From 131fc387bee784203abc9717adc4667ada45c911 Mon Sep 17 00:00:00 2001 From: Jaganathan Date: Mon, 18 Feb 2019 12:08:25 -0800 Subject: [PATCH] Edited README --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index d09c67d..6ee1e78 100644 --- a/README.md +++ b/README.md @@ -19,10 +19,10 @@ SpliceAI requires [tensorflow](https://www.tensorflow.org/install/)>=1.2.0, whic ### Usage SpliceAI can be run from the command line: ```sh -spliceai -I input.vcf -O output.vcf -R genome.fa -A annotations.txt +spliceai -I input.vcf -O output.vcf -R genome.fa -A grch37 # or you can pipe the input and output VCFs -cat input.vcf | spliceai -R genome.fa -A annotations.txt > output.vcf +cat input.vcf | spliceai -R genome.fa -A grch37 > output.vcf ``` Options: