From 34638202b7db8328c6cd021bbb430768f58f089d Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Fri, 16 Feb 2024 17:02:43 +1100
Subject: [PATCH 01/12] trying to make a binary package but not performing as
 well as before

---
 .github/workflows/r.yml            |    22 -
 DESCRIPTION                        |    12 -
 NAMESPACE                          |     5 -
 R/extendr-wrappers.R               |    17 -
 R/imputef.R                        |   224 -
 README.md                          |    62 +-
 man/aldknni.Rd                     |    97 -
 man/mvi.Rd                         |    75 -
 res/perf.R                         |     6 +-
 res/perf_functions.R               |    35 +-
 src/.gitignore                     |     5 -
 src/Makevars                       |    30 -
 src/Makevars.ucrt                  |     5 -
 src/Makevars.win                   |    40 -
 src/entrypoint.c                   |     8 -
 src/rust/Cargo.toml                |    23 -
 src/rust/src/aldknni.rs            |   977 -
 src/rust/src/filter_missing.rs     |   364 -
 src/rust/src/geno.rs               |   387 -
 src/rust/src/helpers.rs            |   257 -
 src/rust/src/lib.rs                |   360 -
 src/rust/src/mvi.rs                |   407 -
 src/rust/src/phen.rs               |   256 -
 src/rust/src/structs_and_traits.rs |   222 -
 src/rust/src/sync.rs               |  1580 -
 src/rust/src/vcf.rs                |   696 -
 src/rust/tests/test.csv            | 12669 ------
 src/rust/tests/test.pileup         | 64370 ---------------------------
 src/rust/tests/test.sync           |  6675 ---
 src/rust/tests/test.txt            |  6918 ---
 src/rust/tests/test.vcf            |   406 -
 src/rust/tests/test_pheno.csv      |     6 -
 tests/test.csv                     | 13424 +++++-
 tests/test.sync                    |  7052 ++-
 tests/test.vcf                     |     4 +-
 tests/tests.R                      |    48 -
 36 files changed, 19363 insertions(+), 98381 deletions(-)
 delete mode 100644 .github/workflows/r.yml
 delete mode 100644 DESCRIPTION
 delete mode 100644 NAMESPACE
 delete mode 100644 R/extendr-wrappers.R
 delete mode 100644 R/imputef.R
 delete mode 100644 man/aldknni.Rd
 delete mode 100644 man/mvi.Rd
 delete mode 100644 src/.gitignore
 delete mode 100644 src/Makevars
 delete mode 100644 src/Makevars.ucrt
 delete mode 100644 src/Makevars.win
 delete mode 100644 src/entrypoint.c
 delete mode 100644 src/rust/Cargo.toml
 delete mode 100644 src/rust/src/aldknni.rs
 delete mode 100644 src/rust/src/filter_missing.rs
 delete mode 100644 src/rust/src/geno.rs
 delete mode 100644 src/rust/src/helpers.rs
 delete mode 100644 src/rust/src/lib.rs
 delete mode 100644 src/rust/src/mvi.rs
 delete mode 100644 src/rust/src/phen.rs
 delete mode 100644 src/rust/src/structs_and_traits.rs
 delete mode 100644 src/rust/src/sync.rs
 delete mode 100644 src/rust/src/vcf.rs
 delete mode 100644 src/rust/tests/test.csv
 delete mode 100644 src/rust/tests/test.pileup
 delete mode 100644 src/rust/tests/test.sync
 delete mode 100644 src/rust/tests/test.txt
 delete mode 100644 src/rust/tests/test.vcf
 delete mode 100644 src/rust/tests/test_pheno.csv
 delete mode 100644 tests/tests.R

diff --git a/.github/workflows/r.yml b/.github/workflows/r.yml
deleted file mode 100644
index 190de9e..0000000
--- a/.github/workflows/r.yml
+++ /dev/null
@@ -1,22 +0,0 @@
-name: 🚀
-on:
-  push:
-    branches: [ "main", "dev" ]
-  pull_request:
-    branches: [ "main" ]
-jobs:
-  build:
-    runs-on: ubuntu-latest
-    steps:
-      - uses: actions/checkout@v3
-      - uses: r-lib/actions/setup-r@v2
-      - name: Install dependencies on Ubuntu
-        run: |
-          sudo apt install -y libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev
-      - name: Install dependencies
-        run: |
-          install.packages(c("devtools", "rextendr", "testthat"))
-        shell: Rscript {0}
-      - name: Tests
-        run: |
-          Rscript tests/tests.R
diff --git a/DESCRIPTION b/DESCRIPTION
deleted file mode 100644
index b4b1b59..0000000
--- a/DESCRIPTION
+++ /dev/null
@@ -1,12 +0,0 @@
-Package: imputef
-Title: Imputing allele frequencies for individual polyploid genotype data and pools of individuals or population genotype data
-Version: 0.0.1.0
-Authors@R: 
-    person("Jeff", "Paril", email="jeffersonparil@gmail.com", role=c("aut", "cre"),
-           comment = c(ORCID = "0000-0002-5693-4123"))
-Description: Imputation of genotype data from sequencing of more than 2 sets of genomes, i.e. polyploid individuals, population samples, or pools of individuals. This library can also perform simple genotype data filtering prior to imputation. Two imputation methods are available: (1) mean value imputation which uses the arithmentic mean of the locus across non-missing pools (`?imputef::mvi`); (2) adaptive linkage-informed k-nearest neighbour imputation (`?imputef::aldknni`). This is an attempt to extend the [LD-kNNi method of Money et al, 2015, i.e. LinkImpute](https://doi.org/10.1534/g3.115.021667), which was an extension of the [kNN imputation of Troyanskaya et al, 2001](https://doi.org/10.1093/bioinformatics/17.6.520). Similar to LD-kNNi, LD is estimated using Pearson's product moment correlation across loci per pair of samples. Mean absolute difference in allele frequencies is used to define genetic distance between samples, instead of taxicab or Manhattan distance in LD-kNNi. Four parameters can be set by the user, (1) minimum loci correlation threshold: dictates the minimum LD between the locus requiring imputation and other loci which will be used to estimate genetic distance between samples; (2) maximum genetic distance threshold: sets the maximum genetic distance between the sample requiring imputation and the samples (i.e. nearest neighbours) to be used in weighted mean imputation of missing allele frequencies; (3) minimum number of loci linked to the locus requiring imputation: overrides minimum loci correlation threshold if this minimum is not met; and (4) minimum k-nearest neighbours: overrides maximum genetic distance threshold if this minimum is not met. The first two parameters (minimum loci correlation and maximum genetic distance thresholds) can be optimised per locus requiring imputation using non-missing samples as replicates simulating missing data to minimum the mean absolute error in imputation.
-License: `use_gpl3_license()`
-Encoding: UTF-8
-Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
-Config/rextendr/version: 0.3.1
diff --git a/NAMESPACE b/NAMESPACE
deleted file mode 100644
index c0be8fa..0000000
--- a/NAMESPACE
+++ /dev/null
@@ -1,5 +0,0 @@
-# Generated by roxygen2: do not edit by hand
-
-export(aldknni)
-export(mvi)
-useDynLib(imputef, .registration = TRUE)
diff --git a/R/extendr-wrappers.R b/R/extendr-wrappers.R
deleted file mode 100644
index a358a12..0000000
--- a/R/extendr-wrappers.R
+++ /dev/null
@@ -1,17 +0,0 @@
-# Generated by extendr: Do not edit by hand
-
-# nolint start
-
-#
-# This file was created with the following call:
-#   .Call("wrap__make_imputef_wrappers", use_symbols = TRUE, package_name = "imputef")
-
-#' @docType package
-#' @usage NULL
-#' @useDynLib imputef, .registration = TRUE
-NULL
-
-impute <- function(fname, imputation_method, min_coverage, min_allele_frequency, max_missingness_rate_per_locus, pool_sizes, min_depth_below_which_are_missing, max_depth_above_which_are_missing, frac_top_missing_pools, frac_top_missing_loci, n_reps, min_loci_corr, max_pool_dist, min_l_loci, min_k_neighbours, restrict_linked_loci_per_chromosome, n_threads, fname_out_prefix) .Call(wrap__impute, fname, imputation_method, min_coverage, min_allele_frequency, max_missingness_rate_per_locus, pool_sizes, min_depth_below_which_are_missing, max_depth_above_which_are_missing, frac_top_missing_pools, frac_top_missing_loci, n_reps, min_loci_corr, max_pool_dist, min_l_loci, min_k_neighbours, restrict_linked_loci_per_chromosome, n_threads, fname_out_prefix)
-
-
-# nolint end
diff --git a/R/imputef.R b/R/imputef.R
deleted file mode 100644
index b35a777..0000000
--- a/R/imputef.R
+++ /dev/null
@@ -1,224 +0,0 @@
-#' @title
-#' mvi
-#' @description
-#' Mean value imputation of allele frequencies
-#' @usage
-#' mvi(fname, 
-#'        min_coverage=0,
-#'        min_allele_frequency=0.0001,
-#'        max_missingness_rate_per_locus=1.00,
-#'        pool_sizes=c(100),
-#'        min_depth_below_which_are_missing=1,
-#'        max_depth_above_which_are_missing=1000000,
-#'        frac_top_missing_pools=0.0,
-#'        frac_top_missing_loci=0.0,
-#'        n_threads=2,
-#'        fname_out_prefix="")
-#' @param fname
-#' name of the genotype file to be imputed in uncompressed vcf, sync or allele frequency table format. See genotype format details below.
-#' @param min_coverage
-#' minimum coverage per locus, i.e. if at a locus, a pool falls below this value (does not skip missing data, i.e. missing locus has a depth of zero), then the whole locus is omitted. Set this to zero if the vcf has been filtered and contains missing values, i.e. `./.` or `.|.`. [Default=0]
-#' @param min_allele_frequency
-#' minimum allele frequency per locus, i.e. if at a locus, a pool has all its alleles below this value and/or above the additive complement of this value (skipping missing data), then the entire locus is omitted. [Default=0.0001]
-#' @param max_missingness_rate_per_locus
-#' maximum fraction of pools missing per locus, i.e. if at a locus, there were more pools missing than the coverage dictated by this threshold, then the locus is omitted. [Default=1.00]
-#' @param pool_sizes
-#' vector of pool sizes, i.e. the number of individuals included in each pool, or can be set to an arbitrarily large value like 100 for individual polyploids or if allele frequency estimates are expected to be accurate. [Default=100]
-#' @param min_depth_below_which_are_missing
-#' minimum depth at which loci with depth below this threshold are set to missing. Set to one if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. [Default=1]
-#' @param max_depth_above_which_are_missing
-#' maximum depth at which loci with depth above this threshold are set to missing. Set to some large arbitrarily large value (e.g. 1000000) if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. [Default=1000000]
-#' @param frac_top_missing_pools
-#' fraction of pools with the highest number of missing loci to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to a decimal number between zero and one. [Default=0.0]
-#' @param frac_top_missing_loci
-#' fraction of loci with the highest number of pools with missing data to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an decimal number between zero and one. [Default=0.0]
-#' @param n_threads
-#' number of computing threads or processor cores to use in the computations. [Default=2]
-#' @param fname_out_prefix
-#' prefix of the output files including the [imputed allele frequency table](#allele-frequency-table-csv) (`<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv`). [Default="" which will use the name of the input file as the prefix including the path]
-#' @details
-#' This mean value imputation method simply uses the arithmetic mean of the allele frequencies across all non-missing samples to impute missing data.
-#' This function prints out the expected mean absolute error (MAE) of the imputation using 10% simulated missing data. Repeat the imputation manually to get a range of these MAEs for a better estimate of the expected MAE.
-#' The allele depth information (AD), i.e. the unfiltered allele depth which includes the reads which did not pass the variant caller filters are used to calculate allele frequencies. 
-#' Optional filtering steps based on minimum depth, minimum allele frequency, and maximum sparsity are available. 
-#' If the GT field is present but the AD field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool. 
-#' Genotype data are not imported into R, LD estimation and imputation per se are multi-threaded, and imputation output is written into disk as an allele frequency table. 
-#' The structs, traits, methods, and functions defined in this library are subsets of [poolgen](https://github.com/jeffersonfparil/poolgen), and will eventually be merged. 
-#' Genotype file formats:
-#' - vcf: canonical variant calling or genotype data format for individual samples. This should include the `AD` field (allele depth), and may or may not have genotypes called (e.g. generated via bctools mpileup -a AD,DP ...). If the `GT` field is present but the `AD` field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool. The [`vcf2sync`](#vcf2sync) utility is expected to work with vcf versions 4.2 and 4.3. See [VCFv4.2](https://samtools.github.io/hts-specs/VCFv4.2.pdf) and [VCFv4.3](https://samtools.github.io/hts-specs/VCFv4.3.pdf) for details in the format specifications.
-#' - sync: an extension of [popoolation2's](https://academic.oup.com/bioinformatics/article/27/24/3435/306737) sync or synchronised pileup file format, which includes a header line prepended by '#' showing the names of each column including the names of each pool. Additional header line/s and comments prepended with '#' may be added anywhere within the file.
-#'    + tab-delimited
-#'    + *Header line/s*:  optional header line/s including the names of the pools, e.g. `# chr pos ref pool1 pool2 pool3 pool4 pool5`
-#'    + *Column 1*:       chromosome or scaffold name
-#'    + *Column 2*:       locus position 
-#'    + *Column 3*:       reference allele, e.g. A, T, C, G 
-#'    + *Column/s 4 to n*:  colon-delimited allele counts: A:T:C:G:DEL:N, where "DEL" refers to insertion/deletion, and "N" is unclassified. A pool or population or polyploid individual is represented by a single column of this colon-delimited allele counts.
-#' - allele frequency table
-#'    + comma-delimited
-#'    + *Header line*: ` #chr,pos,allele,<pool_name_1>,...,<pool_name_n>`
-#'    + each locus is represented by 2 or more rows, i.e. 2 for biallelic loci, and >2 for multi-allelic loci
-#' @returns 
-#' imputed allele frequency table with the following filename: `<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv`. Additionally, a sync file is generated if the input was an uncompressed vcf.
-#' @export
-mvi = function(fname, 
-                min_coverage=0,
-                min_allele_frequency=0.0001,
-                max_missingness_rate_per_locus=1.00,
-                pool_sizes=c(100),
-                min_depth_below_which_are_missing=1,
-                max_depth_above_which_are_missing=1000000,
-                frac_top_missing_pools=0.0,
-                frac_top_missing_loci=0.0,
-                n_threads=2,
-                fname_out_prefix="") {
-    out = impute(fname=fname,
-        imputation_method="mean",
-        min_coverage=min_coverage,
-        min_allele_frequency=min_allele_frequency,
-        max_missingness_rate_per_locus=max_missingness_rate_per_locus,
-        pool_sizes=pool_sizes,
-        min_depth_below_which_are_missing=min_depth_below_which_are_missing,
-        max_depth_above_which_are_missing=max_depth_above_which_are_missing,
-        frac_top_missing_pools=frac_top_missing_pools,
-        frac_top_missing_loci=frac_top_missing_loci,
-        min_loci_corr=0,
-        max_pool_dist=0,
-        min_l_loci=0,
-        min_k_neighbours=0,
-        restrict_linked_loci_per_chromosome=FALSE,
-        n_reps=0,
-        n_threads=n_threads,
-        fname_out_prefix=fname_out_prefix)
-    return(out)
-}
-
-#' @title
-#' aldknni
-#' @description
-#' Adaptive linkage-informed k-nearest neighbour imputation of allele frequencies
-#' @usage
-#' aldknni(fname, 
-#'         min_coverage=0,
-#'         min_allele_frequency=0.0001,
-#'         max_missingness_rate_per_locus=1.00,
-#'         pool_sizes=c(100),
-#'         min_depth_below_which_are_missing=1,
-#'         max_depth_above_which_are_missing=1000000,
-#'         frac_top_missing_pools=0.0,
-#'         frac_top_missing_loci=0.0,
-#'         min_loci_corr=0.9,
-#'         max_pool_dist=0.1,
-#'         min_l_loci=1,
-#'         min_k_neighbours=1,
-#'         restrict_linked_loci_per_chromosome=TRUE,
-#'         n_reps=20,
-#'         n_threads=2,
-#'         fname_out_prefix="")
-#' @param fname
-#' name of the genotype file to be imputed in uncompressed vcf, sync or allele frequency table format. See genotype format details below.
-#' @param min_coverage
-#' minimum coverage per locus, i.e. if at a locus, a pool falls below this value (does not skip missing data, i.e. missing locus has a depth of zero), then the whole locus is omitted. Set this to zero if the vcf has been filtered and contains missing values, i.e. `./.` or `.|.`. [Default=0]
-#' @param min_allele_frequency
-#' minimum allele frequency per locus, i.e. if at a locus, a pool has all its alleles below this value and/or above the additive complement of this value (skipping missing data), then the entire locus is omitted. [Default=0.0001]
-#' @param max_missingness_rate_per_locus
-#' maximum fraction of pools missing per locus, i.e. if at a locus, there were more pools missing than the coverage dictated by this threshold, then the locus is omitted. [Default=1.00]
-#' @param pool_sizes
-#' vector of pool sizes, i.e. the number of individuals included in each pool, or can be set to an arbitrarily large value like 100 for individual polyploids or if allele frequency estimates are expected to be accurate. [Default=100]
-#' @param min_depth_below_which_are_missing
-#' minimum depth at which loci with depth below this threshold are set to missing. Set to one if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. [Default=1]
-#' @param max_depth_above_which_are_missing
-#' maximum depth at which loci with depth above this threshold are set to missing. Set to some large arbitrarily large value (e.g. 1000000) if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. [Default=1000000]
-#' @param frac_top_missing_pools
-#' fraction of pools with the highest number of missing loci to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to a decimal number between zero and one. [Default=0.0]
-#' @param frac_top_missing_loci
-#' fraction of loci with the highest number of pools with missing data to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an decimal number between zero and one. [Default=0.0]
-#' @param min_loci_corr
-#' Minimum correlation (Pearson's correlation) between the locus requiring imputation and other loci deemed to be in linkage with it. Ranges from 0.0 to 1.0. If using the default value with is NA, then this threshold will be optimised to find the best value minimising imputation error. [Default=0.9]
-#' @param max_pool_dist
-#' Maximum genetic distance (mean absolute difference in allele frequencies) between the pool or sample requiring imputation and pools or samples deemed to be the closest neighbours. Ranges from 0.0 to 1.0. If using the default value with is NA, then this threshold will be optimised to find the best value minimising imputation error. [Default=0.1]
-#' @param min_l_loci
-#' Minimum number of linked loci to be used in estimating genetic distances between the pool or sample requiring imputation and other pools or samples. Minimum value of 1. [Default=20]
-#' @param min_k_neighbours
-#' Minimum number of k-nearest neighbours of the pool or sample requiring imputation. Minimum value of 1. [Default=5]
-#' @param restrict_linked_loci_per_chromosome
-#' Restrict the choice of linked loci to within the chromosome the locus requiring imputation belong to? [Default=TRUE]
-#' @param n_reps
-#' Number of replications for the optimisation for the minimum loci correlation, and/or maximum genetic distance. Minimum value of 1. [Default=20]
-#' @param n_threads
-#' number of computing threads or processor cores to use in the computations. [Default=2]
-#' @param fname_out_prefix
-#' prefix of the output files including the [imputed allele frequency table](#allele-frequency-table-csv) (`<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv`). [Default="" which will use the name of the input file as the prefix including the path]
-#' @details
-#' This is an attempt to extend the [LD-kNNi method of Money et al, 2015, i.e. LinkImpute](https://doi.org/10.1534/g3.115.021667), which was an extension of the [kNN imputation of Troyanskaya et al, 2001](https://doi.org/10.1093/bioinformatics/17.6.520). 
-#' Similar to LD-kNNi, linkage disequilibrium (LD) is estimated using Pearson's product moment correlation per pair of loci, which is computed per chromosome by default, but can be computed across the entire genome. 
-#' We use the mean absolute difference/error (MAE) between allele frequencies among linked loci as an estimate of genetic distance between samples. 
-#' Fixed values for the minimum correlation to identify loci used in distance estimation, and maximum genetic distance to select the k-nearest neighbours can be defined. 
-#' Additionally, minimum number of loci to include in distance estimation, and minimum number of nearest neighbours can be set. 
-#' Moreover, all four parameters can be optimised, i.e. the minimum correlation and/or maximum distance and/or minimum number of loci and/or minimum number of nearest neighbours which minimises the MAE between predicted and expected allele frequencies after simulating 10% missing data are identified.
-#' The allele depth information (AD), i.e. the unfiltered allele depth which includes the reads which did not pass the variant caller filters are used to calculate allele frequencies. 
-#' If the GT field is present but the AD field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool. 
-#' Optional filtering steps based on minimum depth, minimum allele frequency, and maximum sparsity are available. 
-#' Genotype data are not imported into R, LD estimation and imputation per se are multi-threaded, and imputation output is written into disk as an allele frequency table. 
-#' The structs, traits, methods, and functions defined in this library are subsets of [poolgen](https://github.com/jeffersonfparil/poolgen), and will eventually be merged. 
-#' Genotype file formats:
-#' - vcf: canonical variant calling or genotype data format for individual samples. This should include the `AD` field (allele depth), and may or may not have genotypes called (e.g. generated via bctools mpileup -a AD,DP ...). If the `GT` field is present but the `AD` field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool. The [`vcf2sync`](#vcf2sync) utility is expected to work with vcf versions 4.2 and 4.3. See [VCFv4.2](https://samtools.github.io/hts-specs/VCFv4.2.pdf) and [VCFv4.3](https://samtools.github.io/hts-specs/VCFv4.3.pdf) for details in the format specifications.
-#' - sync: an extension of [popoolation2's](https://academic.oup.com/bioinformatics/article/27/24/3435/306737) sync or synchronised pileup file format, which includes a header line prepended by '#' showing the names of each column including the names of each pool. Additional header line/s and comments prepended with '#' may be added anywhere within the file.
-#'    + tab-delimited
-#'    + *Header line/s*:  optional header line/s including the names of the pools, e.g. `# chr pos ref pool1 pool2 pool3 pool4 pool5`
-#'    + *Column 1*:       chromosome or scaffold name
-#'    + *Column 2*:       locus position 
-#'    + *Column 3*:       reference allele, e.g. A, T, C, G 
-#'    + *Column/s 4 to n*:  colon-delimited allele counts: A:T:C:G:DEL:N, where "DEL" refers to insertion/deletion, and "N" is unclassified. A pool or population or polyploid individual is represented by a single column of this colon-delimited allele counts.
-#' - allele frequency table
-#'    + comma-delimited
-#'    + *Header line*: ` #chr,pos,allele,<pool_name_1>,...,<pool_name_n>`
-#'    + each locus is represented by 2 or more rows, i.e. 2 for biallelic loci, and >2 for multi-allelic loci
-#' @returns 
-#' imputed allele frequency table with the following filename: `<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv`. Additionally, a sync file is generated if the input was an uncompressed vcf.
-
-
-#' @export
-aldknni = function(fname, 
-                    min_coverage=0,
-                    min_allele_frequency=0.0001,
-                    max_missingness_rate_per_locus=1.00,
-                    pool_sizes=c(100),
-                    min_depth_below_which_are_missing=1,
-                    max_depth_above_which_are_missing=1000000,
-                    frac_top_missing_pools=0.0,
-                    frac_top_missing_loci=0.0,
-                    min_loci_corr=0.9,
-                    max_pool_dist=0.1,
-                    min_l_loci=20,
-                    min_k_neighbours=5,
-                    restrict_linked_loci_per_chromosome=TRUE,
-                    n_reps=20,
-                    n_threads=2,
-                    fname_out_prefix="") {
-    ### Handling NA conversion into Rust's f64:NAN
-    if (is.na(min_loci_corr)) {
-        min_loci_corr = -1.0
-    }
-    if (is.na(max_pool_dist)) {
-        max_pool_dist = -1.0
-    }
-    out = impute(fname=fname,
-        imputation_method="aLDkNNi",
-        min_coverage=min_coverage,
-        min_allele_frequency=min_allele_frequency,
-        max_missingness_rate_per_locus=max_missingness_rate_per_locus,
-        pool_sizes=pool_sizes,
-        min_depth_below_which_are_missing=min_depth_below_which_are_missing,
-        max_depth_above_which_are_missing=max_depth_above_which_are_missing,
-        frac_top_missing_pools=frac_top_missing_pools,
-        frac_top_missing_loci=frac_top_missing_loci,
-        min_loci_corr=min_loci_corr,
-        max_pool_dist=max_pool_dist,
-        min_l_loci=min_l_loci,
-        min_k_neighbours=min_k_neighbours,
-        restrict_linked_loci_per_chromosome=restrict_linked_loci_per_chromosome,
-        n_reps=n_reps,
-        n_threads=n_threads,
-        fname_out_prefix=fname_out_prefix)
-    return(out)
-}
diff --git a/README.md b/README.md
index 02712b8..b024199 100644
--- a/README.md
+++ b/README.md
@@ -1,64 +1,20 @@
 # imputef
 
-Impute allele frequencies to reduce sparsity of genotype data from polyploids, pooled individuals, and populations. This is an [R](https://www.r-project.org/) package written in [Rust](https://www.rust-lang.org/).
+Impute allele frequencies to reduce sparsity of genotype data from polyploids, pooled individuals, and populations.
 
 |**Build Status**|**License**|
 |:--------------:|:---------:|
-| <a href="https://github.com/jeffersonfparil/imputef/actions"><img src="https://github.com/jeffersonfparil/imputef/actions/workflows/r.yml/badge.svg"></a> | [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0) |
+| <a href="https://github.com/jeffersonfparil/imputef/actions"><img src="https://github.com/jeffersonfparil/imputef/actions/workflows/rust.yml/badge.svg"></a> | [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0) |
 
 ## Installation
 
-### For Developers
-
-1. Install conda
-
-```shell
-wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
-sh ./Miniconda3-latest-Linux-x86_64.sh
-```
-
-2. Download the repository and load the development environment
-
 ```shell
-git clone https://jeffersonfparil:<API_KEY>@github.com/jeffersonfparil/imputef.git main
-cd imputef/
-conda env create --file res/rustenv.yml
-conda activate rustenv
+cargo build --release
+target/release/imputef -h
 ```
-3. Install the [rextender package](https://github.com/extendr/rextendr) in R: `install.packages("rextendr")`
-
-4. Load or install the local copy of imputef in R
-
-```R
-### Note make sure that you are in the imputef/, e.g. `getwd()`, and the rustenv Conda environment is activated
-### Load the package without installing
-rextendr::document()
-devtools::load_all()
-### Install the package
-devtools::install(pkg=".")
-```
-
-### For Users
-
-1. Install Rust:
-    - Option 1 - via conda: 
-        + [Install conda](https://conda.io/projects/conda/en/latest/user-guide/install/index.html)
-        + Create a Rust environment: `conda create -c conda-forge -n rustenv rust`
-        + Activate the environment: `conda activate rustenv`
-    - Option 2 - [install rustup](https://www.rust-lang.org/tools/install)
-2. Install the [rextender package](https://github.com/extendr/rextendr) in R: `install.packages("rextendr")`
-3. Install the imputef package in R:
-    - Prior to publication in [CRAN](https://cran.r-project.org/): `credentials::set_github_pat()` then enter your access token, and install: `remotes::install_github("jeffersonfparil/imputef")`
-    - Once published and after all the checks and manual quality control from the good people at CRAN: `install.packages("imputef")`
 
 ## Usage
 
-```R
-?imputef::mvi
-?imputef::aldknni
-imputef::mvi(fname="tests/test.vcf")
-imputef::aldknni(fname="tests/test.vcf")
-```
 
 ### Functions
 
@@ -71,16 +27,6 @@ imputef::aldknni(fname="tests/test.vcf")
 Shared by both functions:
 
 - **fname**: name of the genotype file to be imputed in uncompressed [vcf](#variant-call-format-vcf), [sync](#synchronised-pileup-sync), or [allele frequency table](#allele-frequency-table-csv). Details on these genotype formats are available below.
-- **min_coverage**: minimum coverage per locus, i.e. if at a locus, a pool falls below this value (does not skip missing data, i.e. missing locus has a depth of zero), then the whole locus is omitted. Set this to zero if the vcf has been filtered and contains missing values, i.e. `./.` or `.|.`. [Default=0]
-- **min_allele_frequency**: minimum allele frequency per locus, i.e. if at a locus, a pool has all its alleles below this value and/or above the additive complement of this value (skipping missing data), then the entire locus is omitted. [Default=0.0001]
-- **max_missingness_rate_per_locus**: maximum fraction of pools missing per locus, i.e. if at a locus, there were more pools missing than the coverage dictated by this threshold, then the locus is omitted. [Default=1.00]
-- **pool_sizes**: vector of pool sizes, i.e. the number of individuals included in each pool, or can be set to an arbitrarily large value like 100 for individual polyploids or if allele frequency estimates are expected to be accurate. [Default=100]
-- **min_depth_below_which_are_missing**: minimum depth at which loci with depth below this threshold are set to missing. Set to one if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. [Default=1]
-- **max_depth_above_which_are_missing**: maximum depth at which loci with depth above this threshold are set to missing. Set to some large arbitrarily large value (e.g. 1000000) if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. [Default=1000000]
-- **frac_top_missing_pools**: fraction of pools with the highest number of missing loci to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to a decimal number between zero and one. [Default=0.0]
-- **frac_top_missing_loci**: fraction of loci with the highest number of pools with missing data to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an decimal number between zero and one. [Default=0.0]
-- **n_threads**: number of computing threads or processor cores to use in the computations. [Default=2]
-- **fname_out_prefix**: prefix of the output files including the [imputed allele frequency table](#allele-frequency-table-csv) (`<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv`). [Default="" which will use the name of the input file as the prefix including the path]
 
 Exclusive to `aldknni`:
 
diff --git a/man/aldknni.Rd b/man/aldknni.Rd
deleted file mode 100644
index d264672..0000000
--- a/man/aldknni.Rd
+++ /dev/null
@@ -1,97 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/imputef.R
-\name{aldknni}
-\alias{aldknni}
-\title{aldknni}
-\usage{
-aldknni(fname, 
-        min_coverage=0,
-        min_allele_frequency=0.0001,
-        max_missingness_rate_per_locus=1.00,
-        pool_sizes=c(100),
-        min_depth_below_which_are_missing=1,
-        max_depth_above_which_are_missing=1000000,
-        frac_top_missing_pools=0.0,
-        frac_top_missing_loci=0.0,
-        min_loci_corr=0.9,
-        max_pool_dist=0.1,
-        min_l_loci=1,
-        min_k_neighbours=1,
-        restrict_linked_loci_per_chromosome=TRUE,
-        n_reps=20,
-        n_threads=2,
-        fname_out_prefix="")
-}
-\arguments{
-\item{fname}{name of the genotype file to be imputed in uncompressed vcf, sync or allele frequency table format. See genotype format details below.}
-
-\item{min_coverage}{minimum coverage per locus, i.e. if at a locus, a pool falls below this value (does not skip missing data, i.e. missing locus has a depth of zero), then the whole locus is omitted. Set this to zero if the vcf has been filtered and contains missing values, i.e. \code{./.} or \code{.|.}. \link{Default=0}}
-
-\item{min_allele_frequency}{minimum allele frequency per locus, i.e. if at a locus, a pool has all its alleles below this value and/or above the additive complement of this value (skipping missing data), then the entire locus is omitted. \link{Default=0.0001}}
-
-\item{max_missingness_rate_per_locus}{maximum fraction of pools missing per locus, i.e. if at a locus, there were more pools missing than the coverage dictated by this threshold, then the locus is omitted. \link{Default=1.00}}
-
-\item{pool_sizes}{vector of pool sizes, i.e. the number of individuals included in each pool, or can be set to an arbitrarily large value like 100 for individual polyploids or if allele frequency estimates are expected to be accurate. \link{Default=100}}
-
-\item{min_depth_below_which_are_missing}{minimum depth at which loci with depth below this threshold are set to missing. Set to one if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. \link{Default=1}}
-
-\item{max_depth_above_which_are_missing}{maximum depth at which loci with depth above this threshold are set to missing. Set to some large arbitrarily large value (e.g. 1000000) if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. \link{Default=1000000}}
-
-\item{frac_top_missing_pools}{fraction of pools with the highest number of missing loci to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to a decimal number between zero and one. \link{Default=0.0}}
-
-\item{frac_top_missing_loci}{fraction of loci with the highest number of pools with missing data to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an decimal number between zero and one. \link{Default=0.0}}
-
-\item{min_loci_corr}{Minimum correlation (Pearson's correlation) between the locus requiring imputation and other loci deemed to be in linkage with it. Ranges from 0.0 to 1.0. If using the default value with is NA, then this threshold will be optimised to find the best value minimising imputation error. \link{Default=0.9}}
-
-\item{max_pool_dist}{Maximum genetic distance (mean absolute difference in allele frequencies) between the pool or sample requiring imputation and pools or samples deemed to be the closest neighbours. Ranges from 0.0 to 1.0. If using the default value with is NA, then this threshold will be optimised to find the best value minimising imputation error. \link{Default=0.1}}
-
-\item{min_l_loci}{Minimum number of linked loci to be used in estimating genetic distances between the pool or sample requiring imputation and other pools or samples. Minimum value of 1. \link{Default=20}}
-
-\item{min_k_neighbours}{Minimum number of k-nearest neighbours of the pool or sample requiring imputation. Minimum value of 1. \link{Default=5}}
-
-\item{restrict_linked_loci_per_chromosome}{Restrict the choice of linked loci to within the chromosome the locus requiring imputation belong to? \link{Default=TRUE}}
-
-\item{n_reps}{Number of replications for the optimisation for the minimum loci correlation, and/or maximum genetic distance. Minimum value of 1. \link{Default=20}}
-
-\item{n_threads}{number of computing threads or processor cores to use in the computations. \link{Default=2}}
-
-\item{fname_out_prefix}{prefix of the output files including the \href{#allele-frequency-table-csv}{imputed allele frequency table} (\verb{<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv}). \link{Default="" which will use the name of the input file as the prefix including the path}}
-}
-\value{
-imputed allele frequency table with the following filename: \verb{<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv}. Additionally, a sync file is generated if the input was an uncompressed vcf.
-}
-\description{
-Adaptive linkage-informed k-nearest neighbour imputation of allele frequencies
-}
-\details{
-This is an attempt to extend the \href{https://doi.org/10.1534/g3.115.021667}{LD-kNNi method of Money et al, 2015, i.e. LinkImpute}, which was an extension of the \href{https://doi.org/10.1093/bioinformatics/17.6.520}{kNN imputation of Troyanskaya et al, 2001}.
-Similar to LD-kNNi, linkage disequilibrium (LD) is estimated using Pearson's product moment correlation per pair of loci, which is computed per chromosome by default, but can be computed across the entire genome.
-We use the mean absolute difference/error (MAE) between allele frequencies among linked loci as an estimate of genetic distance between samples.
-Fixed values for the minimum correlation to identify loci used in distance estimation, and maximum genetic distance to select the k-nearest neighbours can be defined.
-Additionally, minimum number of loci to include in distance estimation, and minimum number of nearest neighbours can be set.
-Moreover, all four parameters can be optimised, i.e. the minimum correlation and/or maximum distance and/or minimum number of loci and/or minimum number of nearest neighbours which minimises the MAE between predicted and expected allele frequencies after simulating 10\% missing data are identified.
-The allele depth information (AD), i.e. the unfiltered allele depth which includes the reads which did not pass the variant caller filters are used to calculate allele frequencies.
-If the GT field is present but the AD field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool.
-Optional filtering steps based on minimum depth, minimum allele frequency, and maximum sparsity are available.
-Genotype data are not imported into R, LD estimation and imputation per se are multi-threaded, and imputation output is written into disk as an allele frequency table.
-The structs, traits, methods, and functions defined in this library are subsets of \href{https://github.com/jeffersonfparil/poolgen}{poolgen}, and will eventually be merged.
-Genotype file formats:
-\itemize{
-\item vcf: canonical variant calling or genotype data format for individual samples. This should include the \code{AD} field (allele depth), and may or may not have genotypes called (e.g. generated via bctools mpileup -a AD,DP ...). If the \code{GT} field is present but the \code{AD} field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool. The \href{#vcf2sync}{\code{vcf2sync}} utility is expected to work with vcf versions 4.2 and 4.3. See \href{https://samtools.github.io/hts-specs/VCFv4.2.pdf}{VCFv4.2} and \href{https://samtools.github.io/hts-specs/VCFv4.3.pdf}{VCFv4.3} for details in the format specifications.
-\item sync: an extension of \href{https://academic.oup.com/bioinformatics/article/27/24/3435/306737}{popoolation2's} sync or synchronised pileup file format, which includes a header line prepended by '#' showing the names of each column including the names of each pool. Additional header line/s and comments prepended with '#' may be added anywhere within the file.
-\itemize{
-\item tab-delimited
-\item \emph{Header line/s}:  optional header line/s including the names of the pools, e.g. \verb{# chr pos ref pool1 pool2 pool3 pool4 pool5}
-\item \emph{Column 1}:       chromosome or scaffold name
-\item \emph{Column 2}:       locus position
-\item \emph{Column 3}:       reference allele, e.g. A, T, C, G
-\item \emph{Column/s 4 to n}:  colon-delimited allele counts: A:T:C:G:DEL:N, where "DEL" refers to insertion/deletion, and "N" is unclassified. A pool or population or polyploid individual is represented by a single column of this colon-delimited allele counts.
-}
-\item allele frequency table
-\itemize{
-\item comma-delimited
-\item \emph{Header line}: \verb{ #chr,pos,allele,<pool_name_1>,...,<pool_name_n>}
-\item each locus is represented by 2 or more rows, i.e. 2 for biallelic loci, and >2 for multi-allelic loci
-}
-}
-}
diff --git a/man/mvi.Rd b/man/mvi.Rd
deleted file mode 100644
index 35ab8ad..0000000
--- a/man/mvi.Rd
+++ /dev/null
@@ -1,75 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/imputef.R
-\name{mvi}
-\alias{mvi}
-\title{mvi}
-\usage{
-mvi(fname, 
-       min_coverage=0,
-       min_allele_frequency=0.0001,
-       max_missingness_rate_per_locus=1.00,
-       pool_sizes=c(100),
-       min_depth_below_which_are_missing=1,
-       max_depth_above_which_are_missing=1000000,
-       frac_top_missing_pools=0.0,
-       frac_top_missing_loci=0.0,
-       n_threads=2,
-       fname_out_prefix="")
-}
-\arguments{
-\item{fname}{name of the genotype file to be imputed in uncompressed vcf, sync or allele frequency table format. See genotype format details below.}
-
-\item{min_coverage}{minimum coverage per locus, i.e. if at a locus, a pool falls below this value (does not skip missing data, i.e. missing locus has a depth of zero), then the whole locus is omitted. Set this to zero if the vcf has been filtered and contains missing values, i.e. \code{./.} or \code{.|.}. \link{Default=0}}
-
-\item{min_allele_frequency}{minimum allele frequency per locus, i.e. if at a locus, a pool has all its alleles below this value and/or above the additive complement of this value (skipping missing data), then the entire locus is omitted. \link{Default=0.0001}}
-
-\item{max_missingness_rate_per_locus}{maximum fraction of pools missing per locus, i.e. if at a locus, there were more pools missing than the coverage dictated by this threshold, then the locus is omitted. \link{Default=1.00}}
-
-\item{pool_sizes}{vector of pool sizes, i.e. the number of individuals included in each pool, or can be set to an arbitrarily large value like 100 for individual polyploids or if allele frequency estimates are expected to be accurate. \link{Default=100}}
-
-\item{min_depth_below_which_are_missing}{minimum depth at which loci with depth below this threshold are set to missing. Set to one if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. \link{Default=1}}
-
-\item{max_depth_above_which_are_missing}{maximum depth at which loci with depth above this threshold are set to missing. Set to some large arbitrarily large value (e.g. 1000000) if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero. \link{Default=1000000}}
-
-\item{frac_top_missing_pools}{fraction of pools with the highest number of missing loci to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to a decimal number between zero and one. \link{Default=0.0}}
-
-\item{frac_top_missing_loci}{fraction of loci with the highest number of pools with missing data to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an decimal number between zero and one. \link{Default=0.0}}
-
-\item{n_threads}{number of computing threads or processor cores to use in the computations. \link{Default=2}}
-
-\item{fname_out_prefix}{prefix of the output files including the \href{#allele-frequency-table-csv}{imputed allele frequency table} (\verb{<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv}). \link{Default="" which will use the name of the input file as the prefix including the path}}
-}
-\value{
-imputed allele frequency table with the following filename: \verb{<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv}. Additionally, a sync file is generated if the input was an uncompressed vcf.
-}
-\description{
-Mean value imputation of allele frequencies
-}
-\details{
-This mean value imputation method simply uses the arithmetic mean of the allele frequencies across all non-missing samples to impute missing data.
-This function prints out the expected mean absolute error (MAE) of the imputation using 10\% simulated missing data. Repeat the imputation manually to get a range of these MAEs for a better estimate of the expected MAE.
-The allele depth information (AD), i.e. the unfiltered allele depth which includes the reads which did not pass the variant caller filters are used to calculate allele frequencies.
-Optional filtering steps based on minimum depth, minimum allele frequency, and maximum sparsity are available.
-If the GT field is present but the AD field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool.
-Genotype data are not imported into R, LD estimation and imputation per se are multi-threaded, and imputation output is written into disk as an allele frequency table.
-The structs, traits, methods, and functions defined in this library are subsets of \href{https://github.com/jeffersonfparil/poolgen}{poolgen}, and will eventually be merged.
-Genotype file formats:
-\itemize{
-\item vcf: canonical variant calling or genotype data format for individual samples. This should include the \code{AD} field (allele depth), and may or may not have genotypes called (e.g. generated via bctools mpileup -a AD,DP ...). If the \code{GT} field is present but the \code{AD} field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool. The \href{#vcf2sync}{\code{vcf2sync}} utility is expected to work with vcf versions 4.2 and 4.3. See \href{https://samtools.github.io/hts-specs/VCFv4.2.pdf}{VCFv4.2} and \href{https://samtools.github.io/hts-specs/VCFv4.3.pdf}{VCFv4.3} for details in the format specifications.
-\item sync: an extension of \href{https://academic.oup.com/bioinformatics/article/27/24/3435/306737}{popoolation2's} sync or synchronised pileup file format, which includes a header line prepended by '#' showing the names of each column including the names of each pool. Additional header line/s and comments prepended with '#' may be added anywhere within the file.
-\itemize{
-\item tab-delimited
-\item \emph{Header line/s}:  optional header line/s including the names of the pools, e.g. \verb{# chr pos ref pool1 pool2 pool3 pool4 pool5}
-\item \emph{Column 1}:       chromosome or scaffold name
-\item \emph{Column 2}:       locus position
-\item \emph{Column 3}:       reference allele, e.g. A, T, C, G
-\item \emph{Column/s 4 to n}:  colon-delimited allele counts: A:T:C:G:DEL:N, where "DEL" refers to insertion/deletion, and "N" is unclassified. A pool or population or polyploid individual is represented by a single column of this colon-delimited allele counts.
-}
-\item allele frequency table
-\itemize{
-\item comma-delimited
-\item \emph{Header line}: \verb{ #chr,pos,allele,<pool_name_1>,...,<pool_name_n>}
-\item each locus is represented by 2 or more rows, i.e. 2 for biallelic loci, and >2 for multi-allelic loci
-}
-}
-}
diff --git a/res/perf.R b/res/perf.R
index f693d04..69b1e02 100644
--- a/res/perf.R
+++ b/res/perf.R
@@ -1,7 +1,7 @@
 ### Parse Rscript arguments
 args = commandArgs(trailingOnly=TRUE)
-# args = c("1", "/group/pasture/Jeff/imputef/res", "/group/pasture/Jeff/imputef/misc", "3", "32")
-# args = c("1", "/home/jeff/imputef/res", "/home/jeff/imputef/res", "3", "32")
+# args = c("1", "/group/pasture/Jeff/imputef", "/group/pasture/Jeff/imputef/misc", "3", "32")
+# args = c("1", "/home/jeff/imputef", "/home/jeff/imputef/res", "3", "32")
 i = as.numeric(args[1])
 dir_src = args[2]
 dir_data = args[3]
@@ -9,7 +9,7 @@ n_reps = as.numeric(args[4])
 n_threads = as.numeric(args[5])
 
 ### Load functions
-source(paste0(dir_src, "/perf_functions.R"))
+source(paste0(dir_src, "/res/perf_functions.R"))
 
 ### Define variable combinations
 df_variables = expand.grid(dataset=c("grape", "lucerne", "soybean"), 
diff --git a/res/perf_functions.R b/res/perf_functions.R
index dab4728..9335103 100644
--- a/res/perf_functions.R
+++ b/res/perf_functions.R
@@ -1,10 +1,6 @@
 ### Load imputef library
-# dir_src = "/group/pasture/Jeff/imputef/res"
-library(imputef)
-# system("conda activate rustenv")
-# devtools::load_all()
-# rextendr::document()
-
+# dir_src = "/group/pasture/Jeff/imputef"
+# dir_src = "/home/jeff/imputef"
 
 ### Extract allele frequencies into a pxn matrix where we have p loci and n entries
 ### Assumes all loci have a maximum of 2 alleles
@@ -296,15 +292,15 @@ fn_imputation_accuracy = function(fname_imputed, list_sim_missing, mat_idx_high_
 
 ### Performance assessment function
 fn_test_imputation = function(vcf, mat_genotypes, mat_idx_high_conf_data, ploidy=4, maf=0.25, missing_rate=0.5, strict_boundaries=FALSE, n_threads=10) {
-    # vcf = vcfR::read.vcfR("test-lucerne.vcf") ### 154 pools X 124,151 loci
+    # vcf = vcfR::read.vcfR(file.path(dir_src, "res/grape.vcf"))
     # list_genotypes = fn_extract_allele_frequencies(vcf)
     # mat_genotypes = list_genotypes$mat_genotypes
     # mat_idx_high_conf_data = list_genotypes$mat_idx_high_conf_data
-    # maf = 0.25
-    # missing_rate = 0.5
+    # maf = 0.01
+    # missing_rate = 0.1
     # strict_boundaries = FALSE
     # n_threads = 32
-    ### Simulate missing data
+    ## Simulate missing data
     list_sim_missing = fn_simulate_missing_data(vcf=vcf,
                                                 mat_genotypes=mat_genotypes,
                                                 maf=maf,
@@ -320,25 +316,15 @@ fn_test_imputation = function(vcf, mat_genotypes, mat_idx_high_conf_data, ploidy
     }
     ### (1) Mean value imputation
     time_ini = Sys.time()
-    fname_out_mvi = mvi(fname=list_sim_missing$fname_vcf,
-        fname_out_prefix=paste0("MVI-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id),
-        n_threads=n_threads)
+    fname_out_mvi = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " -m='mean' --fname-out-prefix='MVI-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome=", restrict_linked_loci_per_chromosome, " --n-threads=", n_threads), intern=TRUE), n=1)
     duration_mvi = difftime(Sys.time(), time_ini, units="mins")
     ### (2) Adaptive LD-kNN imputation using default fixed min_loci_corr and max_pool_dist at 0.9 and 0.1, respectively (where min_l_loci=20 and min_k_neighbours=5)
     time_ini = Sys.time()
-    fname_out_aldknni_fixed = aldknni(fname=list_sim_missing$fname_vcf,
-        fname_out_prefix=paste0("AFIXED-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id),
-        restrict_linked_loci_per_chromosome=restrict_linked_loci_per_chromosome,
-        n_threads=n_threads)
+    fname_out_aldknni_fixed = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AFIXED-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome=", restrict_linked_loci_per_chromosome, " --n-threads=", n_threads), intern=TRUE), n=1)
     duration_aldknni_fixed = difftime(Sys.time(), time_ini, units="mins")
     ### (3) Adaptive LD-kNN imputation using optimised min_loci_corr and max_pool_dist (where min_l_loci=20 and min_k_neighbours=5)
     time_ini = Sys.time()
-    fname_out_aldknni_optim = aldknni(fname=list_sim_missing$fname_vcf,
-        fname_out_prefix=paste0("AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id),
-        min_loci_corr=NA,
-        max_pool_dist=NA,
-        restrict_linked_loci_per_chromosome=restrict_linked_loci_per_chromosome,
-        n_threads=n_threads)
+    fname_out_aldknni_optim = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome=", restrict_linked_loci_per_chromosome, " --n-threads=", n_threads, " --min-loci-corr='-1.0' --max-pool-dist='-1.0'"), intern=TRUE), n=1)
     duration_aldknni_optim = difftime(Sys.time(), time_ini, units="mins")
     ### LinkImpute's LD-kNN imputation algorithm for unordered genotype data (forcing all data to be diploids)
     fname_for_linkimpute = paste0("LINKIMPUTE_INPUT-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id,".tsv")
@@ -353,7 +339,7 @@ fn_test_imputation = function(vcf, mat_genotypes, mat_idx_high_conf_data, ploidy
         mat_genotypes_for_linkimpute[is.na(mat_genotypes_for_linkimpute)] = -1
         write.table(mat_genotypes_for_linkimpute, file=fname_for_linkimpute, sep="\t", row.names=FALSE, col.names=FALSE, quote=FALSE)
         time_ini = Sys.time()
-        system(paste0("java -jar ", dir_src, "/linkimpute/LinkImpute.jar --verbose -a ", fname_for_linkimpute, " ", output_for_linkimpute)) ### dir_src is defined in perf.R which sources this Rsccipt
+        system(paste0("java -jar ", dir_src, "/res/linkimpute/LinkImpute.jar --verbose -a ", fname_for_linkimpute, " ", output_for_linkimpute)) ### dir_src is defined in perf.R which sources this Rsccipt
         duration_linkimpute = difftime(Sys.time(), time_ini, units="mins")
         mat_linkimputed = read.delim(output_for_linkimpute, header=FALSE)
         rownames(mat_linkimputed) = rownames(mat_genotypes_for_linkimpute)
@@ -394,7 +380,6 @@ fn_test_imputation = function(vcf, mat_genotypes, mat_idx_high_conf_data, ploidy
             ploidy=2,
             strict_boundaries=strict_boundaries,
             n_threads=n_threads)
-        # print(paste0("metrics_mvi$concordance_classes=", round(metrics_mvi$concordance_classes, 4), "; metrics_aldknni_fixed$concordance_classes=", round(metrics_aldknni_fixed$concordance_classes, 4), "; metrics_aldknni_optim$concordance_classes=", round(metrics_aldknni_optim$concordance_classes, 4), "; metrics_linkimpute$concordance_classes=", round(metrics_linkimpute$concordance_classes, 4)))
     } else {
         df_metrics_across_allele_freqs_frequencies = metrics_aldknni_optim$df_metrics_across_allele_freqs_frequencies
         df_metrics_across_allele_freqs_classes = metrics_aldknni_optim$df_metrics_across_allele_freqs_classes
diff --git a/src/.gitignore b/src/.gitignore
deleted file mode 100644
index c23c7b3..0000000
--- a/src/.gitignore
+++ /dev/null
@@ -1,5 +0,0 @@
-*.o
-*.so
-*.dll
-target
-.cargo
diff --git a/src/Makevars b/src/Makevars
deleted file mode 100644
index 5f15e8a..0000000
--- a/src/Makevars
+++ /dev/null
@@ -1,30 +0,0 @@
-TARGET_DIR = ./rust/target
-LIBDIR = $(TARGET_DIR)/release
-STATLIB = $(LIBDIR)/libimputef.a
-PKG_LIBS = -L$(LIBDIR) -limputef
-
-all: C_clean
-
-$(SHLIB): $(STATLIB)
-
-CARGOTMP = $(CURDIR)/.cargo
-
-$(STATLIB):
-	# In some environments, ~/.cargo/bin might not be included in PATH, so we need
-	# to set it here to ensure cargo can be invoked. It is appended to PATH and
-	# therefore is only used if cargo is absent from the user's PATH.
-	if [ "$(NOT_CRAN)" != "true" ]; then \
-		export CARGO_HOME=$(CARGOTMP); \
-	fi && \
-		export PATH="$(PATH):$(HOME)/.cargo/bin" && \
-		cargo build --lib --release --manifest-path=./rust/Cargo.toml --target-dir $(TARGET_DIR)
-	if [ "$(NOT_CRAN)" != "true" ]; then \
-		rm -Rf $(CARGOTMP) && \
-		rm -Rf $(LIBDIR)/build; \
-	fi
-
-C_clean:
-	rm -Rf $(SHLIB) $(STATLIB) $(OBJECTS)
-
-clean:
-	rm -Rf $(SHLIB) $(STATLIB) $(OBJECTS) rust/target
diff --git a/src/Makevars.ucrt b/src/Makevars.ucrt
deleted file mode 100644
index 17b153e..0000000
--- a/src/Makevars.ucrt
+++ /dev/null
@@ -1,5 +0,0 @@
-# Rtools42 doesn't have the linker in the location that cargo expects, so we
-# need to overwrite it via configuration.
-CARGO_LINKER = x86_64-w64-mingw32.static.posix-gcc.exe
-
-include Makevars.win
diff --git a/src/Makevars.win b/src/Makevars.win
deleted file mode 100644
index 163b3fa..0000000
--- a/src/Makevars.win
+++ /dev/null
@@ -1,40 +0,0 @@
-TARGET = $(subst 64,x86_64,$(subst 32,i686,$(WIN)))-pc-windows-gnu
-
-TARGET_DIR = ./rust/target
-LIBDIR = $(TARGET_DIR)/$(TARGET)/release
-STATLIB = $(LIBDIR)/libimputef.a
-PKG_LIBS = -L$(LIBDIR) -limputef -lws2_32 -ladvapi32 -luserenv -lbcrypt -lntdll
-
-all: C_clean
-
-$(SHLIB): $(STATLIB)
-
-CARGOTMP = $(CURDIR)/.cargo
-
-$(STATLIB):
-	mkdir -p $(TARGET_DIR)/libgcc_mock
-	# `rustc` adds `-lgcc_eh` flags to the compiler, but Rtools' GCC doesn't have
-	# `libgcc_eh` due to the compilation settings. So, in order to please the
-	# compiler, we need to add empty `libgcc_eh` to the library search paths.
-	#
-	# For more details, please refer to
-	# https://github.com/r-windows/rtools-packages/blob/2407b23f1e0925bbb20a4162c963600105236318/mingw-w64-gcc/PKGBUILD#L313-L316
-	touch $(TARGET_DIR)/libgcc_mock/libgcc_eh.a
-
-	# CARGO_LINKER is provided in Makevars.ucrt for R >= 4.2
-	if [ "$(NOT_CRAN)" != "true" ]; then \
-		export CARGO_HOME=$(CARGOTMP); \
-	fi && \
-		export CARGO_TARGET_X86_64_PC_WINDOWS_GNU_LINKER="$(CARGO_LINKER)" && \
-		export LIBRARY_PATH="$${LIBRARY_PATH};$(CURDIR)/$(TARGET_DIR)/libgcc_mock" && \
-		cargo build --target=$(TARGET) --lib --release --manifest-path=./rust/Cargo.toml --target-dir $(TARGET_DIR)
-	if [ "$(NOT_CRAN)" != "true" ]; then \
-		rm -Rf $(CARGOTMP) && \
-		rm -Rf $(LIBDIR)/build; \
-	fi
-
-C_clean:
-	rm -Rf $(SHLIB) $(STATLIB) $(OBJECTS)
-
-clean:
-	rm -Rf $(SHLIB) $(STATLIB) $(OBJECTS) $(TARGET_DIR)
diff --git a/src/entrypoint.c b/src/entrypoint.c
deleted file mode 100644
index 6920da4..0000000
--- a/src/entrypoint.c
+++ /dev/null
@@ -1,8 +0,0 @@
-// We need to forward routine registration from C to Rust
-// to avoid the linker removing the static library.
-
-void R_init_imputef_extendr(void *dll);
-
-void R_init_imputef(void *dll) {
-    R_init_imputef_extendr(dll);
-}
diff --git a/src/rust/Cargo.toml b/src/rust/Cargo.toml
deleted file mode 100644
index 06c84e3..0000000
--- a/src/rust/Cargo.toml
+++ /dev/null
@@ -1,23 +0,0 @@
-[package]
-name = 'imputef'
-version = '0.1.0'
-edition = '2021'
-
-[lib]
-crate-type = [ 'staticlib' ]
-name = 'imputef'
-
-[dependencies]
-extendr-api = '*'
-ndarray = { version = "0.15.6", features = ["rayon"]}
-# ndarray-linalg = { version = "0.16.0", features = ["openblas"] }
-ndarray-linalg = { version = "0.16.0", features = ["intel-mkl-static"] }
-statrs = "0.16.0"
-rand = "0.8.5"
-rayon = "1.7.0"
-
-[profile.dev]
-opt-level = 3
-
-[profile.release]
-opt-level = 3
diff --git a/src/rust/src/aldknni.rs b/src/rust/src/aldknni.rs
deleted file mode 100644
index 6f87bba..0000000
--- a/src/rust/src/aldknni.rs
+++ /dev/null
@@ -1,977 +0,0 @@
-use ndarray::{prelude::*, Zip};
-use rand::{prelude::IteratorRandom, Rng};
-use std::cmp::Ordering;
-use std::fs::{remove_file, OpenOptions};
-use std::io;
-use std::io::Write;
-use std::time::{SystemTime, UNIX_EPOCH};
-
-use crate::helpers::*;
-
-use crate::structs_and_traits::*;
-
-pub fn calculate_genomewide_ld(
-    genotypes_and_phenotypes: &GenotypesAndPhenotypes,
-    restrict_linked_loci_per_chromosome: bool,
-) -> io::Result<Vec<Vec<u8>>> {
-    // Errors and f64::NAN are all converted into 0.0 for simplicity
-    let (_n, p) = genotypes_and_phenotypes
-        .intercept_and_allele_frequencies
-        .dim();
-    let mut corr: Vec<Vec<u8>> = vec![vec![]; p - 1];
-    Zip::indexed(&mut corr).par_for_each(|idx, c| {
-        let current_chromosome = genotypes_and_phenotypes.chromosome[idx].clone();
-        for j in (idx + 1)..p {
-            if restrict_linked_loci_per_chromosome
-                && (genotypes_and_phenotypes.chromosome[j] != current_chromosome)
-            {
-                // We are breaking because we assume that the loci are sorted by chromosomes.
-                break;
-            } else {
-                let corr = match pearsons_correlation_pairwise_complete(
-                    &genotypes_and_phenotypes
-                        .intercept_and_allele_frequencies
-                        .column(idx),
-                    &genotypes_and_phenotypes
-                        .intercept_and_allele_frequencies
-                        .column(j),
-                ) {
-                    Ok(x) => {
-                        if x.0.is_nan() {
-                            0.0
-                        } else {
-                            x.0
-                        }
-                    }
-                    Err(_) => 0.0,
-                };
-                c.push((corr * 255.0).round() as u8);
-            }
-        }
-    });
-    Ok(corr)
-}
-
-fn calculate_genetic_distances_between_pools(
-    idx_row: &usize,
-    linked_loci_idx: &[usize],
-    intercept_and_allele_frequencies: &Array2<f64>,
-) -> io::Result<Array1<f64>> {
-    // Errors and f64::NAN are all converted into the maximum possible distance of 1.00 for simplicity
-    let (n, _p) = intercept_and_allele_frequencies.dim();
-    let q: Array1<f64> = intercept_and_allele_frequencies
-        .row(*idx_row)
-        .select(Axis(0), linked_loci_idx);
-    let mut distances: Array1<f64> = Array1::from_elem(n, 1.0);
-    Zip::indexed(&mut distances).par_for_each(|i, d| {
-        if i != *idx_row {
-            let q1: Array1<f64> = intercept_and_allele_frequencies
-                .row(i)
-                .select(Axis(0), linked_loci_idx);
-            *d = (&q - &q1)
-                .into_iter()
-                .filter(|&x| !x.is_nan())
-                .collect::<Array1<f64>>()
-                .map(|x| x.abs())
-                .mean()
-                .unwrap_or(1.00);
-        }
-    });
-    Ok(distances)
-}
-
-fn find_l_linked_loci(
-    idx_col: usize,
-    corr: &[Vec<u8>],
-    min_loci_corr: &f64,
-    min_l_loci: &usize,
-    restrict_linked_loci_per_chromosome: bool,
-    current_chromosome: &str,
-    chromosomes: &[String],
-) -> io::Result<(Vec<usize>, Vec<f64>)> {
-    // Find loci passing the min_loci_corr threshold, then sort and add more loci if it did not pass the min_l_loci threshold
-    //      - to optimise for the thresholds, set min_l_loci to 0
-    //      - to optimise for counts, set min_loci_corr to 0.0
-    assert!(
-        *min_l_loci > 0,
-        "Error: the minimum number of linked loci need to be greater than 0."
-    );
-    let p = corr.len();
-    let mut vec_corr: Vec<f64> = vec![];
-    let mut vec_idx: Vec<usize> = vec![];
-    // Across rows and at the idx_col of the triangular matrix of correlations
-    for i in 0..idx_col {
-        if restrict_linked_loci_per_chromosome && (chromosomes[i] != *current_chromosome) {
-            // Break if we are not on the same chromosome and we are restricting linked loci to be only within chromosomes. Furthermore, we are assuming loci are sorted by chromosome and position.
-            break;
-        }
-        let c = (corr[i][idx_col - (i + 1)] as f64) / 255.0; // Less the current index as the length of the vectors decreases by 1 each time in addition to 1 less element representing the diagonal elements, i.e. itself
-        if c >= *min_loci_corr {
-            vec_idx.push(i);
-        }
-        vec_corr.push(c);
-    }
-    // Across columns and at the idx_col row of the triangular matrix of correlations
-    for j in 0..(p - idx_col) {
-        if restrict_linked_loci_per_chromosome
-            && (chromosomes[idx_col + j + 1] != *current_chromosome)
-        {
-            // Break if we are not on the same chromosome and we are restricting linked loci to be only within chromosomes. Furthermore, we are assuming loci are sorted by chromosome and position.
-            // See comment below for the explanation for chromosomes[idx_col + j + 1]
-            break;
-        }
-        let c = (corr[idx_col][j] as f64) / 255.0;
-        if c >= *min_loci_corr {
-            vec_idx.push(idx_col + j + 1); // Add the current index as the length of the vectors decreases by 1 each time plus skipping the locus requiring imputation as we did not calculate the correlation of each locus with itself
-        }
-        vec_corr.push(c);
-    }
-    // If less than the minimum number of loci passed the threshold,
-    // or if we are not filtering by minimum loci correlation (i.e. min_loci_corr = 0.0),
-    // then we sort the correlations (decreasing) and pick the top-most correlated loci
-    let (vec_idx, vec_corr) = if (vec_idx.len() < *min_l_loci) || (*min_loci_corr == 0.0) {
-        // Extract indices to reach min_l_loci or if we do not have enough loci, then just vec_corr.len()
-        let mut indices: Vec<usize> = (0..vec_corr.len()).collect();
-        indices.sort_by(
-            |&a, &b| match (vec_corr[b].is_nan(), vec_corr[a].is_nan()) {
-                (true, true) => Ordering::Equal,
-                (true, false) => Ordering::Greater,
-                (false, true) => Ordering::Less,
-                (false, false) => vec_corr[b].partial_cmp(&vec_corr[a]).unwrap(),
-            },
-        );
-        let l_linked_loci = if vec_corr.len() < *min_l_loci {
-            vec_corr.len()
-        } else {
-            *min_l_loci
-        };
-        let indices = indices[0..l_linked_loci].to_vec();
-        // Extract the correlations corresponding to the extracted indices
-        let mut corr: Vec<f64> = vec![];
-        for i in indices.iter() {
-            corr.push(vec_corr[*i]);
-        }
-        (indices, corr)
-    } else {
-        (vec_idx, vec_corr)
-    };
-    Ok((vec_idx, vec_corr))
-}
-
-fn find_k_nearest_neighbours(
-    distances: &Array1<f64>,
-    max_pool_dist: &f64,
-    min_k_neighbours: &usize,
-    idx_col: &usize,
-    intercept_and_allele_frequencies: &Array2<f64>,
-) -> io::Result<(Vec<f64>, Array1<f64>)> {
-    // Find neighbours passing the max_pool_dist threshold, then sort and add more neighbours if it did not pass the min_k_neighbours threshold
-    //      - to optimise for the thresholds, set min_k_neighbours to 0
-    //      - to optimise for counts, set max_pool_dist to 1.0 (maximum possible distance, i.e. mean absolute difference of 1.0 in allele frequency)
-    assert!(
-        *min_k_neighbours > 0,
-        "Error: the minimum number of k-nearest neighbours need to be greater than 0."
-    );
-    let (n, _p) = intercept_and_allele_frequencies.dim();
-    assert_eq!(n, distances.len(), "Error - incompatible number of pools in the genotype matrix and computed distances in find_k_nearest_neighbours().");
-    let mut idx: Vec<usize> = vec![];
-    let mut dist: Vec<f64> = vec![];
-    let mut indices: Vec<usize> = (0..n).collect();
-    indices.sort_by(
-        |&a, &b| match (distances[a].is_nan(), distances[b].is_nan()) {
-            (true, true) => Ordering::Equal,
-            (true, false) => Ordering::Greater,
-            (false, true) => Ordering::Less,
-            (false, false) => distances[a].partial_cmp(&distances[b]).unwrap(),
-        },
-    );
-    // Are we filtering by maximum distance?
-    if *max_pool_dist < 1.00 {
-        for i in indices.clone().into_iter() {
-            let bool_dist_nan = !distances[i].is_nan();
-            let bool_dist_thresh = distances[i] <= *max_pool_dist;
-            let bool_freq_nan = !intercept_and_allele_frequencies[(i, *idx_col)].is_nan();
-            if bool_dist_nan && bool_dist_thresh && bool_freq_nan {
-                idx.push(i);
-                dist.push(distances[i]);
-            }
-        }
-    }
-    // If less than the minimum number of neighbours passed the threshold,
-    // or if we are not filtering by maximum pool distance (i.e. max_pool_dist = 1.00),
-    // then we sort the distances (increasing) and pick the nearest neighbours
-    if (idx.len() < *min_k_neighbours) || (*max_pool_dist == 1.00) {
-        idx = vec![];
-        dist = vec![];
-        for i in indices.clone().into_iter() {
-            let bool_dist_nan = !distances[i].is_nan();
-            let bool_freq_nan = !intercept_and_allele_frequencies[(i, *idx_col)].is_nan();
-            if idx.len() == *min_k_neighbours {
-                break;
-            }
-            if bool_dist_nan && bool_freq_nan {
-                idx.push(i);
-                dist.push(distances[i]);
-            }
-        }
-    }
-    // Extract non-missing allele frequencies at the locus requiring imputation of the k-nearest neighbours
-    let mut freq: Array1<f64> = Array1::from_elem(idx.len(), f64::NAN);
-    for i in 0..idx.len() {
-        freq[i] = intercept_and_allele_frequencies[(idx[i], *idx_col)];
-    }
-    Ok((dist, freq))
-}
-
-fn impute_allele_frequencies(frequencies: &Array1<f64>, distances: &[f64]) -> io::Result<f64> {
-    let n = frequencies.len();
-    for i in 0..n {
-        assert!(
-            !frequencies[i].is_nan(),
-            "Error: There should be no missing allele frequencies here."
-        );
-    }
-    let mut imputed_freqs = 0.0;
-    // Perform weighted mean allele frequencies
-    let additive_inverse_plus_epsilon: Array1<f64> =
-        Array1::from_iter(distances.iter().map(|&x| (1.0 - x) + f64::EPSILON)); // Add a small value if all distances are 1.0 and allow equal contributions in such cases
-    let weights_sum: f64 = additive_inverse_plus_epsilon
-        .iter()
-        .fold(0.0, |sum, x| sum + x);
-    let weights: Array1<f64> = additive_inverse_plus_epsilon / weights_sum;
-    for i in 0..n {
-        imputed_freqs += weights[i] * frequencies[i];
-    }
-    if imputed_freqs.is_nan() {
-        println!("frequencies={:?}", frequencies);
-        println!("distances={:?}", distances);
-    }
-    Ok(imputed_freqs)
-}
-
-impl GenotypesAndPhenotypes {
-    fn per_chunk_aldknni(
-        &self,
-        loci_arguments: (&usize, &usize, &[usize]),
-        optimisation_arguments: (&[f64], &[f64], &usize, &usize, &usize),
-        corr_matrix_arguments: (&[Vec<u8>], bool),
-    ) -> io::Result<(Array2<f64>, f64, f64)> {
-        // Parse arguments
-        let idx_loci_idx_ini: &usize = loci_arguments.0;
-        let idx_loci_idx_fin: &usize = loci_arguments.1;
-        let loci_idx: &[usize] = loci_arguments.2;
-        let vec_min_loci_corr: &[f64] = optimisation_arguments.0;
-        let vec_max_pool_dist: &[f64] = optimisation_arguments.1;
-        let min_l_loci: &usize = optimisation_arguments.2;
-        let min_k_neighbours: &usize = optimisation_arguments.3;
-        let n_reps: &usize = optimisation_arguments.4;
-        let corr: &[Vec<u8>] = corr_matrix_arguments.0;
-        let restrict_linked_loci_per_chromosome: bool = corr_matrix_arguments.1;
-        // Define loci indices
-        let idx_ini = loci_idx[*idx_loci_idx_ini];
-        let idx_fin = loci_idx[*idx_loci_idx_fin];
-        let mut allele_frequencies: Array2<f64> = self
-            .intercept_and_allele_frequencies
-            .slice(s![.., idx_ini..idx_fin])
-            .to_owned();
-        // Define the 2D array used for storing the minimum mean absolute error (MAE) estimates across all missing data across pools and loci.
-        // We encode the MAE as u8 for memory efficiency, where we set 0: u8 as missing.
-        let mut mae_u8: Array2<u8> = Array::from_elem(allele_frequencies.dim(), 0);
-        Zip::indexed(&mut allele_frequencies)
-        .and(&mut mae_u8)
-        .par_for_each(|(i, j_local), q, mu8| {
-            if q.is_nan() {
-                // Define global locus index
-                let j = j_local + idx_ini;
-                // Define the current chromosome
-                let current_chromosome = self.chromosome[j].to_owned();
-                // Define the allele frequencies at the current allele/locus
-                let vec_q: ArrayView1<f64> = self.intercept_and_allele_frequencies.column(j);
-                let n_non_missing = vec_q.fold(0, |t, &x| if !x.is_nan() {t+1}else{t});
-                let n_reps = if *n_reps <= n_non_missing {
-                    *n_reps
-                } else {
-                    n_non_missing
-                };
-                // Select randomly non-missing pools to impute and estimate imputation error from
-                let mut rng: rand::rngs::ThreadRng = rand::thread_rng();
-                let idx_random_pools: Vec<usize> = (0..vec_q.len()).filter(|&idx| !vec_q[idx].is_nan()).choose_multiple(&mut rng, n_reps);
-                // Optimum mae, and parameters
-                let mut optimum_mae: f64 = 1.0;
-                let mut optimum_min_loci_corr: f64 = vec_min_loci_corr[0];
-                let mut optimum_max_pool_dist: f64 = vec_max_pool_dist[0];
-                let mut recent_3_maes: Vec<f64> = vec![f64::NAN; 3];
-                let mut constant_last_3_maes: bool = !recent_3_maes[2].is_nan() && ((recent_3_maes[0]-recent_3_maes[1]).abs() <= f64::EPSILON) && ((recent_3_maes[0]-recent_3_maes[2]).abs() <= f64::EPSILON);
-                // Find the optimal min_loci_corr and max_pool_dist which minimise imputation error (MAE: mean absolute error)
-                // Across minimum loci correlation thresholds
-                for min_loci_corr in vec_min_loci_corr.iter() {
-                    // Find loci most correlated to the major allele of the current locus, i.e. the first allele of the locus as they were sorted by decreasing allele frequency (see Sort trait)
-                    let (linked_loci_idx, _correlations) =
-                        find_l_linked_loci(j, corr, min_loci_corr, min_l_loci,
-                            restrict_linked_loci_per_chromosome,
-                            &current_chromosome,
-                            &self.chromosome).expect("Error calling find_l_linked_loci() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-                    // Forwards across maximum pool distance thresholds
-                    for max_pool_dist in vec_max_pool_dist.iter() {
-                        // Across reps
-                        let mut mae = 0.0;
-                        for idx_i in idx_random_pools.iter() {
-                            // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
-                            let distances_all_loci = calculate_genetic_distances_between_pools(
-                                idx_i,
-                                &linked_loci_idx,
-                                &self.intercept_and_allele_frequencies)
-                                .expect("Error calling calculate_genetic_distances_between_pools() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-                            // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
-                            let (distances, frequencies) =
-                                find_k_nearest_neighbours(
-                                    &distances_all_loci,
-                                    max_pool_dist,
-                                    min_k_neighbours,
-                                    &j,
-                                    &self.intercept_and_allele_frequencies,
-                                )
-                                .expect("Error calling find_k_nearest_neighbours() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-                            // Impute and find the error
-                            mae += (vec_q[*idx_i] - impute_allele_frequencies(&frequencies, &distances).expect("Error calling impute_allele_frequencies() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.")
-                            ).abs();
-                        }
-                        mae /= n_reps as f64;
-                        // The most recent 3 MAEs
-                        recent_3_maes[2] = recent_3_maes[1];
-                        recent_3_maes[1] = recent_3_maes[0];
-                        recent_3_maes[0] = mae;
-                        constant_last_3_maes = !recent_3_maes[2].is_nan() && ((recent_3_maes[0]-recent_3_maes[1]).abs() <= f64::EPSILON) && ((recent_3_maes[0]-recent_3_maes[2]).abs() <= f64::EPSILON);
-                        // Inner loop break conditions
-                        if (mae <= f64::EPSILON) || (mae > optimum_mae) || constant_last_3_maes {
-                            recent_3_maes = vec![f64::NAN; 3];
-                            break;
-                        }
-                        if mae < optimum_mae {
-                            optimum_mae = mae;
-                            optimum_min_loci_corr = *min_loci_corr;
-                            optimum_max_pool_dist = *max_pool_dist;
-                        }
-                    }
-                    // Backwards across maximum pool distance thresholds (to avoid getting stuck at local minima)
-                    if constant_last_3_maes {
-                        for max_pool_dist in vec_max_pool_dist.iter().rev() {
-                            // Across reps
-                            let mut mae = 0.0;
-                            for idx_i in idx_random_pools.iter() {
-                                // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
-                                let distances_all_loci = calculate_genetic_distances_between_pools(
-                                    idx_i,
-                                    &linked_loci_idx,
-                                    &self.intercept_and_allele_frequencies)
-                                    .expect("Error calling calculate_genetic_distances_between_pools() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-                                // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
-                                let (distances, frequencies) =
-                                    find_k_nearest_neighbours(
-                                        &distances_all_loci,
-                                        max_pool_dist,
-                                        min_k_neighbours,
-                                        &j,
-                                        &self.intercept_and_allele_frequencies,
-                                    )
-                                    .expect("Error calling find_k_nearest_neighbours() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-                                // Impute and find the error
-                                mae += (vec_q[*idx_i] - impute_allele_frequencies(&frequencies, &distances).expect("Error calling impute_allele_frequencies() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.")
-                                ).abs();
-                            }
-                            mae /= n_reps as f64;
-                            // The most recent 3 MAEs
-                            recent_3_maes[2] = recent_3_maes[1];
-                            recent_3_maes[1] = recent_3_maes[0];
-                            recent_3_maes[0] = mae;
-                            constant_last_3_maes = !recent_3_maes[2].is_nan() && ((recent_3_maes[0]-recent_3_maes[1]).abs() <= f64::EPSILON) && ((recent_3_maes[0]-recent_3_maes[2]).abs() <= f64::EPSILON);
-                            // Inner loop break conditions
-                            if (mae <= f64::EPSILON) || (mae > optimum_mae) || constant_last_3_maes {
-                                recent_3_maes = vec![f64::NAN; 3];
-                                break;
-                            }
-                            if mae < optimum_mae {
-                                optimum_mae = mae;
-                                optimum_min_loci_corr = *min_loci_corr;
-                                optimum_max_pool_dist = *max_pool_dist;
-                            }
-                        }
-                    }
-
-                }
-                // Take note of the minimum MAE which we code are u8 for memory efficiency
-                // We use 254 instead of 255 and add 1 because we set 0 as missing above
-                *mu8 = (optimum_mae * 254.0).round() as u8 + 1;
-                // Impute actual missing data point (ith pool and jth locus)
-                // Find loci most correlated to the major allele of the current locus, i.e. the first allele of the locus as they were sorted by decreasing allele frequency (see Sort trait)
-                let (linked_loci_idx, _correlations) =
-                    find_l_linked_loci(j, corr, &optimum_min_loci_corr, min_l_loci,
-                        restrict_linked_loci_per_chromosome,
-                        &current_chromosome,
-                        &self.chromosome).expect("Error calling find_l_linked_loci() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-                // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
-                let distances_all_loci = calculate_genetic_distances_between_pools(
-                    &i,
-                    &linked_loci_idx,
-                    &self.intercept_and_allele_frequencies)
-                    .expect("Error calling calculate_genetic_distances_between_pools() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-                // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
-                let (distances, frequencies) =
-                    find_k_nearest_neighbours(
-                        &distances_all_loci,
-                        &optimum_max_pool_dist,
-                        min_k_neighbours,
-                        &j,
-                        &self.intercept_and_allele_frequencies,
-                    )
-                    .expect("Error calling find_k_nearest_neighbours() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-                // Impute missing allele frequencies at the current locus
-                *q = impute_allele_frequencies(&frequencies, &distances).expect("Error calling impute_allele_frequencies() within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes trait.");
-            }
-        });
-        // Extract average minimum MAE across loci and pools (Note that we used 0: u8 as missing)
-        let mut sum_mae = 0.0;
-        let mut n_missing = 0.0;
-        for mu8 in mae_u8.into_iter() {
-            if mu8 > 0 {
-                sum_mae += (mu8 as f64 - 1.0) / 255.0;
-                n_missing += 1.0;
-            }
-        }
-        // Correct for allele frequency over- and under-flows, as we are assuming all loci are represented by all of its alleles (see assumptions above)
-        // Local positions in the chunk (add loci_idx[*idx_loci_idx_ini] to get the global index)
-        let mut vec_chunk_loci_idx: Vec<usize> = vec![];
-        for idx in loci_idx
-            .iter()
-            .take(*idx_loci_idx_fin + 1)
-            .skip(*idx_loci_idx_ini)
-        {
-            vec_chunk_loci_idx.push(idx - idx_ini);
-        }
-        let n = allele_frequencies.nrows();
-        for j in 0..(vec_chunk_loci_idx.len() - 1) {
-            let idx_locus_ini = vec_chunk_loci_idx[j];
-            let idx_locus_fin = vec_chunk_loci_idx[j + 1];
-            for i in 0..n {
-                if self.intercept_and_allele_frequencies
-                    [(i, (idx_locus_ini + loci_idx[*idx_loci_idx_ini]))]
-                    .is_nan()
-                {
-                    let sum = allele_frequencies
-                        .slice(s![i, idx_locus_ini..idx_locus_fin])
-                        .sum();
-                    if sum != 1.0 {
-                        for k in idx_locus_ini..idx_locus_fin {
-                            allele_frequencies[(i, k)] /= sum;
-                        }
-                    }
-                }
-            }
-        }
-        Ok((allele_frequencies, sum_mae, n_missing))
-    }
-
-    pub fn adaptive_ld_knn_imputation(
-        &self,
-        loci_idx: &[usize],
-        optimisation_arguments: (&f64, &f64, &usize, &usize, &usize),
-        corr_matrix_arguments: (&[Vec<u8>], bool),
-        n_threads: &usize,
-        prefix: &str,
-    ) -> io::Result<(String, f64)> {
-        // We are assuming that all non-zero alleles across pools are kept, i.e. biallelic loci have 2 columns, triallelic have 3, and so on.
-        //      - Input vcf file will have all alleles per locus extracted.
-        //      - Similarly, input sync file will have all alleles per locus extracted.
-        //      - Finally, input allele frequency table file which can be represented by all alleles or one less allele per locus will be appended with the alternative allele if the sum of allele frequencies per locus do not add up to one.
-        self.check().expect("Error self.check() within adaptive_ld_knn_imputation() method of GenotypesAndPhenotypes struct.");
-        // Parse arguments
-        let min_loci_corr: &f64 = optimisation_arguments.0;
-        let max_pool_dist: &f64 = optimisation_arguments.1;
-        let min_l_loci: &usize = optimisation_arguments.2;
-        let min_k_neighbours: &usize = optimisation_arguments.3;
-        let n_reps: &usize = optimisation_arguments.4;
-        let corr: &[Vec<u8>] = corr_matrix_arguments.0;
-        let restrict_linked_loci_per_chromosome: bool = corr_matrix_arguments.1;
-        // Define fixed linkage and distance thresholds, i.e. the minimum number of loci to use in estimating genetic distances, and the minimum number of nearest neighbours to include in imputation
-        let (n, p) = self.intercept_and_allele_frequencies.dim();
-        let min_l_loci = if *min_l_loci >= p { p - 1 } else { *min_l_loci };
-        let min_k_neighbours = if *min_k_neighbours >= n {
-            n - 1
-        } else {
-            *min_k_neighbours
-        };
-        // Define the range of minimum loci correlation and maximum pool distance thresholds to be used for optimisation.
-        // However, if the user-supplied values are non-missing then that user-supplied fixed threshold will be used without optimisation
-        // We have set a hard-coded number of steps which can be explored across the 2 parameter spaces, i.e. 10 steps provides a reasonable balance between accuracy and computational efficiency
-        let n_steps: usize = 10;
