diff --git a/hippunfold/workflow/rules/native_surf.smk b/hippunfold/workflow/rules/native_surf.smk index e3922030..2379caf1 100644 --- a/hippunfold/workflow/rules/native_surf.smk +++ b/hippunfold/workflow/rules/native_surf.smk @@ -1350,35 +1350,6 @@ rule resample_native_metric_to_std_density: shell: "wb_command -metric-resample {input.native_metric} {input.native_unfold} {input.ref_unfold} BARYCENTRIC {output.metric_resampled} -bypass-sphere-check" -""" -rule cp_surf_to_root: - input: - native_resampled=bids( - root=work, - datatype="surf", - suffix="{surf_name}.surf.gii", - space="{space}", - den="{density}", - hemi="{hemi}", - label="{label}", - **inputs.subj_wildcards, - ), - output: - native_resampled=bids( - root=root, - datatype="surf", - suffix="{surf_name,midthickness}.surf.gii", - space="{space}", - den="{density}", - hemi="{hemi}", - label="{label}", - **inputs.subj_wildcards, - ), - group: 'subj' - shell: - "cp {input} {output}" -""" - # --- resampling from atlasnative to native vertices rule resample_atlas_subfields_to_native_surf: @@ -1722,31 +1693,3 @@ rule create_spec_file_dentate_native: "subj" shell: "{params.cmds}" - - -""" -rule cp_native_surf_to_root: - input: - native=bids( - root=work, - datatype="surf", - suffix="{surf_name}.surf.gii", - space="{space}", - hemi="{hemi}", - label="{label}", - **inputs.subj_wildcards, - ), - output: - native=bids( - root=root, - datatype="surf", - suffix="{surf_name}.surf.gii", - space="{space}", - hemi="{hemi}", - label="{label}", - **inputs.subj_wildcards, - ), - group: 'subj' - shell: - "cp {input} {output}" -"""