diff --git a/pkg/client/client_test.go b/pkg/client/client_test.go
index d30063e2..3d053469 100644
--- a/pkg/client/client_test.go
+++ b/pkg/client/client_test.go
@@ -1757,6 +1757,7 @@ func TestRunLocalWithoutArgs(t *testing.T) {
 		{"run_4", true, "", "a: A package in vendor path"},
 		{"run_5", true, "", "kcl_6: KCL 6\na: sub6\nkcl_7: KCL 7\nb: sub7"},
 		{filepath.Join("run_6", "main"), true, "", "The_sub_kcl_program: Hello Sub World!\nThe_first_kcl_program: Hello World!"},
+		{"run_7", true, "", "hello: Hello World!\nThe_first_kcl_program: Hello World!"},
 	}
 
 	for _, test := range tests {
diff --git a/pkg/client/run.go b/pkg/client/run.go
index ffab514c..31250c82 100644
--- a/pkg/client/run.go
+++ b/pkg/client/run.go
@@ -337,7 +337,7 @@ func (o *RunOptions) applyCompileOptionsFromYaml(workdir string) bool {
 	// transform the relative path to the absolute path in kcl.yaml by workdir
 	var updatedKFilenameList []string
 	for _, kfile := range o.KFilenameList {
-		if !filepath.IsAbs(kfile) {
+		if !filepath.IsAbs(kfile) && !utils.IsModRelativePath(kfile) {
 			kfile = filepath.Join(workdir, kfile)
 		}
 		updatedKFilenameList = append(updatedKFilenameList, kfile)
@@ -354,7 +354,7 @@ func (o *RunOptions) applyCompileOptionsFromKclMod(kclPkg *pkg.KclPkg) bool {
 	var updatedKFilenameList []string
 	// transform the relative path to the absolute path in kcl.yaml by kcl.mod path
 	for _, kfile := range o.KFilenameList {
-		if !filepath.IsAbs(kfile) {
+		if !filepath.IsAbs(kfile) && !utils.IsModRelativePath(kfile) {
 			kfile = filepath.Join(kclPkg.HomePath, kfile)
 		}
 		updatedKFilenameList = append(updatedKFilenameList, kfile)
@@ -374,11 +374,11 @@ func (o *RunOptions) applyCompileOptions(kclPkg *pkg.KclPkg, workDir string) err
 		// All the cli relative path should be transformed to the absolute path by workdir
 		for _, source := range o.Sources {
 			if source.IsLocalPath() {
-				if filepath.IsAbs(source.Path) {
-					compiledFiles = append(compiledFiles, source.Path)
-				} else {
-					compiledFiles = append(compiledFiles, filepath.Join(workDir, source.Path))
+				sPath := source.Path
+				if !filepath.IsAbs(sPath) && !utils.IsModRelativePath(sPath) {
+					sPath = filepath.Join(workDir, sPath)
 				}
+				compiledFiles = append(compiledFiles, sPath)
 			}
 		}
 		o.KFilenameList = compiledFiles
diff --git a/pkg/client/test_data/test_run_options/no_args/run_7/kcl.mod b/pkg/client/test_data/test_run_options/no_args/run_7/kcl.mod
new file mode 100644
index 00000000..b1ce16cf
--- /dev/null
+++ b/pkg/client/test_data/test_run_options/no_args/run_7/kcl.mod
@@ -0,0 +1,10 @@
+[package]
+name = "run_7"
+edition = "v0.9.0"
+version = "0.0.1"
+
+[dependencies]
+helloworld = "0.1.0"
+
+[profile]
+entries = ["main.k", "${helloworld:KCL_MOD}/main.k"]
diff --git a/pkg/client/test_data/test_run_options/no_args/run_7/kcl.mod.lock b/pkg/client/test_data/test_run_options/no_args/run_7/kcl.mod.lock
new file mode 100644
index 00000000..7b80eba3
--- /dev/null
+++ b/pkg/client/test_data/test_run_options/no_args/run_7/kcl.mod.lock
@@ -0,0 +1,5 @@
+[dependencies]
+  [dependencies.helloworld]
+    name = "helloworld"
+    full_name = "helloworld_0.1.0"
+    version = "0.1.0"
diff --git a/pkg/client/test_data/test_run_options/no_args/run_7/main.k b/pkg/client/test_data/test_run_options/no_args/run_7/main.k
new file mode 100644
index 00000000..9d8d829a
--- /dev/null
+++ b/pkg/client/test_data/test_run_options/no_args/run_7/main.k
@@ -0,0 +1 @@
+hello = 'Hello World!'
\ No newline at end of file
diff --git a/pkg/utils/utils.go b/pkg/utils/utils.go
index 20e75809..5dd9380d 100644
--- a/pkg/utils/utils.go
+++ b/pkg/utils/utils.go
@@ -306,6 +306,14 @@ func DirExists(path string) bool {
 	return err == nil
 }
 
+const ModRelativePathPattern = `^\$\{[^}]+:KCL_MOD\}/main\.k$`
+
+// If the path preffix is `${KCL_MOD}` or `${KCL_MOD:xxx}`
+func IsModRelativePath(s string) bool {
+	re := regexp.MustCompile(ModRelativePathPattern)
+	return re.MatchString(s)
+}
+
 // MoveFile will move the file from 'src' to 'dest'.
 // On windows, it will copy the file from 'src' to 'dest', and then delete the file under 'src'.
 // On unix-like systems, it will rename the file from 'src' to 'dest'.
@@ -590,4 +598,4 @@ func AbsTarPath(tarPath string) (string, error) {
 	}
 
 	return absTarPath, nil
-}
\ No newline at end of file
+}