pyproject.toml

[tool.poetry]
name = "seqinfer"
version = "0.1.dev1"
description = "A Python library for sequence inference."
authors = ["jjxiao <jiajiexiao@users.noreply.github.com>"]
license = "MIT"
readme = "README.md"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: MIT License",
    "Operating System :: OS Independent",
]

[tool.poetry.dependencies]
python = "^3.10"
torch = "^2.0.0"
biopython = "^1.81"
numpy = "^1.25.1"
scikit-learn = "^1.3.0"
lightning = "^2.0.6"

[tool.poetry.group.dev.dependencies]
black = "^23.3.0"
pytest = "^7.4.0"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

[tool.black]
line-length = 99 # override black's default line-length
exclude = '''
/(
    \.git
  | \.mypy_cache
  | \.tox
  | venv
  | \.venv
  | _build
  | buck-out
  | build
  | dist
)/
'''

[tool.isort]
# make it compatible with black
profile = "black"