The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
v1.0.0 - Magnificent Mainsail - [2024-06-11]
Although its location and design may vary greatly, the mainsail is always a key source of propulsion for a ship.
This is the initial release of nf-core/reportho, created with the nf-core template.
The following people have made significant contributions to the release through design, development and review:
We also thank everyone else from the nf-core community who has participated in planning and development.
The pipeline was created. In particular, it has the following features:
- fetching of ortholog predictions from public databases, through APIs and from local snapshots
- systematic comparison of the predictions and calculation of comparison statistics
- creation of an ortholog list with user-defined criteria
- basic downstream analysis of the obtained ortholog list
- generation of a human-readable report
The pipeline has the following notable dependencies:
| Program | Version |
|---|---|
| Python | 3.11.0 |
| Python Requests | 2.31.0 |
| Biopython | 1.83 |
| R | 4.3.3 |
| PyYAML | 5.4.1 |
| T-COFFEE | 13.46.0 |
| pigz | 2.8 |
| csvtk | 0.26.0 |
| Node | 21.6.2 |
| Yarn | 1.22.19 |
| React | 18.3.1 |
At release date, the following database versions were current and used for testing the pipeline:
| Database | Version |
|---|---|
| OMA | Jul2023 |
| PANTHER | 18 |
| OrthoInspector | Eukaryota2023 |
| EggNOG | 5.0 |