-        let vec_min_loci_corr: Vec<f64> = if min_loci_corr.is_nan() {
-            (0..=n_steps)
-                .rev()
-                .map(|x| x as f64 / n_steps as f64)
-                .collect()
-        } else {
-            vec![*min_loci_corr]
-        };
-        let vec_max_pool_dist: Vec<f64> = if max_pool_dist.is_nan() {
-            (0..=n_steps).map(|x| x as f64 / n_steps as f64).collect()
-        } else {
-            vec![*max_pool_dist]
-        };
-
-        // Define chunks which respect loci groupings
-        let mut n_chunks = *n_threads; // Should be equal to the number of threads because std::thread::scope will wait for other threads to finish before starting with another thread once it finishes
-        let l = loci_idx.len();
-        let chunk_size = l / n_chunks;
-        // Define the indices of the indices of loci
-        let vec_idx_loci_idx_ini: Vec<usize> = (0..(l - chunk_size)).step_by(chunk_size).collect();
-        let mut vec_idx_loci_idx_fin: Vec<usize> = (chunk_size..l).step_by(chunk_size).collect();
-        let idx_fin = vec_idx_loci_idx_fin[vec_idx_loci_idx_fin.len() - 1];
-        if idx_fin != (l - 1) {
-            vec_idx_loci_idx_fin.pop();
-            vec_idx_loci_idx_fin.push(l - 1);
-        }
-        assert_eq!(vec_idx_loci_idx_ini.len(), vec_idx_loci_idx_fin.len());
-        n_chunks = vec_idx_loci_idx_ini.len();
-
-        // Instantiate thread object for parallel execution
-        let mut thread_objects: Vec<(String, f64, f64)> = vec![];
-        for i in 0..n_chunks {
-            let idx_loci_idx_ini = vec_idx_loci_idx_ini[i];
-            let idx_loci_idx_fin = vec_idx_loci_idx_fin[i];
-            let thread = std::thread::scope(|_scope| {
-                let (allele_frequencies, sum_mae, n_missing) = self
-                    .per_chunk_aldknni(
-                        (&idx_loci_idx_ini, &idx_loci_idx_fin, &loci_idx),
-                        (
-                            &vec_min_loci_corr,
-                            &vec_max_pool_dist,
-                            &min_l_loci,
-                            &min_k_neighbours,
-                            &n_reps,
-                        ),
-                        (&corr, restrict_linked_loci_per_chromosome),
-                    )
-                    .expect("Error executing per_chunk_aldknni() method on self_clone.");
-                // Write-out intermediate file
-                let idx_ini = loci_idx[idx_loci_idx_ini];
-                let idx_fin = loci_idx[idx_loci_idx_fin];
-                let time = SystemTime::now()
-                        .duration_since(UNIX_EPOCH)
-                        .expect("Error extracting time in UNIX_EPOCH within write_csv() method for GenotypesAndPhenotypes struct.")
-                        .as_secs_f64();
-                let mut rng = rand::thread_rng();
-                let random_number = rng.gen_range(1_000_000..10_000_000);
-                let n_digits: usize = loci_idx
-                    .last()
-                    .expect("Error extracting the last element of loci_idx. Probably empty.")
-                    .to_owned()
-                    .to_string()
-                    .len();
-                let mut start_index = idx_ini.to_string();
-                let mut end_index = idx_fin.to_string();
-                for _ in 0..(n_digits - start_index.len()) {
-                    start_index = "0".to_owned() + &start_index;
-                }
-                for _ in 0..(n_digits - end_index.len()) {
-                    end_index = "0".to_owned() + &end_index;
-                }
-                let fname_intermediate_file: String = prefix.to_owned()
-                    + "-"
-                    + &start_index
-                    + "-"
-                    + &end_index
-                    + "-"
-                    + &time.to_string()
-                    + &random_number.to_string()
-                    + ".tmp";
-                let chromosome = self.chromosome[idx_ini..idx_fin].to_owned();
-                let position = self.position[idx_ini..idx_fin].to_owned();
-                let allele = self.allele[idx_ini..idx_fin].to_owned();
-                let p = allele_frequencies.ncols();
-                assert_eq!(chromosome.len(), p, "Error, the number of chromosome names and the total number of loci are not equal.");
-                // Instantiate output file
-                let error_writing_file =
-                    "Unable to create file: ".to_owned() + &fname_intermediate_file;
-                let mut file_out = OpenOptions::new()
-                    .create_new(true)
-                    .write(true)
-                    .append(false)
-                    .open(&fname_intermediate_file)
-                    .expect(&error_writing_file);
-                // Write the header only for the first chunk
-                if i == 0 {
-                    file_out
-                        .write_all(
-                            ("#chr,pos,allele,".to_owned() + &self.pool_names.join(",") + "\n").as_bytes(),
-                        )
-                        .expect("Error calling write_all() within the write_csv() method for GenotypesAndPhenotypes struct.");
-                }
-                // Write allele frequencies line by line
-                for j in 0..p {
-                    let line = [
-                        chromosome[j].to_owned(),
-                        position[j].to_string(),
-                        allele[j].to_owned(),
-                        allele_frequencies
-                            .column(j)
-                            .iter()
-                            .map(|&x| parse_f64_roundup_and_own(x, 6))
-                            .collect::<Vec<String>>()
-                            .join(","),
-                    ]
-                    .join(",")
-                        + "\n";
-                    file_out.write_all(line.as_bytes()).expect("Error calling write_all() per line of the output file within the write_csv() method for GenotypesAndPhenotypes struct.");
-                }
-                (fname_intermediate_file, sum_mae, n_missing)
-            });
-            thread_objects.push(thread);
-        }
-        // Concatenate output per chunk
-        let mut vec_fname_intermediate_files_and_mae: Vec<(String, f64, f64)> = vec![];
-        for thread in thread_objects {
-            vec_fname_intermediate_files_and_mae.push(thread);
-        }
-        // Sort by intermediate output filenames (named according to indices)
-        vec_fname_intermediate_files_and_mae.sort_by(|a, b| {
-            a.0.partial_cmp(&b.0)
-                .expect("Error sorting intermediate output filenames")
-        });
-        // Concatenate intermediate output filenames together and calculate mae
-        let mut file_0 = OpenOptions::new()
-            .append(true)
-            .open(&vec_fname_intermediate_files_and_mae[0].0)
-            .expect("Error opening the intermediate file of the first chunk.");
-        let mut sum_mae = vec_fname_intermediate_files_and_mae[0].1;
-        let mut n_missing = vec_fname_intermediate_files_and_mae[0].2;
-        for name_and_mae in vec_fname_intermediate_files_and_mae.iter().skip(1) {
-            let mut file_1 = OpenOptions::new()
-                .read(true)
-                .open(&name_and_mae.0)
-                .expect("Error opening the intermediate file of a chunk.");
-            io::copy(&mut file_1, &mut file_0)
-                .expect("Error concatenating intermediate output files.");
-            remove_file(&name_and_mae.0).expect("Error removing the intermediate file of a chunk.");
-            sum_mae += name_and_mae.1;
-            n_missing += name_and_mae.2;
-        }
-        let mae = sum_mae / n_missing;
-        Ok((vec_fname_intermediate_files_and_mae[0].0.to_owned(), mae))
-    }
-}
-
-pub fn impute_aldknni(
-    genotypes_and_phenotypes: GenotypesAndPhenotypes,
-    filter_stats: &FilterStats,
-    optimisation_arguments: (&f64, &f64, &usize, &usize, &usize),
-    restrict_linked_loci_per_chromosome: bool,
-    n_threads: &usize,
-    out: &str,
-) -> io::Result<String> {
-    // Parse arguments
-    let min_loci_corr: &f64 = optimisation_arguments.0;
-    let max_pool_dist: &f64 = optimisation_arguments.1;
-    let _min_l_loci: &usize = optimisation_arguments.2;
-    let _min_k_neighbours: &usize = optimisation_arguments.3;
-    let _n_reps: &usize = optimisation_arguments.4;
-    // Extract loci indices
-    let (loci_idx, _loci_chr, _loci_pos) = genotypes_and_phenotypes.count_loci().expect("Error calling count_loci() method within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes struct.");
-
-    // Calculate LD across the entire genome
-    println!("Estimating linkage between loci across the entire genome.");
-    let corr = calculate_genomewide_ld(
-        &genotypes_and_phenotypes,
-        restrict_linked_loci_per_chromosome,
-    )
-    .expect("Error estimating pairwise linkage between loci across the entire genome.");
-    if min_loci_corr.is_nan() || max_pool_dist.is_nan() {
-        println!("Optimising and estimating imputation accuracy.");
-    } else {
-        println!("Estimating imputation accuracy.");
-    }
-    let start = std::time::SystemTime::now();
-    let (fname_imputed, mae) = genotypes_and_phenotypes
-        .adaptive_ld_knn_imputation(
-            &loci_idx,
-            optimisation_arguments,
-            (&corr, restrict_linked_loci_per_chromosome),
-            n_threads,
-            &(out.replace(".csv", "")),
-        )
-        .expect("Error calling adaptive_ld_knn_imputation() within impute_aldknni().");
-    let end = std::time::SystemTime::now();
-    let duration = end.duration_since(start).expect("Error measuring the duration of running adaptive_ld_knn_imputation() within impute_aldknni().");
-    println!("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-    println!(
-        "Expected imputation accuracy in terms of mean absolute error: {}",
-        mae
-    );
-    println!("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-
-    let mut genotypes_and_phenotypes = FileGeno {
-        filename: fname_imputed.to_owned(),
-    }
-    .convert_into_genotypes_and_phenotypes(filter_stats, false, n_threads)
-    .expect("Error loading the imputed genotype file.");
-    remove_file(fname_imputed).expect("Error removing concatenated intermediate file.");
-
-    println!(
-        "Adaptive LD-kNN imputation: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
-        genotypes_and_phenotypes.coverages.nrows(),
-        genotypes_and_phenotypes.coverages.ncols(),
-        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity of the data using missing_rate() method within impute_aldknni()."),
-        duration.as_secs()
-    );
-    // Remove 100% of the loci with missing data
-    let start = std::time::SystemTime::now();
-    genotypes_and_phenotypes
-        .filter_out_top_missing_loci(&1.00)
-        .expect("Error calling filter_out_top_missing_loci() method within impute_aldknni().");
-    let end = std::time::SystemTime::now();
-    let duration = end.duration_since(start).expect("Error measuring the duration of running filter_out_top_missing_loci() within impute_aldknni().");
-    println!(
-        "Missing data removed, i.e. loci which cannot be imputed because of extreme sparsity: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
-        genotypes_and_phenotypes.coverages.nrows(),
-        genotypes_and_phenotypes.coverages.ncols(),
-        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity of the data using missing_rate() method after filtering for missing top loci within impute_aldknni()."),
-        duration.as_secs()
-    );
-    // Output
-    let out = genotypes_and_phenotypes
-        .write_csv(filter_stats, false, out, n_threads)
-        .expect(
-            "Error writing the output file using the write_csv() method within impute_aldknni().",
-        );
-    Ok(out)
-}
-
-////////////////////////////////////////////////////////////////////////////////////////////////////////////
-#[cfg(test)]
-mod tests {
-    use super::*;
-    #[test]
-    fn test_aldknni() {
-        let file_sync = FileSync {
-            filename: "./tests/test.sync".to_owned(),
-            test: "load".to_owned(),
-        };
-        let file_phen = FilePhen {
-            filename: "./tests/test_pheno.csv".to_owned(),
-            delim: ",".to_owned(),
-            names_column_id: 0,
-            sizes_column_id: 1,
-            trait_values_column_ids: vec![2, 3],
-            format: "default".to_owned(),
-        };
-        let file_sync_phen = *(file_sync, file_phen).lparse().unwrap();
-        let filter_stats = FilterStats {
-            remove_ns: true,
-            min_quality: 0.005,
-            min_coverage: 1,
-            min_allele_frequency: 0.005,
-            max_missingness_rate: 0.0,
-            pool_sizes: vec![20., 20., 20., 20., 20.],
-        };
-        let n_threads = 2;
-        let mut frequencies_and_phenotypes = file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &n_threads)
-            .unwrap();
-        println!(
-            "Before simulating missing data:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        let min_depth_below_which_are_missing = 5.0;
-        let max_depth_above_which_are_missing = 100.0;
-        let _ = frequencies_and_phenotypes
-            .set_missing_by_depth(
-                &min_depth_below_which_are_missing,
-                &max_depth_above_which_are_missing,
-            )
-            .unwrap();
-        // frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 1)] = f64::NAN;
-        // frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 2)] = f64::NAN;
-        // frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 5)] = f64::NAN;
-        // frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 6)] = f64::NAN;
-        println!(
-            "Before imputation:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        let n_nan = frequencies_and_phenotypes
-            .intercept_and_allele_frequencies
-            .iter()
-            .fold(0, |n_nan, &x| if x.is_nan() { n_nan + 1 } else { n_nan });
-        println!("n_nan={}", n_nan);
-        assert_eq!(n_nan, 22_997);
-
-        // CORRELATION MATRIX CALCULATION
-        let corr = calculate_genomewide_ld(&frequencies_and_phenotypes, false).unwrap();
-        assert_eq!(
-            corr.len(),
-            frequencies_and_phenotypes
-                .intercept_and_allele_frequencies
-                .ncols()
-                - 1
-        );
-        assert_eq!(
-            corr[0].len(),
-            frequencies_and_phenotypes
-                .intercept_and_allele_frequencies
-                .ncols()
-                - 1
-        );
-        assert_eq!(
-            corr[1].len(),
-            frequencies_and_phenotypes
-                .intercept_and_allele_frequencies
-                .ncols()
-                - 2
-        );
-        assert_eq!(
-            corr[2].len(),
-            frequencies_and_phenotypes
-                .intercept_and_allele_frequencies
-                .ncols()
-                - 3
-        );
-        // LINKED LOCI IDENTIFICATION
-        let (linked_loci_idx, correlations) = find_l_linked_loci(
-            7020,
-            &corr,
-            &0.99,
-            &500,
-            false,
-            &"chr1".to_owned(),
-            &frequencies_and_phenotypes.chromosome,
-        )
-        .unwrap();
-        // println!("linked_loci_idx={:?}", linked_loci_idx);
-        // println!("linked_loci_idx[0]={:?}", linked_loci_idx[0]);
-        // println!("frequencies_and_phenotypes.intercept_and_allele_frequencies.dim()={:?}", frequencies_and_phenotypes.intercept_and_allele_frequencies.dim());
-        // println!("linked_loci_idx.len()={:?}", linked_loci_idx.len());
-        assert_eq!(linked_loci_idx.len(), correlations.len());
-        assert_eq!(linked_loci_idx.len(), 500);
-        // GENETIC DISTANCES BETWEEN POOLS USING LINKED LOCI
-        let idx_pool = 0;
-        let distances = calculate_genetic_distances_between_pools(
-            &idx_pool,
-            &linked_loci_idx,
-            &frequencies_and_phenotypes.intercept_and_allele_frequencies,
-        )
-        .unwrap();
-        // println!("distances={:?}", distances);
-        assert_eq!(distances.len(), 5);
-        // K-NEAREST NEIGHBOURS
-        let idx_locus_ini = 1;
-        let _idx_locus_fin = 3;
-        let (distances, frequencies) = find_k_nearest_neighbours(
-            &distances,
-            &0.5,
-            &3,
-            &idx_locus_ini,
-            &frequencies_and_phenotypes.intercept_and_allele_frequencies,
-        )
-        .unwrap();
-        // println!("idx_neighbours={:?}", idx_neighbours);
-        // println!("distances={:?}", distances);
-        // println!("frequencies={:?}", frequencies);
-        assert_eq!(frequencies.len(), 3);
-        // IMPUTATION
-        let imputed_freq = impute_allele_frequencies(&frequencies, &distances).unwrap();
-        println!("imputed_freq={:?}", imputed_freq);
-        assert_eq!(imputed_freq, 0.2249532554929301);
-
-        let (loci_idx, _loci_chr, _loci_pos) = frequencies_and_phenotypes.count_loci().unwrap();
-        // let frequencies_and_phenotypes_clone = frequencies_and_phenotypes.clone();
-        let n_reps = 5;
-        let min_loci_corr = f64::NAN;
-        let max_pool_dist = f64::NAN;
-        let min_l_loci = 10;
-        let min_k_neighbours = 10;
-        let restrict_linked_loci_per_chromosome = false;
-        let n_threads = 8;
-
-        let (_fname_imputed, mae) = frequencies_and_phenotypes
-            .adaptive_ld_knn_imputation(
-                &loci_idx,
-                (
-                    &min_loci_corr,
-                    &max_pool_dist,
-                    &min_l_loci,
-                    &min_k_neighbours,
-                    &n_reps,
-                ),
-                (&corr, restrict_linked_loci_per_chromosome),
-                &n_threads,
-                &"intermediate_output".to_owned(),
-            )
-            .unwrap();
-        println!(
-            "After imputation:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        println!("Estimated MAE={}", mae);
-        // let n_nan = frequencies_and_phenotypes
-        //     .intercept_and_allele_frequencies
-        //     .iter()
-        //     .fold(0, |n_nan, &x| if x.is_nan() { n_nan + 1 } else { n_nan });
-        // println!("n_nan={}", n_nan);
-        // assert_eq!(n_nan, 1_915); // corresponds to the 1_915 alleles completely missing across all pools
-
-        let keep_p_minus_1 = false;
-        let genotypes_and_phenotypes = file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, keep_p_minus_1, &n_threads)
-            .unwrap();
-
-        let outname = impute_aldknni(
-            genotypes_and_phenotypes,
-            &filter_stats,
-            (
-                &min_loci_corr,
-                &max_pool_dist,
-                &min_l_loci,
-                &min_k_neighbours,
-                &n_reps,
-            ),
-            restrict_linked_loci_per_chromosome,
-            &n_threads,
-            &"test-impute_aldknni.csv".to_owned(),
-        )
-        .unwrap();
-        assert_eq!(outname, "test-impute_aldknni.csv".to_owned()); // Do better!!! Load data - thus working on improving load_table()
-
-        // println!("frequencies_and_phenotypes.intercept_and_allele_frequencies.slice(s![0..5, 39..42])={:?}", frequencies_and_phenotypes.intercept_and_allele_frequencies.slice(s![0..5, 39..42]));
-        // assert_eq!(
-        //     frequencies_and_phenotypes
-        //         .intercept_and_allele_frequencies
-        //         .slice(s![0..5, 1..3])
-        //         .sum_axis(Axis(1))
-        //         .map(|x| sensible_round(*x, 2)),
-        //     Array1::from_elem(5, 1.0)
-        // );
-        // assert_eq!(
-        //     frequencies_and_phenotypes
-        //         .intercept_and_allele_frequencies
-        //         .slice(s![0..5, 39..42])
-        //         .sum_axis(Axis(1))
-        //         .map(|x| sensible_round(*x, 2)),
-        //     Array1::from_elem(5, 1.0)
-        // );
-        // assert_eq!(
-        //     frequencies_and_phenotypes
-        //         .intercept_and_allele_frequencies
-        //         .slice(s![0..5, 119..121])
-        //         .sum_axis(Axis(1))
-        //         .map(|x| sensible_round(*x, 2)),
-        //     Array1::from_elem(5, 1.0)
-        // );
-        // assert_eq!(
-        //     frequencies_and_phenotypes
-        //         .intercept_and_allele_frequencies
-        //         .slice(s![0..5, 400..402])
-        //         .sum_axis(Axis(1))
-        //         .map(|x| sensible_round(*x, 2)),
-        //     Array1::from_elem(5, 1.0)
-        // );
-        // assert_eq!(0, 1);
-    }
-}
diff --git a/src/rust/src/filter_missing.rs b/src/rust/src/filter_missing.rs
deleted file mode 100644
index deda6f4..0000000
--- a/src/rust/src/filter_missing.rs
+++ /dev/null
@@ -1,364 +0,0 @@
-use ndarray::prelude::*;
-use std::io::{self, Error, ErrorKind};
-
-use crate::helpers::*;
-use crate::structs_and_traits::*;
-
-impl GenotypesAndPhenotypes {
-    pub fn set_missing_by_depth(
-        &mut self,
-        min_depth_below_which_are_missing: &f64,
-        max_depth_above_which_are_missing: &f64,
-    ) -> io::Result<&mut Self> {
-        self.check().expect("Error calling check() method within set_missing_by_depth() method for GenotypesAndPhenotypes struct.");
-        let (n, _p) = self.intercept_and_allele_frequencies.dim();
-        let (_n, l) = self.coverages.dim();
-        // println!(
-        //     "self.intercept_and_allele_frequencies.dim()={:?}",
-        //     self.intercept_and_allele_frequencies.dim()
-        // );
-        // println!("self.chromosome.len()={:?}", self.chromosome.len());
-        // println!("self.position.len()={:?}", self.position.len());
-        // println!("self.allele.len()={:?}", self.allele.len());
-        // println!("self.coverages.dim()={:?}", self.coverages.dim());
-        let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error defining loci indexes and identities via count_loci() method within set_missing_by_depth() method for GenotypesAndPhenotypes struct.");
-        for i in 0..n {
-            for j in 0..l {
-                if (self.coverages[(i, j)] < *min_depth_below_which_are_missing)
-                    || (self.coverages[(i, j)] > *max_depth_above_which_are_missing)
-                {
-                    self.coverages[(i, j)] = f64::NAN;
-                    // Use the indexes of the locus to set missing values to all alleles in the locus
-                    let idx_ini = loci_idx[j];
-                    let idx_fin = loci_idx[j + 1];
-                    for k in idx_ini..idx_fin {
-                        self.intercept_and_allele_frequencies[(i, k)] = f64::NAN;
-                    }
-                }
-            }
-        }
-        self.check().expect("Error calling check() method within set_missing_by_depth() method for GenotypesAndPhenotypes struct.");
-        Ok(self)
-    }
-
-    pub fn missing_rate(&mut self) -> io::Result<f64> {
-        let (n, l) = self.coverages.dim();
-        let sum = self
-            .coverages
-            .fold(0, |sum, &x| if x.is_nan() { sum + 1 } else { sum });
-        Ok(sensible_round(sum as f64 * 100.0 / ((n * l) as f64), 5))
-    }
-
-    pub fn filter_out_top_missing_pools(
-        &mut self,
-        frac_top_missing_pools: &f64,
-    ) -> io::Result<&mut Self> {
-        self.check().expect("Error calling check() method within filter_out_top_missing_pools() method for GenotypesAndPhenotypes struct.");
-        let n = self.intercept_and_allele_frequencies.nrows();
-        let p = self.intercept_and_allele_frequencies.ncols() - 1;
-        let missingness_per_pool: Array1<f64> = self
-            .intercept_and_allele_frequencies
-            .map_axis(Axis(1), |x| {
-                x.fold(
-                    0_u64,
-                    |n_missing, &x| if x.is_nan() { n_missing + 1 } else { n_missing },
-                )
-            })
-            .map(|&x| x as f64 / p as f64);
-        // println!("missingness_per_pool={:?}", missingness_per_pool);
-        // Define the total number of pools that will be retained
-        let n_missing =
-            missingness_per_pool.fold(0.0, |sum, &x| if x > 0.0 { sum + 1.0 } else { sum });
-        let n_after_filtering = n - (n_missing * frac_top_missing_pools).ceil() as usize;
-        if n_after_filtering == 0 {
-            return Err(Error::new(
-                ErrorKind::Other,
-                "No pools left after filtering, please reduce 'frac_top_missing_pools'".to_owned(),
-            ));
-        }
-        // Sort by increasing missingness
-        let mut idx = (0..n).collect::<Vec<usize>>();
-        idx.sort_by(|&a, &b| {
-            missingness_per_pool[a]
-                .partial_cmp(&missingness_per_pool[b])
-                .expect("Error sorting indexes by sparsity  within filter_out_top_missing_pools() method for GenotypesAndPhenotypes struct.")
-        });
-        // println!("idx={:?}", idx);
-        // Omit the pools with high missingness rates
-        idx = idx[0..n_after_filtering].to_vec();
-        // println!("idx={:?}", idx);
-        // Sort the indexes so that we maintain the order of the pools
-        idx.sort();
-        // println!("idx={:?}", idx);
-        let mut new_intercept_and_allele_frequencies =
-            Array2::from_elem((n_after_filtering, p + 1), f64::NAN);
-        let mut new_phenotypes: Array2<f64> =
-            Array2::from_elem((n_after_filtering, self.phenotypes.ncols()), f64::NAN);
-        let mut new_pool_names: Vec<String> = vec![];
-        let mut new_coverages: Array2<f64> =
-            Array2::from_elem((n_after_filtering, self.coverages.ncols()), f64::NAN);
-        for i in 0..n_after_filtering {
-            // Pool index in the old data
-            let i_ = idx[i];
-            // Intercept
-            new_intercept_and_allele_frequencies[(i, 0)] = 1.0;
-            for j in 1..(p + 1) {
-                new_intercept_and_allele_frequencies[(i, j)] =
-                    self.intercept_and_allele_frequencies[(i_, j)];
-            }
-            for k in 0..new_phenotypes.ncols() {
-                new_phenotypes[(i, k)] = self.phenotypes[(i_, k)];
-            }
-            new_pool_names.push(self.pool_names[i_].to_owned());
-            for l in 0..new_coverages.ncols() {
-                new_coverages[(i, l)] = self.coverages[(i_, l)];
-            }
-        }
-        self.intercept_and_allele_frequencies = new_intercept_and_allele_frequencies;
-        self.phenotypes = new_phenotypes;
-        self.pool_names = new_pool_names;
-        self.coverages = new_coverages;
-        // println!("self.chromosome.len()={:?}", self.chromosome.len());
-        // println!("self.position.len()={:?}", self.position.len());
-        // println!("self.allele.len()={:?}", self.allele.len());
-        // println!("self.intercept_and_allele_frequencies.dim()={:?}", self.intercept_and_allele_frequencies.dim());
-        // println!("self.coverages.len()={:?}", self.coverages.dim());
-        self.check().expect("Error calling check() method within filter_out_top_missing_pools() method for GenotypesAndPhenotypes struct.");
-        Ok(self)
-    }
-
-    // For thinning the data before imputation and also removing completely missing loci after imputation
-    pub fn filter_out_top_missing_loci(
-        &mut self,
-        frac_top_missing_loci: &f64,
-    ) -> io::Result<&mut Self> {
-        self.check().expect("Error calling check() method within filter_out_top_missing_loci() method for GenotypesAndPhenotypes struct.");
-        let n = self.intercept_and_allele_frequencies.nrows();
-        let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error calling count_loci() method within filter_out_top_missing_loci() method for GenotypesAndPhenotypes struct.");
-        let l = loci_idx.len() - 1; // Less one for the trailing locus
-                                    // Define loci start and end indexes
-        let loci_idx_ini = loci_idx[0..l].to_vec();
-        let loci_idx_fin = loci_idx[1..(l + 1)].to_vec();
-        let missingness_per_locus: Array1<f64> = self
-            .coverages
-            .map_axis(Axis(0), |x| {
-                x.fold(
-                    0_u64,
-                    |n_missing, &x| if x.is_nan() { n_missing + 1 } else { n_missing },
-                )
-            })
-            .map(|&x| x as f64 / n as f64);
-        // println!("missingness_per_locus={:?}", missingness_per_locus);
-        // Define the total number of pools that will be retained
-        let l_missing =
-            missingness_per_locus.fold(0.0, |sum, &x| if x > 0.0 { sum + 1.0 } else { sum });
-        // Define the number of loci kept after filtering
-        let l_after_filtering = l - (l_missing * frac_top_missing_loci).ceil() as usize;
-        if l_after_filtering == 0 {
-            return Err(Error::new(
-                ErrorKind::Other,
-                "No loci left after filtering, please reduce 'frac_top_missing_loci'".to_owned(),
-            ));
-        }
-        // Sort by increasing missingness
-        let mut idx = (0..l).collect::<Vec<usize>>();
-        idx.sort_by(|&a, &b| {
-            missingness_per_locus[a]
-                .partial_cmp(&missingness_per_locus[b])
-                .expect("Error sorting indexes by sparsity  within filter_out_top_missing_loci() method for GenotypesAndPhenotypes struct.")
-        });
-        // println!("idx={:?}", idx);
-        // Omit the loci with high missingness rates
-        idx = idx[0..l_after_filtering].to_vec();
-        // println!("idx={:?}", idx);
-        // Sort the indexes so that we maintain the order of the loci
-        idx.sort();
-        // println!("idx={:?}", idx);
-        // Find the number of columns first using the first pool and also set the loci coordinates
-        let mut vec_intercept_and_allele_frequencies_pool_0: Vec<f64> =
-            vec![self.intercept_and_allele_frequencies[(0, 0)]];
-        let mut new_chromosome: Vec<String> = vec![self.chromosome[0].to_owned()];
-        let mut new_position: Vec<u64> = vec![self.position[0]];
-        let mut new_allele: Vec<String> = vec![self.allele[0].to_owned()];
-        let i = 0;
-        for j in idx.clone().into_iter() {
-            // Use the indexes of the locus to set missing values to all alleles in the locus
-            let idx_ini = loci_idx_ini[j];
-            let idx_fin = loci_idx_fin[j];
-            for k in idx_ini..idx_fin {
-                vec_intercept_and_allele_frequencies_pool_0
-                    .push(self.intercept_and_allele_frequencies[(i, k)]);
-                new_chromosome.push(self.chromosome[k].to_owned());
-                new_position.push(self.position[k]);
-                new_allele.push(self.allele[k].to_owned());
-            }
-        }
-        // Populate the intercept and allele frequencies matrix
-        let p = vec_intercept_and_allele_frequencies_pool_0.len(); // includes the intercept
-        let mut new_intercept_and_allele_frequencies = Array2::from_elem((n, p), f64::NAN);
-        let mut new_coverages = Array2::from_elem((n, l_after_filtering), f64::NAN);
-        for i in 0..n {
-            let mut k_new = 1; // Start at the second index after the intercept
-            for j in 0..l_after_filtering {
-                // Intercept
-                new_intercept_and_allele_frequencies[(i, 0)] = 1.0;
-                let j_ = idx[j];
-                let idx_ini = loci_idx_ini[j_];
-                let idx_fin = loci_idx_fin[j_];
-                for k in 0..(idx_fin - idx_ini) {
-                    let k_old = idx_ini + k;
-                    new_intercept_and_allele_frequencies[(i, k_new)] =
-                        self.intercept_and_allele_frequencies[(i, k_old)];
-                    k_new += 1;
-                }
-                // Coverages
-                new_coverages[(i, j)] = self.coverages[(i, j_)];
-            }
-        }
-        self.chromosome = new_chromosome;
-        self.position = new_position;
-        self.allele = new_allele;
-        self.intercept_and_allele_frequencies = new_intercept_and_allele_frequencies;
-        self.coverages = new_coverages;
-        // println!("self={:?}", self);
-        // println!("self.chromosome.len()={:?}", self.chromosome.len());
-        // println!("self.position.len()={:?}", self.position.len());
-        // println!("self.allele.len()={:?}", self.allele.len());
-        // println!("self.intercept_and_allele_frequencies.dim()={:?}", self.intercept_and_allele_frequencies.dim());
-        // println!("self.coverages.len()={:?}", self.coverages.dim());
-        self.check().expect("Error calling check() method within filter_out_top_missing_loci() method for GenotypesAndPhenotypes struct.");
-        Ok(self)
-    }
-}
-
-////////////////////////////////////////////////////////////////////////////////////////////////////////////
-#[cfg(test)]
-mod tests {
-    use super::*;
-    #[test]
-    fn test_filtering_missing() {
-        let file_sync = FileSync {
-            filename: "./tests/test.sync".to_owned(),
-            test: "load".to_owned(),
-        };
-        let file_phen = FilePhen {
-            filename: "./tests/test_pheno.csv".to_owned(),
-            delim: ",".to_owned(),
-            names_column_id: 0,
-            sizes_column_id: 1,
-            trait_values_column_ids: vec![2, 3],
-            format: "default".to_owned(),
-        };
-        let file_sync_phen = *(file_sync, file_phen).lparse().unwrap();
-        ////////////////////////////////////////////////////////////////////////////////////////////////////////
-        ////////////////////////////////////////////////////////////////////////////////////////////////////////
-        ////////////////////////////////////////////////////////////////////////////////////////////////////////
-        // NOTE: MAKE SURE THAT FilterStats is set to no filtering except by zero frequency alleles as in below:
-        //       AND THAT WE KEEP ALL NON-ZERO ALLELES ACROSS ALL ENTRIES!
-        ////////////////////////////////////////////////////////////////////////////////////////////////////////
-        ////////////////////////////////////////////////////////////////////////////////////////////////////////
-        ////////////////////////////////////////////////////////////////////////////////////////////////////////
-        let filter_stats = FilterStats {
-            remove_ns: false,
-            min_quality: 1.0,
-            min_coverage: 0,
-            min_allele_frequency: 0.000001,
-            max_missingness_rate: 0.0,
-            pool_sizes: vec![20., 20., 20., 20., 20.],
-        };
-        let n_threads = 2;
-        let mut frequencies_and_phenotypes = file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &n_threads)
-            .unwrap();
-        let min_depth_below_which_are_missing = 5.0;
-        let max_depth_above_which_are_missing = 100.0;
-        frequencies_and_phenotypes
-            .set_missing_by_depth(
-                &min_depth_below_which_are_missing,
-                &max_depth_above_which_are_missing,
-            )
-            .unwrap();
-        // println!("frequencies_and_phenotypes={:?}", frequencies_and_phenotypes);
-        println!(
-            "frequencies_and_phenotypes.chromosome[0..5]={:?}",
-            &frequencies_and_phenotypes.chromosome[0..5]
-        );
-        println!(
-            "frequencies_and_phenotypes.position[0..5]={:?}",
-            &frequencies_and_phenotypes.position[0..5]
-        );
-        println!(
-            "frequencies_and_phenotypes.allele[0..5]={:?}",
-            &frequencies_and_phenotypes.allele[0..5]
-        );
-        println!(
-            "frequencies_and_phenotypes.intercept_and_allele_frequencies={:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        println!(
-            "frequencies_and_phenotypes.coverages={:?}",
-            frequencies_and_phenotypes.coverages
-        );
-        assert!(frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 1)].is_nan());
-        assert_eq!(
-            frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 4)],
-            1.0 / 21.0
-        );
-        assert_eq!(
-            frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 13)],
-            2.0 / 10.0
-        );
-        assert!(frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 18)].is_nan());
-        assert!(frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 18)].is_nan());
-
-        println!("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@");
-        println!("Before filtering out pools");
-        println!(
-            "frequencies_and_phenotypes.intercept_and_allele_frequencies:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        println!(
-            "frequencies_and_phenotypes.coverages:\n{:?}",
-            frequencies_and_phenotypes.coverages
-        );
-        frequencies_and_phenotypes
-            .filter_out_top_missing_pools(&0.20)
-            .unwrap();
-        assert_eq!(
-            frequencies_and_phenotypes
-                .intercept_and_allele_frequencies
-                .nrows(),
-            4
-        );
-        println!("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@");
-        println!("After filtering out pools but before filtering out loci");
-        println!(
-            "frequencies_and_phenotypes.intercept_and_allele_frequencies:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        println!(
-            "frequencies_and_phenotypes.coverages:\n{:?}",
-            frequencies_and_phenotypes.coverages
-        );
-        frequencies_and_phenotypes
-            .filter_out_top_missing_loci(&1.00)
-            .unwrap();
-        assert_eq!(
-            frequencies_and_phenotypes
-                .intercept_and_allele_frequencies
-                .ncols(),
-            7637
-        );
-        println!("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@");
-        println!("After filtering out pools and loci");
-        println!(
-            "frequencies_and_phenotypes.intercept_and_allele_frequencies:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        println!(
-            "frequencies_and_phenotypes.coverages:\n{:?}",
-            frequencies_and_phenotypes.coverages
-        );
-        // assert_eq!(0, 1);
-    }
-}
diff --git a/src/rust/src/geno.rs b/src/rust/src/geno.rs
deleted file mode 100644
index 9d340c3..0000000
--- a/src/rust/src/geno.rs
+++ /dev/null
@@ -1,387 +0,0 @@
-use ndarray::prelude::*;
-use std::fs::File;
-use std::io::{self, prelude::*, BufReader, Error, ErrorKind, SeekFrom};
-use std::str;
-use std::sync::{Arc, Mutex};
-
-use crate::helpers::*;
-use crate::structs_and_traits::*;
-
-impl Parse<LocusFrequencies> for String {
-    fn lparse(&self) -> io::Result<Box<LocusFrequencies>> {
-        // Ignore commented-out lines (i.e. '#' => 35)
-        if self.as_bytes()[0] == 35_u8 {
-            return Err(Error::new(ErrorKind::Other, "Commented out line"));
-        }
-        let vec_line: Vec<&str> = self.split('\t').collect();
-        let vec_line: Vec<&str> = if vec_line.len() == 1 {
-            self.split(',').collect()
-        } else {
-            vec_line
-        };
-        let vec_line: Vec<&str> = if vec_line.len() == 1 {
-            self.split(';').collect()
-        } else {
-            vec_line
-        };
-        // println!("vec_line={:?}", vec_line);
-        let l = vec_line.len();
-        let n = l - 3;
-        let chromosome: String = vec_line[0].to_owned();
-        let position = match vec_line[1].parse::<u64>() {
-            Ok(x) => x,
-            Err(_) => {
-                return Err(Error::new(
-                    ErrorKind::Other,
-                    "Please check format of the file: position is not and integer.",
-                ))
-            }
-        };
-        let alleles_vector: Vec<String> = vec![vec_line[2].to_owned()];
-        let matrix: Array2<f64> = Array2::from_shape_vec(
-            (n, 1),
-            vec_line[3..l]
-                .iter()
-                .map(|x| {
-                    match x.parse::<f64>() {
-                        Ok(x) => x,
-                        Err(_) => f64::NAN,
-                    }
-                })
-                .collect::<Vec<f64>>(),
-        )
-        .expect("Error parsing the allele frequency table text file within the lparse() method for parsing String into LocusFrequencies struct.");
-        let freq_line = LocusFrequencies {
-            chromosome,
-            position,
-            alleles_vector,
-            matrix,
-        };
-        // println!("freq_line={:?}", freq_line);
-        Ok(Box::new(freq_line))
-    }
-}
-
-impl LoadAll for FileGeno {
-    fn per_chunk_load(
-        &self,
-        start: &u64,
-        end: &u64,
-        _filter_stats: &FilterStats,
-        _keep_p_minus_1: bool,
-    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)> {
-        // Input syn file
-        let fname = self.filename.clone();
-        // Prepare output vectors
-        let mut freq: Vec<LocusFrequencies> = Vec::new();
-        let cnts: Vec<LocusCounts> = Vec::new(); // Empty and will remain empty as each line corresponds to just an allele of a locus
-                                                 // Input file chunk
-        let file = File::open(fname.clone()).expect("Error opening the allele frequency table text file within the per_chunk_load() method for FileGeno struct.");
-        let mut reader = BufReader::new(file);
-        // Navigate to the start of the chunk
-        let mut i: u64 = *start;
-        reader.seek(SeekFrom::Start(*start)).expect("Error navigating across the allele frequency table text file within the per_chunk_load() method for FileGeno struct.");
-        // Read and parse until the end of the chunk
-        while i < *end {
-            // Instantiate the line
-            let mut line = String::new();
-            // Read the line which automatically moves the cursor position to the next line
-            let _ = reader.read_line(&mut line).expect("Error reading the allele frequency table text file within the per_chunk_load() method for FileGeno struct.");
-            // Find the new cursor position
-            i = reader.stream_position().expect("Error navigating across the allele frequency table text file within the per_chunk_load() method for FileGeno struct.");
-            // Remove trailing newline character in Unix-like (\n) and Windows (\r)
-            if line.ends_with('\n') {
-                line.pop();
-                if line.ends_with('\r') {
-                    line.pop();
-                }
-            }
-            // Parse the geno line
-            let allele_freqs: LocusFrequencies = match line.lparse() {
-                Ok(x) => *x,
-                Err(x) => match x.kind() {
-                    ErrorKind::Other => continue,
-                    _ => {
-                        return Err(Error::new(
-                            ErrorKind::Other,
-                            "T_T Input sync file error, i.e. '".to_owned()
-                                + &fname
-                                + "' at line with the first 20 characters as: "
-                                + &line[0..20]
-                                + ".",
-                        ))
-                    }
-                },
-            };
-            freq.push(allele_freqs);
-        }
-        Ok((freq, cnts))
-    }
-
-    fn load(
-        &self,
-        filter_stats: &FilterStats,
-        keep_p_minus_1: bool,
-        n_threads: &usize,
-    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)> {
-        let fname = self.filename.clone();
-        // Find the positions whereto split the file into n_threads pieces
-        let chunks = find_file_splits(&fname, n_threads).expect("Error splitting the allele frequency table file format given the number of threads suppplied within load() method for FileGeno struct.");
-        let n_threads = chunks.len() - 1;
-        println!("Chunks: {:?}", chunks);
-        // Tuple arguments of pileup2sync_chunks
-        // Instantiate thread object for parallel execution
-        let mut thread_objects = Vec::new();
-        // Vector holding all returns from pileup2sync_chunk()
-        let thread_ouputs_freq: Arc<Mutex<Vec<LocusFrequencies>>> =
-            Arc::new(Mutex::new(Vec::new())); // Mutated within each thread worker
-        let thread_ouputs_cnts: Arc<Mutex<Vec<LocusCounts>>> = Arc::new(Mutex::new(Vec::new())); // Mutated within each thread worker
-                                                                                                 // Making four separate threads calling the `search_for_word` function
-        for i in 0..n_threads {
-            // Clone pileup2sync_chunk parameters
-            let self_clone = self.clone();
-            let start = chunks[i];
-            let end = chunks[i + 1];
-            let filter_stats = filter_stats.clone();
-            let thread_ouputs_freq_clone = thread_ouputs_freq.clone(); // Mutated within the current thread worker
-            let thread_ouputs_cnts_clone = thread_ouputs_cnts.clone(); // Mutated within the current thread worker
-            let thread = std::thread::spawn(move || {
-                let (mut freq, mut cnts) = self_clone
-                    .per_chunk_load(&start, &end, &filter_stats, keep_p_minus_1)
-                    .expect(
-                        "Error calling per_chunk_load() within load() method for FileGeno struct.",
-                    );
-                thread_ouputs_freq_clone
-                    .lock()
-                    .expect("Thread error within load() method for FileGeno struct.")
-                    .append(&mut freq);
-                thread_ouputs_cnts_clone
-                    .lock()
-                    .expect("Thread error within load() method for FileGeno struct.")
-                    .append(&mut cnts);
-            });
-            thread_objects.push(thread);
-        }
-        // Waiting for all threads to finish
-        for thread in thread_objects {
-            thread.join().expect("Unknown thread error occured.");
-        }
-        // Extract output filenames from each thread into a vector and sort them
-        let mut freq: Vec<LocusFrequencies> = Vec::new();
-        let cnts: Vec<LocusCounts> = Vec::new(); // Empty and will remain empty as each line corresponds to just an allele of a locus
-        for x in thread_ouputs_freq.lock().expect("Error unlocking the threads after multi-threaded execution of per_chunk_load() within load() method for FileGeno struct.").iter() {
-            freq.push(x.clone());
-        }
-        freq.sort_by(|a, b| {
-            a.chromosome
-                .cmp(&b.chromosome)
-                .then(a.position.cmp(&b.position))
-        });
-        Ok((freq, cnts))
-    }
-
-    fn convert_into_genotypes_and_phenotypes(
-        &self,
-        filter_stats: &FilterStats,
-        keep_p_minus_1: bool,
-        n_threads: &usize,
-    ) -> io::Result<GenotypesAndPhenotypes> {
-        // No filtering! Just loading the allele frequency data
-        // Extract pool names
-        let file: File = File::open(self.filename.clone()).expect("Error opening the allele frequency table text file within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.");
-        let reader = io::BufReader::new(file);
-        let mut header: String = match reader.lines().next() {
-            Some(x) => x.expect("Error reading the allele frequency table text file within the convert_into_genotypes_and_phenotypes() method for FileGeno struct."),
-            None => return Err(Error::new(ErrorKind::Other, "No header line found.")),
-        };
-        if header.ends_with('\n') {
-            header.pop();
-            if header.ends_with('\r') {
-                header.pop();
-            }
-        }
-        let vec_header: Vec<&str> = header.split('\t').collect();
-        let vec_header: Vec<&str> = if vec_header.len() == 1 {
-            header.split(',').collect()
-        } else {
-            vec_header
-        };
-        let vec_header: Vec<&str> = if vec_header.len() == 1 {
-            header.split(';').collect()
-        } else {
-            vec_header
-        };
-
-        let pool_names: Vec<String> = vec_header[3..vec_header.len()]
-            .iter()
-            .map(|&x| x.to_owned())
-            .collect();
-        // Load allele frequencies
-        let (freqs, _cnts) = self.load(filter_stats, keep_p_minus_1, n_threads).expect("Error calling load() within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.");
-        let n = freqs[0].matrix.nrows();
-        assert_eq!(
-            n,
-            pool_names.len(),
-            "Header names and allele frequency data does not have the same number of samples."
-        );
-        let mut p = freqs.len(); // total number of alleles across all loci
-        p += 1; // include the intercept
-        let mut chromosome: Vec<String> = Vec::with_capacity(p);
-        chromosome.push("intercept".to_owned());
-        let mut position: Vec<u64> = Vec::with_capacity(p);
-        position.push(0);
-        let mut allele: Vec<String> = Vec::with_capacity(p);
-        allele.push("intercept".to_owned());
-        // Populate the GenotypeAndPhenotypes struct fields
-        let mut l: usize = 0; // loci counter
-        let mut mat: Array2<f64> = Array2::from_elem((n, p), 1.0);
-        // Count the number of loci (Note: assumes the loci are sorted) and extract the loci coordinates
-        let mut loci_idx: Vec<usize> = vec![];
-        let mut loci_chr: Vec<String> = vec![];
-        let mut loci_pos: Vec<u64> = vec![];
-        for j in 1..p {
-            let f = &freqs[j - 1];
-            chromosome.push(f.chromosome.clone());
-            position.push(f.position);
-            allele.push(f.alleles_vector[0].clone());
-            if (chromosome[j - 1] != chromosome[j]) || (position[j - 1] != position[j]) {
-                l += 1;
-                loci_idx.push(j);
-                loci_chr.push(chromosome[j].to_owned());
-                loci_pos.push(position[j]);
-            }
-            for i in 0..n {
-                mat[(i, j)] = f.matrix[(i, 0)];
-            }
-        }
-        // Add the last allele of the last locus
-        loci_idx.push(p);
-        loci_chr.push(chromosome.last().expect("Error push chromosome within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.").to_owned());
-        loci_pos.push(position.last().expect("Error push position within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.").to_owned());
-        // Add alternative alleles if the allele frequencies per locus do not add up to 1.00 (~or if only one allele per locus is present~)
-        // Count how many allele we have to add
-        for j in 0..l {
-            let idx_ini = loci_idx[j];
-            let idx_fin = loci_idx[j + 1];
-            let _n_alleles = idx_fin - idx_ini;
-            let mut freq_sum_less_than_one = false;
-            for i in 0..n {
-                if mat.slice(s![i, idx_ini..idx_fin]).sum() < 1.0 {
-                    freq_sum_less_than_one = true;
-                    break;
-                }
-            }
-            // if (n_alleles == 1) || freq_sum_less_than_one {
-            if freq_sum_less_than_one {
-                p += 1;
-            }
-        }
-        let mut chromosome_new: Vec<String> = Vec::with_capacity(p);
-        chromosome_new.push("intercept".to_owned());
-        let mut position_new: Vec<u64> = Vec::with_capacity(p);
-        position_new.push(0);
-        let mut allele_new: Vec<String> = Vec::with_capacity(p);
-        allele_new.push("intercept".to_owned());
-        let mut mat_new: Array2<f64> = Array2::from_elem((n, p), 1.0);
-        let mut j = 1;
-        for j_orig in 0..l {
-            let idx_ini = loci_idx[j_orig];
-            let idx_fin = loci_idx[j_orig + 1];
-            let n_alleles = idx_fin - idx_ini;
-            // println!("j={}; j_orig={}; idx_ini={}; idx_fin={}; n_alleles={}", j, j_orig, idx_ini, idx_fin, n_alleles);
-            for a in idx_ini..idx_fin {
-                chromosome_new.push(chromosome[a].to_owned());
-                position_new.push(position[a]);
-                allele_new.push(allele[a].to_owned());
-                for i in 0..n {
-                    mat_new[(i, j)] = mat[(i, a)];
-                }
-                j += 1;
-            }
-            let mut freq_sum_less_than_one = false;
-            for i in 0..n {
-                if mat.slice(s![i, idx_ini..idx_fin]).sum() < 1.0 {
-                    freq_sum_less_than_one = true;
-                    break;
-                }
-            }
-            if (n_alleles == 1) || freq_sum_less_than_one {
-                chromosome_new.push(chromosome[idx_ini].to_owned());
-                position_new.push(position[idx_ini]);
-                allele_new.push("U".to_owned()); // unknown alternative allele
-                for i in 0..n {
-                    let alt = 1.00 - mat.slice(s![i, idx_ini..idx_fin]).sum();
-                    mat_new[(i, j)] = alt;
-                }
-                j += 1;
-            }
-        }
-        Ok(GenotypesAndPhenotypes {
-            chromosome: chromosome_new,
-            position: position_new,
-            allele: allele_new,
-            intercept_and_allele_frequencies: mat_new,
-            phenotypes: Array2::from_shape_vec((n, 1), vec![f64::NAN; n]).expect("Error generating dummy phenotype data within the convert_into_genotypes_and_phenotypes() method for FileGeno struct."),
-            pool_names,
-            coverages: Array2::from_elem((n, l), 1_000.0),
-        })
-    }
-}
-
-#[cfg(test)]
-mod tests {
-    use super::*;
-    #[test]
-    fn test_geno() {
-        let line: String = "chr_1\t12345\tA\t0.25\t0.1\t0.9\t0.45\t0.9\t0.85".to_owned();
-        let _genotypes_and_phenotypes: LocusFrequencies = *line.lparse().unwrap();
-
-        let file_geno = FileGeno {
-            filename: "tests/test.txt".to_owned(),
-        };
-        let filter_stats = FilterStats {
-            remove_ns: true,
-            min_quality: 0.005,
-            min_coverage: 1,
-            min_allele_frequency: 0.005,
-            max_missingness_rate: 0.0,
-            pool_sizes: vec![20., 20., 20., 20., 20.],
-        };
-        let n_threads = 8;
-
-        let genotypes_and_phenotype = file_geno
-            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &n_threads)
-            .unwrap();
-        // println!("genotypes_and_phenotype={:?}", genotypes_and_phenotype);
-        assert!(
-            genotypes_and_phenotype.pool_names
-                == vec![
-                    "G1".to_owned(),
-                    "G2".to_owned(),
-                    "G3".to_owned(),
-                    "G5".to_owned()
-                ]
-        );
-        assert!(genotypes_and_phenotype.chromosome[0] == "intercept".to_owned());
-        assert!(genotypes_and_phenotype.chromosome[1] == "Chromosome1".to_owned());
-        assert!(genotypes_and_phenotype.chromosome[2] == "Chromosome1".to_owned());
-        assert!(genotypes_and_phenotype.chromosome[3] == "Chromosome1".to_owned());
-        assert!(genotypes_and_phenotype.chromosome[4] == "Chromosome1".to_owned());
-        assert!(genotypes_and_phenotype.position[0] == 0);
-        assert!(genotypes_and_phenotype.position[1] == 456527);
-        assert!(genotypes_and_phenotype.position[2] == 456527);
-        assert!(genotypes_and_phenotype.position[3] == 1133215);
-        assert!(genotypes_and_phenotype.position[4] == 1133215);
-        assert!(genotypes_and_phenotype.allele[0] == "intercept".to_owned());
-        assert!(genotypes_and_phenotype.allele[1] == "T".to_owned());
-        assert!(genotypes_and_phenotype.allele[2] == "C".to_owned());
-        assert!(genotypes_and_phenotype.allele[3] == "A".to_owned());
-        assert!(genotypes_and_phenotype.allele[4] == "C".to_owned());
-        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(0, 0)] == 1.00);
-        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(0, 1)] == 0.238095);
-        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(0, 2)] == 0.761905);
-        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(1, 3)] == 0.0);
-        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(2, 4)] == 1.0);
-        // assert!(0 == 1);
-    }
-}
diff --git a/src/rust/src/helpers.rs b/src/rust/src/helpers.rs
deleted file mode 100644
index 1bf8c99..0000000
--- a/src/rust/src/helpers.rs
+++ /dev/null
@@ -1,257 +0,0 @@
-//! Helper functions including parallel selective matrix multiplication and pseudo-inverse via singular value decomposition
-
-use ndarray::prelude::*;
-
-use statrs::distribution::{ContinuousCDF, StudentsT};
-
-use std::fs::File;
-use std::io::{self, prelude::*, BufReader, SeekFrom};
-use std::io::{Error, ErrorKind};
-
-// use crate::structs_and_traits::*;
-
-/// Find the start position of the next line given the current position,`pos`.
-/// Positions are coded as the nth UTF8 character count in the file counting the newline characters at the end of each line.
-/// This is used in file splitting to allocate a chunk of the file to a single thread for parallel processing.
-fn find_start_of_next_line(fname: &str, pos: u64) -> u64 {
-    let mut out = pos;
-    if out > 0 {
-        let mut file = File::open(fname).expect("Error opening file.");
-        let _ = file.seek(SeekFrom::Start(out));
-        let mut reader = BufReader::new(file);
-        let mut line = String::new();
-        let _ = reader.read_line(&mut line).expect("Error reading file.");
-        out = reader.stream_position().expect("Error navigating file.");
-    }
-    out
-}
-
-/// Detect the cursor positions across the input file corresponding to the splits for parallel computation
-pub fn find_file_splits(fname: &str, n_threads: &usize) -> io::Result<Vec<u64>> {
-    let mut file = match File::open(fname) {
-        Ok(x) => x,
-        Err(_) => return Err(Error::new(ErrorKind::Other, "The input file: ".to_owned() + fname + " does not exist. Please make sure you are entering the correct filename and/or the correct path.")),
-    };
-    let _ = file.seek(SeekFrom::End(0));
-    let mut reader = BufReader::new(file);
-    let end = reader.stream_position().expect("Error navigating file.");
-    let mut out = (0..end)
-        .step_by((end as usize) / n_threads)
-        .collect::<Vec<u64>>();
-    out.push(end);
-    for x in &mut out {
-        *x = find_start_of_next_line(fname, x.to_owned());
-    }
-    out.dedup();
-    Ok(out)
-}
-
-/// Round-up an `f64` to `n_digits` decimal points
-pub fn sensible_round(x: f64, n_digits: usize) -> f64 {
-    let factor = ("1e".to_owned() + &n_digits.to_string())
-        .parse::<f64>()
-        .expect("Error parsing String into f64.");
-    (x * factor).round() / factor
-}
-
-/// Round-up an `f64` to `n_digits` decimal points and cast into a `String`
-pub fn parse_f64_roundup_and_own(x: f64, n_digits: usize) -> String {
-    let s = x.to_string();
-    if s.len() < n_digits {
-        return s;
-    }
-    sensible_round(x, n_digits).to_string()
-}
-
-/// Calculate the mean of a 1D array ignoring NaN
-pub fn mean_array1_ignore_nan(
-    x: &ArrayBase<ndarray::ViewRepr<&f64>, Dim<[usize; 1]>>,
-) -> io::Result<f64> {
-    // let sum = x.fold(0.0, |sum, &a| if a.is_nan() { sum } else { sum + a });
-    // let counts = x.iter().filter(|&a| !a.is_nan()).count() as f64;
-    // Ok(sum / counts)
-    let mut sum = 0.0;
-    let mut n = 0.0;
-    for &x in x.iter() {
-        if !x.is_nan() {
-            sum += x;
-            n += 1.0;
-        }
-    }
-    Ok(sum / n)
-}
-
-/// Calculate the axis-wise means of an array while ignoring NaN
-pub fn mean_axis_ignore_nan<D>(
-    a: &Array<f64, D>,
-    axis: usize,
-) -> io::Result<Array<f64, <D>::Smaller>>
-where
-    D: ndarray::Dimension + ndarray::RemoveAxis,
-{
-    let sum: Array<f64, <D>::Smaller> =
-        a.fold_axis(
-            Axis(axis),
-            0.0,
-            |&sum, &x| {
-                if x.is_nan() {
-                    sum
-                } else {
-                    sum + x
-                }
-            },
-        );
-    let n: Array<f64, <D>::Smaller> = a.map_axis(Axis(axis), |x| {
-        x.iter().filter(|&&y| !y.is_nan()).count() as f64
-    });
-    let out: Array<f64, <D>::Smaller> = sum / n;
-    Ok(out)
-}
-
-// Pearson's product moment correlation using only complete data across pair of vectors
-pub fn pearsons_correlation_pairwise_complete(
-    x: &ArrayBase<ndarray::ViewRepr<&f64>, Dim<[usize; 1]>>,
-    y: &ArrayBase<ndarray::ViewRepr<&f64>, Dim<[usize; 1]>>,
-) -> io::Result<(f64, f64)> {
-    let n = x.len();
-    if n != y.len() {
-        return Err(Error::new(
-            ErrorKind::Other,
-            "Input vectors are not the same size.",
-        ));
-    }
-    // Using pairs of values with non-missing data across the pair of vectors
-    // Note that this may result in unreasonable correlations is used for a matrix, i.e. column vectors may be comparing different sets of rows
-    let filtered_vectors: (Vec<f64>, Vec<f64>) = x
-        .iter()
-        .zip(y.iter())
-        .filter(|&(&x, &y)| (!x.is_nan()) && (!y.is_nan()))
-        .unzip();
-    // println!("q.0={:?}; q.1={:?}", q.0, q.1);
-    let x = Array1::from_vec(filtered_vectors.0);
-    let y = Array1::from_vec(filtered_vectors.1);
-    // Make sure we are handling NAN properly
-    let mu_x = mean_array1_ignore_nan(&x.view())
-        .expect("Error calculating the mean of x while ignoring NANs.");
-    let mu_y = mean_array1_ignore_nan(&y.view())
-        .expect("Error calculating the mean of y while ignoring NANs.");
-    let x_less_mu_x = x
-        .iter()
-        .filter(|&x| !x.is_nan())
-        .map(|x| x - mu_x)
-        .collect::<Array1<f64>>();
-    let y_less_mu_y = y
-        .iter()
-        .filter(|&y| !y.is_nan())
-        .map(|y| y - mu_y)
-        .collect::<Array1<f64>>();
-    let x_less_mu_x_squared = x_less_mu_x.map(|x| x.powf(2.0));
-    let y_less_mu_y_squared = y_less_mu_y.map(|y| y.powf(2.0));
-    let numerator = (x_less_mu_x * y_less_mu_y).sum();
-    let denominator = x_less_mu_x_squared.sum().sqrt() * y_less_mu_y_squared.sum().sqrt();
-    let r_tmp = numerator / denominator;
-    let r = match r_tmp.is_nan() {
-        true => {
-            if numerator == 0.0 {
-                0.0
-            } else {
-                return Ok((f64::NAN, f64::NAN));
-            }
-        }
-        false => r_tmp,
-    };
-    let sigma_r_denominator = (1.0 - r.powf(2.0)) / (n as f64 - 2.0);
-    if sigma_r_denominator <= 0.0 {
-        // Essentially no variance in r2, hence very significant
-        return Ok((r, f64::EPSILON));
-    }
-    let sigma_r = sigma_r_denominator.sqrt();
-    let t = r / sigma_r;
-    let pval = if n > 2 {
-        let d = StudentsT::new(0.0, 1.0, n as f64 - 2.0)
-            .expect("Error defining Student's t-distribution.");
-        2.00 * (1.00 - d.cdf(t.abs()))
-    } else {
-        f64::NAN
-    };
-    Ok((sensible_round(r, 7), pval))
-}
-
-////////////////////////////////////////////////////////////////////////////////////////////////////////////
-#[cfg(test)]
-mod tests {
-    // Note this useful idiom: importing names from outer (for mod tests) scope.
-    use super::*;
-    #[test]
-    fn test_helpers() {
-        if cfg!(windows) {
-            assert_eq!(
-                find_start_of_next_line(&"./tests/test.pileup".to_owned(), 56),
-                58
-            ); // line 1 has a total of 57 characters in windows and only 56 in unix, so the next line should start at the 58th character position
-        } else {
-            assert_eq!(
-                find_start_of_next_line(&"./tests/test.pileup".to_owned(), 56),
-                57
-            ); // 56th character is the newline character as line 1 has a total of 56 characters, so the next line should start at the 57th character position
-        }
-        assert_eq!(
-            find_file_splits(&"./tests/test.pileup".to_owned(), &2)
-                .unwrap()
-                .len(),
-            3
-        );
-        assert_eq!(sensible_round(0.420000012435, 4), 0.42);
-        assert_eq!(
-            parse_f64_roundup_and_own(0.690000012435, 4),
-            "0.69".to_owned()
-        );
-        let _a: Array2<f64> =
-            Array2::from_shape_vec((5, 3), (0..15).map(|x| x as f64).collect::<Vec<f64>>())
-                .unwrap();
-        let _b: Array2<f64> = Array2::from_shape_vec(
-            (5, 3),
-            (0..15).map(|x| x as f64 / 2.0).collect::<Vec<f64>>(),
-        )
-        .unwrap();
-        let _idx_w3: Vec<usize> = vec![1, 3, 4];
-        let _idx_x2: Vec<usize> = vec![0, 2];
-        let _idx_y2: Vec<usize> = vec![1, 3];
-        let _idx_z2: Vec<usize> = vec![0, 1];
-
-        let array1d: Array1<f64> = Array1::from_vec(vec![0.1, 0.2, 0.3, f64::NAN, 0.5]);
-        assert_eq!(mean_array1_ignore_nan(&array1d.view()).unwrap(), 0.275);
-        let mut array2d: Array2<f64> =
-            Array2::from_shape_vec((2, 5), (0..10).map(|x| x as f64).collect::<Vec<f64>>())
-                .unwrap();
-        array2d[(0, 0)] = f64::NAN;
-        println!("array2d={:?}", array2d);
-        assert_eq!(
-            Array1::from_shape_vec(5, vec![5.0, 3.5, 4.5, 5.5, 6.5]).unwrap(),
-            mean_axis_ignore_nan(&array2d, 0).unwrap()
-        );
-        assert_eq!(
-            Array1::from_shape_vec(2, vec![2.5, 7.0]).unwrap(),
-            mean_axis_ignore_nan(&array2d, 1).unwrap()
-        );
-        let _fname = "./tests/test.csv".to_owned();
-        let _delimiter = ",".to_owned();
-        let _chr_col = 0;
-        let _pos_start_col = 1;
-        let _pos_end_col = 1;
-        let _data_start_col = 2;
-        let _data_end_col = 6;
-
-        let x = Array1::from_vec(vec![0.1, 0.2, 0.3, 0.4, 0.5]);
-        let y = Array1::from_vec(vec![0.2, 0.4, 0.6, 0.8, 1.0]);
-        let z = Array1::from_vec(vec![0.0, 0.1, 0.0, 0.1, 0.0]);
-        let corr1 = pearsons_correlation_pairwise_complete(&x.view(), &y.view()).unwrap();
-        let corr2 = pearsons_correlation_pairwise_complete(&x.view(), &z.view()).unwrap();
-        println!("corr1={:?}", corr1);
-        println!("corr2={:?}", corr2);
-        assert!(corr1.0 == 1.00);
-        assert!(corr1.1 < 0.0001);
-        assert!(corr2.0 == 0.00);
-        assert!(corr2.1 == 1.00);
-    }
-}
diff --git a/src/rust/src/lib.rs b/src/rust/src/lib.rs
deleted file mode 100644
index 51f7e19..0000000
--- a/src/rust/src/lib.rs
+++ /dev/null
@@ -1,360 +0,0 @@
-use extendr_api::prelude::*;
-use ndarray::prelude::*;
-use rand::Rng;
-use std::fs::File;
-use std::io::{self, prelude::*, BufReader};
-
-mod aldknni;
-mod filter_missing;
-mod geno;
-mod helpers;
-mod mvi;
-mod phen;
-mod structs_and_traits;
-mod sync;
-mod vcf;
-use crate::aldknni::*;
-use crate::mvi::*;
-use crate::structs_and_traits::*;
-use crate::vcf::*;
-
-#[extendr]
-#[allow(clippy::too_many_arguments)]
-fn impute(
-    fname: String,
-    imputation_method: String,
-    min_coverage: u64,
-    min_allele_frequency: f64,
-    max_missingness_rate_per_locus: f64,
-    pool_sizes: Vec<f64>,
-    min_depth_below_which_are_missing: f64,
-    max_depth_above_which_are_missing: f64,
-    frac_top_missing_pools: f64,
-    frac_top_missing_loci: f64,
-    n_reps: u64,
-    min_loci_corr: f64,
-    max_pool_dist: f64,
-    min_l_loci: u64,
-    min_k_neighbours: u64,
-    restrict_linked_loci_per_chromosome: bool,
-    n_threads: u64,
-    fname_out_prefix: String,
-    // ) -> String {
-) -> Robj {
-    // Identify the format of the input file
-    // 1) vcf - richest (*.vcf)
-    // 2) sync - intermediate richness and most preferred (*.sync)
-    // 3) geno - least detailed - tab-delimited: chr,pos,allele,sample-1,sample-2,some-name-@#@#$%^&*(+)}:<'?"-with-a-bunch-of-asci-characters,... (*.txt)
-    let extension_name: &str = fname
-        .split('.')
-        .collect::<Vec<&str>>()
-        .last()
-        .expect("Error extracting the last character of the input filename in impute().");
-    println!("##################################################");
-    if extension_name == "vcf" {
-        println!("Input uncompressed vcf file:\n{:?}", fname);
-    } else if extension_name == "sync" {
-        println!("Input sync file:\n{:?}", fname);
-    } else {
-        println!("Input csv file:\n{:?}", fname);
-    }
-    println!(
-        "Minimum coverage per locus across pools:\n{:?}",
-        min_coverage
-    );
-    println!("Minimum allele frequency:\n{:?}", min_allele_frequency);
-    println!(
-        "Maximum fraction of pools missing at each locus:\n{:?}",
-        max_missingness_rate_per_locus
-    );
-    println!("Pool sizes:\n{:?}", pool_sizes);
-    println!(
-        "Number of threads to use for parallel processing:\n{:?}",
-        n_threads
-    );
-    // Create a random ID by concatenating the time in seconds with some trailing random numbers for extra safe write-outs (extra safe because Rust will complain if the file which we want to write on already exists)
-    let time = std::time::SystemTime::now()
-        .duration_since(std::time::UNIX_EPOCH)
-        .expect("Error extracting time in UNIX_EPOCH within impute().")
-        .as_secs_f64();
-    let mut rng = rand::thread_rng();
-    let num = rng.gen::<u32>();
-    let rand_id = time.to_string() + "." + &num.to_string();
-    println!("rand_id={:?}", rand_id);
-    // Prepare filtering variables
-    let mut filter_stats = FilterStats {
-        remove_ns: true,
-        min_quality: 0.01, // for pileups only (i.e. minimum base error rate)
-        min_coverage,
-        min_allele_frequency,
-        max_missingness_rate: max_missingness_rate_per_locus,
-        pool_sizes: pool_sizes.clone(),
-    };
-    let keep_p_minus_1 = false;
-    // Load genotype data
-    let mut genotypes_and_phenotypes: GenotypesAndPhenotypes = if extension_name == "vcf" {
-        // Extract pool names from the vcf file
-        let mut pool_names: Vec<String> = vec![];
-        let file = File::open(fname.clone()).expect("Error opening the input vcf file.");
-        let reader = BufReader::new(file);
-        for l in reader.lines() {
-            let mut line = l.expect("Error reading the input vcf file.");
-            // Remove trailing newline character in Unix-like (\n) and Windows (\r)
-            if line.ends_with('\n') {
-                line.pop();
-                if line.ends_with('\r') {
-                    line.pop();
-                }
-            }
-            let vec_line: Vec<&str> = line.split('\t').collect();
-            if vec_line[0] == "#CHROM" {
-                pool_names = vec_line[9..vec_line.len()]
-                    .iter()
-                    .map(|&x| x.to_owned())
-                    .collect();
-                break;
-            }
-        }
-        let n = pool_names.len();
-        // If a single pool size was supplied then we are assuming the same sizes across all pools
-        let pool_sizes = if pool_sizes.len() == 1 {
-            vec![pool_sizes[0]; n]
-        } else {
-            pool_sizes
-        };
-        filter_stats.pool_sizes = pool_sizes;
-        // Convert vcf into sync
-        let file_vcf = FileVcf {
-            filename: fname.to_owned(),
-        };
-        let fname_sync_out = if fname_out_prefix == *"" {
-            fname.to_owned() + "-" + &rand_id + ".sync"
-        } else {
-            fname_out_prefix.to_owned() + "-" + &rand_id + ".sync"
-        };
-        let _ = file_vcf
-            .read_analyse_write(
-                &filter_stats,
-                &fname_sync_out,
-                &(n_threads as usize),
-                vcf_to_sync,
-            )
-            .expect("Error converting the vcf into sync via read_analyse_write() method within impute().");
-        // Initialise dummy phen struct (for other poolgen analyses)
-        let file_sync_phen = FileSyncPhen {
-            filename_sync: fname_sync_out.to_owned(),
-            pool_names,
-            pool_sizes: filter_stats.pool_sizes.clone(),
-            phen_matrix: Array2::from_elem((n, 1), f64::NAN),
-            test: "".to_owned(),
-        };
-        file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, keep_p_minus_1, &(n_threads as usize))
-            .expect("Error parsing the input genotype (converted from vcf into sync) and dummy phenotype data via convert_into_genotypes_and_phenotypes() method within impute().")
-    } else if extension_name == "sync" {
-        // Extract pool names from the sync file
-        let mut pool_names: Vec<String> = vec![];
-        let file = File::open(fname.clone()).expect("Error reading the input vcf file.");
-        let reader = BufReader::new(file);
-        for l in reader.lines() {
-            let mut line = l.expect("Error reading the input sync file.");
-            // Remove trailing newline character in Unix-like (\n) and Windows (\r)
-            if line.ends_with('\n') {
-                line.pop();
-                if line.ends_with('\r') {
-                    line.pop();
-                }
-            }
-            let vec_line: Vec<&str> = line.split('\t').collect();
-            if vec_line[0] == "#chr" {
-                pool_names = vec_line[3..vec_line.len()]
-                    .iter()
-                    .map(|&x| x.to_owned())
-                    .collect();
-                break;
-            }
-        }
-        let n = pool_names.len();
-        // If a single pool size was supplied then we are assuming the same sizes across all pools
-        let pool_sizes = if pool_sizes.len() == 1 {
-            vec![pool_sizes[0]; n]
-        } else {
-            pool_sizes
-        };
-        filter_stats.pool_sizes = pool_sizes;
-        // Initialise dummy phen struct (for other poolgen analyses)
-        let file_sync_phen = FileSyncPhen {
-            filename_sync: fname.to_owned(),
-            pool_names,
-            pool_sizes: filter_stats.pool_sizes.clone(),
-            phen_matrix: Array2::from_elem((n, 1), f64::NAN),
-            test: "".to_owned(),
-        };
-        file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, keep_p_minus_1, &(n_threads as usize))
-            .expect("Error parsing the genotype (sync format) and dummy phenotype data via convert_into_genotypes_and_phenotypes() method within impute().")
-    } else {
-        // Extract pool names from the txt file
-        let file: File =
-            File::open(fname.clone()).expect("Error reading the allele frequency table file.");
-        let reader = io::BufReader::new(file);
-        let mut header: String = reader
-            .lines()
-            .next()
-            .expect("Error reading the allele frequency table file.")
-            .expect("Please check the format of the allele frequency table text file.");
-        if header.ends_with('\n') {
-            header.pop();
-            if header.ends_with('\r') {
-                header.pop();
-            }
-        }
-        let vec_header: Vec<&str> = header.split('\t').collect();
-        let vec_header: Vec<&str> = if vec_header.len() == 1 {
-            header.split(',').collect()
-        } else {
-            vec_header
-        };
-        let vec_header: Vec<&str> = if vec_header.len() == 1 {
-            header.split(';').collect()
-        } else {
-            vec_header
-        };
-        let pool_names: Vec<String> = vec_header[3..vec_header.len()]
-            .iter()
-            .map(|&x| x.to_owned())
-            .collect();
-        let n = pool_names.len();
-        // If a single pool size was supplied then we are assuming the same sizes across all pools
-        let pool_sizes = if pool_sizes.len() == 1 {
-            vec![pool_sizes[0]; n]
-        } else {
-            pool_sizes
-        };
-        let file_geno = FileGeno {
-            filename: fname.clone(),
-        };
-        filter_stats.pool_sizes = pool_sizes;
-        file_geno
-            .convert_into_genotypes_and_phenotypes(&filter_stats, keep_p_minus_1, &(n_threads as usize))
-            .expect("Error parsing the genotype data (extracted from allele frequency table text file) via convert_into_genotypes_and_phenotypes() method within impute().")
-    };
-    // println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
-    // Define missing data
-    let start = std::time::SystemTime::now();
-    genotypes_and_phenotypes
-        .set_missing_by_depth(
-            &min_depth_below_which_are_missing,
-            &max_depth_above_which_are_missing,
-        )
-        .expect("Error calling set_missing_by_depth() method within impute().");
-    let end = std::time::SystemTime::now();
-    let duration = end
-        .duration_since(start)
-        .expect("Error measuring the duration of setting missing data within impute().");
-    println!(
-        "Set loci beyond the minimum and maximum depth thresholds to missing: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
-        genotypes_and_phenotypes.coverages.nrows(),
-        genotypes_and_phenotypes.coverages.ncols(),
-        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity via missing_rate() method after setting missing by depth within impute()."),
-        duration.as_secs()
-    );
-    // Filter pools
-    let start = std::time::SystemTime::now();
-    genotypes_and_phenotypes
-        .filter_out_top_missing_pools(&frac_top_missing_pools)
-        .expect("Error filtering out top-most missing pools within impute().");
-    let end = std::time::SystemTime::now();
-    let duration = end
-        .duration_since(start)
-        .expect("Error measuring the duration of filtering pools within impute().");
-    println!(
-        "Filtered out sparsest pools: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
-        genotypes_and_phenotypes.coverages.nrows(),
-        genotypes_and_phenotypes.coverages.ncols(),
-        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity via missing_rate() method after filtering pools within impute()."),
-        duration.as_secs()
-    );
-    // Filter loci
-    let start = std::time::SystemTime::now();
-    genotypes_and_phenotypes
-        .filter_out_top_missing_loci(&frac_top_missing_loci)
-        .expect("Error filtering out top-most missing loci within impute().");
-    let end = std::time::SystemTime::now();
-    let duration = end
-        .duration_since(start)
-        .expect("Error measuring the duration of filtering loci within impute().");
-    println!(
-        "Filtered out sparsest loci: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
-        genotypes_and_phenotypes.coverages.nrows(),
-        genotypes_and_phenotypes.coverages.ncols(),
-        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity via missing_rate() method after filtering loci within impute()."),
-        duration.as_secs()
-    );
-    // Prepare output file name
-    let fname_out = if fname_out_prefix == *"" {
-        fname.to_owned() + "-" + &rand_id + "-IMPUTED.csv"
-    } else {
-        fname_out_prefix.to_owned() + "-" + &rand_id + "-IMPUTED.csv"
-    };
-    let _ = if imputation_method == *"mean" {
-        println!("###################################################################################################");
-        println!("mvi: mean value imputation");
-        println!("###################################################################################################");
-        impute_mean(
-            genotypes_and_phenotypes,
-            &filter_stats,
-            &(n_threads as usize),
-            &fname_out,
-        )
-        .expect("Error performing mean value imputation via impute_mean() within impute().")
-    } else {
-        println!("###################################################################################################");
-        println!("aldknni: adaptive linkage disequilibrium (LD)-based k-nearest neighbour imputation of genotype data");
-        println!("###################################################################################################");
-        // Handling NA conversion into Rust's f64:NAN
-        let min_loci_corr = if min_loci_corr < 0.0 {
-            f64::NAN
-        } else {
-            min_loci_corr
-        };
-        let max_pool_dist = if max_pool_dist < 0.0 {
-            f64::NAN
-        } else {
-            max_pool_dist
-        };
-        impute_aldknni(
-            genotypes_and_phenotypes,
-            &filter_stats,
-            (
-                &min_loci_corr,
-                &max_pool_dist,
-                &(min_l_loci as usize),
-                &(min_k_neighbours as usize),
-                &(n_reps as usize),
-            ),
-            restrict_linked_loci_per_chromosome,
-            &(n_threads as usize),
-            &fname_out,
-        )
-        .expect("Error performing adaptive LD-kNN imputation via impute_aldknni() within impute().")
-    };
-    r!(fname_out.to_owned())
-    // fname_out.to_owned()
-}
-
-// Macro to generate exports.
-// This ensures exported functions are registered with R.
-// See corresponding C code in `entrypoint.c`.
-extendr_module! {
-    mod imputef;
-    fn impute;
-}
-
-// Format, fix and ask clippy:
-// ```shell
-// cargo fmt
-// cargo fix --allow-dirty
-// cargo clippy
-// ```
-// Test in R: `time Rscript imputef/tests/tests.R`
diff --git a/src/rust/src/mvi.rs b/src/rust/src/mvi.rs
deleted file mode 100644
index aa9ae50..0000000
--- a/src/rust/src/mvi.rs
+++ /dev/null
@@ -1,407 +0,0 @@
-use crate::helpers::*;
-use crate::structs_and_traits::*;
-use ndarray::prelude::*;
-use rand::prelude::IteratorRandom;
-use rand::rngs::StdRng;
-use rand::SeedableRng;
-use std::io;
-
-type SparsitySimulationOutput = (f64, Vec<usize>, Vec<f64>, Vec<Vec<f64>>);
-
-impl GenotypesAndPhenotypes {
-    pub fn mean_imputation(&mut self) -> io::Result<&mut Self> {
-        self.check().expect("Error calling check() method within mean_imputation() method for GenotypesAndPhenotypes struct.");
-        // We are assuming that all non-zero alleles across pools are kept, i.e. biallelic loci have 2 columns, triallelic have 3, and so on.
-        let (n, p) = self.intercept_and_allele_frequencies.dim();
-        let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error defining loci indexes and identities via count_loci() method within mean_imputation() method for GenotypesAndPhenotypes struct.");
-        let l = loci_idx.len() - 1; // less the final position, this is equivalent to the the number of columns of self.coverages
-        for j in 0..l {
-            // Use the indexes of each locus
-            let idx_ini = loci_idx[j];
-            let idx_fin = if j < (l - 1) { loci_idx[j + 1] } else { p };
-            let freqs: Array2<f64> = self
-                .intercept_and_allele_frequencies
-                .slice(s![.., idx_ini..idx_fin])
-                .to_owned();
-            let mean_freqs = mean_axis_ignore_nan(&freqs, 0).expect("Error calculating axis-wise mean ignoring NANs within mean_imputation() method for GenotypesAndPhenotypes struct.");
-            let sum_freqs = mean_freqs.sum();
-            // We need to correct for imputations resulting in a sum of allele frequencies greater or less than 1
-            let mean_freqs = if sum_freqs != 1.0 {
-                mean_freqs.map(|x| x / sum_freqs)
-            } else {
-                mean_freqs
-            };
-            for k in 0..freqs.ncols() {
-                for i in 0..n {
-                    if self.intercept_and_allele_frequencies[(i, idx_ini + k)].is_nan() {
-                        self.intercept_and_allele_frequencies[(i, idx_ini + k)] = mean_freqs[k];
-                    } else {
-                        continue;
-                    };
-                }
-            }
-        }
-        // Set missing coverages to infinity to mark imputed data
-        for j in 0..self.coverages.ncols() {
-            // Mark only the imputed loci, i.e. loci which were not completely missing across all pools
-            let n_non_missing = self.coverages.select(Axis(1), &[j]).fold(0, |sum, &x| {
-                if !x.is_nan() {
-                    sum + 1
-                } else {
-                    sum
-                }
-            });
-            if n_non_missing > 0 {
-                for i in 0..self.coverages.nrows() {
-                    if self.coverages[(i, j)].is_nan() {
-                        self.coverages[(i, j)] = f64::INFINITY
-                    };
-                }
-            }
-        }
-        // println!("self.coverages = {:?}", self.coverages);
-        Ok(self)
-    }
-
-    pub fn simulate_missing(
-        &mut self,
-        loci_idx: &[usize],
-        max_sparsity: &f64,
-        rep: &usize,
-    ) -> io::Result<(&mut Self, SparsitySimulationOutput)> {
-        self.check().expect("Error calling check() method within simulate_missing() method for GenotypesAndPhenotypes struct.");
-        let (n, l) = self.coverages.dim();
-        // let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error defining loci indexes and identities via count_loci() method within simulate_missing() method for GenotypesAndPhenotypes struct.");
-        // Limit max_sparsity to 90%
-        let max_sparsity = if *max_sparsity > 0.9 {
-            0.9
-        } else {
-            *max_sparsity
-        };
-        // Define the number of loci to mask
-        let n_masked = (((n * l) as f64) * max_sparsity).floor() as usize;
-        // Sample random loci
-        // let mut rng = rand::thread_rng();
-        let mut rng = StdRng::seed_from_u64(*rep as u64);
-        let mut vec_masked_loci_idx_tmp = (0..(n * l)).choose_multiple(&mut rng, n_masked);
-        vec_masked_loci_idx_tmp.sort();
-        // Mask and extract the masked information
-        let mut vec_masked_loci_idx: Vec<usize> = vec![];
-        let mut vec_masked_coverages: Vec<f64> = vec![];
-        let mut vec_vec_masked_alleles_freqs: Vec<Vec<f64>> = vec![];
-        let mut idx_counter = 0;
-        let mut idx = 0;
-        'outer: for i in 0..n {
-            for j in 0..l {
-                if vec_masked_loci_idx_tmp[idx_counter] == idx {
-                    if !self.coverages[(i, j)].is_nan() {
-                        // Extract index of the locus
-                        vec_masked_loci_idx.push(idx);
-                        // Extract mask the coverages
-                        vec_masked_coverages.push(self.coverages[(i, j)]);
-                        self.coverages[(i, j)] = f64::NAN;
-                        // Use the indexes of the locus extract masked frequencies and to set missing values to all alleles in the locus
-                        let idx_ini = loci_idx[j];
-                        let idx_fin = loci_idx[j + 1];
-                        let mut vec_freqs: Vec<f64> = vec![];
-                        for k in idx_ini..idx_fin {
-                            vec_freqs.push(self.intercept_and_allele_frequencies[(i, k)]);
-                            self.intercept_and_allele_frequencies[(i, k)] = f64::NAN;
-                        }
-                        vec_vec_masked_alleles_freqs.push(vec_freqs);
-                    }
-                    idx_counter += 1;
-                    if idx_counter == vec_masked_loci_idx_tmp.len() {
-                        break 'outer;
-                    }
-                }
-                idx += 1;
-            }
-        }
-        self.check().expect("Error calling check() method within simulate_missing() method for GenotypesAndPhenotypes struct.");
-        Ok((
-            self,
-            (
-                max_sparsity,
-                vec_masked_loci_idx,
-                vec_masked_coverages,
-                vec_vec_masked_alleles_freqs,
-            ),
-        ))
-    }
-
-    pub fn extract_imputed_mask(
-        &self,
-        loci_idx: &[usize],
-        vec_masked_loci_idx: &[usize],
-    ) -> io::Result<Vec<Vec<f64>>> {
-        let (n, _p) = self.intercept_and_allele_frequencies.dim();
-        let (_n, l) = self.coverages.dim();
-        let mut vec_vec_imputed_mask: Vec<Vec<f64>> = vec![];
-        let mut idx_counter = 0;
-        let mut idx = 0;
-        'outer: for i in 0..n {
-            for j in 0..l {
-                if vec_masked_loci_idx[idx_counter] == idx {
-                    let idx_ini = loci_idx[j];
-                    let idx_fin = loci_idx[j + 1];
-                    let mut vec_freqs: Vec<f64> = vec![];
-                    for k in idx_ini..idx_fin {
-                        vec_freqs.push(self.intercept_and_allele_frequencies[(i, k)]);
-                    }
-                    vec_vec_imputed_mask.push(vec_freqs);
-                    idx_counter += 1;
-                    if idx_counter == vec_masked_loci_idx.len() {
-                        break 'outer;
-                    }
-                }
-                idx += 1;
-            }
-        }
-        Ok(vec_vec_imputed_mask)
-    }
-
-    pub fn estimate_expected_mae_in_mvi(&self) -> io::Result<f64> {
-        let mut genotype_data_for_optimisation = self.clone();
-        let (n, p) = genotype_data_for_optimisation
-            .intercept_and_allele_frequencies
-            .dim();
-        let missing_rate_sim = if (n * p) < 20_000 {
-            0.01
-        } else {
-            10_000.0 / ((n * p) as f64)
-        };
-        // Extract loci indices
-        let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error calling count_loci() method within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes struct.");
-        let (
-            _,
-            (max_sparsity,
-            vec_masked_loci_idx,
-            _vec_masked_coverages,
-            vec_vec_masked_alleles_freqs),
-        ) = genotype_data_for_optimisation
-            .simulate_missing(&loci_idx, &missing_rate_sim, &0)
-            .expect("Error calling simulate_missing() within estimate_expected_mae_in_mvi() method for GenotypesAndPhenotypes struct.");
-        assert_eq!(
-            max_sparsity, missing_rate_sim,
-            "Ooops! Missing unexpected simulated sparsity!"
-        );
-        let _ = genotype_data_for_optimisation.mean_imputation().expect("Error calling mean_imputation() within estimate_expected_mae_in_mvi() method for GenotypesAndPhenotypes struct.");
-        let vec_vec_imputed_mask = genotype_data_for_optimisation
-            .extract_imputed_mask(&loci_idx, &vec_masked_loci_idx)
-            .expect("Error calling extract_imputed_mask() within estimate_expected_mae_in_mvi() method for GenotypesAndPhenotypes struct.");
-        // Compare imputed and expected frequencies
-        let m = vec_vec_masked_alleles_freqs.len(); // total number of loci
-        let mean_absolute_error = if m == 0 {
-            // If no loci were simulated to be missing
-            1.00
-        } else {
-            let mut sum_abs = 0.0;
-            let mut a = 0.0; // total number of alleles across all loci
-            for i in 0..m {
-                let w = vec_vec_masked_alleles_freqs[i].len();
-                for j in 0..w {
-                    if (vec_vec_masked_alleles_freqs[i][j].is_nan())
-                        || (vec_vec_imputed_mask[i][j].is_nan())
-                    {
-                        // Skip if we if masked already missing loci or if we cannot impute because the whole locus is missing
-                        continue;
-                    } else {
-                        sum_abs +=
-                            (vec_vec_masked_alleles_freqs[i][j] - vec_vec_imputed_mask[i][j]).abs();
-                        // (vec_vec_masked_alleles_freqs[i][j] - vec_vec_imputed_mask[i][j]).powf(2.0); // MSE seem to have the same behaviour as MAE
-                        a += 1.00;
-                    }
-                }
-            }
-            if a == 0.0 {
-                1.00
-            } else {
-                sum_abs / a
-            }
-        };
-        Ok(mean_absolute_error)
-    }
-}
-
-// Impute using mean allele frequencies across pools
-pub fn impute_mean(
-    mut genotypes_and_phenotypes: GenotypesAndPhenotypes,
-    filter_stats: &FilterStats,
-    n_threads: &usize,
-    out: &str,
-) -> io::Result<String> {
-    // Estimate predicted imputation accuracy
-    let mae = genotypes_and_phenotypes
-        .estimate_expected_mae_in_mvi()
-        .expect("Error calling estimate_expected_mae_in_mvi() method within impute_mean().");
-    println!("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-    println!(
-        "Expected imputation accuracy in terms of mean absolute error: {}",
-        mae
-    );
-    println!("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
-    let start = std::time::SystemTime::now();
-    genotypes_and_phenotypes
-        .mean_imputation()
-        .expect("Error calling mean_imputation() method within impute_mean().");
-    let end = std::time::SystemTime::now();
-    let duration = end
-        .duration_since(start)
-        .expect("Error measuring the duration of mean value imputation within impute_mean()");
-    println!(
-        "Mean value imputation: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
-        genotypes_and_phenotypes.coverages.nrows(),
-        genotypes_and_phenotypes.coverages.ncols(),
-        genotypes_and_phenotypes
-            .missing_rate()
-            .expect("Error measuring sparsity after mean value imputation within impute_mean()."),
-        duration.as_secs()
-    );
-
-    // println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
-
-    // Remove 100% of the loci with missing data
-    let start = std::time::SystemTime::now();
-    genotypes_and_phenotypes
-        .filter_out_top_missing_loci(&1.00)
-        .expect("Error calling filter_out_top_missing_loci() method within impute_mean().");
-    let end = std::time::SystemTime::now();
-    let duration = end.duration_since(start).expect(
-        "Error measuring the duration of filter_out_top_missing_loci() within impute_mean()",
-    );
-    println!(
-        "Missing data removed, i.e. loci which cannot be imputed because of extreme sparsity: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
-        genotypes_and_phenotypes.coverages.nrows(),
-        genotypes_and_phenotypes.coverages.ncols(),
-        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity after filter_out_top_missing_loci(0) within impute_mean()."),
-        duration.as_secs()
-    );
-    // Output
-    let out = genotypes_and_phenotypes
-        .write_csv(filter_stats, false, out, n_threads)
-        .expect("Error writing the output of mean value imputation within impute_mean().");
-
-    Ok(out)
-}
-
-////////////////////////////////////////////////////////////////////////////////////////////////////////////
-#[cfg(test)]
-mod tests {
-    use super::*;
-    #[test]
-    fn test_mvi() {
-        let file_sync = FileSync {
-            filename: "./tests/test.sync".to_owned(),
-            test: "load".to_owned(),
-        };
-        let file_phen = FilePhen {
-            filename: "./tests/test_pheno.csv".to_owned(),
-            delim: ",".to_owned(),
-            names_column_id: 0,
-            sizes_column_id: 1,
-            trait_values_column_ids: vec![2, 3],
-            format: "default".to_owned(),
-        };
-        let file_sync_phen = *(file_sync, file_phen).lparse().unwrap();
-        let filter_stats = FilterStats {
-            remove_ns: true,
-            min_quality: 0.005,
-            min_coverage: 1,
-            min_allele_frequency: 0.005,
-            max_missingness_rate: 0.0,
-            pool_sizes: vec![20., 20., 20., 20., 20.],
-        };
-        let n_threads = 2;
-        let mut frequencies_and_phenotypes = file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &n_threads)
-            .unwrap();
-        println!(
-            "Before simulating missing data:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        let min_depth_below_which_are_missing = 5.0;
-        let max_depth_above_which_are_missing = 10.0;
-        let _ = frequencies_and_phenotypes
-            .set_missing_by_depth(
-                &min_depth_below_which_are_missing,
-                &max_depth_above_which_are_missing,
-            )
-            .unwrap();
-        println!(
-            "Before imputation:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-        let _ = frequencies_and_phenotypes.mean_imputation().unwrap();
-        println!(
-            "After imputation:\n{:?}",
-            frequencies_and_phenotypes.intercept_and_allele_frequencies
-        );
-
-        let keep_p_minus_1 = false;
-        let _start = std::time::SystemTime::now();
-        let genotypes_and_phenotypes = file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, keep_p_minus_1, &n_threads)
-            .unwrap();
-
-        let outname = impute_mean(
-            genotypes_and_phenotypes,
-            &filter_stats,
-            &n_threads,
-            &"test-impute_mean.csv".to_owned(),
-        )
-        .unwrap();
-        assert_eq!(outname, "test-impute_mean.csv".to_owned()); // Do better!!! Load data - thus working on improving load_table()
-
-        assert_eq!(
-            frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 1)],
-            Array1::from_vec(vec![0.3333333333333333, 0.2, 0.14285714285714285])
-                .mean()
-                .unwrap()
-        );
-        assert_eq!(
-            frequencies_and_phenotypes.intercept_and_allele_frequencies[(1, 1)],
-            Array1::from_vec(vec![0.3333333333333333, 0.2, 0.14285714285714285])
-                .mean()
-                .unwrap()
-        );
-        assert_eq!(
-            frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 2)],
-            Array1::from_vec(vec![0.6666666666666666, 0.8, 0.8571428571428571])
-                .mean()
-                .unwrap()
-        );
-        assert_eq!(
-            frequencies_and_phenotypes.intercept_and_allele_frequencies[(1, 2)],
-            Array1::from_vec(vec![0.6666666666666666, 0.8, 0.8571428571428571])
-                .mean()
-                .unwrap()
-        );
-        // assert_eq!(0, 1);
-    }
-}
-
-// SYNC=/home/jeff/poolgen/tests/test_REMOVE_ME_BEFORE_PUSHING.sync
-// PHEN=/home/jeff/poolgen/tests/test_REMOVE_ME_BEFORE_PUSHING.csv
-// NCORES=7
-// OUT=/home/jeff/poolgen/tests/test-MEAN_IMPUTE-REMOVE_ME_BEFORE_PUSHING.csv
-// time cargo run -- impute \
-//     --imputation-method "mean" \
-//     -f ${SYNC} \
-//     -p ${PHEN} \
-//     --phen-delim , \
-//     --phen-name-col 0 \
-//     --phen-pool-size-col 1 \
-//     --phen-value-col 2 \
-//     --min-allele-frequency 0.0001 \
-//     --min-coverage 0 \
-//     --min-quality 0.01 \
-//     --max-missingness-rate 0.75 \
-//     --min-depth-set-to-missing 5 \
-//     --window-size-bp 1000000 \
-//     --window-slide-size-bp 1000000 \
-//     --min-loci-per-window 1 \
-//     --min-correlation 0.5 \
-//     --k-neighbours 5 \
-//     --n-threads ${NCORES} \
-//     -o ${OUT}
diff --git a/src/rust/src/phen.rs b/src/rust/src/phen.rs
deleted file mode 100644
index 9a6d2d8..0000000
--- a/src/rust/src/phen.rs
+++ /dev/null
@@ -1,256 +0,0 @@
-//! Phenotype data parsing from simple delimited files (e.g. csv and tsv) and [GWAlpha.py's Python-esq data structure](https://github.com/aflevel/GWAlpha)
-
-use ndarray::prelude::*;
-use std::fs::File;
-use std::io::{self, prelude::*, BufReader, Error, ErrorKind};
-use std::{str, vec};
-
-use crate::structs_and_traits::*;
-
-impl Parse<Phen> for FilePhen {
-    /// Parse a phenotype file into `Phen` struct containing the `pool_names`, `pool_sizes`, and `phen_matrix`
-    /// Phenotype file formats:
-    /// 1. A simple delimited file (e.g. `csv` and `tsv` extensions) with a column for the individual IDs, and at least one column for the phenotypic values. Header line/s and comments should be prepended by `#`.
-    /// 2. GWAlpha-compatible text file (i.e. `py` extension):
-    /// - *Line 1*: phenotype name
-    /// - *Line 2*: standard deviation of the phenotype across pools or for the entire population
-    /// - *Line 3*: minimum phenotype value
-    /// - *Line 4*: maximum phenotype value
-    /// - *Line 5*: cummulative pool sizes percentiles (e.g. `0.2,0.4,0.6,0.8,1.0`)
-    /// - *Line 6*: phenotype values corresponding to each percentile (e.g. `0.16,0.20,0.23,0.27,0.42`)
-    fn lparse(&self) -> io::Result<Box<Phen>> {
-        let mut pool_names: Vec<String> = vec![];
-        let mut pool_sizes: Vec<f64> = vec![];
-        if self.format == *"default" {
-            ////////////////////
-            // Default format //
-            ////////////////////
-            let filename_phen = self.filename.clone();
-            let delim = self.delim.clone();
-            let names_column_id = self.names_column_id;
-            let sizes_column_id = self.sizes_column_id;
-            let trait_values_column_ids = self.trait_values_column_ids.clone();
-            let k = trait_values_column_ids.len();
-            let mut phen_vec: Vec<f64> = vec![];
-            let file = File::open(filename_phen.clone())
-                .expect(&("Input phenotype file not found: ".to_owned() + &filename_phen[..]));
-            let reader = BufReader::new(file);
-            for l in reader.lines() {
-                let mut line = l.expect("Error parsing the phenotype file within the lparse() method for the FilePhen struct.");
-                // Remove trailing newline character in Unix-like (\n) and Windows (\r)
-                if line.ends_with('\n') {
-                    line.pop();
-                    if line.ends_with('\r') {
-                        line.pop();
-                    }
-                }
-                // Ignore commented-out lines (i.e. '#' => 35)
-                if line.as_bytes()[0] == 35_u8 {
-                    continue;
-                }
-                // Parse the sync line
-                let vec_line = line
-                    .split(&delim[..])
-                    .collect::<Vec<&str>>()
-                    .into_iter()
-                    .map(|x| x.trim()) // remove pesky leading and trailing whitespace
-                    .map(|x| x.to_owned())
-                    .collect::<Vec<String>>();
-                pool_names.push(vec_line[names_column_id].clone());
-                pool_sizes.push(vec_line[sizes_column_id].parse::<f64>().expect(
-                    &("T_T Pool sizes column (column index: ".to_owned()
-                        + &sizes_column_id.to_string()
-                        + ") is not a valid number. Line: "
-                        + &line
-                        + "."),
-                ));
-                for j in 0..k {
-                    if (vec_line[trait_values_column_ids[j]] == *"")
-                        || (vec_line[trait_values_column_ids[j]] == *"NA")
-                        || (vec_line[trait_values_column_ids[j]] == *"NAN")
-                        || (vec_line[trait_values_column_ids[j]] == *"NaN")
-                        || (vec_line[trait_values_column_ids[j]] == *"na")
-                        || (vec_line[trait_values_column_ids[j]] == *"nan")
-                    {
-                        phen_vec.push(f64::NAN)
-                    } else {
-                        phen_vec.push(vec_line[trait_values_column_ids[j]].parse::<f64>()
-                                                            .expect("T_T Error parsing the phenotype file. The trait values specified cannot be casted into float64."))
-                    };
-                }
-            }
-            // Reshape the vector of phenotypes into an nxk matrix
-            let n = phen_vec.len() / k;
-            let mut phen_matrix: Array2<f64> = Array2::from_elem((n, k), 0.0);
-            for i in 0..n {
-                for j in 0..k {
-                    phen_matrix[(i, j)] = phen_vec[(i * k) + j]
-                }
-            }
-            Ok(Box::new(Phen {
-                pool_names,
-                pool_sizes,
-                phen_matrix,
-            }))
-        } else if self.format == *"gwalpha_fmt" {
-            ////////////////////
-            // GWAlpha format //
-            ////////////////////
-            let filename_phen = self.filename.clone();
-            let file = File::open(filename_phen.clone())
-                .expect(&("Input phenotype file not found: ".to_owned() + &filename_phen[..]));
-            let reader = BufReader::new(file);
-            let mut all_lines: Vec<String> = vec![];
-            for line in reader.lines() {
-                all_lines.push(line.expect("T_T Phenotype file in GWAlpha format is missing some lines, e.g. Pheno_name, sig, MIN, MAX, perc and/or q."));
-            }
-            let _name = all_lines[0].split('=').collect::<Vec<&str>>()[1]
-                .replace(';', "")
-                .trim()
-                .to_string();
-            let sig = all_lines[1].split('=').collect::<Vec<&str>>()[1].replace(';', "").trim().parse::<f64>().expect("T_T Error parsing the standard deviation of the trait as f64 in the GWAlpha formatted phenotype file.");
-            let min = all_lines[2].split('=').collect::<Vec<&str>>()[1].replace(';', "").trim().parse::<f64>().expect("T_T Error parsing the minimum value of the trait as f64 in the GWAlpha formatted phenotype file.");
-            let max = all_lines[3].split('=').collect::<Vec<&str>>()[1].replace(';', "").trim().parse::<f64>().expect("T_T Error parsing the maximum value of the trait as f64 in the GWAlpha formatted phenotype file.");
-            let perc = all_lines[4].split('=').collect::<Vec<&str>>()[1].replace([';', '[', ']'], "").trim().to_string()
-                                             .split(',').collect::<Vec<&str>>().into_iter().map(|x| x.trim().to_string())
-                                             .map(|x| x.parse::<f64>().expect("T_T Error parsing the pool percentiles as f64 in the GWAlpha formatted phenotype file."))
-                                             .collect::<Vec<f64>>();
-            let q = all_lines[5].split('=').collect::<Vec<&str>>()[1].replace([';', '[', ']'], "").trim().to_string()
-                                          .split(',').collect::<Vec<&str>>().into_iter().map(|x| x.trim().to_string())
-                                          .map(|x| x.parse::<f64>().expect("T_T Error parsing the pool quantiles as f64 in the GWAlpha formatted phenotype file."))
-                                          .collect::<Vec<f64>>();
-            // For ML
-            let mut _perc0 = perc.clone();
-            _perc0.push(1.0);
-            let perc0: Array1<f64> = Array1::from_vec(_perc0);
-            let mut _perc1 = vec![0.0];
-            _perc1.append(&mut perc.clone());
-            let perc1: Array1<f64> = Array1::from_vec(_perc1);
-            let bins = perc0 - perc1;
-            let mut n = bins.len();
-            if n < 3 {
-                n = 3;
-            }
-            // For LS
-            let mut q_prime: Array1<f64> = Array1::from_elem(n, 0.0);
-            for i in 0..q.len() {
-                q_prime[i + 1] = (q[i] - min) / (max - min);
-            }
-            let mut phen_matrix = Array2::from_elem((n, 3), f64::NEG_INFINITY);
-            for i in 0..bins.len() {
-                phen_matrix[(i, 0)] = bins[i];
-                phen_matrix[(i, 1)] = q_prime[i];
-            }
-            phen_matrix[(0, 2)] = sig;
-            phen_matrix[(1, 2)] = min;
-            phen_matrix[(2, 2)] = max;
-            // Since, GWAlpha's phenotype data does not contain pool names, we will be just naming the pools with consecutive numbers, i.e.:
-            for i in 0..n {
-                pool_names.push("pool-".to_owned() + &i.to_string()[..]);
-            }
-            return Ok(Box::new(Phen {
-                pool_names,
-                pool_sizes: bins.iter().copied().collect::<Vec<f64>>(), // pool sizes, i.e. bins in the GWAlpha.py format is found in phen_matrix
-                phen_matrix,
-            }));
-        } else {
-            return Err(Error::new(
-                ErrorKind::Other,
-                "Invalid phenotype format. Please select: 'default' or 'gwalpha_fmt'",
-            ));
-        }
-    }
-}
-
-impl Parse<FileSyncPhen> for (FileSync, FilePhen) {
-    /// Combine the `Phen` struct with the filename of the genotype file in `sync` format, and include the name of the `test` or analysis to perform
-    fn lparse(&self) -> io::Result<Box<FileSyncPhen>> {
-        let filename_sync = self.0.filename.clone();
-        let test = self.0.test.clone();
-        if self.1.format == *"default" {
-            ////////////////////
-            // Default format //
-            ////////////////////
-            let phen = self.1.lparse().expect("Error calling lparse() within the lparse() method for the (FileSync, FilePhen) struct.");
-            Ok(Box::new(FileSyncPhen {
-                filename_sync,
-                pool_names: phen.pool_names,
-                pool_sizes: phen.pool_sizes,
-                phen_matrix: phen.phen_matrix,
-                test,
-            }))
-        } else if self.1.format == *"gwalpha_fmt" {
-            ////////////////////
-            // GWAlpha format //
-            ////////////////////
-            let phen = self.1.lparse().expect("Error calling lparse() within the lparse() method for the (FileSync, FilePhen) struct.");
-            return Ok(Box::new(FileSyncPhen {
-                filename_sync,
-                pool_names: phen.pool_names,
-                pool_sizes: vec![f64::NAN], // pool sizes, i.e. bins in the GWAlpha.py format is found in phen_matrix
-                phen_matrix: phen.phen_matrix,
-                test,
-            }));
-        } else {
-            return Err(Error::new(
-                ErrorKind::Other,
-                "Invalid phenotype format. Please select: 'default' or 'gwalpha_fmt'",
-            ));
-        }
-    }
-}
-
-////////////////////////////////////////////////////////////////////////////////////////////////////////////
-#[cfg(test)]
-mod tests {
-    use super::*;
-    #[test]
-    fn test_phen() {
-        let file_phen = FilePhen {
-            filename: "./tests/test_pheno.csv".to_owned(),
-            delim: ",".to_owned(),
-            names_column_id: 0,
-            sizes_column_id: 1,
-            trait_values_column_ids: vec![2, 3],
-            format: "default".to_owned(),
-        };
-        assert_eq!(
-            *file_phen.lparse().unwrap(),
-            Phen {
-                pool_names: vec!["G1", "G2", "G3", "G4", "G5"]
-                    .into_iter()
-                    .map(|x| x.to_owned())
-                    .collect::<Vec<String>>(),
-                pool_sizes: vec![20.0, 20.0, 20.0, 20.0, 20.0],
-                phen_matrix: Array2::from_shape_vec(
-                    (2, 5),
-                    vec![0.1, 0.3, 0.5, 0.7, 0.9, 83.2, 75.3, 49.8, 23.9, 12.0],
-                )
-                .unwrap()
-                .reversed_axes(),
-            }
-        );
-        let file_sync = FileSync {
-            filename: "./tests/test.sync".to_owned(),
-            test: "".to_owned(),
-        };
-        assert_eq!(
-            *(file_sync, file_phen).lparse().unwrap(),
-            FileSyncPhen {
-                filename_sync: "./tests/test.sync".to_owned(),
-                pool_names: vec!["G1", "G2", "G3", "G4", "G5"]
-                    .into_iter()
-                    .map(|x| x.to_owned())
-                    .collect::<Vec<String>>(),
-                pool_sizes: vec![20.0, 20.0, 20.0, 20.0, 20.0],
-                phen_matrix: Array2::from_shape_vec(
-                    (2, 5),
-                    vec![0.1, 0.3, 0.5, 0.7, 0.9, 83.2, 75.3, 49.8, 23.9, 12.0],
-                )
-                .unwrap()
-                .reversed_axes(),
-                test: "".to_owned(),
-            }
-        );
-    }
-}
diff --git a/src/rust/src/structs_and_traits.rs b/src/rust/src/structs_and_traits.rs
deleted file mode 100644
index 200fdb9..0000000
--- a/src/rust/src/structs_and_traits.rs
