diff --git a/pathogenprofiler/fasta.py b/pathogenprofiler/fasta.py index 4645474..0fe1c0d 100644 --- a/pathogenprofiler/fasta.py +++ b/pathogenprofiler/fasta.py @@ -112,8 +112,8 @@ def get_target_qc(self,bed_file: str) -> List[TargetQC]: row = l.strip().split() results.append( TargetQC( - target = row[3], - percent_depth_pass=float(row[9]), + target = row[4], + percent_depth_pass=float(row[9])*100, median_depth=int(float(row[9])), ) )