Changes
- adjust fasta IDs to be under length threshold and return ID map
- change STOP residue from '_' to '*'
- support genetic codes 1, 2, 3, 4, 5, 6, and 11
- support feature-specific genetic code (not yet available)
- add flag to not write protein translations with internal STOP codon (def: write it)
- don't write protein translation if dna_sequence length not a multiple of 3
- improved param retrieval code style
- more explicit vals in unit tests
Changes
- added SpeciesTreeToFASTA() method
Changes
- include 'non_coding_features' for nucleotide/non-CDS queries from Genomes >= 9.0
- added more tests for nucleotide mode
Changes
- handle gene annotation functions from Genomes >= 9.0 (Features >= 3.0)
- support FeatureSets with AnnotatedMetagenomeAssembly features
- added Github Actions testing
- made all test data uploaded
Changes
- Added genome_ref_to_obj_name return value
Changes
- Added AnnotatedMetagenomeAssemblyToFASTA() method
Changes
- patched CheckJob() "Bad Status Line" error