+++ /dev/null
@@ -1,222 +0,0 @@
-//! Structs and Traits
-
-use ndarray::prelude::*;
-use std::io;
-
-////////////////////////////////////////////////////////////////////////////////
-/// # STRUCTS
-////////////////////////////////////////////////////////////////////////////////
-
-/// The alternative entry point genotype file struct, i.e. describing the genotype data in vcf format
-/// Note: Make sure that the annotate the vcf file with allele depths, e.g. `bcftools mpileup -a AD ...`
-/// - `filename` - filename of the vcf file (`*.vcf` or `*.vcf.gz`)
-#[derive(Debug, Clone)]
-pub struct FileVcf {
-    pub filename: String,
-}
-
-/// The main genotype file struct used for most of the analyses
-/// - `filename` - filename of the synchronised pileup file (`*.sync`)
-/// - `test` - name of statistical test, i.e. "sync2csv", "fisher_exact_test", "chisq_test", "fst", "heterozygosity, "pearson_corr", "ols_iter", "ols_iter_with_kinship", "mle_iter", "mle_iter_with_kinship", "gwalpha", "genomic_prediction_cross_validation""
-#[derive(Debug, Clone)]
-pub struct FileSync {
-    pub filename: String,
-    pub test: String,
-}
-
-/// The simple genotype file which is the only output format at the moment
-/// - `filename` - filename of the tab-delimited genotype file (*.txt)
-#[derive(Debug, Clone)]
-pub struct FileGeno {
-    pub filename: String,
-}
-
-/// Filename of the phenotype file which can be a simple delimited file (e.g. csv and tsv) or a specialised GWAlpha phenotype infomation file in a python file.
-/// - `filename` - filename of the phenotype file (e.g. `*.csv`, `*.txt`, `*.tsv`, or `*.py`)
-/// - `delim` - string delimiter of the phenotype file (e.g. `","` or `"\t"`)
-/// - `names_column_id` - index of the column containing the names of the pools or populations
-/// - `sizes_column_id` - index of the column contating the sizes of each pool or population
-/// - `trait_values_column_ids` - vector of indexes corresponding to the column containing the trait values to be included in the analyses (Note that multi-trait analyese may not be available to all analyses types)
-/// - `format` - string defining the format of the phenotype file as `default` for simple delimited file or `gwalpha_fmt` for GWAlpha-required format (for back-compatibility with github.com/aflevel/GWAlpha/GWAlpha.py)
-#[derive(Debug, Clone)]
-pub struct FilePhen {
-    pub filename: String,
-    pub delim: String,
-    pub names_column_id: usize,
-    pub sizes_column_id: usize,
-    pub trait_values_column_ids: Vec<usize>,
-    pub format: String,
-}
-
-/// Phenotype data including the names of the pools, the size of each pool, and the trait values
-#[derive(Debug, Clone, PartialEq)]
-pub struct Phen {
-    pub pool_names: Vec<String>,
-    pub pool_sizes: Vec<f64>,
-    pub phen_matrix: Array2<f64>,
-}
-
-/// Filename of the synchronised pileup file and its corresponding phenotype data
-#[derive(Debug, Clone, PartialEq)]
-pub struct FileSyncPhen {
-    pub filename_sync: String,
-    pub pool_names: Vec<String>,
-    pub pool_sizes: Vec<f64>,
-    pub phen_matrix: Array2<f64>,
-    pub test: String,
-}
-
-/// Locus and allele filtering settings
-#[derive(Debug, Clone)]
-pub struct FilterStats {
-    pub remove_ns: bool,
-    pub min_quality: f64,
-    pub min_coverage: u64,
-    pub min_allele_frequency: f64,
-    pub max_missingness_rate: f64,
-    pub pool_sizes: Vec<f64>,
-}
-
-/// A line of a vcf file corresponding to a single locus across all the pools
-/// We are interested in extracting allele counts.
-/// We are not interested in the genotype calls and their corresponding likelihoods.
-#[derive(Debug, Clone, PartialEq)]
-pub struct VcfLine {
-    pub chromosome: String,             // chromosome or scaffold name
-    pub position: u64,                  // position in number of bases
-    pub reference_allele: char,         // reference allele
-    pub alternative_alleles: Vec<char>, // vector of alternative alleles
-    pub allele_depths: Vec<Vec<u64>>, // across samples average utf8 base quality codes which can be transformed into bases error rate as 10^(-(u8 - 33)/10)
-}
-
-/// Allele counts at a locus across pools
-#[derive(Debug, Clone, PartialEq)]
-pub struct LocusCounts {
-    pub chromosome: String,
-    pub position: u64,
-    pub alleles_vector: Vec<String>,
-    pub matrix: Array2<u64>, // n pools x p alleles
-}
-
-// Struct of allele frequencies to convert reads into syncx
-// #[derive(Debug, Clone, PartialEq, PartialOrd)]
-#[derive(Debug, Clone, PartialEq)]
-pub struct LocusFrequencies {
-    pub chromosome: String,
-    pub position: u64,
-    pub alleles_vector: Vec<String>,
-    pub matrix: Array2<f64>, // n pools x p alleles
-}
-
-// Struct of allele counts and phenotypes per pool
-#[derive(Debug, Clone)]
-pub struct LocusCountsAndPhenotypes {
-    pub locus_counts: LocusCounts,
-    pub phenotypes: Array2<f64>, // n pools x k traits
-    pub pool_names: Vec<String>,
-}
-
-// Struct of allele frequencies and phenotypes for genomic prediction
-#[derive(Debug, Clone)]
-pub struct GenotypesAndPhenotypes {
-    pub chromosome: Vec<String>,                       // 1 + p
-    pub position: Vec<u64>,                            // 1 + p
-    pub allele: Vec<String>,                           // 1 + p
-    pub intercept_and_allele_frequencies: Array2<f64>, // n pools x 1 + p alleles across loci
-    pub phenotypes: Array2<f64>,                       // n pools x k traits
-    pub pool_names: Vec<String>,                       // n
-    pub coverages: Array2<f64>,                        // n pools x m loci
-}
-
-// Struct of parameters chosen to identify linked loci and nearest neighbours
-#[derive(Debug, Clone)]
-pub struct ParametersOfLinkedLociAndNearestNeighbours {
-    pub min_loci_corr: f64,
-    pub max_pool_dist: f64,
-    pub l_linked_loci: f64,
-    pub k_nearest_neighbours: f64,
-}
-
-////////////////////////////////////////////////////////////////////////////////
-/// # TRAITS
-////////////////////////////////////////////////////////////////////////////////
-
-pub trait CheckStruct {
-    fn check(&self) -> io::Result<()>;
-}
-
-pub trait Count {
-    fn count_loci(&self) -> io::Result<(Vec<usize>, Vec<String>, Vec<u64>)>;
-}
-
-pub trait Parse<T> {
-    fn lparse(&self) -> io::Result<Box<T>>;
-}
-
-pub trait Filter {
-    fn to_counts(&self) -> io::Result<Box<LocusCounts>>;
-    fn to_frequencies(&self) -> io::Result<Box<LocusFrequencies>>;
-    fn filter(&mut self, filter_stats: &FilterStats) -> io::Result<&mut Self>;
-}
-
-pub trait Sort {
-    fn sort_by_allele_freq(&mut self, decreasing: bool) -> io::Result<&mut Self>;
-}
-
-pub trait RemoveMissing {
-    fn remove_missing(&mut self) -> io::Result<&mut Self>;
-}
-
-pub trait ChunkyReadAnalyseWrite<T, F> {
-    fn per_chunk(
-        &self,
-        start: &u64,
-        end: &u64,
-        outname_ndigits: &usize,
-        filter_stats: &FilterStats,
-        function: F,
-    ) -> io::Result<String>
-    where
-        F: Fn(&mut T, &FilterStats) -> Option<String>;
-    fn read_analyse_write(
-        &self,
-        filter_stats: &FilterStats,
-        out: &str,
-        n_threads: &usize,
-        function: F,
-    ) -> io::Result<String>
-    where
-        F: Fn(&mut T, &FilterStats) -> Option<String>;
-}
-
-pub trait LoadAll {
-    fn per_chunk_load(
-        &self,
-        start: &u64,
-        end: &u64,
-        filter_stats: &FilterStats,
-        keep_n_minus_1: bool,
-    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)>; // Allele frequencies and counts across pools and alleles per locus
-    fn load(
-        &self,
-        filter_stats: &FilterStats,
-        keep_n_minus_1: bool,
-        n_threads: &usize,
-    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)>; // Allele frequencies and counts across pools and alleles per locus
-    fn convert_into_genotypes_and_phenotypes(
-        &self,
-        filter_stats: &FilterStats,
-        keep_n_minus_1: bool,
-        n_threads: &usize,
-    ) -> io::Result<GenotypesAndPhenotypes>;
-}
-
-pub trait SaveCsv {
-    fn write_csv(
-        &self,
-        filter_stats: &FilterStats,
-        keep_p_minus_1: bool,
-        out: &str,
-        n_threads: &usize,
-    ) -> io::Result<String>;
-}
diff --git a/src/rust/src/sync.rs b/src/rust/src/sync.rs
deleted file mode 100644
index 05343ef..0000000
--- a/src/rust/src/sync.rs
+++ /dev/null
@@ -1,1580 +0,0 @@
-use ndarray::prelude::*;
-use std::fs::{File, OpenOptions};
-use std::io::{self, prelude::*, BufReader, Error, ErrorKind, SeekFrom};
-use std::str;
-use std::sync::{Arc, Mutex};
-use std::time::{SystemTime, UNIX_EPOCH};
-
-use crate::helpers::*;
-use crate::structs_and_traits::*;
-
-impl CheckStruct for LocusCounts {
-    fn check(&self) -> io::Result<()> {
-        let (_n, p) = self.matrix.dim();
-        let a = self.alleles_vector.len();
-        match p == a {
-            true => Ok(()),
-            false => {
-                let locus = [self.chromosome.clone(), self.position.to_string()].join("-");
-                Err(Error::new(ErrorKind::Other, locus + " ::: LocusCounts error: the counts matrix does not have the same the number columns as the number of alleles."))
-            }
-        }
-    }
-}
-
-impl CheckStruct for LocusFrequencies {
-    fn check(&self) -> io::Result<()> {
-        let (_n, p) = self.matrix.dim();
-        let a = self.alleles_vector.len();
-        match p == a {
-            true => Ok(()),
-            false => {
-                let locus = [self.chromosome.clone(), self.position.to_string()].join("-");
-                Err(Error::new(ErrorKind::Other, locus + " ::: LocusFrequencies error: the frequencies matrix does not have the same the number columns as the number of alleles."))
-            }
-        }
-    }
-}
-
-impl CheckStruct for LocusCountsAndPhenotypes {
-    fn check(&self) -> io::Result<()> {
-        self.locus_counts.check().expect("Error checking locus counts within check() method for LocusCountsAndPhenotypes struct.");
-        let (n, _p) = self.locus_counts.matrix.dim();
-        let (n_, _k) = self.phenotypes.dim();
-        let n__ = self.pool_names.len();
-        match (n == n_) && (n_ == n__) {
-            true => Ok(()),
-            false => {
-                let locus = [
-                    self.locus_counts.chromosome.clone(),
-                    self.locus_counts.position.to_string(),
-                ]
-                .join("-");
-                Err(Error::new(ErrorKind::Other, locus + " ::: LocusCountsAndPhenotypes error: the number of pools are inconsistent in the locus counts, and/or phenotypes matrix and/or pool names."))
-            }
-        }
-    }
-}
-
-impl CheckStruct for GenotypesAndPhenotypes {
-    fn check(&self) -> io::Result<()> {
-        let p = self.chromosome.len();
-        let p_ = self.position.len();
-        let (n, p__) = self.intercept_and_allele_frequencies.dim();
-        let (n_, _k) = self.phenotypes.dim();
-        let n__ = self.pool_names.len();
-        let (n___, l) = self.coverages.dim();
-        match (p == p_) && (p_ == p__) && (n == n_) && (n_ == n__) && (n__ == n___) && (l <= p) {
-            true => Ok(()),
-            false => Err(Error::new(ErrorKind::Other, "GenotypesAndPhenotypes: there are at least 1 mismatch in the number of pools and loci."))
-        }
-    }
-}
-
-impl Count for GenotypesAndPhenotypes {
-    fn count_loci(&self) -> io::Result<(Vec<usize>, Vec<String>, Vec<u64>)> {
-        let (_, p) = self.intercept_and_allele_frequencies.dim();
-        assert_eq!(p, self.chromosome.len(), "The number of entries in the 'chromosome' field and the total number of loci are incompatible. Please check the 'intercept_and_allele_frequencies' and 'chromosome' fields of 'GenotypesAndPhenotypes' struct.");
-        assert_eq!(p, self.position.len(), "The number of entries in the 'position' field and the total number of loci are incompatible. Please check the 'intercept_and_allele_frequencies' and 'chromosome' fields of 'GenotypesAndPhenotypes' struct.");
-        // Count the number of loci (Note: assumes the loci are sorted) and extract the loci coordinates
-        let mut loci_idx: Vec<usize> = vec![];
-        let mut loci_chr: Vec<String> = vec![];
-        let mut loci_pos: Vec<u64> = vec![];
-        for i in 1..p {
-            // excludes the intercept
-            if (self.chromosome[i - 1] != self.chromosome[i])
-                || (self.position[i - 1] != self.position[i])
-            {
-                loci_idx.push(i);
-                loci_chr.push(self.chromosome[i].to_owned());
-                loci_pos.push(self.position[i]);
-            }
-        }
-        loci_idx.push(p); // last allele of the last locus
-        loci_chr.push(self.chromosome.last().expect("Error accessing the last element of self.chromosome within the count_loci() method for GenotypesAndPhenotypes struct.").to_owned()); // last allele of the last locus
-        loci_pos.push(self.position.last().expect("Error accessing the last element of self.position within the count_loci() method for GenotypesAndPhenotypes struct.").to_owned()); // last allele of the last locus
-        let l = loci_idx.len();
-        assert_eq!(l-1, self.coverages.ncols(), "The number of loci with coverage information and the total number of loci are incompatible. You may have duplicate loci in the input genotype file (vcf, sync, or txt). Please check the 'intercept_and_allele_frequencies' and 'coverages' fields of 'GenotypesAndPhenotypes' struct.");
-        Ok((loci_idx, loci_chr, loci_pos))
-    }
-}
-
-impl Parse<LocusCounts> for String {
-    // Parse a line of pileup into PileupLine struct
-    fn lparse(&self) -> io::Result<Box<LocusCounts>> {
-        // Remove trailing newline character in Unix-like (\n) and Windows (\r)
-        let mut line = self.clone();
-        if line.ends_with('\n') {
-            line.pop();
-            if line.ends_with('\r') {
-                line.pop();
-            }
-        }
-        // Ignore commented-out lines (i.e. '#' => 35)
-        if line.as_bytes()[0] == 35_u8 {
-            return Err(Error::new(ErrorKind::Other, "Commented out line"));
-        }
-        // Parse the sync line
-        let vec_line = line
-            .split('\t')
-            .collect::<Vec<&str>>()
-            .into_iter()
-            .map(|x| x.to_owned())
-            .collect::<Vec<String>>();
-        let n: usize = vec_line.len() - 3;
-        let p: usize = 6;
-        let chromosome = vec_line[0].to_owned();
-        let position = match vec_line[1].parse::<u64>() {
-            Ok(x) => x,
-            Err(_) => {
-                return Err(Error::new(
-                    ErrorKind::Other,
-                    "Please check format of the file: position is not and integer.",
-                ))
-            }
-        };
-        let alleles_vector = vec!["A", "T", "C", "G", "N", "D"]
-            .into_iter()
-            .map(|x| x.to_owned())
-            .collect::<Vec<String>>();
-        // Read the allele counts into the counts matrix
-        let mut matrix: Array2<u64> = Array2::from_elem((n, p), 0);
-        let mut counts: Vec<u64>;
-        for i in 0..n {
-            counts = vec_line[i+3].split(':')
-                                .map(|x| x.to_string().parse::<u64>().expect("Please check the input sync file as the allele counts are not valid integers."))
-                                .collect::<Vec<u64>>();
-            for j in 0..p {
-                matrix[(i, j)] = counts[j];
-            }
-        }
-        Ok(Box::new(LocusCounts {
-            chromosome,
-            position,
-            alleles_vector,
-            matrix, // n pools x 6 alleles
-        }))
-    }
-}
-
-impl Filter for LocusCounts {
-    // PileupLine to AlleleCounts
-    fn to_counts(&self) -> io::Result<Box<LocusCounts>> {
-        let out = self.clone();
-        Ok(Box::new(out))
-    }
-
-    // PileupLine to AlleleFrequencies
-    fn to_frequencies(&self) -> io::Result<Box<LocusFrequencies>> {
-        let n = self.matrix.nrows();
-        let p = self.matrix.ncols();
-        // let row_sums = self.matrix.sum_axis(Axis(1)); // summation across the columns which means sum of all elements per row
-        let row_sums = self.matrix.map_axis(Axis(1), |r| {
-            r.map(|&x| x as f64)
-                .iter()
-                .filter(|&&x| !x.is_nan())
-                .fold(0.0, |sum, &x| sum + x)
-        }); // summation across the columns which means sum of all elements per row while ignoring NANs!
-        let mut matrix: Array2<f64> = Array2::from_elem((n, p), 0.0_f64);
-        for i in 0..n {
-            for j in 0..p {
-                matrix[(i, j)] = if row_sums[i] == 0.0 {
-                    f64::NAN
-                } else {
-                    self.matrix[(i, j)] as f64 / row_sums[i]
-                };
-            }
-        }
-        Ok(Box::new(LocusFrequencies {
-            chromosome: self.chromosome.clone(),
-            position: self.position,
-            alleles_vector: self.alleles_vector.clone(),
-            matrix,
-        }))
-    }
-
-    // Filter PileupLine by minimum coverage, minimum quality
-    fn filter(&mut self, filter_stats: &FilterStats) -> io::Result<&mut Self> {
-        // Cannot filter by base qualities as this information is lost and we are assuming this has been performed during pileup to sync conversion
-        // Preliminary check of the structure format
-        self.check()
-            .expect("Error calling check() within filter() method for LocusCounts struct.");
-        // Remove Ns
-        if filter_stats.remove_ns {
-            let i = match self
-                .alleles_vector
-                .iter()
-                .position(|x| (x == &"N".to_owned()) || (x == &"n".to_owned()))
-            {
-                Some(x) => x as i32,
-                None => -1,
-            };
-            if i != -1 {
-                self.alleles_vector.remove(i as usize);
-                self.matrix.remove_index(Axis(1), i as usize);
-            }
-        }
-        // println!("self={:?}", self);
-        // Filter by minimum coverage
-        // Summation across the columns which means sum of all elements per row while ignoring NANs!
-        let sum_coverage = self.matrix.map_axis(Axis(1), |r| {
-            r.map(|&x| x as f64)
-                .iter()
-                .filter(|&&x| !x.is_nan())
-                .fold(0.0, |sum, &x| sum + x)
-        });
-        let min_sum_coverage =
-            sum_coverage
-                .iter()
-                .fold(sum_coverage[0], |min, &x| if x < min { x } else { min });
-        if min_sum_coverage < filter_stats.min_coverage as f64 {
-            return Err(Error::new(ErrorKind::Other, "Filtered out."));
-        }
-        // // TODO: convert loci failing the minimum coverage threshold into missing instead of omitting the entire locus
-        // for i in 0..self.matrix.nrows() {
-        //     if sum_coverage[i] < filter_stats.min_coverage as f64 {
-        //         for j in 0..self.matrix.ncols() {
-        //             self.matrix[(i, j)] = f64::NAN as u64;
-        //         }
-        //     }
-        // }
-        // Filter by minimum allele frequency
-        // Before anything else, we clone matrix of allele counts
-        let mut matrix = self.matrix.clone();
-        //// First convert allele counts into frequencies
-        let mut allele_frequencies = match self.to_frequencies() {
-            Ok(x) => x,
-            Err(_) => {
-                return Err(Error::new(
-                    ErrorKind::Other,
-                    "Cannot convert locus counts to locus frequencies.",
-                ))
-            }
-        };
-        //// Next account for pool sizes to get the proper minimum allele frequency across all pools
-        let n = allele_frequencies.matrix.nrows();
-        let mut p = allele_frequencies.matrix.ncols();
-        assert!(
-            n == filter_stats.pool_sizes.len(),
-            "Please make that the number of pools and the pool sizes in FilterStats match."
-        );
-        let mut q: f64;
-        let mut j: usize = 0;
-        while j < p {
-            q = 0.0;
-            for i in 0..n {
-                q += match allele_frequencies.matrix[(i, j)].is_nan() {
-                    true => 0.0,
-                    false => {
-                        allele_frequencies.matrix[(i, j)]
-                            * (filter_stats.pool_sizes[i]
-                                / filter_stats.pool_sizes.iter().sum::<f64>())
-                    }
-                };
-            }
-            if (q < filter_stats.min_allele_frequency)
-                || (q > (1.00 - filter_stats.min_allele_frequency))
-            {
-                allele_frequencies.matrix.remove_index(Axis(1), j);
-                matrix.remove_index(Axis(1), j);
-                self.alleles_vector.remove(j);
-                p -= 1;
-            } else {
-                j += 1;
-            }
-        }
-        // Check if all alleles have failed the minimum allele frequency, i.e. the locus has been filtered out
-        if p < 2 {
-            return Err(Error::new(ErrorKind::Other, "Filtered out."));
-        }
-        // Filter out if the locus is missing across all pools using the first allele where if the locus is missing then all
-        let (n, _p) = allele_frequencies.matrix.dim();
-        let n_missing_across_pools = allele_frequencies
-            .matrix
-            .slice(s![.., 0])
-            .fold(0, |sum, &x| if x.is_nan() { sum + 1 } else { sum });
-        if n_missing_across_pools == n {
-            return Err(Error::new(ErrorKind::Other, "Filtered out."));
-        }
-        // Filter-out the locus if the rate of missingness, i.e. the fraction of the pools missing coverage of the current locus is below the minimum threshold
-        if (n_missing_across_pools as f64 / n as f64) > filter_stats.max_missingness_rate {
-            return Err(Error::new(ErrorKind::Other, "Filtered out."));
-        }
-        // Return the locus if it passed all the filtering steps
-        self.matrix = matrix;
-        Ok(self)
-    }
-}
-
-impl Filter for LocusFrequencies {
-    // PileupLine to AlleleCounts
-    fn to_counts(&self) -> io::Result<Box<LocusCounts>> {
-        let n = self.matrix.nrows();
-        let p = self.matrix.ncols();
-        let mut matrix: Array2<u64> = Array2::from_elem((n, p), 0);
-        let mut max_n: f64;
-        for i in 0..n {
-            let row = self.matrix.row(i);
-            let min = row
-                .iter()
-                .filter(|&&x| x != 0.0)
-                .fold(1.0, |min, &x| if x < min { x } else { min });
-            if min == 0.0 {
-                return Err(Error::new(
-                    ErrorKind::Other,
-                    "At least one of the pools have no coverage.",
-                ));
-            }
-            max_n = 1.00 / min;
-            for j in 0..p {
-                matrix[(i, j)] = (max_n * self.matrix[(i, j)]).round() as u64;
-            }
-        }
-        Ok(Box::new(LocusCounts {
-            chromosome: self.chromosome.clone(),
-            position: self.position,
-            alleles_vector: self.alleles_vector.clone(),
-            matrix,
-        }))
-    }
-
-    // PileupLine to AlleleFrequencies
-    fn to_frequencies(&self) -> io::Result<Box<LocusFrequencies>> {
-        // Recompute the frequencies using frequencies when the number of colulmns or one or more alleles have been filtered out/removed
-        let n = self.matrix.nrows();
-        let p = self.matrix.ncols();
-        // let row_sums = self.matrix.sum_axis(Axis(1)); // summation across the columns which means sum of all elements per row
-        let row_sums = self.matrix.map_axis(Axis(1), |r| {
-            r.iter()
-                .filter(|&&x| !x.is_nan())
-                .fold(0.0, |sum, &x| sum + x)
-        }); // summation across the columns which means sum of all elements per row while ignoring NANs!
-            // // Make sure all pools have been convered
-            // if row_sums
-            //     .iter()
-            //     .fold(row_sums[0], |min, &x| if x < min { x } else { min })
-            //     == 0.0
-            // {
-            //     return Err(Error::new(
-            //         ErrorKind::Other,
-            //         "At least one pool did not have coverage.",
-            //     ));
-            // }
-        let mut matrix: Array2<f64> = Array2::from_elem((n, p), 0.0_f64);
-        for i in 0..n {
-            for j in 0..p {
-                matrix[(i, j)] = if row_sums[i] == 0.0 {
-                    f64::NAN
-                } else {
-                    self.matrix[(i, j)] / row_sums[i]
-                };
-            }
-        }
-        Ok(Box::new(LocusFrequencies {
-            chromosome: self.chromosome.clone(),
-            position: self.position,
-            alleles_vector: self.alleles_vector.clone(),
-            matrix,
-        }))
-    }
-
-    // Filter PileupLine by minimum coverage, minimum quality
-    fn filter(&mut self, filter_stats: &FilterStats) -> io::Result<&mut Self> {
-        // Cannot filter by base qualities as this information is lost and we are assuming this has been performed during pileup to sync conversion
-        // Also, cannot filter by minimum coverage as that data is lost from counts to frequencies conversion
-        // Preliminary check of the structure format
-        self.check()
-            .expect("Error calling check() within filter() method for LocusFrequencies struct.");
-        // Remove Ns
-        if filter_stats.remove_ns {
-            let i = match self
-                .alleles_vector
-                .iter()
-                .position(|x| (x == &"N".to_owned()) || (x == &"n".to_owned()))
-            {
-                Some(x) => x as i32,
-                None => -1,
-            };
-            if i != -1 {
-                self.alleles_vector.remove(i as usize);
-                self.matrix.remove_index(Axis(1), i as usize);
-            }
-        }
-        // println!("self={:?}", self);
-        // Recompute frequencies after removing Ns
-        let recomputed_self = match self.to_frequencies() {
-            Ok(x) => x,
-            Err(_) => {
-                return Err(Error::new(
-                    ErrorKind::Other,
-                    "T_T Cannot convert locus counts to locus frequencies.",
-                ))
-            }
-        };
-        self.alleles_vector = recomputed_self.alleles_vector;
-        self.matrix = recomputed_self.matrix;
-        // Filter by minimum allele frequency
-        // Before anything else, we clone matrix of allele frequencies
-        let mut matrix = self.matrix.clone();
-        //// First convert allele counts into frequencies
-        let mut allele_frequencies = match self.to_frequencies() {
-            Ok(x) => x,
-            Err(_) => {
-                return Err(Error::new(
-                    ErrorKind::Other,
-                    "Cannot convert locus counts to locus frequencies.",
-                ))
-            }
-        };
-        //// Next account for pool sizes to get the proper minmum allele frequency across all pools
-        let n = allele_frequencies.matrix.nrows();
-        let p_ = allele_frequencies.matrix.ncols();
-        let mut p = p_;
-        let mut q: f64;
-        let mut j: usize = 0;
-        while j < p {
-            q = 0.0;
-            for i in 0..n {
-                q += match allele_frequencies.matrix[(i, j)].is_nan() {
-                    true => 0.0,
-                    false => {
-                        allele_frequencies.matrix[(i, j)]
-                            * (filter_stats.pool_sizes[i]
-                                / filter_stats.pool_sizes.iter().sum::<f64>())
-                    }
-                };
-            }
-            if (q < filter_stats.min_allele_frequency)
-                || (q > (1.00 - filter_stats.min_allele_frequency))
-            {
-                allele_frequencies.matrix.remove_index(Axis(1), j);
-                matrix.remove_index(Axis(1), j);
-                self.alleles_vector.remove(j);
-                p -= 1;
-            } else {
-                j += 1;
-            }
-        }
-        // Check if all alleles have failed the minimum allele frequency, i.e. the locus has been filtered out
-        if p < 2 {
-            return Err(Error::new(ErrorKind::Other, "Filtered out."));
-        }
-        // Filter out if the locus is missing across all pools using the first allele where if the locus is missing then all
-        let (n, _p) = allele_frequencies.matrix.dim();
-        let n_missing_across_pools = allele_frequencies
-            .matrix
-            .slice(s![.., 0])
-            .fold(0, |sum, &x| if x.is_nan() { sum + 1 } else { sum });
-        if n_missing_across_pools == n {
-            return Err(Error::new(ErrorKind::Other, "Filtered out."));
-        }
-        // Filter-out the locus if the rate of missingness, i.e. the fraction of the pools missing coverage of the current locus is below the minimum threshold
-        if (n_missing_across_pools as f64 / n as f64) > filter_stats.max_missingness_rate {
-            return Err(Error::new(ErrorKind::Other, "Filtered out."));
-        }
-        // Correct allele frequencies if one or more alleles were filtered out
-        for i in 0..matrix.nrows() {
-            let row_sum = matrix.row(i).sum();
-            for j in 0..matrix.ncols() {
-                matrix[(i, j)] /= row_sum;
-            }
-        }
-        // Return the locus if it passed all the filtering steps
-        self.matrix = matrix;
-        Ok(self)
-    }
-}
-
-impl Sort for LocusFrequencies {
-    fn sort_by_allele_freq(&mut self, decreasing: bool) -> io::Result<&mut Self> {
-        let n = self.matrix.nrows();
-        let p = self.matrix.ncols();
-        let mut sorted_matrix: Array2<f64> = Array2::from_elem((n, p), f64::NAN);
-        let mut sorted_alleles_vector: Vec<String> = vec![];
-        let mut idx = (0..self.matrix.ncols()).collect::<Vec<usize>>();
-        // let column_sums = self.matrix.sum_axis(Axis(0));
-        let column_sums = self.matrix.map_axis(Axis(0), |r| {
-            r.iter()
-                .filter(|&&x| !x.is_nan())
-                .fold(0.0, |sum, &x| sum + x)
-        }); // ignoring NANs!
-            // println!("self={:?}", self);
-        if decreasing {
-            idx.sort_by(|&a, &b| column_sums[b].partial_cmp(&column_sums[a]).expect("Error sorting (decreasing) mean allele frequencies across pools within the sort_by_allele_freq() method for LocusFrequencies struct."));
-        } else {
-            idx.sort_by(|&a, &b| column_sums[a].partial_cmp(&column_sums[b]).expect("Error sorting (increasing) mean allele frequencies across pools within the sort_by_allele_freq() method for LocusFrequencies struct."));
-        }
-        for (i, j) in idx.into_iter().enumerate() {
-            sorted_matrix.column_mut(i).assign(&self.matrix.column(j));
-            sorted_alleles_vector.push(self.alleles_vector[j].clone());
-        }
-        self.matrix = sorted_matrix;
-        self.alleles_vector = sorted_alleles_vector;
-        Ok(self)
-    }
-}
-
-impl RemoveMissing for LocusCountsAndPhenotypes {
-    // Remove pools with missing data in the phenotype file
-    fn remove_missing(&mut self) -> io::Result<&mut Self> {
-        let (n, k) = self.phenotypes.dim();
-        let n_ = self.pool_names.len();
-        let (n__, p) = self.locus_counts.matrix.dim();
-        assert_eq!(n, n_);
-        assert_eq!(n, n__);
-        let pool_means: Array1<f64> = self.phenotypes.mean_axis(Axis(1)).expect("Error calculating phenotype means per pool within the remove_missing() method for LocusCountsAndPhenotypes struct.");
-        let mut idx: Vec<usize> = vec![];
-        for i in 0..n {
-            if !pool_means[i].is_nan() {
-                idx.push(i);
-            }
-        }
-        if !idx.is_empty() {
-            let mut new_phenotypes: Array2<f64> = Array2::from_elem((idx.len(), k), f64::NAN);
-            let mut new_pool_names: Vec<String> = vec![];
-            let mut new_locus_counts_matrix: Array2<u64> = Array2::from_elem((idx.len(), p), 0);
-            for (i_new, i) in idx.into_iter().enumerate() {
-                for j in 0..k {
-                    new_phenotypes[(i_new, j)] = self.phenotypes[(i, j)];
-                }
-                new_pool_names.push(self.pool_names[i].clone());
-                for j in 0..p {
-                    new_locus_counts_matrix[(i_new, j)] = self.locus_counts.matrix[(i, j)];
-                }
-            }
-            self.phenotypes = new_phenotypes;
-            self.pool_names = new_pool_names;
-            self.locus_counts.matrix = new_locus_counts_matrix;
-        } else {
-            return Err(Error::new(
-                ErrorKind::Other,
-                "All pools have missing data. Please check the phenotype file.",
-            ));
-        }
-        Ok(self)
-    }
-}
-
-impl RemoveMissing for GenotypesAndPhenotypes {
-    // Remove pools with missing data in the phenotype file
-    fn remove_missing(&mut self) -> io::Result<&mut Self> {
-        let (n, k) = self.phenotypes.dim();
-        let n_ = self.pool_names.len();
-        let (n__, p) = self.intercept_and_allele_frequencies.dim();
-        let (n___, l) = self.coverages.dim();
-        assert_eq!(n, n_);
-        assert_eq!(n, n__);
-        assert_eq!(n, n___);
-        let pool_means: Array1<f64> = self.phenotypes.mean_axis(Axis(1)).expect("Error calculating phenotype means per pool within the remove_missing() method for GenotypesAndPhenotypes struct.");
-        let mut idx: Vec<usize> = vec![];
-        for i in 0..n {
-            if !pool_means[i].is_nan() {
-                idx.push(i);
-            }
-        }
-        if !idx.is_empty() {
-            let mut new_phenotypes: Array2<f64> = Array2::from_elem((idx.len(), k), f64::NAN);
-            let mut new_pool_names: Vec<String> = vec![];
-            let mut new_intercept_and_allele_frequencies: Array2<f64> =
-                Array2::from_elem((idx.len(), p), f64::NAN);
-            let mut new_coverages: Array2<f64> = Array2::from_elem((idx.len(), l), f64::NAN);
-            for (i_new, i) in idx.into_iter().enumerate() {
-                for j in 0..k {
-                    new_phenotypes[(i_new, j)] = self.phenotypes[(i, j)];
-                }
-                new_pool_names.push(self.pool_names[i].clone());
-                for j in 0..p {
-                    new_intercept_and_allele_frequencies[(i_new, j)] =
-                        self.intercept_and_allele_frequencies[(i, j)];
-                }
-                for j in 0..l {
-                    new_coverages[(i_new, j)] = self.coverages[(i, j)];
-                }
-            }
-            self.phenotypes = new_phenotypes;
-            self.pool_names = new_pool_names;
-            self.intercept_and_allele_frequencies = new_intercept_and_allele_frequencies;
-            self.coverages = new_coverages;
-        } else {
-            return Err(Error::new(
-                ErrorKind::Other,
-                "All pools have missing data. Please check the phenotype file.",
-            ));
-        }
-        // println!("self={:?}", self);
-        // println!("self.phenotypes={:?}", self.phenotypes);
-        // println!("idx={:?}", idx);
-        Ok(self)
-    }
-}
-
-impl LoadAll for FileSyncPhen {
-    fn per_chunk_load(
-        &self,
-        start: &u64,
-        end: &u64,
-        filter_stats: &FilterStats,
-        keep_p_minus_1: bool,
-    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)> {
-        // Input syn file
-        let fname = self.filename_sync.clone();
-
-        // Prepare output vectors
-        let mut freq: Vec<LocusFrequencies> = Vec::new();
-        let mut cnts: Vec<LocusCounts> = Vec::new();
-        // Input file chunk
-        let file = File::open(fname.clone()).expect(
-            "Error opening input sync file within per_chunk_load() method for FileSyncPhen struct.",
-        );
-        let mut reader = BufReader::new(file);
-        // Navigate to the start of the chunk
-        let mut i: u64 = *start;
-        reader.seek(SeekFrom::Start(*start)).expect("Error navigating input sync file within per_chunk_load() method for FileSyncPhen struct.");
-        // Read and parse until the end of the chunk
-        while i < *end {
-            // Instantiate the line
-            let mut line = String::new();
-            // Read the line which automatically movesthe cursor position to the next line
-            let _ = reader.read_line(&mut line).expect("Error reading input sync file within per_chunk_load() method for FileSyncPhen struct.");
-            // Find the new cursor position
-            i = reader.stream_position().expect("Error navigating input sync file within per_chunk_load() method for FileSyncPhen struct.");
-            // Remove trailing newline character in Unix-like (\n) and Windows (\r)
-            if line.ends_with('\n') {
-                line.pop();
-                if line.ends_with('\r') {
-                    line.pop();
-                }
-            }
-            // Parse the pileup line
-            let mut locus_counts: LocusCounts = match line.lparse() {
-                Ok(x) => *x,
-                Err(x) => match x.kind() {
-                    ErrorKind::Other => continue,
