build #303
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| name: build | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| repository_dispatch: | |
| types: [build] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_EVENT_NAME: ${{ github.event_name }} | |
| NXF_ANSI_LOG: false | |
| strategy: | |
| fail-fast: false | |
| timeout-minutes: 30 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/checkout@v4 | |
| with: | |
| repository: laminlabs/lndocs | |
| ssh-key: ${{ secrets.READ_LNDOCS }} | |
| path: lndocs | |
| ref: main | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - uses: nf-core/setup-nextflow@v2 | |
| with: | |
| version: "latest-stable" | |
| - uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit-${{ runner.os }}-${{ hashFiles('.pre-commit-config.yaml') }} | |
| - run: sudo apt-get -y install graphviz | |
| - run: pip install "laminci@git+https://github.com/laminlabs/laminci" | |
| - uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: eu-central-1 | |
| - run: nox -s lint | |
| - run: nox -s build | |
| - uses: codecov/codecov-action@v2 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - uses: nwtgck/[email protected] | |
| with: | |
| publish-dir: "_build/html" | |
| production-deploy: ${{ github.event_name == 'push' }} | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| enable-commit-comment: false | |
| env: | |
| NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }} | |
| NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }} | |
| - uses: voxmedia/github-action-slack-notify-build@v1 | |
| if: success() | |
| env: | |
| SLACK_BOT_TOKEN: ${{ secrets.SLACK_GITHUB_ACTION }} | |
| with: | |
| channel_id: C05FDBBFJ1F | |
| status: SUCCESS | |
| color: good | |
| - uses: voxmedia/github-action-slack-notify-build@v1 | |
| if: failure() | |
| env: | |
| SLACK_BOT_TOKEN: ${{ secrets.SLACK_GITHUB_ACTION }} | |
| with: | |
| channel_id: C05FDBBFJ1F | |
| status: FAILURE | |
| color: danger |