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issue with sce made in CATALYST package #25

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jenkinmt opened this issue Mar 28, 2023 · 0 comments
Open

issue with sce made in CATALYST package #25

jenkinmt opened this issue Mar 28, 2023 · 0 comments

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@jenkinmt
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I'm having an issue with the contourPlot function. I'm using an sce generated in CATALYST containing 60 fcs files from a cytof run.
contourPlot(sce)
--input data class is SingleCellExperiment
Error in reducedDim(indata, reducedDim)[, dimColnames] :
no 'dimnames' attribute for array

When i look in the int_colData of the sce, the reducedDims are there and so are the two columns of data for the UMAP under listData, so am not sure what is going wrong?
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@jenkinmt