diff --git a/.github/workflows/python-testing.yml b/.github/workflows/python-testing.yml
index 3ae96c8e..7a51a32e 100644
--- a/.github/workflows/python-testing.yml
+++ b/.github/workflows/python-testing.yml
@@ -35,7 +35,7 @@ jobs:
     needs: ["quality"]
     strategy:
       matrix:
-        python-version: ["3.7", "3.8", "3.9"]
+        python-version: ["3.8", "3.9"]
 
     steps:
       - name: Install non-python dependencies
diff --git a/hippunfold/workflow/rules/common.smk b/hippunfold/workflow/rules/common.smk
index 6dc2fc60..00d174ff 100644
--- a/hippunfold/workflow/rules/common.smk
+++ b/hippunfold/workflow/rules/common.smk
@@ -1,3 +1,5 @@
+from appdirs import AppDirs
+
 # take mean of all scans if >1, otherwise just copy the one scan
 def get_avg_or_cp_scans_cmd(wildcards, input, output):
     if len(input) > 1:
diff --git a/hippunfold/workflow/rules/nnunet.smk b/hippunfold/workflow/rules/nnunet.smk
index b9f20b69..a86a6623 100644
--- a/hippunfold/workflow/rules/nnunet.smk
+++ b/hippunfold/workflow/rules/nnunet.smk
@@ -1,5 +1,4 @@
 import re
-from appdirs import AppDirs
 
 
 def get_nnunet_input(wildcards):
diff --git a/poetry.lock b/poetry.lock
index c6075fa0..b9c00715 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,10 +1,9 @@
-# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
 
 [[package]]
 name = "appdirs"
 version = "1.4.4"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -14,25 +13,27 @@ files = [
 
 [[package]]
 name = "arrow"
-version = "1.2.3"
+version = "1.3.0"
 description = "Better dates & times for Python"
-category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "arrow-1.2.3-py3-none-any.whl", hash = "sha256:5a49ab92e3b7b71d96cd6bfcc4df14efefc9dfa96ea19045815914a6ab6b1fe2"},
-    {file = "arrow-1.2.3.tar.gz", hash = "sha256:3934b30ca1b9f292376d9db15b19446088d12ec58629bc3f0da28fd55fb633a1"},
+    {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
+    {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
 ]
 
 [package.dependencies]
 python-dateutil = ">=2.7.0"
-typing-extensions = {version = "*", markers = "python_version < \"3.8\""}
+types-python-dateutil = ">=2.8.10"
+
+[package.extras]
+doc = ["doc8", "sphinx (>=7.0.0)", "sphinx-autobuild", "sphinx-autodoc-typehints", "sphinx_rtd_theme (>=1.3.0)"]
+test = ["dateparser (==1.*)", "pre-commit", "pytest", "pytest-cov", "pytest-mock", "pytz (==2021.1)", "simplejson (==3.*)"]
 
 [[package]]
 name = "astor"
 version = "0.8.1"
 description = "Read/rewrite/write Python ASTs"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
 files = [
@@ -42,28 +43,24 @@ files = [
 
 [[package]]
 name = "astroid"
-version = "2.11.7"
+version = "2.15.8"
 description = "An abstract syntax tree for Python with inference support."
-category = "dev"
 optional = false
-python-versions = ">=3.6.2"
+python-versions = ">=3.7.2"
 files = [
-    {file = "astroid-2.11.7-py3-none-any.whl", hash = "sha256:86b0a340a512c65abf4368b80252754cda17c02cdbbd3f587dddf98112233e7b"},
-    {file = "astroid-2.11.7.tar.gz", hash = "sha256:bb24615c77f4837c707669d16907331374ae8a964650a66999da3f5ca68dc946"},
+    {file = "astroid-2.15.8-py3-none-any.whl", hash = "sha256:1aa149fc5c6589e3d0ece885b4491acd80af4f087baafa3fb5203b113e68cd3c"},
+    {file = "astroid-2.15.8.tar.gz", hash = "sha256:6c107453dffee9055899705de3c9ead36e74119cee151e5a9aaf7f0b0e020a6a"},
 ]
 
 [package.dependencies]
 lazy-object-proxy = ">=1.4.0"
-setuptools = ">=20.0"
-typed-ast = {version = ">=1.4.0,<2.0", markers = "implementation_name == \"cpython\" and python_version < \"3.8\""}
-typing-extensions = {version = ">=3.10", markers = "python_version < \"3.10\""}
-wrapt = ">=1.11,<2"
+typing-extensions = {version = ">=4.0.0", markers = "python_version < \"3.11\""}
+wrapt = {version = ">=1.11,<2", markers = "python_version < \"3.11\""}
 
 [[package]]
 name = "atomicwrites"
 version = "1.4.1"
 description = "Atomic file writes."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -72,43 +69,38 @@ files = [
 
 [[package]]
 name = "attrs"
-version = "23.1.0"
+version = "23.2.0"
 description = "Classes Without Boilerplate"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "attrs-23.1.0-py3-none-any.whl", hash = "sha256:1f28b4522cdc2fb4256ac1a020c78acf9cba2c6b461ccd2c126f3aa8e8335d04"},
-    {file = "attrs-23.1.0.tar.gz", hash = "sha256:6279836d581513a26f1bf235f9acd333bc9115683f14f7e8fae46c98fc50e015"},
+    {file = "attrs-23.2.0-py3-none-any.whl", hash = "sha256:99b87a485a5820b23b879f04c2305b44b951b502fd64be915879d77a7e8fc6f1"},
+    {file = "attrs-23.2.0.tar.gz", hash = "sha256:935dc3b529c262f6cf76e50877d35a4bd3c1de194fd41f47a2b7ae8f19971f30"},
 ]
 
-[package.dependencies]
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
-
 [package.extras]
 cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
-dev = ["attrs[docs,tests]", "pre-commit"]
+dev = ["attrs[tests]", "pre-commit"]
 docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
 tests = ["attrs[tests-no-zope]", "zope-interface"]
-tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
+tests-mypy = ["mypy (>=1.6)", "pytest-mypy-plugins"]
+tests-no-zope = ["attrs[tests-mypy]", "cloudpickle", "hypothesis", "pympler", "pytest (>=4.3.0)", "pytest-xdist[psutil]"]
 
 [[package]]
 name = "bids-validator"
-version = "1.13.1"
+version = "1.14.6"
 description = "Validator for the Brain Imaging Data Structure"
-category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.8"
 files = [
-    {file = "bids-validator-1.13.1.tar.gz", hash = "sha256:7205ce4e68fba172215332c786f1ac1665025b702b6dff2b1e158f00a2df9890"},
-    {file = "bids_validator-1.13.1-py2.py3-none-any.whl", hash = "sha256:da6edf5e76ef86c8a63b3fcee1dbfb039a16a9ef63cb0d2d05312c200d4607f7"},
+    {file = "bids_validator-1.14.6-py3-none-any.whl", hash = "sha256:e7194193d97bedc6fb173b8606f6d3ed5a467c141f01bca11cd0f38ad1717941"},
+    {file = "bids_validator-1.14.6.tar.gz", hash = "sha256:df2b6b5d1aaad61d34ccad0494f2ed73ce3082825ada31954c4e14c2538d485c"},
 ]
 
 [[package]]
 name = "binaryornot"
 version = "0.4.4"
 description = "Ultra-lightweight pure Python package to check if a file is binary or text."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -123,7 +115,6 @@ chardet = ">=3.0.2"
 name = "black"
 version = "22.12.0"
 description = "The uncompromising code formatter."
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -147,7 +138,6 @@ mypy-extensions = ">=0.4.3"
 pathspec = ">=0.9.0"
 platformdirs = ">=2"
 tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""}
-typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\" and implementation_name == \"cpython\""}
 typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
@@ -158,32 +148,27 @@ uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "boutiques"
-version = "0.5.25"
+version = "0.5.26"
 description = "Schema for describing bash command-line tools"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "boutiques-0.5.25-py2.py3-none-any.whl", hash = "sha256:1a29e5b0e786f1904ebb8d767fbe6189a59865dff120ffe76d141bbea1043b04"},
+    {file = "boutiques-0.5.26-py2.py3-none-any.whl", hash = "sha256:76f15b6a9449cba5c8164d64c1641bfb7ab0f1a7010501110d109c7c09fee8cb"},
 ]
 
 [package.dependencies]
-docopt = "*"
 jsonschema = "*"
-mock = "*"
-nexus-sdk = "*"
-pytest = "*"
-pyyaml = "*"
-requests = "*"
 simplejson = "*"
 tabulate = "*"
 termcolor = "*"
 
+[package.extras]
+all = ["coverage", "docopt", "mock", "nexus-sdk", "oyaml", "pytest", "pytest-runner", "requests", "toml"]
+
 [[package]]
 name = "cached-property"
 version = "1.5.2"
 description = "A decorator for caching properties in classes."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -193,21 +178,19 @@ files = [
 
 [[package]]
 name = "certifi"
-version = "2023.7.22"
+version = "2024.7.4"
 description = "Python package for providing Mozilla's CA Bundle."
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2023.7.22-py3-none-any.whl", hash = "sha256:92d6037539857d8206b8f6ae472e8b77db8058fec5937a1ef3f54304089edbb9"},
-    {file = "certifi-2023.7.22.tar.gz", hash = "sha256:539cc1d13202e33ca466e88b2807e29f4c13049d6d87031a3c110744495cb082"},
+    {file = "certifi-2024.7.4-py3-none-any.whl", hash = "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"},
+    {file = "certifi-2024.7.4.tar.gz", hash = "sha256:5a1e7645bc0ec61a09e26c36f6106dd4cf40c6db3a1fb6352b0244e7fb057c7b"},
 ]
 
 [[package]]
 name = "chardet"
 version = "5.2.0"
 description = "Universal encoding detector for Python 3"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -217,94 +200,107 @@ files = [
 
 [[package]]
 name = "charset-normalizer"
-version = "3.2.0"
+version = "3.3.2"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
-category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
-    {file = "charset-normalizer-3.2.0.tar.gz", hash = "sha256:3bb3d25a8e6c0aedd251753a79ae98a093c7e7b471faa3aa9a93a81431987ace"},
-    {file = "charset_normalizer-3.2.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:0b87549028f680ca955556e3bd57013ab47474c3124dc069faa0b6545b6c9710"},
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+    {file = "charset_normalizer-3.3.2-cp39-cp39-win_amd64.whl", hash = "sha256:b01b88d45a6fcb69667cd6d2f7a9aeb4bf53760d7fc536bf679ec94fe9f3ff3d"},
+    {file = "charset_normalizer-3.3.2-py3-none-any.whl", hash = "sha256:3e4d1f6587322d2788836a99c69062fbb091331ec940e02d12d179c1d53e25fc"},
 ]
 
 [[package]]
 name = "click"
 version = "8.1.7"
 description = "Composable command line interface toolkit"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -314,13 +310,11 @@ files = [
 
 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
 
 [[package]]
 name = "colorama"
 version = "0.4.6"
 description = "Cross-platform colored terminal text."
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
 files = [
@@ -332,7 +326,6 @@ files = [
 name = "configargparse"
 version = "1.7"
 description = "A drop-in replacement for argparse that allows options to also be set via config files and/or environment variables."
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -348,7 +341,6 @@ yaml = ["PyYAML"]
 name = "connection-pool"
 version = "0.0.3"
 description = "thread safe connection pool"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -357,14 +349,13 @@ files = [
 
 [[package]]
 name = "cookiecutter"
-version = "2.3.0"
+version = "2.6.0"
 description = "A command-line utility that creates projects from project templates, e.g. creating a Python package project from a Python package project template."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "cookiecutter-2.3.0-py3-none-any.whl", hash = "sha256:7e87944757c6e9f8729cf89a4139b6a35ab4d6dcbc6ae3e7d6360d44ad3ad383"},
-    {file = "cookiecutter-2.3.0.tar.gz", hash = "sha256:942a794981747f6d7f439d6e49d39dc91a9a641283614160c93c474c72c29621"},
+    {file = "cookiecutter-2.6.0-py3-none-any.whl", hash = "sha256:a54a8e37995e4ed963b3e82831072d1ad4b005af736bb17b99c2cbd9d41b6e2d"},
+    {file = "cookiecutter-2.6.0.tar.gz", hash = "sha256:db21f8169ea4f4fdc2408d48ca44859349de2647fbe494a9d6c3edfc0542c21c"},
 ]
 
 [package.dependencies]
@@ -381,7 +372,6 @@ rich = "*"
 name = "datrie"
 version = "0.8.2"
 description = "Super-fast, efficiently stored Trie for Python."
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -414,24 +404,23 @@ files = [
 
 [[package]]
 name = "dill"
-version = "0.3.7"
+version = "0.3.8"
 description = "serialize all of Python"
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "dill-0.3.7-py3-none-any.whl", hash = "sha256:76b122c08ef4ce2eedcd4d1abd8e641114bfc6c2867f49f3c41facf65bf19f5e"},
-    {file = "dill-0.3.7.tar.gz", hash = "sha256:cc1c8b182eb3013e24bd475ff2e9295af86c1a38eb1aff128dac8962a9ce3c03"},
+    {file = "dill-0.3.8-py3-none-any.whl", hash = "sha256:c36ca9ffb54365bdd2f8eb3eff7d2a21237f8452b57ace88b1ac615b7e815bd7"},
+    {file = "dill-0.3.8.tar.gz", hash = "sha256:3ebe3c479ad625c4553aca177444d89b486b1d84982eeacded644afc0cf797ca"},
 ]
 
 [package.extras]
 graph = ["objgraph (>=1.7.2)"]
+profile = ["gprof2dot (>=2022.7.29)"]
 
 [[package]]
 name = "docopt"
 version = "0.6.2"
 description = "Pythonic argument parser, that will make you smile"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -442,36 +431,30 @@ files = [
 name = "docutils"
 version = "0.20.1"
 description = "Docutils -- Python Documentation Utilities"
-category = "main"
 optional = false
-python-versions = ">=3.7"
-files = [
-    {file = "docutils-0.20.1-py3-none-any.whl", hash = "sha256:96f387a2c5562db4476f09f13bbab2192e764cac08ebbf3a34a95d9b1e4a59d6"},
-    {file = "docutils-0.20.1.tar.gz", hash = "sha256:f08a4e276c3a1583a86dce3e34aba3fe04d02bba2dd51ed16106244e8a923e3b"},
-]
+python-versions = "*"
+files = []
 
 [[package]]
 name = "dpath"
-version = "2.1.6"
+version = "2.2.0"
 description = "Filesystem-like pathing and searching for dictionaries"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "dpath-2.1.6-py3-none-any.whl", hash = "sha256:31407395b177ab63ef72e2f6ae268c15e938f2990a8ecf6510f5686c02b6db73"},
-    {file = "dpath-2.1.6.tar.gz", hash = "sha256:f1e07c72e8605c6a9e80b64bc8f42714de08a789c7de417e49c3f87a19692e47"},
+    {file = "dpath-2.2.0-py3-none-any.whl", hash = "sha256:b330a375ded0a0d2ed404440f6c6a715deae5313af40bbb01c8a41d891900576"},
+    {file = "dpath-2.2.0.tar.gz", hash = "sha256:34f7e630dc55ea3f219e555726f5da4b4b25f2200319c8e6902c394258dd6a3e"},
 ]
 
 [[package]]
 name = "fastjsonschema"
-version = "2.18.0"
+version = "2.20.0"
 description = "Fastest Python implementation of JSON schema"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
-    {file = "fastjsonschema-2.18.0-py3-none-any.whl", hash = "sha256:128039912a11a807068a7c87d0da36660afbfd7202780db26c4aa7153cfdc799"},
-    {file = "fastjsonschema-2.18.0.tar.gz", hash = "sha256:e820349dd16f806e4bd1467a138dced9def4bc7d6213a34295272a6cac95b5bd"},
+    {file = "fastjsonschema-2.20.0-py3-none-any.whl", hash = "sha256:5875f0b0fa7a0043a91e93a9b8f793bcbbba9691e7fd83dca95c28ba26d21f0a"},
+    {file = "fastjsonschema-2.20.0.tar.gz", hash = "sha256:3d48fc5300ee96f5d116f10fe6f28d938e6008f59a6a025c2649475b87f76a23"},
 ]
 
 [package.extras]
@@ -481,7 +464,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc
 name = "flake8"
 version = "4.0.1"
 description = "the modular source code checker: pep8 pyflakes and co"
-category = "dev"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -490,40 +472,14 @@ files = [
 ]
 
 [package.dependencies]
-importlib-metadata = {version = "<4.3", markers = "python_version < \"3.8\""}
 mccabe = ">=0.6.0,<0.7.0"
 pycodestyle = ">=2.8.0,<2.9.0"
 pyflakes = ">=2.4.0,<2.5.0"
 
-[[package]]
-name = "formulaic"
-version = "0.3.4"
-description = "An implementation of Wilkinson formulas."
-category = "main"
-optional = false
-python-versions = ">=3.7.1,<4.0.0"
-files = [
-    {file = "formulaic-0.3.4-py3-none-any.whl", hash = "sha256:5ee1f3f4a5990c0947a68f90d051a4ca497d6eb0f9f387d2cf1e732a9cbf76ec"},
-    {file = "formulaic-0.3.4.tar.gz", hash = "sha256:2f841297d27dbd19f51dadea35887c363512d6eed70503b453e0f59c679d0f54"},
-]
-
-[package.dependencies]
-astor = ">=0.8"
-interface-meta = ">=1.2.0,<2.0.0"
-numpy = ">=1.3"
-pandas = ">=1.2"
-scipy = ">=1.6"
-wrapt = ">=1.0"
-
-[package.extras]
-arrow = ["pyarrow (>=1)"]
-calculus = ["sympy (>=1.3,<1.10)"]
-
 [[package]]
 name = "formulaic"
 version = "0.5.2"
 description = "An implementation of Wilkinson formulas."
-category = "main"
 optional = false
 python-versions = ">=3.7.2"
 files = [
@@ -547,14 +503,13 @@ calculus = ["sympy (>=1.3,<1.10)"]
 
 [[package]]
 name = "gitdb"
-version = "4.0.10"
+version = "4.0.11"
 description = "Git Object Database"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "gitdb-4.0.10-py3-none-any.whl", hash = "sha256:c286cf298426064079ed96a9e4a9d39e7f3e9bf15ba60701e95f5492f28415c7"},
-    {file = "gitdb-4.0.10.tar.gz", hash = "sha256:6eb990b69df4e15bad899ea868dc46572c3f75339735663b81de79b06f17eb9a"},
+    {file = "gitdb-4.0.11-py3-none-any.whl", hash = "sha256:81a3407ddd2ee8df444cbacea00e2d038e40150acfa3001696fe0dcf1d3adfa4"},
+    {file = "gitdb-4.0.11.tar.gz", hash = "sha256:bf5421126136d6d0af55bc1e7c1af1c397a34f5b7bd79e776cd3e89785c2b04b"},
 ]
 
 [package.dependencies]
@@ -562,118 +517,108 @@ smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
-version = "3.1.36"
+version = "3.1.43"
 description = "GitPython is a Python library used to interact with Git repositories"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "GitPython-3.1.36-py3-none-any.whl", hash = "sha256:8d22b5cfefd17c79914226982bb7851d6ade47545b1735a9d010a2a4c26d8388"},
-    {file = "GitPython-3.1.36.tar.gz", hash = "sha256:4bb0c2a6995e85064140d31a33289aa5dce80133a23d36fcd372d716c54d3ebf"},
+    {file = "GitPython-3.1.43-py3-none-any.whl", hash = "sha256:eec7ec56b92aad751f9912a73404bc02ba212a23adb2c7098ee668417051a1ff"},
+    {file = "GitPython-3.1.43.tar.gz", hash = "sha256:35f314a9f878467f5453cc1fee295c3e18e52f1b99f10f6cf5b1682e968a9e7c"},
 ]
 
 [package.dependencies]
 gitdb = ">=4.0.1,<5"
-typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.8\""}
 
 [package.extras]
-test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-sugar", "virtualenv"]
+doc = ["sphinx (==4.3.2)", "sphinx-autodoc-typehints", "sphinx-rtd-theme", "sphinxcontrib-applehelp (>=1.0.2,<=1.0.4)", "sphinxcontrib-devhelp (==1.0.2)", "sphinxcontrib-htmlhelp (>=2.0.0,<=2.0.1)", "sphinxcontrib-qthelp (==1.0.3)", "sphinxcontrib-serializinghtml (==1.1.5)"]
+test = ["coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mock", "mypy", "pre-commit", "pytest (>=7.3.1)", "pytest-cov", "pytest-instafail", "pytest-mock", "pytest-sugar", "typing-extensions"]
 
 [[package]]
 name = "graphlib-backport"
-version = "1.0.3"
+version = "1.1.0"
 description = "Backport of the Python 3.9 graphlib module for Python 3.6+"
-category = "main"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
-    {file = "graphlib_backport-1.0.3-py3-none-any.whl", hash = "sha256:24246967b9e7e6a91550bc770e6169585d35aa32790258579a8a3899a8c18fde"},
-    {file = "graphlib_backport-1.0.3.tar.gz", hash = "sha256:7bb8fc7757b8ae4e6d8000a26cd49e9232aaa9a3aa57edb478474b8424bfaae2"},
+    {file = "graphlib_backport-1.1.0-py3-none-any.whl", hash = "sha256:eccacf9f2126cdf89ce32a6018c88e1ecd3e4898a07568add6e1907a439055ba"},
+    {file = "graphlib_backport-1.1.0.tar.gz", hash = "sha256:00a7888b21e5393064a133209cb5d3b3ef0a2096cf023914c9d778dff5644125"},
 ]
 
 [[package]]
 name = "greenlet"
-version = "2.0.2"
+version = "3.0.3"
 description = "Lightweight in-process concurrent programming"
-category = "main"
-optional = false
-python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
-files = [
-    {file = "greenlet-2.0.2-cp27-cp27m-macosx_10_14_x86_64.whl", hash = "sha256:bdfea8c661e80d3c1c99ad7c3ff74e6e87184895bbaca6ee8cc61209f8b9b85d"},
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+    {file = "greenlet-3.0.3-cp39-cp39-win_amd64.whl", hash = "sha256:c5ee858cfe08f34712f548c3c363e807e7186f03ad7a5039ebadb29e8c6be067"},
+    {file = "greenlet-3.0.3.tar.gz", hash = "sha256:43374442353259554ce33599da8b692d5aa96f8976d567d4badf263371fbe491"},
 ]
 
 [package.extras]
-docs = ["Sphinx", "docutils (<0.18)"]
+docs = ["Sphinx", "furo"]
 test = ["objgraph", "psutil"]
 
 [[package]]
 name = "humanfriendly"
 version = "10.0"
 description = "Human friendly output for text interfaces using Python"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -682,65 +627,60 @@ files = [
 ]
 
 [package.dependencies]
-pyreadline = {version = "*", markers = "sys_platform == \"win32\" and python_version < \"3.8\""}
 pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_version >= \"3.8\""}
 
 [[package]]
 name = "idna"
-version = "3.4"
+version = "3.7"
 description = "Internationalized Domain Names in Applications (IDNA)"
-category = "main"
 optional = false
 python-versions = ">=3.5"
 files = [
-    {file = "idna-3.4-py3-none-any.whl", hash = "sha256:90b77e79eaa3eba6de819a0c442c0b4ceefc341a7a2ab77d7562bf49f425c5c2"},
-    {file = "idna-3.4.tar.gz", hash = "sha256:814f528e8dead7d329833b91c5faa87d60bf71824cd12a7530b5526063d02cb4"},
+    {file = "idna-3.7-py3-none-any.whl", hash = "sha256:82fee1fc78add43492d3a1898bfa6d8a904cc97d8427f683ed8e798d07761aa0"},
+    {file = "idna-3.7.tar.gz", hash = "sha256:028ff3aadf0609c1fd278d8ea3089299412a7a8b9bd005dd08b9f8285bcb5cfc"},
 ]
 
 [[package]]
 name = "importlib-metadata"
-version = "4.2.0"
+version = "8.1.0"
 description = "Read metadata from Python packages"
-category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.8"
 files = [
-    {file = "importlib_metadata-4.2.0-py3-none-any.whl", hash = "sha256:057e92c15bc8d9e8109738a48db0ccb31b4d9d5cfbee5a8670879a30be66304b"},
-    {file = "importlib_metadata-4.2.0.tar.gz", hash = "sha256:b7e52a1f8dec14a75ea73e0891f3060099ca1d8e6a462a4dff11c3e119ea1b31"},
+    {file = "importlib_metadata-8.1.0-py3-none-any.whl", hash = "sha256:3cd29f739ed65973840b068e3132135ce954c254d48b5b640484467ef7ab3c8c"},
+    {file = "importlib_metadata-8.1.0.tar.gz", hash = "sha256:fcdcb1d5ead7bdf3dd32657bb94ebe9d2aabfe89a19782ddc32da5041d6ebfb4"},
 ]
 
 [package.dependencies]
-typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""}
 zipp = ">=0.5"
 
 [package.extras]
-docs = ["jaraco.packaging (>=8.2)", "rst.linker (>=1.9)", "sphinx"]
-testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pep517", "pyfakefs", "pytest (>=4.6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.0.1)", "pytest-flake8", "pytest-mypy"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+perf = ["ipython"]
+test = ["flufl.flake8", "importlib-resources (>=1.3)", "jaraco.test (>=5.4)", "packaging", "pyfakefs", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-perf (>=0.9.2)", "pytest-ruff (>=0.2.1)"]
 
 [[package]]
 name = "importlib-resources"
-version = "5.12.0"
+version = "6.4.0"
 description = "Read resources from Python packages"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "importlib_resources-5.12.0-py3-none-any.whl", hash = "sha256:7b1deeebbf351c7578e09bf2f63fa2ce8b5ffec296e0d349139d43cca061a81a"},
-    {file = "importlib_resources-5.12.0.tar.gz", hash = "sha256:4be82589bf5c1d7999aedf2a45159d10cb3ca4f19b2271f8792bc8e6da7b22f6"},
+    {file = "importlib_resources-6.4.0-py3-none-any.whl", hash = "sha256:50d10f043df931902d4194ea07ec57960f66a80449ff867bfe782b4c486ba78c"},
+    {file = "importlib_resources-6.4.0.tar.gz", hash = "sha256:cdb2b453b8046ca4e3798eb1d84f3cce1446a0e8e7b5ef4efb600f19fc398145"},
 ]
 
 [package.dependencies]
 zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["flake8 (<5)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["jaraco.test (>=5.4)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy", "pytest-ruff (>=0.2.1)", "zipp (>=3.17)"]
 
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -752,7 +692,6 @@ files = [
 name = "interface-meta"
 version = "1.3.0"
 description = "`interface_meta` provides a convenient way to expose an extensible API with enforced method signatures and consistent documentation."
-category = "main"
 optional = false
 python-versions = ">=3.7,<4.0"
 files = [
@@ -762,32 +701,27 @@ files = [
 
 [[package]]
 name = "isort"
-version = "5.11.5"
+version = "5.13.2"
 description = "A Python utility / library to sort Python imports."
-category = "dev"
 optional = false
-python-versions = ">=3.7.0"
+python-versions = ">=3.8.0"
 files = [
-    {file = "isort-5.11.5-py3-none-any.whl", hash = "sha256:ba1d72fb2595a01c7895a5128f9585a5cc4b6d395f1c8d514989b9a7eb2a8746"},
-    {file = "isort-5.11.5.tar.gz", hash = "sha256:6be1f76a507cb2ecf16c7cf14a37e41609ca082330be4e3436a18ef74add55db"},
+    {file = "isort-5.13.2-py3-none-any.whl", hash = "sha256:8ca5e72a8d85860d5a3fa69b8745237f2939afe12dbf656afbcb47fe72d947a6"},
+    {file = "isort-5.13.2.tar.gz", hash = "sha256:48fdfcb9face5d58a4f6dde2e72a1fb8dcaf8ab26f95ab49fab84c2ddefb0109"},
 ]
 
 [package.extras]
-colors = ["colorama (>=0.4.3,<0.5.0)"]
-pipfile-deprecated-finder = ["pip-shims (>=0.5.2)", "pipreqs", "requirementslib"]
-plugins = ["setuptools"]
-requirements-deprecated-finder = ["pip-api", "pipreqs"]
+colors = ["colorama (>=0.4.6)"]
 
 [[package]]
 name = "jinja2"
-version = "3.1.2"
+version = "3.1.4"
 description = "A very fast and expressive template engine."
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "Jinja2-3.1.2-py3-none-any.whl", hash = "sha256:6088930bfe239f0e6710546ab9c19c9ef35e29792895fed6e6e31a023a182a61"},
-    {file = "Jinja2-3.1.2.tar.gz", hash = "sha256:31351a702a408a9e7595a8fc6150fc3f43bb6bf7e319770cbc0db9df9437e852"},
+    {file = "jinja2-3.1.4-py3-none-any.whl", hash = "sha256:bc5dd2abb727a5319567b7a813e6a2e7318c39f4f487cfe6c89c6f9c7d25197d"},
+    {file = "jinja2-3.1.4.tar.gz", hash = "sha256:4a3aee7acbbe7303aede8e9648d13b8bf88a429282aa6122a993f0ac800cb369"},
 ]
 
 [package.dependencies]
@@ -798,108 +732,121 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "jsonschema"
-version = "4.17.3"
+version = "4.23.0"
 description = "An implementation of JSON Schema validation for Python"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "jsonschema-4.17.3-py3-none-any.whl", hash = "sha256:a870ad254da1a8ca84b6a2905cac29d265f805acc57af304784962a2aa6508f6"},
-    {file = "jsonschema-4.17.3.tar.gz", hash = "sha256:0f864437ab8b6076ba6707453ef8f98a6a0d512a80e93f8abdb676f737ecb60d"},
+    {file = "jsonschema-4.23.0-py3-none-any.whl", hash = "sha256:fbadb6f8b144a8f8cf9f0b89ba94501d143e50411a1278633f56a7acf7fd5566"},
+    {file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"},
 ]
 
 [package.dependencies]
-attrs = ">=17.4.0"
-importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
+attrs = ">=22.2.0"
 importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+jsonschema-specifications = ">=2023.03.6"
 pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
-pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
-typing-extensions = {version = "*", markers = "python_version < \"3.8\""}
+referencing = ">=0.28.4"
+rpds-py = ">=0.7.1"
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
-format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=24.6.0)"]
+
+[[package]]
+name = "jsonschema-specifications"
+version = "2023.12.1"
+description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "jsonschema_specifications-2023.12.1-py3-none-any.whl", hash = "sha256:87e4fdf3a94858b8a2ba2778d9ba57d8a9cafca7c7489c46ba0d30a8bc6a9c3c"},
+    {file = "jsonschema_specifications-2023.12.1.tar.gz", hash = "sha256:48a76787b3e70f5ed53f1160d2b81f586e4ca6d1548c5de7085d1682674764cc"},
+]
+
+[package.dependencies]
+importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+referencing = ">=0.31.0"
 
 [[package]]
 name = "jupyter-core"
-version = "4.12.0"
+version = "5.7.2"
 description = "Jupyter core package. A base package on which Jupyter projects rely."
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "jupyter_core-4.12.0-py3-none-any.whl", hash = "sha256:a54672c539333258495579f6964144924e0aa7b07f7069947bef76d7ea5cb4c1"},
-    {file = "jupyter_core-4.12.0.tar.gz", hash = "sha256:87f39d7642412ae8a52291cc68e71ac01dfa2c735df2701f8108251d51b4f460"},
+    {file = "jupyter_core-5.7.2-py3-none-any.whl", hash = "sha256:4f7315d2f6b4bcf2e3e7cb6e46772eba760ae459cd1f59d29eb57b0a01bd7409"},
+    {file = "jupyter_core-5.7.2.tar.gz", hash = "sha256:aa5f8d32bbf6b431ac830496da7392035d6f61b4f54872f15c4bd2a9c3f536d9"},
 ]
 
 [package.dependencies]
-pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""}
-traitlets = "*"
+platformdirs = ">=2.5"
+pywin32 = {version = ">=300", markers = "sys_platform == \"win32\" and platform_python_implementation != \"PyPy\""}
+traitlets = ">=5.3"
 
 [package.extras]
-test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
+docs = ["myst-parser", "pydata-sphinx-theme", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "traitlets"]
+test = ["ipykernel", "pre-commit", "pytest (<8)", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "lazy-object-proxy"
-version = "1.9.0"
+version = "1.10.0"
 description = "A fast and thorough lazy object proxy."
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "lazy-object-proxy-1.9.0.tar.gz", hash = "sha256:659fb5809fa4629b8a1ac5106f669cfc7bef26fbb389dda53b3e010d1ac4ebae"},
-    {file = "lazy_object_proxy-1.9.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:b40387277b0ed2d0602b8293b94d7257e17d1479e257b4de114ea11a8cb7f2d7"},
-    {file = "lazy_object_proxy-1.9.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e8c6cfb338b133fbdbc5cfaa10fe3c6aeea827db80c978dbd13bc9dd8526b7d4"},
-    {file = "lazy_object_proxy-1.9.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:721532711daa7db0d8b779b0bb0318fa87af1c10d7fe5e52ef30f8eff254d0cd"},
-    {file = "lazy_object_proxy-1.9.0-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:66a3de4a3ec06cd8af3f61b8e1ec67614fbb7c995d02fa224813cb7afefee701"},
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 description = "Python port of markdown-it. Markdown parsing, done right!"
-category = "main"
 optional = false
-python-versions = ">=3.7"
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 [package.dependencies]
 mdurl = ">=0.1,<1.0"
-typing_extensions = {version = ">=3.7.4", markers = "python_version < \"3.8\""}
 
 [package.extras]
 benchmarking = ["psutil", "pytest", "pytest-benchmark"]
@@ -908,84 +855,82 @@ compare = ["commonmark (>=0.9,<1.0)", "markdown (>=3.4,<4.0)", "mistletoe (>=1.0
 linkify = ["linkify-it-py (>=1,<3)"]
 plugins = ["mdit-py-plugins"]
 profiling = ["gprof2dot"]
-rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
+rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
 testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
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 python-versions = ">=3.7"
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 name = "mccabe"
 version = "0.6.1"
 description = "McCabe checker, plugin for flake8"
-category = "dev"
 optional = false
 python-versions = "*"
 files = [
@@ -997,7 +942,6 @@ files = [
 name = "mdurl"
 version = "0.1.2"
 description = "Markdown URL utilities"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1005,28 +949,10 @@ files = [
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 ]
 
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-description = "Rolling backport of unittest.mock for all Pythons"
-category = "main"
-optional = false
-python-versions = ">=3.6"
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-
 [[package]]
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 version = "9.1.0"
 description = "More routines for operating on iterables, beyond itertools"
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 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1038,7 +964,6 @@ files = [
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 version = "1.0.0"
 description = "Type system extensions for programs checked with the mypy type checker."
-category = "dev"
 optional = false
 python-versions = ">=3.5"
 files = [
@@ -1048,169 +973,73 @@ files = [
 
 [[package]]
 name = "nbformat"
-version = "5.8.0"
+version = "5.10.4"
 description = "The Jupyter Notebook format"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [package.dependencies]
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-importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.8\""}
+fastjsonschema = ">=2.15"
 jsonschema = ">=2.6"
-jupyter-core = "*"
+jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0"
 traitlets = ">=5.1"
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"]
 test = ["pep440", "pre-commit", "pytest", "testpath"]
 
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-test = ["pytest", "pytest-cov"]
-
 [[package]]
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-category = "main"
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 packaging = ">=17"
 
 [package.extras]
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+typing = ["tox"]
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 [[package]]
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 version = "1.24.4"
 description = "Fundamental package for array computing in Python"
-category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
@@ -1246,68 +1075,82 @@ files = [
 
 [[package]]
 name = "packaging"
-version = "23.1"
+version = "23.2"
 description = "Core utilities for Python packages"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [[package]]
 name = "pandas"
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+tzdata = ">=2022.1"
 
 [package.extras]
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 [[package]]
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 description = "Bring colors to your terminal."
-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1317,21 +1160,19 @@ files = [
 
 [[package]]
 name = "pathspec"
-version = "0.11.2"
+version = "0.12.1"
 description = "Utility library for gitignore style pattern matching of file paths."
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [[package]]
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 description = "Resolve a name to an object."
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 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1341,50 +1182,42 @@ files = [
 
 [[package]]
 name = "plac"
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+version = "1.4.3"
 description = "The smartest command line arguments parser in the world"
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 python-versions = "*"
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 [[package]]
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-version = "3.10.0"
-description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
-category = "dev"
+version = "4.2.2"
+description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
-[package.dependencies]
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-
 [package.extras]
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-test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4)", "pytest-cov (>=4.1)", "pytest-mock (>=3.11.1)"]
+docs = ["furo (>=2023.9.10)", "proselint (>=0.13)", "sphinx (>=7.2.6)", "sphinx-autodoc-typehints (>=1.25.2)"]
+test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.4.3)", "pytest-cov (>=4.1)", "pytest-mock (>=3.12)"]
+type = ["mypy (>=1.8)"]
 
 [[package]]
 name = "pluggy"
-version = "1.2.0"
+version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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+    {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
 ]
 
-[package.dependencies]
-importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
-
 [package.extras]
 dev = ["pre-commit", "tox"]
 testing = ["pytest", "pytest-benchmark"]
@@ -1393,7 +1226,6 @@ testing = ["pytest", "pytest-benchmark"]
 name = "poethepoet"
 version = "0.10.0"
 description = "A task runner that works well with poetry."
-category = "dev"
 optional = false
 python-versions = ">=3.6,<4.0"
 files = [
@@ -1407,26 +1239,28 @@ tomlkit = ">=0.6.0,<1.0.0"
 
 [[package]]
 name = "psutil"
-version = "5.9.5"
+version = "6.0.0"
 description = "Cross-platform lib for process and system monitoring in Python."
-category = "main"
 optional = false
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@@ -1436,7 +1270,6 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"]
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 version = "2.7.0"
 description = "PuLP is an LP modeler written in python. PuLP can generate MPS or LP files and call GLPK, COIN CLP/CBC, CPLEX, and GUROBI to solve linear problems."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -1444,23 +1277,10 @@ files = [
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 ]
 
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-python-versions = "*"
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 description = "Wrapper to manage deprecations"
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 optional = false
 python-versions = ">=3.7,<3.12"
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@@ -1476,7 +1296,6 @@ typing-extensions = ">=3.10.0"
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 version = "1.11.0"
 description = "library with cross-python path, ini-parsing, io, code, log facilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 files = [
@@ -1486,47 +1305,13 @@ files = [
 
 [[package]]
 name = "pybids"
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+version = "0.16.5"
 description = "bids: interface with datasets conforming to BIDS"
-category = "main"
-optional = false
-python-versions = ">=3.7"
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-sqlalchemy = "<1.4.0.dev0"
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@@ -1541,13 +1326,13 @@ scipy = ">=1.5"
 sqlalchemy = ">=1.3.16"
 
 [package.extras]
-ci-tests = ["pybids[test]", "pytest-xdist"]
+ci-tests = ["pybids[test]"]
 dev = ["pybids[doc,plotting,test]"]
-doc = ["jupytext", "myst-nb", "numpydoc", "sphinx (>=2.2,!=5.1.0)", "sphinx-rtd-theme"]
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 model-reports = ["altair", "jinja2"]
 plotting = ["graphviz"]
-test = ["altair", "bsmschema", "coverage[toml]", "pytest (>=3.3)", "pytest-cov"]
+test = ["altair", "bsmschema", "coverage[toml]", "pytest (>=3.3)", "pytest-cov", "pytest-xdist"]
 tests = ["pybids[test]"]
 tutorial = ["ipykernel", "jinja2", "jupyter-client", "markupsafe", "nbconvert"]
 
@@ -1555,7 +1340,6 @@ tutorial = ["ipykernel", "jinja2", "jupyter-client", "markupsafe", "nbconvert"]
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 version = "2.8.0"
 description = "Python style guide checker"
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 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
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@@ -1567,7 +1351,6 @@ files = [
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-category = "dev"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 files = [
@@ -1577,24 +1360,22 @@ files = [
 
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+version = "2.18.0"
 description = "Pygments is a syntax highlighting package written in Python."
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-python-versions = ">=3.7"
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 [package.extras]
-plugins = ["importlib-metadata"]
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 name = "pygraphviz"
 version = "1.7"
 description = "Python interface to Graphviz"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1603,45 +1384,34 @@ files = [
 
