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Commits on Aug 26, 2024

• stop rebuilding already-published joss paper

  kdm9

  committed
  5b9c770

• merge latest from holopipe

  kdm9

  committed
  7d07d70

Commits on Jul 3, 2024

• allow for unfiltered variants; bump copyright, minor tweaks

  kdm9

  committed
  f898be4

Commits on Apr 3, 2024

• document config option for external variant calling bed

  kdm9

  committed
  bf15a39

Commits on Mar 25, 2024

• Update DOI in readme to JOSS

  kdm9

  authored
  27ccda3

• Create CITATION.cff

  kdm9

  authored
  8d72022

Commits on Mar 13, 2024

• paper: fix refs

  kdm9

  committed
  867b53d

• paper: fix missing DOI

  kdm9

  committed
  e549bd6

Commits on Feb 20, 2024

• Tiny edits (#21)

  Show description for 90b0e6f
  kdm9

  authored
  90b0e6f

• Tiny edits

  bricoletc

  authored
  750e45c

Commits on Feb 15, 2024

• fix refs

  kdm9

  committed
  b169363

• Detlef comments

  kdm9

  committed
  db8957d

Commits on Feb 1, 2024

• copyediting of paper

  kdm9

  committed
  e5c57e9

• paper: clarity edits

  kdm9

  committed
  d09924b

• paper: final comments from Brice

  kdm9

  committed
  5d63ca7

Commits on Jan 28, 2024

• CI: Caching is pointless, we nuke them anyway

  kdm9

  committed
  8419084

• nuke all outputs before tests

  kdm9

  committed
  3ef9746

Commits on Jan 24, 2024

• tests: automatically use apptainer when not in --quick mode

  kdm9

  committed
  658cbff

• tests: no unbound variable without --quick

  kdm9

  committed
  8c88107

• tests: use https:// for NCBI tax download

  kdm9

  committed
  f3e939c

• Fix typo in README.md (#20)

  kdm9

  authored
  897c690

• Add pointer to tests in README.md

  bricoletc

  committed
  4106443

• Fix typo in README.md

  bricoletc

  authored
  b132bfc

Commits on Jan 23, 2024

• Remove hard python >= 3.11 requirement

  kdm9

  committed
  0c235db

• paper: minor tweaks incorporating peer review discussion

  kdm9

  committed
  2c573ef

• docs: add linux only supported note to paper & readme

  kdm9

  committed
  6f8133f

• tests: stop pinning snakemaek version

  kdm9

  committed
  4c1f911

Commits on Jan 22, 2024

• paper changes during review

  kdm9

  committed
  f6431af

• fix test readme

  kdm9

  committed
  0639e4a

• Various config file documentation updates

  kdm9

  committed
  6ebe5a7

• use miniforge3 not obsolte mambaforge docker img

  kdm9

  committed
  a4c0b07

Commits on Jan 16, 2024

• tests: re-add missing mkdir

  kdm9

  committed
  df8a351

• Clearer test readme

  kdm9

  committed
  59133b0

• test config

  kdm9

  committed
  0ff4898

• better test script structure

  kdm9

  committed
  540c554

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