-                    _ => {
-                        return Err(Error::new(
-                            ErrorKind::Other,
-                            "T_T Input sync file error, i.e. '".to_owned()
-                                + &fname
-                                + "' at line with the first 20 characters as: "
-                                + &line[0..20]
-                                + ".",
-                        ))
-                    }
-                },
-            };
-            match locus_counts.filter(filter_stats) {
-                Ok(x) => x,
-                Err(_) => continue,
-            };
-            let mut locus_frequencies = match locus_counts.to_frequencies() {
-                Ok(x) => *x,
-                Err(_) => continue,
-            };
-            // Remove minor allele
-            if keep_p_minus_1 {
-                locus_frequencies.sort_by_allele_freq(true).expect("Error sorting alleles by decreasing mean frequencies within the per_chunk_load() method for FileSyncPhen struct.");
-                locus_frequencies.matrix.remove_index(Axis(1), 0);
-                locus_frequencies.alleles_vector.remove(0);
-            }
-            freq.push(locus_frequencies);
-            cnts.push(locus_counts);
-        }
-        Ok((freq, cnts))
-    }
-
-    fn load(
-        &self,
-        filter_stats: &FilterStats,
-        keep_p_minus_1: bool,
-        n_threads: &usize,
-    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)> {
-        let fname = self.filename_sync.clone();
-        // Find the positions whereto split the file into n_threads pieces
-        let chunks = find_file_splits(&fname, n_threads).expect(
-            "Error splitting the input sync file within the load() method for FileSyncPhen struct.",
-        );
-        let n_threads = chunks.len() - 1;
-        println!("Chunks: {:?}", chunks);
-        // Tuple arguments of pileup2sync_chunks
-        // Instantiate thread object for parallel execution
-        let mut thread_objects = Vec::new();
-        // Vector holding all returns from pileup2sync_chunk()
-        let thread_ouputs_freq: Arc<Mutex<Vec<LocusFrequencies>>> =
-            Arc::new(Mutex::new(Vec::new())); // Mutated within each thread worker
-                                              // Mutated within each thread worker
-        let thread_ouputs_cnts: Arc<Mutex<Vec<LocusCounts>>> = Arc::new(Mutex::new(Vec::new()));
-        for i in 0..n_threads {
-            // Clone pileup2sync_chunk parameters
-            let self_clone = self.clone();
-            let start = chunks[i];
-            let end = chunks[i + 1];
-            let filter_stats = filter_stats.clone();
-            let thread_ouputs_freq_clone = thread_ouputs_freq.clone(); // Mutated within the current thread worker
-            let thread_ouputs_cnts_clone = thread_ouputs_cnts.clone(); // Mutated within the current thread worker
-            let thread = std::thread::spawn(move || {
-                let (mut freq, mut cnts) = self_clone
-                    .per_chunk_load(&start, &end, &filter_stats, keep_p_minus_1)
-                    .expect("Error calling per_chunk_load() within the load() method for FileSyncPhen struct.");
-                thread_ouputs_freq_clone.lock().expect("Error locking thread_ouputs_freq_clone during multi-threaded execution of per_chunk_load() within the load() method for FileSyncPhen struct.").append(&mut freq);
-                thread_ouputs_cnts_clone.lock().expect("Error locking thread_ouputs_cnts_clone during multi-threaded execution of per_chunk_load() within the load() method for FileSyncPhen struct.").append(&mut cnts);
-            });
-            thread_objects.push(thread);
-        }
-        // Waiting for all threads to finish
-        for thread in thread_objects {
-            thread.join().expect("Unknown thread error occured.");
-        }
-        // Extract output filenames from each thread into a vector and sort them
-        let mut freq: Vec<LocusFrequencies> = Vec::new();
-        let mut cnts: Vec<LocusCounts> = Vec::new();
-        for x in thread_ouputs_freq.lock().expect("Error unlocking the threads after multi-threaded execution to extract allele frequencies within the load() method for FileSyncPhen struct.").iter() {
-            freq.push(x.clone());
-        }
-        for x in thread_ouputs_cnts.lock().expect("Error unlocking the threads after multi-threaded execution to extract allele counts within the load() method for FileSyncPhen struct.").iter() {
-            cnts.push(x.clone());
-        }
-        freq.sort_by(|a, b| {
-            a.chromosome
-                .cmp(&b.chromosome)
-                .then(a.position.cmp(&b.position))
-        });
-        cnts.sort_by(|a, b| {
-            a.chromosome
-                .cmp(&b.chromosome)
-                .then(a.position.cmp(&b.position))
-        });
-
-        Ok((freq, cnts))
-    }
-
-    fn convert_into_genotypes_and_phenotypes(
-        &self,
-        filter_stats: &FilterStats,
-        keep_p_minus_1: bool,
-        n_threads: &usize,
-    ) -> io::Result<GenotypesAndPhenotypes> {
-        let (freqs, cnts) = self.load(filter_stats, keep_p_minus_1, n_threads).expect("Error calling load() within the convert_into_genotypes_and_phenotypes() method for FileSyncPhen struct.");
-        let n = self.pool_names.len();
-        let m = freqs.len(); // total number of loci
-                             // Find the total number of alleles across all loci
-        let mut p = 1; // start with the intercept
-        for f in freqs.iter() {
-            p += f.matrix.ncols();
-        }
-        // println!("p={}", p);
-        let mut chromosome: Vec<String> = Vec::with_capacity(p);
-        chromosome.push("intercept".to_owned());
-        let mut position: Vec<u64> = Vec::with_capacity(p);
-        position.push(0);
-        let mut allele: Vec<String> = Vec::with_capacity(p);
-        allele.push("intercept".to_owned());
-        let mut coverages: Array2<f64> = Array2::from_elem((n, m), f64::NAN);
-        let mut mat: Array2<f64> = Array2::from_elem((n, p), 1.0);
-        let mut j: usize = 1; // SNP index across loci, start after the intercept
-        assert_eq!(
-            freqs.len(),
-            cnts.len(),
-            "Frequencies and counts not the same length."
-        );
-        for (l, idx) in (0..freqs.len()).enumerate() {
-            // Allele frequencies
-            let f = &freqs[idx];
-            for j_ in 0..f.matrix.ncols() {
-                chromosome.push(f.chromosome.clone());
-                position.push(f.position);
-                allele.push(f.alleles_vector[j_].clone());
-                for i in 0..f.matrix.nrows() {
-                    mat[(i, j)] = f.matrix[(i, j_)];
-                }
-                j += 1; // next allele
-            }
-            // Coverages
-            let c = &cnts[idx];
-            let cov: Array1<f64> = c.matrix.map_axis(Axis(1), |r| {
-                r.map(|&x| x as f64)
-                    .iter()
-                    .filter(|&&x| !x.is_nan())
-                    .fold(0.0, |sum, &x| sum + x)
-            }); // summation across the columns which means sum of all elements per row while ignoring NANs!
-            for i in 0..cov.len() {
-                coverages[(i, l)] = cov[i];
-            }
-        }
-        // println!("coverages={:?}", coverages);
-        // println!("mat={:?}", mat);
-        // println!("mat={:?}", mat.slice(s![0..5, 0..4]));
-        // println!("chromosome[0]={:?}", chromosome[0]);
-        // println!("chromosome[1]={:?}", chromosome[1]);
-        // println!("chromosome[2]={:?}", chromosome[2]);
-        // println!("chromosome[3]={:?}", chromosome[3]);
-        // println!("position[0]={:?}", position[0]);
-        // println!("position[1]={:?}", position[1]);
-        // println!("position[2]={:?}", position[2]);
-        // println!("position[3]={:?}", position[3]);
-        Ok(GenotypesAndPhenotypes {
-            chromosome,
-            position,
-            allele,
-            intercept_and_allele_frequencies: mat,
-            phenotypes: self.phen_matrix.clone(),
-            pool_names: self.pool_names.clone(),
-            coverages,
-        })
-    }
-}
-
-impl SaveCsv for FileSyncPhen {
-    fn write_csv(
-        &self,
-        filter_stats: &FilterStats,
-        keep_p_minus_1: bool,
-        out: &str,
-        n_threads: &usize,
-    ) -> io::Result<String> {
-        // Output filename
-        let out = if out.is_empty() {
-            let time = SystemTime::now()
-                .duration_since(UNIX_EPOCH)
-                .expect("Error extracting time in UNIX_EPOCH within write_csv() method for FileSyncPhen struct.")
-                .as_secs_f64();
-            let bname = self.filename_sync.split('.').rev().collect::<Vec<&str>>()[1..]
-                .iter()
-                .copied()
-                .rev()
-                .collect::<Vec<&str>>()
-                .join(".");
-            bname.to_owned() + "-" + &time.to_string() + "-allele_frequencies.csv"
-        } else {
-            out.to_owned()
-        };
-        // Instantiate output file
-        let error_writing_file = "Unable to create file: ".to_owned() + &out;
-        let mut file_out = OpenOptions::new()
-            .create_new(true)
-            .write(true)
-            .append(false)
-            .open(&out)
-            .expect(&error_writing_file);
-        // Load the full sync file in parallel and sort
-        let (freqs, _cnts) = self
-            .load(filter_stats, keep_p_minus_1, n_threads)
-            .expect("Error calling load() within the write_csv() method for FileSyncPhen struct.");
-        // Make sure that we have the same number of pools in the genotype and phenotype files
-        assert!(!freqs.is_empty(), "No data passed the filtering variables. Please decrease minimum depth, and/or minimum allele frequency.");
-        assert!(
-            freqs[0].matrix.nrows() == self.pool_names.len(),
-            "Please check that the pools are consistent across the genotype and phenotype files."
-        );
-        // Write the header
-        file_out
-            .write_all(
-                ("#chr,pos,allele,".to_owned() + &self.pool_names.join(",") + "\n").as_bytes(),
-            )
-            .expect(
-                "Error calling write_all() within the write_csv() method for FileSyncPhen struct.",
-            );
-        // Write allele frequencies line by line
-        for f in freqs.iter() {
-            for i in 0..f.alleles_vector.len() {
-                let freqs_per_pool = f
-                    .matrix
-                    .column(i)
-                    .iter()
-                    .map(|x| parse_f64_roundup_and_own(*x, 6))
-                    .collect::<Vec<String>>()
-                    .join(",");
-                let line = [
-                    f.chromosome.to_owned(),
-                    f.position.to_string(),
-                    f.alleles_vector[i].to_owned(),
-                    freqs_per_pool,
-                ]
-                .join(",")
-                    + "\n";
-                file_out.write_all(line.as_bytes()).expect("Error calling write_all() per line of the output file within the write_csv() method for FileSyncPhen struct.");
-            }
-        }
-        Ok(out)
-    }
-}
-
-impl SaveCsv for GenotypesAndPhenotypes {
-    fn write_csv(
-        &self,
-        _filter_stats: &FilterStats,
-        _keep_p_minus_1: bool,
-        out: &str,
-        _n_threads: &usize,
-    ) -> io::Result<String> {
-        // Note: All input parameters are not used except for one - out, the rest are for other implementations of this trait i.e. filter_stats, keep_p_minus_1, and n_threads
-        // Sanity checks
-        let (n, p) = self.intercept_and_allele_frequencies.dim();
-        let (n_, _l) = self.coverages.dim();
-        let (n__, _k) = self.phenotypes.dim();
-        let n___ = self.pool_names.len();
-        let p_ = self.chromosome.len();
-        let p__ = self.position.len();
-        let p___ = self.allele.len();
-        assert_eq!(p_, p__, "Please check the genotypes and phenotypes data: the number of elements in the chromosome names vector is not equal to the number of elements in the positions vector.");
-        assert_eq!(p_, p___, "Please check the genotypes and phenotypes data: the number of elements in the chromosome names vector is not equal to the number of elements in the alleles vector.");
-        assert_eq!(p_, p, "Please check the genotypes and phenotypes data: the number of elements in the chromosome names vector is not equal to the number of columns in the allele frequencies matrix.");
-        assert_eq!(n___, n__, "Please check the genotypes and phenotypes data: the number of elements in the pool names vector is not equal to the number of rows in the phenotypes matrix.");
-        assert_eq!(n___, n_, "Please check the genotypes and phenotypes data: the number of elements in the pool names vector is not equal to the number of rows in the coverages matrix.");
-        assert_eq!(n___, n, "Please check the genotypes and phenotypes data: the number of elements in the pool names vector is not equal to the number of rows in the allele frequencies matrix.");
-        // Output filename
-        let out = if out.is_empty() {
-            let time = SystemTime::now()
-                .duration_since(UNIX_EPOCH)
-                .expect("Error extracting time in UNIX_EPOCH within write_csv() method for GenotypesAndPhenotypes struct.")
-                .as_secs_f64();
-            "genotypes_and_phenotypes".to_owned()
-                + "-"
-                + &time.to_string()
-                + "-allele_frequencies.csv"
-        } else {
-            out.to_owned()
-        };
-        // Instantiate output file
-        let error_writing_file = "Unable to create file: ".to_owned() + &out;
-        let mut file_out = OpenOptions::new()
-            .create_new(true)
-            .write(true)
-            .append(false)
-            .open(&out)
-            .expect(&error_writing_file);
-        // Write the header
-        file_out
-            .write_all(
-                ("#chr,pos,allele,".to_owned() + &self.pool_names.join(",") + "\n").as_bytes(),
-            )
-            .expect("Error calling write_all() within the write_csv() method for GenotypesAndPhenotypes struct.");
-        // Write allele frequencies line by line (skip the intercept)
-        for i in 1..p {
-            let freqs_per_pool = self
-                .intercept_and_allele_frequencies
-                .column(i)
-                .iter()
-                .map(|&x| parse_f64_roundup_and_own(x, 6))
-                .collect::<Vec<String>>()
-                .join(",");
-            let line = [
-                self.chromosome[i].to_owned(),
-                self.position[i].to_string(),
-                self.allele[i].to_owned(),
-                freqs_per_pool,
-            ]
-            .join(",")
-                + "\n";
-            file_out.write_all(line.as_bytes()).expect("Error calling write_all() per line of the output file within the write_csv() method for GenotypesAndPhenotypes struct.");
-        }
-        Ok(out)
-    }
-}
-
-////////////////////////////////////////////////////////////////////////////////////////////////////////////
-#[cfg(test)]
-mod tests {
-    use rand::prelude::Distribution;
-
-    // Note this useful idiom: importing names from outer (for mod tests) scope.
-    use super::*;
-    #[test]
-    fn test_sync_check() {
-        // (01) CheckStruct: LocusCounts
-        let mut locus_counts = LocusCounts {
-            chromosome: "chr1".to_owned(),
-            position: 12345,
-            alleles_vector: vec!["A".to_owned()], // Missing an allele in alleles_vector
-            matrix: Array2::from_shape_vec((5, 2), vec![10, 90, 20, 80, 50, 50, 80, 20, 90, 10])
-                .unwrap(),
-        };
-        // Missing an allele in alleles_vector
-        assert!(locus_counts.check().is_err());
-        // Append the missing allele
-        locus_counts.alleles_vector.push("D".to_owned());
-        // No error
-        assert_eq!((), locus_counts.check().unwrap());
-        // (02) CheckStruct: LocusFrequencies
-        let mut locus_frequncies = LocusFrequencies {
-            chromosome: "chr1".to_owned(),
-            position: 12345,
-            alleles_vector: vec!["A".to_owned()], // Missing an allele in alleles_vector
-            matrix: Array2::from_shape_vec(
-                (5, 2),
-                vec![0.1, 0.9, 0.2, 0.8, 0.5, 0.5, 0.8, 0.2, 0.9, 0.1],
-            )
-            .unwrap(),
-        };
-        // Missing an allele in alleles_vector
-        assert!(locus_frequncies.check().is_err());
-        // Append the missing allele
-        locus_frequncies.alleles_vector.push("D".to_owned());
-        // No error
-        assert_eq!((), locus_frequncies.check().unwrap());
-        // (03) CheckStruct: LocusCountsAndPhenotypes
-        let mut locus_counts_and_phenotypes = LocusCountsAndPhenotypes {
-            locus_counts,
-            phenotypes: Array2::from_shape_vec((4, 1), vec![0.1, 0.2, 0.3, 0.4]).unwrap(),
-            pool_names: (1..5)
-                .map(|x| "Pop".to_owned() + &x.to_string()[..])
-                .collect(),
-        };
-        // Missing phenotype, and pool name
-        assert!(locus_counts_and_phenotypes.check().is_err());
-        // Replace phenotype array with the complete data
-        locus_counts_and_phenotypes.phenotypes =
-            Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap();
-        // Missing pool name
-        assert!(locus_counts_and_phenotypes.check().is_err());
-        // Append missing pool name
-        locus_counts_and_phenotypes
-            .pool_names
-            .push("Pop5".to_owned());
-        // No error
-        assert_eq!((), locus_counts_and_phenotypes.check().unwrap());
-        // (04) CheckStruct: GenotypesAndPhenotypes
-        let rng = rand::thread_rng();
-        let dist_gaus = statrs::distribution::Normal::new(0.0, 1.0).unwrap();
-        let mut genotypes_and_phenotypes = GenotypesAndPhenotypes {
-            chromosome: [
-                "intercept",
-                "chr1",
-                "chr1",
-                "chr1",
-                "chr2",
-                "chr2",
-                "chr2",
-                "chrX",
-                "chrX",
-            ]
-            .iter()
-            .map(|&x| x.to_owned())
-            .collect(),
-            position: vec![0, 123, 123, 123, 50005, 50005, 50005, 701, 701],
-            allele: ["intercept", "A", "T", "C", "A", "T", "C", "A", "T"]
-                .iter()
-                .map(|&x| x.to_owned())
-                .collect(),
-            intercept_and_allele_frequencies: Array2::from_shape_vec(
-                (5, 9),
-                vec![
-                    1.0, 0.1, 0.0, 0.9, 0.1, 0.1, 0.8, 0.6, 0.4, 1.0, 0.0, 0.1, 0.9, 0.2, 0.0, 0.8,
-                    0.5, 0.5, 1.0, 0.0, 0.0, 1.0, 0.1, 0.9, 0.0, 0.1, 0.9, 1.0, 0.0, 0.0, 1.0, 0.0,
-                    0.0, 1.0, 0.3, 0.7, 1.0, 0.3, 0.5, 0.2, 0.0, 0.5, 0.5, 0.5, 0.5,
-                ],
-            )
-            .unwrap(),
-            phenotypes: Array2::from_shape_vec(
-                (5, 2),
-                dist_gaus.sample_iter(rng.clone()).take(5 * 2).collect(),
-            )
-            .unwrap(),
-            pool_names: (0..4)
-                .map(|x| "Pop".to_owned() + &x.to_string()[..])
-                .collect(), // missing the 5th pool
-            coverages: Array2::from_shape_vec(
-                (5, 3),
-                std::iter::repeat(100.0).take(5 * 3).collect(),
-            )
-            .unwrap(),
-        };
-        println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
-        assert!(genotypes_and_phenotypes.check().is_err());
-        // Add missing poool
-        genotypes_and_phenotypes.pool_names.push("Pop5".to_owned());
-        // No error
-        assert_eq!((), genotypes_and_phenotypes.check().unwrap());
-    }
-
-    #[test]
-    fn test_sync_count() {
-        let rng = rand::thread_rng();
-        let dist_gaus = statrs::distribution::Normal::new(0.0, 1.0).unwrap();
-        let genotypes_and_phenotypes = GenotypesAndPhenotypes {
-            chromosome: [
-                "intercept",
-                "chr1",
-                "chr1",
-                "chr1",
-                "chr2",
-                "chr2",
-                "chr2",
-                "chrX",
-                "chrX",
-            ]
-            .iter()
-            .map(|&x| x.to_owned())
-            .collect(),
-            position: vec![0, 123, 123, 123, 50005, 50005, 50005, 701, 701],
-            allele: ["intercept", "A", "T", "C", "A", "T", "C", "A", "T"]
-                .iter()
-                .map(|&x| x.to_owned())
-                .collect(),
-            intercept_and_allele_frequencies: Array2::from_shape_vec(
-                (5, 9),
-                vec![
-                    1.0, 0.1, 0.0, 0.9, 0.1, 0.1, 0.8, 0.6, 0.4, 1.0, 0.0, 0.1, 0.9, 0.2, 0.0, 0.8,
-                    0.5, 0.5, 1.0, 0.0, 0.0, 1.0, 0.1, 0.9, 0.0, 0.1, 0.9, 1.0, 0.0, 0.0, 1.0, 0.0,
-                    0.0, 1.0, 0.3, 0.7, 1.0, 0.3, 0.5, 0.2, 0.0, 0.5, 0.5, 0.5, 0.5,
-                ],
-            )
-            .unwrap(),
-            phenotypes: Array2::from_shape_vec(
-                (5, 2),
-                dist_gaus.sample_iter(rng.clone()).take(5 * 2).collect(),
-            )
-            .unwrap(),
-            pool_names: (0..4)
-                .map(|x| "Pop".to_owned() + &x.to_string()[..])
-                .collect(), // missing the 5th pool
-            coverages: Array2::from_shape_vec(
-                (5, 3),
-                std::iter::repeat(100.0).take(5 * 3).collect(),
-            )
-            .unwrap(),
-        };
-        println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
-        println!(
-            "genotypes_and_phenotypes.count_loci().unwrap()={:?}",
-            genotypes_and_phenotypes.count_loci().unwrap()
-        );
-        let loci = genotypes_and_phenotypes.count_loci().unwrap();
-        assert_eq!(vec![1, 4, 7, 9], loci.0); // includes the trailing locus position + 1 for index slicing since the end position is exclusive
-        assert_eq!(
-            vec![
-                "chr1".to_owned(),
-                "chr2".to_owned(),
-                "chrX".to_owned(),
-                "chrX".to_owned()
-            ],
-            loci.1
-        ); // includes the trailing locus
-        assert_eq!(vec![123, 50005, 701, 701], loci.2); // includes the trailing locus
-                                                        // assert_eq!((), genotypes_and_phenotypes.count_loci().unwrap());
-    }
-
-    #[test]
-    fn test_sync_parse() {
-        let line = "Chromosome1\t456527\tC\t1:0:999:0:4:0\t0:1:2:0:0:0\t0:2:4:0:0:0\t0:1:4:0:0:0\t0:1:6:0:0:0".to_owned();
-        let counts: Box<LocusCounts> = line.lparse().unwrap();
-        println!("counts={:?}", counts);
-        assert!(
-            Array2::from_shape_vec(
-                (5, 6),
-                vec![
-                    1, 0, 999, 0, 4, 0, 0, 1, 2, 0, 0, 0, 0, 2, 4, 0, 0, 0, 0, 1, 4, 0, 0, 0, 0, 1,
-                    6, 0, 0, 0,
-                ]
-            )
-            .unwrap()
-                == (*counts).matrix
-        );
-    }
-
-    #[test]
-    fn test_sync_filter() {
-        let line = "Chromosome1\t456527\tC\t1:0:999:0:4:0\t0:1:2:0:0:0\t0:2:4:0:0:0\t0:1:4:0:0:0\t0:1:6:0:0:0".to_owned();
-        let mut counts: Box<LocusCounts> = line.lparse().unwrap();
-        let mut frequencies: Box<LocusFrequencies> = counts.to_frequencies().unwrap();
-        let filter_stats = FilterStats {
-            remove_ns: true,
-            min_quality: 0.005,
-            min_coverage: 1,
-            min_allele_frequency: 0.005,
-            max_missingness_rate: 0.0,
-            pool_sizes: vec![20., 20., 20., 20., 20.],
-        };
-        assert!(counts == counts.to_counts().unwrap());
-        assert!(
-            Array2::from_shape_vec(
-                (5, 6),
-                vec![
-                    1. / 1004.,
-                    0.,
-                    999. / 1004.,
-                    0.,
-                    4. / 1004.,
-                    0.,
-                    0.,
-                    1. / 3.,
-                    2. / 3.,
-                    0.,
-                    0.,
-                    0.,
-                    0.,
-                    2. / 6.,
-                    4. / 6.,
-                    0.,
-                    0.,
-                    0.,
-                    0.,
-                    1. / 5.,
-                    4. / 5.,
-                    0.,
-                    0.,
-                    0.,
-                    0.,
-                    1. / 7.,
-                    6. / 7.,
-                    0.,
-                    0.,
-                    0.,
-                ]
-            )
-            .unwrap()
-                == frequencies.matrix
-        );
-        counts.filter(&filter_stats).unwrap();
-        assert!(
-            Array2::from_shape_vec((5, 2), vec![0, 999, 1, 2, 2, 4, 1, 4, 1, 6]).unwrap()
-                == counts.matrix
-        );
-        assert!(
-            Array2::from_shape_vec(
-                (5, 6),
-                vec![
-                    1, 0, 999, 0, 4, 0, 0, 1, 2, 0, 0, 0, 0, 1, 2, 0, 0, 0, 0, 1, 4, 0, 0, 0, 0, 1,
-                    6, 0, 0, 0,
-                ]
-            )
-            .unwrap()
-                == frequencies.to_counts().unwrap().matrix
-        );
-        assert!(frequencies == frequencies.to_frequencies().unwrap());
-        frequencies.filter(&filter_stats).unwrap();
-        assert!(
-            Array2::from_shape_vec(
-                (5, 2),
-                vec![
-                    0. / 999.,
-                    999. / 999.,
-                    1. / 3.,
-                    2. / 3.,
-                    2. / 6.,
-                    4. / 6.,
-                    1. / 5.,
-                    4. / 5.,
-                    1. / 7.,
-                    6. / 7.,
-                ]
-            )
-            .unwrap()
-                == frequencies.matrix
-        );
-    }
-
-    #[test]
-    fn test_sync_sort() {
-        let line = "Chromosome1\t456527\tC\t1:0:999:0:4:0\t0:1:2:0:0:0\t0:2:4:0:0:0\t0:1:4:0:0:0\t0:1:6:0:0:0".to_owned();
-        let counts: Box<LocusCounts> = line.lparse().unwrap();
-        let mut frequencies: Box<LocusFrequencies> = counts.to_frequencies().unwrap();
-        frequencies.sort_by_allele_freq(true).unwrap();
-        assert!(vec!["C".to_owned(), "T".to_owned()] == frequencies.alleles_vector[0..2]);
-        assert!(Array1::from_vec(vec![0.0; 5]).view() == frequencies.matrix.column(5));
-        frequencies.sort_by_allele_freq(false).unwrap();
-        assert!(vec!["T".to_owned(), "C".to_owned()] == frequencies.alleles_vector[4..6]);
-        assert!(Array1::from_vec(vec![0.0; 5]).view() == frequencies.matrix.column(0));
-    }
-
-    #[test]
-    fn test_sync_remove_missing() {
-        let lines = vec!["Chromosome1\t12345\tC\t1:0:999:0:4:0\t0:1:2:0:0:0\t0:2:4:0:0:0\t0:1:4:0:0:0\t0:1:6:0:0:0".to_owned(),
-        "Chromosome2\t6789\tA\t1:0:0:3:0:0\t1:0:0:5:0:0\t7:0:0:2:0:0\t2:0:0:10:0:0\t10:0:0:50:0:0".to_owned(),
-        "Chromosome3\t42069\tT\t10:10:0:0:0:0\t5:12:0:0:0:0\t5:24:0:0:0:0\t5:14:0:0:0:0\t3:16:0:0:0:0".to_owned(),
-        ];
-        let mut counts: LocusCounts = *(lines[0].lparse().unwrap());
-        let filter_stats = FilterStats {
-            remove_ns: true,
-            min_quality: 0.005,
-            min_coverage: 1,
-            min_allele_frequency: 0.005,
-            max_missingness_rate: 0.0,
-            pool_sizes: vec![20., 20., 20., 20., 20.],
-        };
-        counts.filter(&filter_stats).unwrap();
-        let mut locus_counts_and_phenotypes = LocusCountsAndPhenotypes {
-            locus_counts: counts,
-            phenotypes: Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap(), // n pools x k traits
-            pool_names: (0..5)
-                .map(|x| ("pool_".to_owned() + &x.to_string()).to_owned())
-                .collect::<Vec<String>>(),
-        };
-
-        // Extract loci counts and frequencies
-        let mut loci_counts: Vec<LocusCounts> = vec![];
-        let mut loci_frequencies: Vec<LocusFrequencies> = vec![];
-        for i in 0..lines.len() {
-            let mut counts: LocusCounts = *(lines[i].lparse().unwrap());
-            let mut frequencies = counts.to_frequencies().unwrap();
-            counts.filter(&filter_stats).unwrap();
-            frequencies.filter(&filter_stats).unwrap();
-            frequencies.filter(&filter_stats).unwrap();
-            loci_counts.push(counts.clone());
-            loci_frequencies.push(*frequencies);
-        }
-        // Extract coverages n x l loci
-        let n = loci_counts[0].matrix.nrows();
-        let p = loci_counts.len();
-        let mut coverages: Array2<f64> = Array2::from_elem((n, p), f64::NAN);
-        for j in 0..p {
-            for i in 0..n {
-                coverages[(i, j)] = loci_counts[j].matrix.row(i).sum() as f64;
-            }
-        }
-        // println!("coverages={:?}", coverages);
-        // Build the GenotypesAndPhenotypes struct
-        let mut chromosome: Vec<String> = vec![];
-        let mut position: Vec<u64> = vec![];
-        let mut allele: Vec<String> = vec![];
-        let mut vec_intercept_and_allele_frequencies: Vec<f64> = vec![];
-        let phenotypes: Array2<f64> =
-            Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap();
-        let pool_names: Vec<String> = (0..5)
-            .map(|x| ("pool_".to_owned() + &x.to_string()).to_owned())
-            .collect();
-        let coverages: Array2<f64> = coverages;
-        for j in 0..loci_frequencies.len() {
-            let l = loci_frequencies[j].matrix.ncols();
-            chromosome.append(&mut vec![loci_frequencies[j].chromosome.clone(); l]);
-            position.append(&mut vec![loci_frequencies[j].position; l]);
-            allele.append(&mut loci_frequencies[j].alleles_vector.clone());
-        }
-        for i in 0..n {
-            vec_intercept_and_allele_frequencies.push(1.0); // append the intercept
-            for j in 0..loci_frequencies.len() {
-                vec_intercept_and_allele_frequencies.append(
-                    &mut loci_frequencies[j]
-                        .matrix
-                        .row(i)
-                        .map(|&x| x.to_owned())
-                        .into_iter()
-                        .collect::<Vec<f64>>(),
-                );
-            }
-        }
-        // println!("vec_intercept_and_allele_frequencies={:?}", vec_intercept_and_allele_frequencies);
-        let p_plus_one = vec_intercept_and_allele_frequencies.len() / n;
-        let intercept_and_allele_frequencies: Array2<f64> =
-            Array2::from_shape_vec((n, p_plus_one), vec_intercept_and_allele_frequencies).unwrap();
-        let mut genotypes_and_phenotypes = GenotypesAndPhenotypes {
-            chromosome: chromosome,
-            position: position,
-            allele: allele,
-            intercept_and_allele_frequencies: intercept_and_allele_frequencies,
-            phenotypes: phenotypes,
-            pool_names: pool_names,
-            coverages: coverages,
-        };
-        // println!("loci_frequencies={:?}", loci_frequencies);
-        // println!("loci_counts={:?}", loci_counts);
-        // println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
-        assert_eq!(
-            vec![1, 1, 2, 2, 3, 3]
-                .iter()
-                .map(|&x| "Chromosome".to_owned() + &x.to_string())
-                .collect::<Vec<String>>(),
-            genotypes_and_phenotypes.chromosome
-        );
-        assert_eq!(
-            vec![12345, 12345, 6789, 6789, 42069, 42069],
-            genotypes_and_phenotypes.position
-        );
-        assert_eq!(
-            Array1::from_vec(vec![0.0, 1.0, 2.0, 1.0, 1.0]),
-            &genotypes_and_phenotypes
-                .intercept_and_allele_frequencies
-                .column(1)
-                * &genotypes_and_phenotypes.coverages.column(0)
-        );
-        assert_eq!(
-            Array1::from_vec(vec![1.0, 1.0, 7.0, 2.0, 10.]),
-            &genotypes_and_phenotypes
-                .intercept_and_allele_frequencies
-                .column(3)
-                * &genotypes_and_phenotypes.coverages.column(1)
-        );
-        assert_eq!(
-            Array1::from_vec(vec![10., 5.0, 5.0, 5.0, 3.0]),
-            &genotypes_and_phenotypes
-                .intercept_and_allele_frequencies
-                .column(5)
-                * &genotypes_and_phenotypes.coverages.column(2)
-        );
-
-        locus_counts_and_phenotypes.phenotypes[(0, 0)] = f64::NAN;
-        genotypes_and_phenotypes.phenotypes[(1, 0)] = f64::NAN;
-        locus_counts_and_phenotypes.remove_missing().unwrap();
-        genotypes_and_phenotypes.remove_missing().unwrap();
-        println!(
-            "locus_counts_and_phenotypes={:?}",
-            locus_counts_and_phenotypes
-        );
-        println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
-
-        assert_eq!(4, locus_counts_and_phenotypes.phenotypes.nrows());
-        assert_eq!(4, locus_counts_and_phenotypes.locus_counts.matrix.nrows());
-        assert_eq!(
-            4,
-            genotypes_and_phenotypes
-                .intercept_and_allele_frequencies
-                .nrows()
-        );
-        assert_eq!(4, genotypes_and_phenotypes.coverages.nrows());
-    }
-
-    #[test]
-    fn test_sync_load() {
-        let file_sync_phen = FileSyncPhen {
-            filename_sync: "tests/test.sync".to_owned(),
-            pool_names: (0..5)
-                .map(|x| "Pop".to_owned() + &x.to_string()[..])
-                .collect(),
-            pool_sizes: vec![100.0; 5],
-            phen_matrix: Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap(),
-            test: "test".to_owned(),
-        };
-        let filter_stats = FilterStats {
-            remove_ns: true,
-            min_quality: 1.00,
-            min_coverage: 0,
-            min_allele_frequency: 0.01,
-            max_missingness_rate: 1.0,
-            pool_sizes: vec![20., 20., 20., 20., 20.],
-        };
-        // Per chunk
-        let (locus_frequencies, locus_counts) = file_sync_phen
-            .per_chunk_load(&0, &300, &filter_stats, false)
-            .unwrap();
-        assert!(3 == locus_frequencies.len());
-        assert!(3 == locus_counts.len());
-        assert_eq!(
-            LocusFrequencies {
-                chromosome: "Chromosome1".to_owned(),
-                position: 1131021,
-                alleles_vector: vec!["T".to_owned(), "C".to_owned()],
-                matrix: Array2::from_shape_vec(
-                    (5, 2),
-                    vec![0.5, 0.5, 0.5, 0.5, 0.0, 1.0, 1. / 6., 5. / 6., 1.0, 0.0]
-                )
-                .unwrap()
-            },
-            locus_frequencies[2]
-        );
-        assert_eq!(
-            LocusCounts {
-                chromosome: "Chromosome1".to_owned(),
-                position: 1041321,
-                alleles_vector: vec!["T".to_owned(), "G".to_owned()],
-                matrix: Array2::from_shape_vec((5, 2), vec![20, 1, 12, 0, 15, 1, 22, 1, 26, 1])
-                    .unwrap()
-            },
-            locus_counts[1]
-        );
-        // Load
-        let (locus_frequencies_load, locus_counts_load) =
-            file_sync_phen.load(&filter_stats, false, &2).unwrap();
-        assert_eq!(5745, locus_frequencies_load.len());
-        assert_eq!(5745, locus_counts_load.len());
-        assert_eq!(locus_frequencies[0], locus_frequencies_load[0]);
-        assert_eq!(locus_frequencies[1], locus_frequencies_load[1]);
-        assert_eq!(locus_frequencies[2], locus_frequencies_load[2]);
-        assert_eq!(locus_counts[0], locus_counts_load[0]);
-        assert_eq!(locus_counts[1], locus_counts_load[1]);
-        assert_eq!(locus_counts[2], locus_counts_load[2]);
-        // Convert into genotypes and phenotypes
-        let genotypes_and_phenotypes: GenotypesAndPhenotypes = file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &2)
-            .unwrap();
-        assert_eq!(12669, genotypes_and_phenotypes.chromosome.len());
-        assert_eq!(12669, genotypes_and_phenotypes.allele.len());
-        assert_eq!(12669, genotypes_and_phenotypes.position.len());
-        assert_eq!(
-            (5, 12669),
-            genotypes_and_phenotypes
-                .intercept_and_allele_frequencies
-                .dim()
-        );
-    }
-
-    #[test]
-    fn test_sync_save() {
-        let file_sync_phen = FileSyncPhen {
-            filename_sync: "tests/test.sync".to_owned(),
-            pool_names: (0..5)
-                .map(|x| "Pop".to_owned() + &x.to_string()[..])
-                .collect(),
-            pool_sizes: vec![100.0; 5],
-            phen_matrix: Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap(),
-            test: "test".to_owned(),
-        };
-        let filter_stats = FilterStats {
-            remove_ns: true,
-            min_quality: 1.00,
-            min_coverage: 0,
-            min_allele_frequency: 0.01,
-            max_missingness_rate: 1.0,
-            pool_sizes: vec![20., 20., 20., 20., 20.],