 [[package]]
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 platformdirs = ">=2.2.0"
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 typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
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 version = "6.2.5"
 description = "pytest: simple powerful testing with Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
 files = [
@@ -1702,7 +1434,6 @@ files = [
 atomicwrites = {version = ">=1.0", markers = "sys_platform == \"win32\""}
 attrs = ">=19.2.0"
 colorama = {version = "*", markers = "sys_platform == \"win32\""}
-importlib-metadata = {version = ">=0.12", markers = "python_version < \"3.8\""}
 iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<2.0"
@@ -1714,14 +1445,13 @@ testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xm
 
 [[package]]
 name = "pytest-console-scripts"
-version = "1.4.0"
+version = "1.4.1"
 description = "Pytest plugin for testing console scripts"
-category = "dev"
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-python-versions = ">=3.7"
+python-versions = ">=3.8"
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 [package.dependencies]
@@ -1730,14 +1460,13 @@ pytest = ">=4.0.0"
 
 [[package]]
 name = "python-dateutil"
-version = "2.8.2"
+version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
-category = "main"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
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 [package.dependencies]
@@ -1745,14 +1474,13 @@ six = ">=1.5"
 
 [[package]]
 name = "python-slugify"
-version = "8.0.1"
+version = "8.0.4"
 description = "A Python slugify application that also handles Unicode"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.dependencies]
@@ -1763,21 +1491,19 @@ unidecode = ["Unidecode (>=1.1.1)"]
 
 [[package]]
 name = "pytz"
-version = "2023.3.post1"
+version = "2024.1"
 description = "World timezone definitions, modern and historical"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
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 version = "306"
 description = "Python for Window Extensions"
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 optional = false
 python-versions = "*"
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@@ -1801,7 +1527,6 @@ files = [
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 description = "YAML parser and emitter for Python"
-category = "main"
 optional = false
 python-versions = ">=3.6"
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+version = "0.35.1"
+description = "JSON Referencing + Python"
+optional = false
+python-versions = ">=3.8"
+files = [
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+rpds-py = ">=0.7.0"
+
 [[package]]
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+version = "2.32.3"
 description = "Python HTTP for Humans."
-category = "main"
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 [package.dependencies]
@@ -1883,7 +1623,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
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 description = "An easy to use, but functional decorator for retrying on exceptions."
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 optional = false
 python-versions = ">=3.7"
 files = [
@@ -1893,14 +1632,13 @@ files = [
 
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 [package.dependencies]
@@ -1912,196 +1650,262 @@ typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.9
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 [[package]]
-name = "scipy"
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-description = "SciPy: Scientific Library for Python"
-category = "main"
+name = "rpds-py"
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 ]
 
 [[package]]
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -2111,31 +1915,33 @@ files = [
 
 [[package]]
 name = "smart-open"
-version = "6.4.0"
+version = "7.0.4"
 description = "Utils for streaming large files (S3, HDFS, GCS, Azure Blob Storage, gzip, bz2...)"
-category = "main"
 optional = false
-python-versions = ">=3.6,<4.0"
+python-versions = "<4.0,>=3.7"
 files = [
-    {file = "smart_open-6.4.0-py3-none-any.whl", hash = "sha256:8d3ef7e6997e8e42dd55c74166ed21e6ac70664caa32dd940b26d54a8f6b4142"},
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+    {file = "smart_open-7.0.4.tar.gz", hash = "sha256:62b65852bdd1d1d516839fcb1f6bc50cd0f16e05b4ec44b52f43d38bcb838524"},
 ]
 
+[package.dependencies]
+wrapt = "*"
+
 [package.extras]
-all = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "paramiko", "requests"]
+all = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "paramiko", "requests", "zstandard"]
 azure = ["azure-common", "azure-core", "azure-storage-blob"]
 gcs = ["google-cloud-storage (>=2.6.0)"]
 http = ["requests"]
 s3 = ["boto3"]
 ssh = ["paramiko"]
-test = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "moto[server]", "paramiko", "pytest", "pytest-rerunfailures", "requests", "responses"]
+test = ["azure-common", "azure-core", "azure-storage-blob", "boto3", "google-cloud-storage (>=2.6.0)", "moto[server]", "paramiko", "pytest", "pytest-rerunfailures", "requests", "responses", "zstandard"]
 webhdfs = ["requests"]
+zst = ["zstandard"]
 
 [[package]]
 name = "smmap"
 version = "5.0.1"
 description = "A pure Python implementation of a sliding window memory map manager"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2147,7 +1953,6 @@ files = [
 name = "snakebids"
 version = "0.8.1"
 description = "BIDS integration into snakemake workflows"
-category = "main"
 optional = false
 python-versions = ">=3.7,<3.12"
 files = [
@@ -2163,12 +1968,8 @@ cookiecutter = ">=2.1.1,<3.0.0"
 more-itertools = ">=8,<10"
 pandas = {version = ">=1.3", markers = "python_full_version >= \"3.7.1\""}
 pvandyken-deprecated = "0.0.3"
-pybids = [
-    {version = ">=0.15.0,<0.16.0", markers = "python_version < \"3.8\""},
-    {version = ">=0.16.0,<0.17.0", markers = "python_version >= \"3.8\""},
-]
+pybids = {version = ">=0.16.0,<0.17.0", markers = "python_version >= \"3.8\""}
 PyYAML = ">=6,<7"
-scipy = {version = "<1.8", markers = "python_version == \"3.7\""}
 snakemake = {version = ">=5.28.0", markers = "python_version >= \"3.7\""}
 typing-extensions = ">=3.10.0"
 
@@ -2176,7 +1977,6 @@ typing-extensions = ">=3.10.0"
 name = "snakefmt"
 version = "0.8.0"
 description = "The uncompromising Snakemake code formatter"
-category = "dev"
 optional = false
 python-versions = ">=3.7.0,<4.0.0"
 files = [
@@ -2187,14 +1987,12 @@ files = [
 [package.dependencies]
 black = ">=22.1.0,<23.0.0"
 click = ">=8.0.0,<9.0.0"
-importlib_metadata = {version = ">=1.7.0,<5.0", markers = "python_version < \"3.8\""}
 toml = ">=0.10.2,<0.11.0"
 
 [[package]]
 name = "snakemake"
 version = "7.32.4"
 description = "Workflow management system to create reproducible and scalable data analyses"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2235,118 +2033,70 @@ reports = ["pygments"]
 
 [[package]]
 name = "sqlalchemy"
-version = "1.3.24"
+version = "2.0.31"
 description = "Database Abstraction Library"
-category = "main"
-optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
-files = [
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 ]
 
 [package.dependencies]
-greenlet = {version = "!=0.4.17", markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""}
-typing-extensions = ">=4.2.0"
+greenlet = {version = "!=0.4.17", markers = "python_version < \"3.13\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"}
+typing-extensions = ">=4.6.0"
 
