From 1e29d7ea47fafa3ed9e9ae48f25e0e1e53d81b56 Mon Sep 17 00:00:00 2001 From: Katherine Eaton Date: Mon, 24 Oct 2022 17:08:50 -0500 Subject: [PATCH] env: upgrade nextclade and nextclade dataset for #176 --- defaults/parameters.yaml | 4 ++-- workflow/envs/environment.yaml | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/defaults/parameters.yaml b/defaults/parameters.yaml index 2f6d72b..650ccc0 100644 --- a/defaults/parameters.yaml +++ b/defaults/parameters.yaml @@ -18,8 +18,8 @@ rule_params: - name: nextclade_dataset dataset: sars-cov-2 dataset_no-recomb: sars-cov-2-no-recomb - tag: "2022-09-27T12:00:00Z" - tag_no-recomb: "2022-09-27T12:00:00Z" + tag: "2022-10-19T12:00:00Z" + tag_no-recomb: "2022-10-19T12:00:00Z" # --------------------------------------------------------------------------- # exclude_clades : (optional) Exclude strains that are recombinants of these clades diff --git a/workflow/envs/environment.yaml b/workflow/envs/environment.yaml index e74aeaa..ebe662b 100644 --- a/workflow/envs/environment.yaml +++ b/workflow/envs/environment.yaml @@ -17,7 +17,7 @@ dependencies: - bioconda::csvtk=0.24.0 - bioconda::seqkit=2.2.0 # Alignmnent and Clade QC - - bioconda::nextclade=2.5.0 + - bioconda::nextclade=2.7.0 # Phylogeny - conda-forge::biopython=1.79 # Visualization