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Vignettes showing how to simulate various crosses #13

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kbroman opened this issue Dec 10, 2020 · 0 comments
Open
7 tasks

Vignettes showing how to simulate various crosses #13

kbroman opened this issue Dec 10, 2020 · 0 comments

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@kbroman
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kbroman commented Dec 10, 2020

Add a series of vignettes showing how to simulate various cross types and create the files needed for R/qtl2, or to convert directly to an R/qtl2 cross2 object. Particularly useful for testing (e.g. of Issues rqtl/qtl2#140 and rqtl/qtl2#141 concerning DOF1 data, for which I have no examples).

  • Diversity Outbred (DO) mice
  • DOF1 (DO crossed to some common 9th strain)
  • Collaborative Cross (CC, 8-way RIL by sibling mating)
  • 8-way MAGIC lines
  • 19-way MAGIC lines
  • Heterogeneous stock (HS)
  • 3-way AIL
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