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Installation of B2SAFE 2

This document describes how to install B2SAFE 2 with iRODS4.1 on a Ubunutu 14.04 system.

Environment

Ubuntu 14.04 server, iRODS 4.1 with postgresql 9.3 You will also need a handle prefix and the respective credentials to configure B2SAFE.

##Prerequisites Also consult https://github.com/EUDAT-B2SAFE/B2SAFE-core/blob/master/install.txt or https://github.com/chStaiger/B2SAFE-core.git

Install git:

sudo apt-get install git

1. Clone code and create packages

  • Clone the github repository of B2SAFE and create the debian package
git clone https://github.com/EUDAT-B2SAFE/B2SAFE-core
git clone https://github.com/chStaiger/B2SAFE-core.git
cd ~/B2SAFE-core/packaging
./create_deb_package.sh
  • Install the created package as root
dpkg -i /home/alice/debbuild/irods-eudat-b2safe_3.1-0.deb

2. Configure B2SAFE

The package b2safe has been installed in /opt/eudat/b2safe.
To install/configure it in iRODS do following as the user who runs iRODS :

# update install.conf with correct parameters with your favorite editor
sudo vi /opt/eudat/b2safe/packaging/install.conf

# install/configure it as the user who runs iRODS
source /etc/irods/service_account.config
sudo su - $IRODS_SERVICE_ACCOUNT_NAME -s "/bin/bash" -c "cd /opt/eudat/b2safe/packaging/ ; ./install.sh"

3. Python dependencies

  • Check dependencies
cd /opt/eudat/b2safe/cmd
./authZmanager.py -h
./epicclient.py --help
./logmanager.py -h
./messageManager.py -h
./metadataManager.py -h
  • Known dependencies
sudo apt-get install python-pip
sudo pip install queuelib
sudo pip install dweepy

sudo apt-get install python-lxml
sudo apt-get install python-defusedxml
sudo apt-get install python-httplib2

sudo apt-get install python-simplejson

4. Tests

  • B2SAFE installation
cd ~/B2SAFE-core/rules
irule -vF eudatGetV.r

should return

*version = 3.1-0
  • Generating PIDs
  • Create a test collection
mkdir testData
#save som,e file with content in testData
vim testData/testfile.txt
# ingest collection into iRODS
iput -r testData/
ils
  • Edit B2SAFE-core/rules/eudatPidsColl.r, adjust coll_path with /<irodszone>/home/<user>/testData
irule -vF B2SAFE-core/rules/eudatPidsColl.r
  • Output should look like this
*newPID = <prefix>/<somecrypticstring>