diff --git a/hippunfold/config/snakebids.yml b/hippunfold/config/snakebids.yml index 4cdfe362..6fbd7a0e 100644 --- a/hippunfold/config/snakebids.yml +++ b/hippunfold/config/snakebids.yml @@ -469,14 +469,14 @@ nnunet_model: synthseg_v0.1: 'zenodo.org/record/8184230/files/trained_model.3d_fullres.Task102_synsegGenDetailed.nnUNetTrainerV2.model_best.tar' synthseg_v0.2: 'zenodo.org/record/8184230/files/trained_model.3d_fullres.Task203_synthseg.nnUNetTrainerV2.model_best.tar' -atlas_links_osf: +atlas_links_url: multihist7: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b782827451220b86dd8/?zip=' bigbrain: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8b13d27b123094c96f/?zip=' magdeburg: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8013d27b122f94c938/?zip=' freesurfer: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395b8513d27b123094c96a/?zip=' #to get hash, see https://github.com/CenterForOpenScience/osf.io/issues/8256#issuecomment-379833911 -template_links_osf: +template_links_url: CITI168: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395bf0282745121fb86a93/?zip=' dHCP: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395bff13d27b123094c9b4/?zip=' MBMv2: 'files.ca-1.osf.io/v1/resources/v8acf/providers/osfstorage/65395c0887852d133ca597dd/?zip=' diff --git a/hippunfold/workflow/rules/downloads.smk b/hippunfold/workflow/rules/downloads.smk index 5f406b8b..be03ad96 100644 --- a/hippunfold/workflow/rules/downloads.smk +++ b/hippunfold/workflow/rules/downloads.smk @@ -1,6 +1,6 @@ rule download_atlas: params: - url=config["atlas_links_osf"][config["atlas"]], + url=config["atlas_links_url"][config["atlas"]], output: model_zip=os.path.join(download_dir, config["atlas"] + ".zip"), container: @@ -11,7 +11,7 @@ rule download_atlas: rule download_template: params: - url=config["template_links_osf"][config["template"]], + url=config["template_links_url"][config["template"]], output: model_zip=os.path.join(download_dir, config["template"] + ".zip"), container: @@ -22,7 +22,7 @@ rule download_template: rule download_template_shape: params: - url=config["template_links_osf"][config["inject_template"]], + url=config["template_links_url"][config["inject_template"]], output: model_zip=os.path.join(download_dir, config["inject_template"] + ".zip"), container: