diff --git a/docs/contributing/references.md b/docs/contributing/references.md new file mode 100644 index 00000000..2427d099 --- /dev/null +++ b/docs/contributing/references.md @@ -0,0 +1,11 @@ +# References + +If you use HippUnfold, please cite +- DeKraker, Jordan, Roy AM Haast, Mohamed D. Yousif, Bradley Karat, Jonathan C. Lau, Stefan Köhler, and Ali R. Khan. "Automated hippocampal unfolding for morphometry and subfield segmentation with HippUnfold." elife 11 (2022): e77945. + +If you use a custom UNet model, template, or atlas, please cite to corresponding works: +- Eichert, Nicole, Jordan DeKraker, Amy FD Howard, Istvan N. Huszar, Silei Zhu, Jerome Sallet, Karla L. Miller, Rogier B. Mars, Saad Jbabdi, and Boris C. Bernhardt. "Hippocampal connectivity patterns echo macroscale cortical evolution in the primate brain." bioRxiv (2023): 2023-09. +- DeKraker, Jordan, Jonathan C. Lau, Kayla M. Ferko, Ali R. Khan, and Stefan Köhler. "Hippocampal subfields revealed through unfolding and unsupervised clustering of laminar and morphological features in 3D BigBrain." NeuroImage 206 (2020): 116328. + +After running HippUnfold, consider using the [HippoMaps](https://github.com/MICA-MNI/hippomaps) tools and example analyses: +DeKraker, Jordan, Donna Gift Cabalo, Jessica Royer, Ali R. Khan, Bradley Karat, Oualid Benkarim, Raul Rodriguez-Cruces et al. "HippoMaps: Multiscale cartography of human hippocampal organization." bioRxiv (2024): 2024-02. diff --git a/docs/index.md b/docs/index.md index fc0f14e5..f61f7ba9 100644 --- a/docs/index.md +++ b/docs/index.md @@ -63,6 +63,7 @@ outputs/QC :hidden: :maxdepth: 2 +contributing/references contributing/contributing ```