-
Notifications
You must be signed in to change notification settings - Fork 9
/
VEBA-preprocess_env.yml
239 lines (239 loc) · 7.79 KB
/
VEBA-preprocess_env.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
name: VEBA-preprocess_env__v2023.12.12
channels:
- conda-forge
- bioconda
- jolespin
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- alsa-lib=1.2.7.2=h166bdaf_0
- argparse-manpage-birdtools=1.7.0=pyhd8ed1ab_0
- aria2=1.36.0=h1e4e653_3
- arrow-cpp=12.0.0=ha770c72_1_cpu
- aws-c-auth=0.6.26=h2c7c9e7_6
- aws-c-cal=0.5.26=h71eb795_0
- aws-c-common=0.8.17=hd590300_0
- aws-c-compression=0.2.16=h4f47f36_6
- aws-c-event-stream=0.2.20=h69ce273_6
- aws-c-http=0.7.7=h7b8353a_3
- aws-c-io=0.13.21=h2c99d58_4
- aws-c-mqtt=0.8.6=h3a1964a_15
- aws-c-s3=0.2.8=h0933b68_4
- aws-c-sdkutils=0.1.9=h4f47f36_1
- aws-checksums=0.1.14=h4f47f36_6
- aws-crt-cpp=0.19.9=h85076f6_5
- aws-sdk-cpp=1.10.57=hf40e4db_10
- awscli=1.27.23=py39hf3d152e_0
- bbmap=39.01=h5c4e2a8_0
- binutils_impl_linux-64=2.39=he00db2b_1
- bird_tool_utils_python=0.4.1=pyhdfd78af_0
- botocore=1.29.23=pyhd8ed1ab_0
- bowtie2=2.5.1=py39h3321a2d_0
- brotlipy=0.7.0=py39hb9d737c_1005
- bz2file=0.98=py_0
- bzip2=1.0.8=h7f98852_4
- c-ares=1.22.1=hd590300_0
- ca-certificates=2023.11.17=hbcca054_0
- cairo=1.16.0=ha61ee94_1014
- certifi=2023.11.17=pyhd8ed1ab_0
- cffi=1.15.1=py39he91dace_2
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- chopper=0.7.0=hdcf5f25_0
- clang=15.0.3=ha770c72_0
- clang-15=15.0.3=default_h2e3cab8_0
- colorama=0.4.4=pyh9f0ad1d_0
- coreutils=9.3=h0b41bf4_0
- cryptography=41.0.7=py39hd4f0224_0
- curl=8.4.0=hca28451_0
- docutils=0.16=py39hf3d152e_3
- expat=2.5.0=h27087fc_0
- extern=0.4.1=py_0
- fastp=0.23.4=h5f740d0_0
- fastq_preprocessor=2023.12.12=py_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.1=hc2a2eb6_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=hca18f0e_1
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- genopype=2023.5.15=py_0
- gettext=0.21.1=h27087fc_0
- gflags=2.2.2=he1b5a44_1004
- giflib=5.2.1=h36c2ea0_2
- glog=0.6.0=h6f12383_0
- graphite2=1.3.13=h58526e2_1001
- harfbuzz=5.3.0=h418a68e_0
- hdf5=1.14.2=nompi_h4f84152_100
- htslib=1.18=h81da01d_0
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- isa-l=2.30.0=ha770c72_4
- jmespath=1.0.1=pyhd8ed1ab_0
- jpeg=9e=h166bdaf_2
- k8=0.2.5=hdcf5f25_4
- kernel-headers_linux-64=2.6.32=he073ed8_16
- keyutils=1.6.1=h166bdaf_0
- kingfisher=0.1.0=pyh7cba7a3_1
- krb5=1.21.2=h659d440_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.39=hcc3a1bd_1
- lerc=4.0.0=h27087fc_0
- libabseil=20230125.0=cxx17_hcb278e6_1
- libaec=1.1.2=h59595ed_1
- libarrow=12.0.0=h1cdf7b0_1_cpu
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=16_linux64_openblas
- libclang-cpp15=15.0.3=default_h2e3cab8_0
- libcrc32c=1.1.2=h9c3ff4c_0
- libcups=2.3.3=h4637d8d_4
- libcurl=8.4.0=hca28451_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.12=hf998b51_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=13.2.0=h69a702a_0
- libgfortran5=13.2.0=ha4646dd_0
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libgoogle-cloud=2.10.0=hac9eb74_0
- libgrpc=1.54.2=hcf146ea_0
- libhwloc=2.8.0=h32351e8_1
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- libllvm15=15.0.3=h503ea73_0
- libnghttp2=1.58.0=h47da74e_0
- libnsl=2.0.0=h7f98852_0
- libnuma=2.0.16=h0b41bf4_1
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libprotobuf=3.21.12=hfc55251_2
- libsanitizer=12.2.0=h46fd767_19
- libsqlite=3.40.0=h753d276_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=12.2.0=h46fd767_19
- libthrift=0.18.1=h8fd135c_2
- libtiff=4.2.0=hf544144_3
- libutf8proc=2.8.0=h166bdaf_0
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.9.14=h22db469_4
- libzlib=1.2.13=h166bdaf_4
- lz4-c=1.9.3=h9c3ff4c_1
- minimap2=2.26=he4a0461_2
- ncbi-ngs-sdk=2.9.0=0
- ncbi-vdb=3.0.9=hdbdd923_0
- ncurses=6.3=h27087fc_1
- numpy=1.23.5=py39h3d75532_0
- openjdk=17.0.3=hea3dc9f_3
- openssl=3.2.0=hd590300_1
- orc=1.8.3=h2f23424_1
- ossuuid=1.6.2=hf484d3e_1000
- pandas=1.5.2=py39h4661b88_0
- parquet-cpp=1.5.1=2
- pathlib2=2.3.7.post1=py39hf3d152e_2
- pbzip2=1.1.13=0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=2_h7f98852_perl5
- perl-alien-build=2.48=pl5321hec16e2b_0
- perl-alien-libxml2=0.17=pl5321hec16e2b_0
- perl-business-isbn=3.007=pl5321hdfd78af_0
- perl-business-isbn-data=20210112.006=pl5321hdfd78af_0
- perl-capture-tiny=0.48=pl5321hdfd78af_2
- perl-carp=1.38=pl5321hdfd78af_4
- perl-constant=1.33=pl5321hdfd78af_2
- perl-data-dumper=2.183=pl5321hec16e2b_1
- perl-encode=3.19=pl5321hec16e2b_1
- perl-exporter=5.72=pl5321hdfd78af_2
- perl-extutils-makemaker=7.64=pl5321hd8ed1ab_0
- perl-ffi-checklib=0.28=pl5321hdfd78af_0
- perl-file-chdir=0.1010=pl5321hdfd78af_3
- perl-file-path=2.18=pl5321hd8ed1ab_0
- perl-file-temp=0.2304=pl5321hd8ed1ab_0
- perl-file-which=1.24=pl5321hd8ed1ab_0
- perl-importer=0.026=pl5321hdfd78af_0
- perl-mime-base64=3.16=pl5321hec16e2b_2
- perl-parent=0.236=pl5321hdfd78af_2
- perl-path-tiny=0.122=pl5321hdfd78af_0
- perl-pathtools=3.75=pl5321hec16e2b_3
- perl-scope-guard=0.21=pl5321hdfd78af_3
- perl-sub-info=0.002=pl5321hdfd78af_1
- perl-term-table=0.016=pl5321hdfd78af_0
- perl-test2-suite=0.000145=pl5321hdfd78af_0
- perl-uri=5.12=pl5321hdfd78af_0
- perl-xml-libxml=2.0207=pl5321h661654b_0
- perl-xml-namespacesupport=1.12=pl5321hdfd78af_1
- perl-xml-sax=1.02=pl5321hdfd78af_1
- perl-xml-sax-base=1.09=pl5321hdfd78af_1
- pigz=2.6=h27826a3_0
- pip=22.3.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pthread-stubs=0.4=h36c2ea0_1001
- pyarrow=12.0.0=py39he4327e9_1_cpu
- pyasn1=0.4.8=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pyopenssl=23.3.0=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.9.16=h2782a2a_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-tzdata=2022.7=pyhd8ed1ab_0
- python_abi=3.9=3_cp39
- pytz=2022.6=pyhd8ed1ab_0
- pytz-deprecation-shim=0.1.0.post0=py39hf3d152e_3
- pyyaml=5.4.1=py39hb9d737c_4
- rdma-core=28.9=h59595ed_1
- re2=2023.02.02=hcb278e6_0
- readline=8.1.2=h0f457ee_0
- requests=2.28.1=pyhd8ed1ab_1
- rsa=4.7.2=pyh44b312d_0
- s2n=1.3.44=h06160fa_0
- s3transfer=0.6.0=pyhd8ed1ab_0
- samtools=1.16.1=h6899075_1
- scandir=1.10.0=py39hb9d737c_6
- seqkit=2.3.1=h9ee0642_0
- setuptools=65.5.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.10=h9fff704_0
- soothsayer_utils=2022.6.24=py_0
- sra-tools=3.0.9=h9f5acd7_0
- sracat=0.2=h9f5acd7_1
- sysroot_linux-64=2.12=he073ed8_16
- tbb=2021.7.0=h924138e_1
- tk=8.6.12=h27826a3_0
- tqdm=4.64.1=pyhd8ed1ab_0
- tzdata=2022g=h191b570_0
- tzlocal=4.2=py39hf3d152e_2
- ucx=1.14.1=h64cca9d_5
- urllib3=1.26.13=pyhd8ed1ab_0
- wheel=0.38.4=pyhd8ed1ab_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.5=hfc55251_0