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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(AnnotateCcubeResults)
export(AnnotateCcubeResults_sv)
export(Assign)
export(AssignWithCcube)
export(AssignWithCcube_sv)
export(CcubeCore)
export(CcubeSVCore)
export(CombineSNVandSVResults)
export(CullEmptyClusters)
export(CullEmptyClusters_sv)
export(CullSmallClusters)
export(CullSmallClusters_sv)
export(GenerateCopyNumberProfile)
export(GenerateSubClonalCNProfile)
export(GetCcf)
export(GetCcf_sv)
export(GetPurity)
export(GetPurity_sv)
export(HasClonalCluster)
export(HasEmptyCluster)
export(MakeCcubeStdPlot)
export(MakeCcubeStdPlot_sv)
export(MapCcf2VafLinear)
export(MapVaf2CcfLinear)
export(MapVaf2CcfPyClone)
export(MergeClusters)
export(MergeClusters_sv)
export(ParseSnvCnaBattenberg)
export(ParseSnvCnaConsensus)
export(ParseSnvCnaOld)
export(ParseSnvCnaPcawg11Format)
export(ParseSnvCnaPreConsensus)
export(RemoveClusterAndReassignVariants)
export(RemoveClusterAndReassignVariantsWithEMsteps)
export(RemoveClusterAndReassignVariantsWithEMsteps_sv)
export(RemoveClusterAndReassignVariantsWithEstep)
export(RemoveClusterAndReassignVariantsWithEstep_sv)
export(RemoveClusterAndReassignVariants_sv)
export(RunCcubePipeline)
export(RunPostAssignPipeline)
export(WritePcawgFormats)
export(WritePcawgFormats_sv)
export(bsxfun.se)
export(ccube_m6)
export(cp2ap)
export(gg_color_hue)
export(vbgmm)
export(vbsmm)