse.