DESCRIPTION

Package: RiboProfiler
Title: Ribo-seq Data Analysis and Visualization
Version: 0.2.3
Author: Jun Zhang
Maintainer: Jun Zhang <3219030654@stu.cpu.edu.cn>
Description: Integrating Ribo-SEQ upstream and downstream analysis process from 
  raw fastq data. Making Ribo-SEQ analysis workflow more easier and concise for R users. 
  Also supporting multiple kinds of visualization with Ribo quality checking and 
  density tracks for genes.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
Imports: 
    Biostrings,
    cli,
    data.table,
    dplyr,
    GenomicAlignments,
    ggh4x,
    ggnewscale,
    ggplot2,
    ggpp,
    ggside,
    grid,
    gridExtra,
    IRanges,
    JuliaCall,
    magrittr,
    methods,
    parallel,
    plyr,
    purrr,
    R.utils,
    rentrez,
    reshape2,
    reticulate,
    rlang,
    rtracklayer,
    scales,
    utils,
    vroom,
    zplyr,
    tidyr,
    ggrepel,
    ggseqlogo,
    stringr,
    aplot,
    RiboSeqTools,
    stats,
    Matrix,
    tibble
Remotes:
  burchill/zplyr,
  jtlandis/ggside,
  ilia-kats/RiboSeqTools
biocViews: Rfastp,Rhisat2,Biostrings,rtracklayer,GenomicAlignments,IRanges,Rsamtools,Rsubread
Suggests: 
    Rhisat2,
    Rfastp,
    Rsamtools