 [package.extras]
 aiomysql = ["aiomysql (>=0.2.0)", "greenlet (!=0.4.17)"]
-aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing-extensions (!=3.10.0.1)"]
+aioodbc = ["aioodbc", "greenlet (!=0.4.17)"]
+aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing_extensions (!=3.10.0.1)"]
 asyncio = ["greenlet (!=0.4.17)"]
 asyncmy = ["asyncmy (>=0.2.3,!=0.2.4,!=0.2.6)", "greenlet (!=0.4.17)"]
 mariadb-connector = ["mariadb (>=1.0.1,!=1.1.2,!=1.1.5)"]
@@ -2356,7 +2106,7 @@ mssql-pyodbc = ["pyodbc"]
 mypy = ["mypy (>=0.910)"]
 mysql = ["mysqlclient (>=1.4.0)"]
 mysql-connector = ["mysql-connector-python"]
-oracle = ["cx-oracle (>=7)"]
+oracle = ["cx_oracle (>=8)"]
 oracle-oracledb = ["oracledb (>=1.0.1)"]
 postgresql = ["psycopg2 (>=2.7)"]
 postgresql-asyncpg = ["asyncpg", "greenlet (!=0.4.17)"]
@@ -2366,28 +2116,12 @@ postgresql-psycopg2binary = ["psycopg2-binary"]
 postgresql-psycopg2cffi = ["psycopg2cffi"]
 postgresql-psycopgbinary = ["psycopg[binary] (>=3.0.7)"]
 pymysql = ["pymysql"]
-sqlcipher = ["sqlcipher3-binary"]
-
-[[package]]
-name = "sseclient"
-version = "0.0.27"
-description = "Python client library for reading Server Sent Event streams."
-category = "main"
-optional = false
-python-versions = "*"
-files = [
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-]
-
-[package.dependencies]
-requests = ">=2.9"
-six = "*"
+sqlcipher = ["sqlcipher3_binary"]
 
 [[package]]
 name = "stopit"
 version = "1.1.2"
 description = "Timeout control decorator and context managers, raise any exception in another thread"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2398,7 +2132,6 @@ files = [
 name = "tabulate"
 version = "0.9.0"
 description = "Pretty-print tabular data"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2411,14 +2144,13 @@ widechars = ["wcwidth"]
 
 [[package]]
 name = "termcolor"
-version = "2.3.0"
+version = "2.4.0"
 description = "ANSI color formatting for output in terminal"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 ]
 
 [package.extras]
@@ -2428,7 +2160,6 @@ tests = ["pytest", "pytest-cov"]
 name = "text-unidecode"
 version = "1.3"
 description = "The most basic Text::Unidecode port"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2440,7 +2171,6 @@ files = [
 name = "throttler"
 version = "1.2.2"
 description = "Zero-dependency Python package for easy throttling with asyncio support"
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2455,7 +2185,6 @@ dev = ["aiohttp (>=3.8)", "codecov (>=2.1)", "flake8 (>=4.0)", "pytest (>=7.0)",
 name = "toml"
 version = "0.10.2"
 description = "Python Library for Tom's Obvious, Minimal Language"
-category = "main"
 optional = false
 python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 files = [
@@ -2467,7 +2196,6 @@ files = [
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2477,21 +2205,19 @@ files = [
 
 [[package]]
 name = "tomlkit"
-version = "0.12.1"
+version = "0.13.0"
 description = "Style preserving TOML library"
-category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [[package]]
 name = "toposort"
 version = "1.10"
 description = "Implements a topological sort algorithm."
-category = "main"
 optional = false
 python-versions = "*"
 files = [
@@ -2501,220 +2227,180 @@ files = [
 
 [[package]]
 name = "traitlets"
-version = "5.9.0"
+version = "5.14.3"
 description = "Traitlets Python configuration system"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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 [package.extras]
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-test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.2)", "pytest-mock", "pytest-mypy-testing"]
 
 [[package]]
-name = "typed-ast"
-version = "1.5.5"
-description = "a fork of Python 2 and 3 ast modules with type comment support"
-category = "dev"
+name = "types-python-dateutil"
+version = "2.9.0.20240316"
+description = "Typing stubs for python-dateutil"
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-python-versions = ">=3.6"
+python-versions = ">=3.8"
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 ]
 
 [[package]]
 name = "yte"
-version = "1.5.1"
+version = "1.5.4"
 description = "A YAML template engine with Python expressions"
-category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "yte-1.5.1-py3-none-any.whl", hash = "sha256:fd646bc47c355f202f14b7476996de4a31501cf1e107ac7ad8e19edcd786d30b"},
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+    {file = "yte-1.5.4-py3-none-any.whl", hash = "sha256:14ccfcb57d60b7652041b606129851423805140b22f52f5152f7c2692cd7b905"},
+    {file = "yte-1.5.4.tar.gz", hash = "sha256:d2d77e53eafca74f58234fcd3fea28cc0a719e4f3784911511e35e86594bc880"},
 ]
 
 [package.dependencies]
-dpath = ">=2.0,<3.0"
+dpath = ">=2.1,<3.0"
 plac = ">=1.3.4,<2.0.0"
 pyyaml = ">=6.0,<7.0"
 
 [[package]]
 name = "zipp"
-version = "3.15.0"
+version = "3.19.2"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
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-    {file = "zipp-3.15.0.tar.gz", hash = "sha256:112929ad649da941c23de50f356a2b5570c954b65150642bccdd66bf194d224b"},
+    {file = "zipp-3.19.2-py3-none-any.whl", hash = "sha256:f091755f667055f2d02b32c53771a7a6c8b47e1fdbc4b72a8b9072b3eef8015c"},
+    {file = "zipp-3.19.2.tar.gz", hash = "sha256:bf1dcf6450f873a13e952a29504887c89e6de7506209e5b1bcc3460135d4de19"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"]
+doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [metadata]
 lock-version = "2.0"
-python-versions = ">=3.7.1,<3.10"
-content-hash = "38356091d070c09fd5ac91d1d9f25b5cfa8256fb8d9bdbda3e505aab8ebc21c0"
+python-versions = ">=3.8,<3.10"
+content-hash = "49e15674dd8aa7c835ebff1aceecbeea5902e7d1beb502df5f5f62b299204ca8"
diff --git a/pyproject.toml b/pyproject.toml
index a895e24b..1d030fba 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -5,14 +5,14 @@ description = "BIDS App for Hippocampal AutoTop (automated hippocampal unfolding
 authors = ["Jordan DeKraker & Ali Khan <alik@robarts.ca>"]
 
 [tool.poetry.dependencies]
-python = ">=3.7.1,<3.10"
+python = ">=3.8,<3.10"
 snakemake = ">=6.0.0"
-snakebids = ">=0.5.1"
+snakebids = "^0.8.1"
 appdirs = "^1.4.4"
 Jinja2 = "^3.0.3"
 pygraphviz = "1.7"
 Pygments = "^2.10.0"
-
+pulp = "<2.8.0"
 
 [tool.poetry.dev-dependencies]
 flake8 = "^4.0.1"