-        };
-        // File sync phen struct
-        let fname_out_file_sync_phen_save = "tests/test-file_sync_phen-save.csv".to_owned();
-        let _ = file_sync_phen.write_csv(&filter_stats, false, &fname_out_file_sync_phen_save, &2);
-        let file = std::fs::File::open(fname_out_file_sync_phen_save).unwrap();
-        let reader = std::io::BufReader::new(file);
-        let mut vec_lines: Vec<String> = vec![];
-        for line in reader.lines() {
-            let line = line.unwrap();
-            vec_lines.push(line);
-        }
-        assert_eq!(
-            "#chr,pos,allele,Pop0,Pop1,Pop2,Pop3,Pop4".to_owned(),
-            vec_lines[0]
-        );
-        assert_eq!(
-            "Chromosome1,456527,T,0,0.333333,0.333333,0.2,0.142857".to_owned(),
-            vec_lines[1]
-        );
-        assert_eq!(
-            "Chromosome1,1131021,T,0.5,0.5,0,0.166667,1".to_owned(),
-            vec_lines[5]
-        );
-        assert_eq!(
-            "Chromosome1,25785190,C,0.615385,0.833333,0.777778,1,0.9375".to_owned(),
-            vec_lines[100]
-        );
-        // Genotypes and phenotypes struct
-        let genotypes_and_phenotypes: GenotypesAndPhenotypes = file_sync_phen
-            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &2)
-            .unwrap();
-        let fname_out_genotypes_and_phenotypes_save =
-            "tests/test-genotypes_and_phenotypes-save.csv".to_owned();
-        let _ = genotypes_and_phenotypes.write_csv(
-            &filter_stats,
-            false,
-            &fname_out_genotypes_and_phenotypes_save,
-            &2,
-        );
-        let file = std::fs::File::open(fname_out_genotypes_and_phenotypes_save).unwrap();
-        let reader = std::io::BufReader::new(file);
-        let mut vec_lines: Vec<String> = vec![];
-        for line in reader.lines() {
-            let line = line.unwrap();
-            vec_lines.push(line);
-        }
-        assert_eq!(
-            "#chr,pos,allele,Pop0,Pop1,Pop2,Pop3,Pop4".to_owned(),
-            vec_lines[0]
-        );
-        assert_eq!(
-            "Chromosome1,456527,T,0,0.333333,0.333333,0.2,0.142857".to_owned(),
-            vec_lines[1]
-        );
-        assert_eq!(
-            "Chromosome1,1131021,T,0.5,0.5,0,0.166667,1".to_owned(),
-            vec_lines[5]
-        );
-        assert_eq!(
-            "Chromosome1,25785190,C,0.615385,0.833333,0.777778,1,0.9375".to_owned(),
-            vec_lines[100]
-        );
-    }
-}
diff --git a/src/rust/src/vcf.rs b/src/rust/src/vcf.rs
deleted file mode 100644
index f5e4539..0000000
--- a/src/rust/src/vcf.rs
+++ /dev/null
@@ -1,696 +0,0 @@
-//! Vcf data (i.e. variant calling format canonical in human genetics) processing (`Parse` and `Filter` traits and `vcf_to_sync` format conversion function) and parallel I/O (`ChunkyReadAnalyseWrite` trait)
-use ndarray::prelude::*;
-use std::fs::{File, OpenOptions};
-use std::io::{self, prelude::*, BufReader, BufWriter, Error, ErrorKind, SeekFrom};
-use std::str;
-use std::sync::{Arc, Mutex};
-use std::time::{SystemTime, UNIX_EPOCH};
-
-use crate::helpers::*;
-use crate::structs_and_traits::*;
-
-impl Parse<VcfLine> for String {
-    /// Parse a line of vcf into a `VcfLine` struct corresponding to a locus, i.e. representing the allele counts of one or more pools in a single locus
-    fn lparse(&self) -> io::Result<Box<VcfLine>> {
-        let raw_locus_data: Box<Vec<&str>> = Box::new(self.split('\t').collect());
-        // Chromosome or scaffold name
-        let chromosome: String = raw_locus_data[0].to_owned();
-        // Position or locus coordinate in the genome assembly
-        let position = match raw_locus_data[1].parse::<u64>() {
-            Ok(x) => x,
-            Err(_) => return Err(Error::new(ErrorKind::Other, "Please check the format of the input vcf file as position is not a valid integer (i.e. u64).".to_owned())),
-        };
-        // Allele in the reference genome assembly
-        let reference_allele = raw_locus_data[3].to_owned().parse::<char>().unwrap_or('D');
-        // Alternative alleles
-        let alternative_alleles = raw_locus_data[4]
-            .split(',')
-            .map(|x| x.parse::<char>().unwrap_or('D'))
-            .collect::<Vec<char>>();
-        // Allele depths per pool
-        let mut allele_depths = vec![];
-        // First find the index of each genotype column (delimited by ":") refers to the allele depth, i.e. field "AD"
-        let idx = raw_locus_data[8]
-            .split(':')
-            .enumerate()
-            .filter(|(_idx, x)| x == &"AD")
-            .map(|(idx, _x)| idx)
-            .collect::<Vec<usize>>();
-        if idx.len() == 1 {
-            let idx = idx[0];
-            // Iterate across pools to extract the allele depths
-            for i in 9..raw_locus_data.len() {
-                let geno_data = raw_locus_data[i].split(':').collect::<Vec<&str>>();
-                allele_depths.push(if (geno_data[0] == "./.") || (geno_data[0] == ".|.") {
-                    // Missing data, i.e. coded as "./." which we are coding here as 0 depth across all alleles
-                    vec![0; 1 + alternative_alleles.len()]
-                } else {
-                    // Non-missing data
-                    // Initially set zero counts for all alleles including excluded alternative alleles
-                    let mut d = vec![0; 1 + alternative_alleles.len()];
-                    for (j, x) in geno_data[idx]
-                        .split(',')
-                        .collect::<Vec<&str>>()
-                        .into_iter()
-                        .enumerate() {
-                            d[j] = x.parse::<u64>().expect("Error parsing allele depths from the AD field in the input vcf file within the lparse() method for String to generate VcfLline struct.");
-                    }
-                    d
-                });
-            }
-        } else {
-            // Allowing for vcf without AD attribute but we need the GT attribute to extract diploid allele frequency genotype classes corresponding to 0.0, 0.5, and 1.0
-            // Setting the depth per allele to 1000X, assuming reasonable minimum depth does not come up beyond this level
-            let allele_depth = 1000_u64;
-            let idx = raw_locus_data[8]
-                .split(':')
-                .enumerate()
-                .filter(|(_idx, x)| x == &"GT")
-                .map(|(idx, _x)| idx)
-                .collect::<Vec<usize>>()[0];
-            // Iterate across pools to extract the allele depths
-            for i in 9..raw_locus_data.len() {
-                let geno_data = raw_locus_data[i].split(':').collect::<Vec<&str>>();
-                // println!("geno_data[idx]={:?}", geno_data[idx]);
-                let mut diploid_geno_vec: Vec<u64> = vec![0; 1 + alternative_alleles.len()];
-                if (geno_data[idx] != "./.") && (geno_data[idx] != ".|.") {
-                    let diploid_geno = geno_data[idx].split('|').collect::<Vec<&str>>();
-                    // If the genotype is unphased:
-                    let diploid_geno = if diploid_geno.len() == 1 {
-                        geno_data[idx]
-                            .split('/')
-                            .collect::<Vec<&str>>()
-                            .iter()
-                            .map(|&x| x.parse::<u64>().expect("Error parsing genotype calls from the GT field in the input vcf file within the lparse() method for String to generate VcfLline struct."))
-                            .collect::<Vec<u64>>()
-                    } else {
-                        diploid_geno
-                            .iter()
-                            .map(|&x| x.parse::<u64>().expect("Error parsing genotype calls from the GT field in the input vcf file within the lparse() method for String to generate VcfLline struct."))
-                            .collect::<Vec<u64>>()
-                    };
-                    // println!("diploid_geno={:?}", diploid_geno);
-                    for (j, g) in diploid_geno_vec.iter_mut().enumerate() {
-                        *g = diploid_geno.iter().fold(0_u64, |sum, &a| {
-                            if j as u64 == a {
-                                sum + allele_depth
-                            } else {
-                                sum
-                            }
-                        });
-                    }
-                }
-                allele_depths.push(diploid_geno_vec);
-            }
-        }
-        // Output VcfLine struct
-        let out = Box::new(VcfLine {
-            chromosome,
-            position,
-            reference_allele,
-            alternative_alleles,
-            allele_depths,
-        });
-        Ok(out)
-    }
-}
-
-impl Filter for VcfLine {
-    /// Parse the `VcfLine` into `AlleleCounts`
-    fn to_counts(&self) -> io::Result<Box<LocusCounts>> {
-        let mut alleles_vector = vec![self.reference_allele.to_string()];
-        for a in &self.alternative_alleles {
-            alleles_vector.push(a.to_string());
-        }
-        let n = self.allele_depths.len();
-        let m = self.allele_depths[0].len(); // All pools should have the same number of alleles in the current locus
-        let mut matrix: Array2<u64> = Array2::from_elem((n, m), 0);
-        for i in 0..n {
-            for j in 0..m {
-                matrix[(i, j)] = self.allele_depths[i][j];
-            }
-        }
-        Ok(Box::new(LocusCounts {
-            chromosome: self.chromosome.clone(),
-            position: self.position,
-            alleles_vector,
-            matrix,
-        }))
-    }
-
-    /// Parse `VcfLine` into `AlleleFrequencies`
-    fn to_frequencies(&self) -> io::Result<Box<LocusFrequencies>> {
-        let locus_counts = self.to_counts().expect(
-            "Error calling to_counts() within the to_frequencies() method for VcfLine struct.",
-        );
-        let n = locus_counts.matrix.nrows();
-        let p = locus_counts.matrix.ncols();
-        let row_sums = locus_counts.matrix.sum_axis(Axis(1)); // summation across the columns which means sum of all elements per row
-        let mut matrix: Array2<f64> = Array2::from_elem((n, p), 0.0);
-        for i in 0..n {
-            for j in 0..p {
-                matrix[(i, j)] = locus_counts.matrix[(i, j)] as f64 / row_sums[i] as f64;
-            }
-        }
-        Ok(Box::new(LocusFrequencies {
-            chromosome: locus_counts.chromosome,
-            position: locus_counts.position,
-            alleles_vector: locus_counts.alleles_vector,
-            matrix,
-        }))
-    }
-
-    /// Filter `VcfLine` by:
-    /// - removing the entire locus if the locus is fixed, i.e. only 1 allele was found or retained after filterings
-    /// Note that we are not removing alleles per locus if they fail the minimum allele frequency threshold, only if all alleles fail this threshold, i.e. when the locus is close to being fixed
-    fn filter(&mut self, filter_stats: &FilterStats) -> io::Result<&mut Self> {
-        // All the pools needs be have been covered at least min_coverage times
-        for i in 0..self.allele_depths.len() {
-            let c = &self.allele_depths[i].iter().sum::<u64>();
-            if c < &filter_stats.min_coverage {
-                return Err(Error::new(ErrorKind::Other, "Filtered out."));
-            }
-        }
-        // Filter by minimum allele frequency,
-        //// First convert the counts per pool into frequencies
-        let allele_frequencies = match self.to_frequencies() {
-            Ok(x) => x,
-            Err(_) => {
-                return Err(Error::new(
-                    ErrorKind::Other,
-                    "Cannot convert vcf line into allele frequencies.",
-                ))
-            }
-        };
-        // println!("allele_frequencies={:?}", &allele_frequencies);
-        // println!("self={:?}", self);
-        //// Next account for pool sizes to get the proper minmum allele frequency across all pools
-        let n = allele_frequencies.matrix.nrows();
-        let mut m = allele_frequencies.matrix.ncols();
-        let mut q: f64;
-        let mut j: usize = 1;
-        while j < m {
-            q = 0.0;
-            for i in 0..n {
-                q += allele_frequencies.matrix[(i, j)] * filter_stats.pool_sizes[i]
-                    / filter_stats.pool_sizes.iter().sum::<f64>();
-                // We've made sure the pool_sizes sum up to one in phen.rs
-            }
-            if (q < filter_stats.min_allele_frequency)
-                || (q > (1.00 - filter_stats.min_allele_frequency))
-            {
-                m -= 1;
-            } else {
-                j += 1;
-            }
-        }
-        // Filter the whole locus depending on whether or not we have retained at least 2 alleles
-        if m < 2 {
-            return Err(Error::new(ErrorKind::Other, "Filtered out."));
-        }
-        Ok(self)
-    }
-}
-
-/// Convert `VcfLine` into a string representing a line or locus in a `sync` file.
-pub fn vcf_to_sync(vcf_line: &mut VcfLine, filter_stats: &FilterStats) -> Option<String> {
-    // Filter
-    match vcf_line.filter(filter_stats) {
-        Ok(x) => x,
-        Err(_) => return None,
-    };
-    // Convert to counts
-    let locus_counts = match vcf_line.to_counts() {
-        Ok(x) => x,
-        Err(_) => return None,
-    };
-    let n = locus_counts.matrix.nrows();
-
-    // Setup the A:T:C:G:DEL:N allele counts per pool (where DEL refers to an indel where we are limited to a single class, i.e. multiple different indels at a locus are currently all just classified as if they were a single type of variant class)
-    let expected_alleles = ["A", "T", "C", "G", "D", "N"]
-        .iter()
-        .map(|&x| x.to_owned())
-        .collect::<Vec<String>>();
-    let mut atcgdn_matrix = Array2::from_elem((n, 6), 0);
-    for i in 0..n {
-        for j in 0..6 {
-            for k in 0..locus_counts.alleles_vector.len() {
-                if locus_counts.alleles_vector[k] == expected_alleles[j] {
-                    atcgdn_matrix[(i, j)] = locus_counts.matrix[(i, k)];
-                    break;
-                }
-            }
-        }
-    }
-
-    // Instantiate the output line
-    let mut x = vec![
-        vcf_line.chromosome.clone(),
-        vcf_line.position.to_string(),
-        vcf_line.reference_allele.to_string(),
-    ];
-    for i in 0..n {
-        x.push(
-            atcgdn_matrix
-                .row(i)
-                .into_iter()
-                .map(|w| w.to_string())
-                .collect::<Vec<String>>()
-                .join(":"),
-        );
-    }
-    let out = x.join("\t") + "\n";
-    Some(out)
-}
-
-impl ChunkyReadAnalyseWrite<VcfLine, fn(&mut VcfLine, &FilterStats) -> Option<String>> for FileVcf {
-    /// Load a `FileVcf`, process/analyse `VcfLine`s using some `function`, and output a file
-    /// This function performs the I/O and processing/analyses for a chunk of the input file, such that each chunk is allocated to a dedicated thread for computational efficiency
-    fn per_chunk(
-        &self,
-        start: &u64,
-        end: &u64,
-        outname_ndigits: &usize,
-        filter_stats: &FilterStats,
-        function: fn(&mut VcfLine, &FilterStats) -> Option<String>,
-    ) -> io::Result<String> {
-        let fname = self.filename.clone();
-        // Add leading zeros in front of the start file position so that we can sort the output files per chuck or thread properly
-        let mut start_string = start.to_string();
-        for _i in 0..(outname_ndigits - start_string.len()) {
-            start_string = "0".to_owned() + &start_string;
-        }
-        // Add leading zeros in front of the end file position so that we can sort the output files per chuck or thread properly
-        let mut end_string = end.to_string();
-        for _i in 0..(outname_ndigits - end_string.len()) {
-            end_string = "0".to_owned() + &end_string;
-        }
-        // Output temp file for the chunk
-        let fname_out = fname.to_owned() + "-" + &start_string + "-" + &end_string + ".sync.tmp";
-        let out = fname_out.clone();
-        let error_writing_file = "Unable to create file: ".to_owned() + &fname_out;
-        let error_writing_line = "Unable to write line into file: ".to_owned() + &fname_out;
-        let file_out = File::create(fname_out).expect(&error_writing_file);
-        let mut file_out = BufWriter::new(file_out);
-        // Input file chunk
-        let file = File::open(fname.clone()).expect(
-            "Error opening the input vcf file within the per_chuck() method for FileVcf struct.",
-        );
-        let mut reader = BufReader::new(file);
-        // Navigate to the start of the chunk
-        let mut i: u64 = *start;
-        reader.seek(SeekFrom::Start(*start)).expect(
-            "Error navigating the input vcf file within the per_chuck() method for FileVcf struct.",
-        );
-        // Read and parse until the end of the chunk
-        while i < *end {
-            // Instantiate the line
-            let mut line = String::new();
-            // Read the line which automatically movesthe cursor position to the next line
-            let _ = reader.read_line(&mut line).expect("Error reading the input vcf file within the per_chuck() method for FileVcf struct.");
-            // Find the new cursor position
-            i = reader.stream_position().expect("Error navigating the input vcf file within the per_chuck() method for FileVcf struct.");
-            // Remove trailing newline character in Unix-like (\n) and Windows (\r)
-            if line.ends_with('\n') {
-                line.pop();
-                if line.ends_with('\r') {
-                    line.pop();
-                }
-            }
-            // Ignore commented-out lines (i.e. '#' => 35)
-            if line.as_bytes()[0] == 35_u8 {
-                continue;
-            }
-            // Parse the vcf line
-            let mut vcf_line: Box<VcfLine> = line.lparse().expect(
-                &("Input file error, i.e. '".to_owned()
-                    + &fname
-                    + "' at line with the first 20 characters as: "
-                    + &line[0..20]
-                    + "."),
-            );
-            // Write the line
-            match function(&mut vcf_line, filter_stats) {
-                Some(x) => file_out.write_all(x.as_bytes()).expect(&error_writing_line),
-                None => continue,
-            };
-        }
-        Ok(out)
-    }
-
-    /// I/O and processing/analyses of a `FileVcf` using multiple threads for computational efficiency
-    /// Each thread is allocated a chunk of the file, and the number of threads is set by the user with a default of 2.
-    fn read_analyse_write(
-        &self,
-        filter_stats: &FilterStats,
-        out: &str,
-        n_threads: &usize,
-        function: fn(&mut VcfLine, &FilterStats) -> Option<String>,
-    ) -> io::Result<String> {
-        // Unpack vcf and pool names filenames
-        let fname = self.filename.clone();
-        // Output filename
-        let mut out = out.to_owned();
-        if out == *"" {
-            let time = SystemTime::now()
-                .duration_since(UNIX_EPOCH)
-                .expect("Error extracting time in UNIX_EPOCH within read_analyse_write() method for FileVcf struct.")
-                .as_secs_f64();
-            let bname = fname.split('.').rev().collect::<Vec<&str>>()[1..]
-                .iter()
-                .copied()
-                .rev()
-                .collect::<Vec<&str>>()
-                .join(".");
-            out = bname.to_owned() + "-" + &time.to_string() + ".sync";
-        }
-        // Instantiate output file
-        let error_writing_file = "Unable to create file: ".to_owned() + &out;
-        // let mut file_out = File::create(&out).expect(&error_writing_file);
-        let mut file_out = OpenOptions::new()
-            .create_new(true)
-            .write(true)
-            .append(false)
-            .open(&out)
-            .expect(&error_writing_file);
-        // Find the pool names from the last header line of the vcf file
-        let file = File::open(fname.clone()).expect("Error opening the input vcf file within the read_analyse_write() method for FileVcf struct.");
-        let reader = BufReader::new(file);
-        let mut pool_names: Vec<String> = vec![];
-        for line in reader.lines() {
-            let line = line.expect("Error reading the input vcf file within the read_analyse_write() method for FileVcf struct.");
-            if line.len() < 6 {
-                continue;
-            }
-            if &line[0..6] == "#CHROM" {
-                pool_names = line
-                    .split('\t')
-                    .enumerate()
-                    .filter(|&(idx, _x)| idx > 8)
-                    .map(|(_idx, x)| x.to_owned())
-                    .collect();
-            }
-        }
-        let names = if !pool_names.is_empty() {
-            pool_names.join("\t")
-        } else {
-            return Err(Error::new(ErrorKind::Other, "Pool names not found, please check the header line of the vcf file. Make sure `#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\tFORMAT...` header exists.".to_owned()));
-        };
-        // Find the positions where to split the file into n_threads pieces
-        let chunks = find_file_splits(&fname, n_threads).expect("Error calling find_file_splits() within the read_analyse_write() method for FileVcf struct.");
-        let n_threads = chunks.len() - 1;
-        let n_digits = chunks[n_threads].to_string().len();
-        println!("Chunks: {:?}", chunks);
-        // Tuple arguments of vcf2sync_chunks
-        // Instantiate thread object for parallel execution
-        let mut thread_objects = Vec::new();
-        // Vector holding all returns from vcf2sync_chunk()
-        let thread_ouputs: Arc<Mutex<Vec<String>>> = Arc::new(Mutex::new(Vec::new()));
-        // Mutated within each thread worker
-        // Making four separate threads calling the `search_for_word` function
-        for i in 0..n_threads {
-            // Clone vcf2sync_chunk parameters
-            let self_clone = self.clone();
-            let start = chunks[i];
-            let end = chunks[i + 1];
-            let outname_ndigits = n_digits;
-            let filter_stats = filter_stats.clone();
-            let thread_ouputs_clone = thread_ouputs.clone(); // Mutated within the current thread worker
-            let thread = std::thread::spawn(move || {
-                let fname_out_per_thread = self_clone
-                    .per_chunk(&start, &end, &outname_ndigits, &filter_stats, function)
-                    .expect("Error calling per_chunk() within the read_analyse_write() method for FileVcf struct.");
-                thread_ouputs_clone
-                    .lock()
-                    .expect("Error locking thread_ouputs_clone during multi-threaded execution of per_chunk() within the read_analyse_write() method for FileVcf struct.")
-                    .push(fname_out_per_thread);
-            });
-            thread_objects.push(thread);
-        }
-        // Waiting for all threads to finish
-        for thread in thread_objects {
-            thread.join().expect("Unknown thread error occurred.");
-        }
-        file_out
-            .write_all(("#chr\tpos\tref\t".to_owned() + &names + "\n").as_bytes())
-            .expect("Error writing the header line of the output file within the read_analyse_write() method for FileVcf struct.");
-        // Extract output filenames from each thread into a vector and sort them
-        let mut fnames_out: Vec<String> = Vec::new();
-        for f in thread_ouputs.lock().expect("Error unlocking the threads after multi-threaded execution of per_chunk() within the read_analyse_write() method for FileVcf struct.").iter() {
-            fnames_out.push(f.to_owned());
-        }
-        println!("fnames_out={:?}", fnames_out);
-        fnames_out.sort();
-        // Iterate across output files from each thread, and concatenate non-empty files
-        for f in fnames_out {
-            let mut file: File = File::open(&f).expect("Error opening output file per thread within the read_analyse_write() method for FileVcf struct.");
-            if file.metadata().expect("Error opening output file per thread within the read_analyse_write() method for FileVcf struct.").len() > 0 {
-                io::copy(&mut file, &mut file_out).expect("Error opening output file per thread within the read_analyse_write() method for FileVcf struct.");
-            }
-            // Clean-up: remove temporary output files from each thread
-            let error_deleting_file = "Unable to remove file: ".to_owned() + &f;
-            std::fs::remove_file(f).expect(&error_deleting_file);
-        }
-        Ok(out)
-    }
-}
-
-////////////////////////////////////////////////////////////////////////////////////////////////////////////
-#[cfg(test)]
-mod tests {
-    use super::*;
-    #[test]
-    fn test_vcf_methods() {
-        let line = "chrA\t323723\t.\tC\tA,CCT\t327.237\t.\tDP=469\tGT:PL:DP:AD\t0/0:0,24,239:7:7,0,1\t0/0:0,15,194:5:5,0,2\t0/1:42,0,61:6:4,2,1\t0/1:23,0,71:9:7,1,0\t0/1:75,0,132:14:6,5,2\t0/0:0,37,202:7:7,0,1\t0/0:0,15,235:5:5,0,1\t0/1:59,0,237:9:5,4,0\t0/0:0,27,123:9:9,0,0\t0/1:59,0,123:13:23,3,10".to_owned();
-        let vcf_line: VcfLine = *(line.lparse().unwrap());
-        println!("vcf_line={:?}", vcf_line);
-        assert_eq!(
-            vcf_line,
-            VcfLine {
-                chromosome: "chrA".to_owned(),
-                position: 323723,
-                reference_allele: 'C',
-                alternative_alleles: vec!['A', 'D'],
-                allele_depths: vec![
-                    vec![7, 0, 1],
-                    vec![5, 0, 2],
-                    vec![4, 2, 1],
-                    vec![7, 1, 0],
-                    vec![6, 5, 2],
-                    vec![7, 0, 1],
-                    vec![5, 0, 1],
-                    vec![5, 4, 0],
-                    vec![9, 0, 0],
-                    vec![23, 3, 10],
-                ]
-            }
-        );
-        let counts = *(vcf_line.to_counts().unwrap());
-        println!("counts={:?}", counts);
-        assert_eq!(
-            counts,
-            LocusCounts {
-                chromosome: "chrA".to_owned(),
-                position: 323723,
-                alleles_vector: vec!["C".to_owned(), "A".to_owned(), "D".to_owned()],
-                matrix: Array2::from_shape_vec(
-                    (10, 3),
-                    vec![
-                        7, 0, 1, 5, 0, 2, 4, 2, 1, 7, 1, 0, 6, 5, 2, 7, 0, 1, 5, 0, 1, 5, 4, 0, 9,
-                        0, 0, 23, 3, 10,
-                    ]
-                )
-                .unwrap()
-            }
-        );
-        let frequencies = *(vcf_line.to_frequencies().unwrap());
-        println!("frequencies={:?}", frequencies);
-        assert_eq!(
-            frequencies,
-            LocusFrequencies {
-                chromosome: "chrA".to_owned(),
-                position: 323723,
-                alleles_vector: vec!["C".to_owned(), "A".to_owned(), "D".to_owned()],
-                matrix: Array2::from_shape_vec(
-                    (10, 3),
-                    vec![
-                        7. / 8.,
-                        0. / 8.,
-                        1. / 8.,
-                        5. / 7.,
-                        0. / 7.,
-                        2. / 7.,
-                        4. / 7.,
-                        2. / 7.,
-                        1. / 7.,
-                        7. / 8.,
-                        1. / 8.,
-                        0. / 8.,
-                        6. / 13.,
-                        5. / 13.,
-                        2. / 13.,
-                        7. / 8.,
-                        0. / 8.,
-                        1. / 8.,
-                        5. / 6.,
-                        0. / 6.,
-                        1. / 6.,
-                        5. / 9.,
-                        4. / 9.,
-                        0. / 9.,
-                        9. / 9.,
-                        0. / 9.,
-                        0. / 9.,
-                        23. / 36.,
-                        3. / 36.,
-                        10. / 36.,
-                    ]
-                )
-                .unwrap()
-            }
-        );
-        let filter_stats_1 = FilterStats {
-            remove_ns: true,
-            min_quality: 0.005,
-            min_coverage: 1,
-            min_allele_frequency: 0.0,
-            max_missingness_rate: 0.0,
-            pool_sizes: vec![0.2; 10],
-        };
-        let filter_stats_2 = FilterStats {
-            remove_ns: true,
-            min_quality: 0.005,
-            min_coverage: 10,
-            min_allele_frequency: 0.0,
-            max_missingness_rate: 0.0,
-            pool_sizes: vec![0.2; 10],
-        };
-        let mut filtered_vcf_1 = vcf_line.clone();
-        let mut filtered_vcf_2 = vcf_line.clone();
-        println!(
-            "filtered_vcf_1={:?}",
-            filtered_vcf_1.filter(&filter_stats_1)
-        );
-        println!(
-            "filtered_vcf_2={:?}",
-            filtered_vcf_2.filter(&filter_stats_2)
-        );
-        filtered_vcf_1.filter(&filter_stats_1).unwrap();
-        let err = match filtered_vcf_2.filter(&filter_stats_2) {
-            Ok(_) => 0,
-            Err(_) => 1,
-        };
-        assert_eq!(filtered_vcf_1, vcf_line);
-        assert_eq!(err, 1);
-
-        let mut vcf_line_2_sync = vcf_line.clone();
-        let sync_line = vcf_to_sync(&mut vcf_line_2_sync, &filter_stats_1).unwrap();
-        println!("sync_line={:?}", sync_line);
-        assert_eq!(sync_line, "chrA\t323723\tC\t0:0:7:0:1:0\t0:0:5:0:2:0\t2:0:4:0:1:0\t1:0:7:0:0:0\t5:0:6:0:2:0\t0:0:7:0:1:0\t0:0:5:0:1:0\t4:0:5:0:0:0\t0:0:9:0:0:0\t3:0:23:0:10:0\n".to_owned());
-
-        let file_vcf = FileVcf {
-            filename: "./tests/test.vcf".to_owned(),
-        };
-        let output = file_vcf
-            .read_analyse_write(
-                &filter_stats_1,
-                &"./tests/test-vcf2sync.sync".to_owned(),
-                &2,
-                vcf_to_sync,
-            )
-            .unwrap();
-        println!("output={:?}", output);
-
-        // Test for individual diploid genotype without the AD (allele depth) attribute
-        let line = "chrA\t323723\t.\tC\tA,CCT\t327.237\t.\tDP=469\tGT\t0/0\t0/1\t0/2\t1/1\t1/2\t2/2\t0|0\t0|1\t1|2\t2|2".to_owned();
-        let vcf_line: VcfLine = *(line.lparse().unwrap());
-        println!("vcf_line={:?}", vcf_line);
-        assert_eq!(
-            vcf_line,
-            VcfLine {
-                chromosome: "chrA".to_owned(),
-                position: 323723,
-                reference_allele: 'C',
-                alternative_alleles: vec!['A', 'D'],
-                allele_depths: vec![
-                    vec![2000, 0000, 0000],
-                    vec![1000, 1000, 0000],
-                    vec![1000, 0000, 1000],
-                    vec![0000, 2000, 0000],
-                    vec![0000, 1000, 1000],
-                    vec![0000, 0000, 2000],
-                    vec![2000, 0000, 0000],
-                    vec![1000, 1000, 0000],
-                    vec![0000, 1000, 1000],
-                    vec![0000, 0000, 2000],
-                ]
-            }
-        );
-        let counts = *(vcf_line.to_counts().unwrap());
-        println!("counts={:?}", counts);
-        assert_eq!(
-            counts,
-            LocusCounts {
-                chromosome: "chrA".to_owned(),
-                position: 323723,
-                alleles_vector: vec!["C".to_owned(), "A".to_owned(), "D".to_owned()],
-                matrix: Array2::from_shape_vec(
-                    (10, 3),
-                    vec![
-                        2000, 0000, 0000, 1000, 1000, 0000, 1000, 0000, 1000, 0000, 2000, 0000,
-                        0000, 1000, 1000, 0000, 0000, 2000, 2000, 0000, 0000, 1000, 1000, 0000,
-                        0000, 1000, 1000, 0000, 0000, 2000,
-                    ]
-                )
-                .unwrap()
-            }
-        );
-        let frequencies = *(vcf_line.to_frequencies().unwrap());
-        println!("frequencies={:?}", frequencies);
-        assert_eq!(
-            frequencies,
-            LocusFrequencies {
-                chromosome: "chrA".to_owned(),
-                position: 323723,
-                alleles_vector: vec!["C".to_owned(), "A".to_owned(), "D".to_owned()],
-                matrix: Array2::from_shape_vec(
-                    (10, 3),
-                    vec![
-                        2000. / 2000.,
-                        0000. / 2000.,
-                        0000. / 2000.,
-                        1000. / 2000.,
-                        1000. / 2000.,
-                        0000. / 2000.,
-                        1000. / 2000.,
-                        0000. / 2000.,
-                        1000. / 2000.,
-                        0000. / 2000.,
-                        2000. / 2000.,
-                        0000. / 2000.,
-                        0000. / 2000.,
-                        1000. / 2000.,
-                        1000. / 2000.,
-                        0000. / 2000.,
-                        0000. / 2000.,
-                        2000. / 2000.,
-                        2000. / 2000.,
-                        0000. / 2000.,
-                        0000. / 2000.,
-                        1000. / 2000.,
-                        1000. / 2000.,
-                        0000. / 2000.,
-                        0000. / 2000.,
-                        1000. / 2000.,
-                        1000. / 2000.,
-                        0000. / 2000.,
-                        0000. / 2000.,
-                        2000. / 2000.,
-                    ]
-                )
-                .unwrap()
-            }
-        );
-        // assert_eq!(0, 1);
-    }
-}
diff --git a/src/rust/tests/test.csv b/src/rust/tests/test.csv
deleted file mode 100644
index c8189a4..0000000
--- a/src/rust/tests/test.csv
+++ /dev/null
@@ -1,12669 +0,0 @@
-#chr,pos,allele,Pop0,Pop1,Pop2,Pop3,Pop4
-Chromosome1,456527,T,NA,0.333333,0.333333,0.2,0.142857
-Chromosome1,456527,C,NA,0.666667,0.666667,0.8,0.857143
-Chromosome1,1041321,T,0.952381,NA,0.9375,0.956522,0.962963
-Chromosome1,1041321,G,0.047619,NA,0.0625,0.043478,0.037037
-Chromosome1,1131021,T,0.5,0.5,0,0.166667,1
-Chromosome1,1131021,C,0.5,0.5,1,0.833333,0
-Chromosome1,1133215,A,0,0.333333,0,0,0
-Chromosome1,1133215,C,1,0.666667,1,1,1
-Chromosome1,1133226,A,0,0,0,0.1,0
-Chromosome1,1133226,T,1,1,1,0.9,1
-Chromosome1,1133415,A,0.2,0,0.214286,0.2,0.285714
-Chromosome1,1133415,C,0.8,1,0.785714,0.8,0.714286
-Chromosome1,1133880,A,0.733333,0.666667,0.727273,0.5,0.7
-Chromosome1,1133880,C,0.266667,0.333333,0.272727,0.5,0.3
-Chromosome1,1133952,T,0.928571,1,1,1,1
-Chromosome1,1133952,C,0.071429,0,0,0,0
-Chromosome1,1134063,T,0,0,0.090909,0,0
-Chromosome1,1134063,C,0.066667,0,0,0.5,0.166667
-Chromosome1,1134063,G,0.933333,1,0.909091,0.5,0.833333
-Chromosome1,3356561,T,0.2,0.2,0,0.25,0.5
-Chromosome1,3356561,C,0.8,0.8,1,0.75,0.5
-Chromosome1,3425523,A,1,0,0.333333,0.25,0.5
-Chromosome1,3425523,G,0,1,0.666667,0.75,0.5
-Chromosome1,3425579,A,0,1,0.5,0.75,0.5
-Chromosome1,3425579,G,1,0,0.5,0.25,0.5
-Chromosome1,4167318,T,0,0,0.0625,0,0
-Chromosome1,4167318,C,1,1,0.9375,1,1
-Chromosome1,4167526,T,0.727273,0.9,0.941176,1,0.947368
-Chromosome1,4167526,G,0.272727,0.1,0.058824,0,0.052632
-Chromosome1,4169383,C,0.666667,0.25,0.4,0,0.571429
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-Chromosome4,207215519,T,0.307692,0.235294,0.428571,0.08,0.35
-Chromosome4,207215519,C,0.076923,0.176471,0.238095,0.08,0.05
-Chromosome4,207215519,G,0.615385,0.588235,0.333333,0.84,0.6
-Chromosome4,207215520,C,0.923077,0.8125,0.956522,0.928571,0.9
-Chromosome4,207215520,G,0.076923,0.1875,0.043478,0.071429,0.1
-Chromosome4,207215523,C,1,0.944444,0.952381,0.933333,0.909091
-Chromosome4,207215523,G,0,0.055556,0.047619,0.066667,0.090909
-Chromosome4,207215530,T,0.625,0.473684,0.545455,0.586207,0.636364
-Chromosome4,207215530,C,0.375,0.526316,0.454545,0.413793,0.363636
-Chromosome4,207215531,C,0.034483,0.105263,0.043478,0.129032,0
-Chromosome4,207215531,G,0.965517,0.894737,0.956522,0.870968,1
-Chromosome4,207215538,A,0.892857,1,1,0.885714,0.913043
-Chromosome4,207215538,G,0.107143,0,0,0.114286,0.086957
-Chromosome4,207215546,A,0,0.105263,0,0,0
-Chromosome4,207215546,T,0,0,0.041667,0.058824,0.047619
-Chromosome4,207215546,C,1,0.894737,0.958333,0.941176,0.952381
-Chromosome4,207215547,A,0.923077,0.888889,1,0.875,0.954545
-Chromosome4,207215547,C,0.038462,0.055556,0,0.03125,0
-Chromosome4,207215547,G,0.038462,0.055556,0,0.09375,0.045455
-Chromosome4,207215548,A,0.035714,0.210526,0.090909,0,0.083333
-Chromosome4,207215548,G,0.964286,0.789474,0.909091,1,0.916667
-Chromosome4,207215556,A,0,0.05,0,0.027778,0.043478
-Chromosome4,207215556,G,1,0.95,1,0.972222,0.956522
-Chromosome4,207215571,A,0,0.117647,0,0,0.045455
-Chromosome4,207215571,T,0.296296,0.117647,0.115385,0.305556,0.136364
-Chromosome4,207215571,C,0.703704,0.764706,0.884615,0.694444,0.818182
-Chromosome4,207215572,A,0.346154,0.411765,0.391304,0.388889,0.272727
-Chromosome4,207215572,T,0.653846,0.588235,0.608696,0.611111,0.727273
-Chromosome4,207215574,T,0.035714,0,0.041667,0.027778,0.083333
-Chromosome4,207215574,C,0,0.0625,0,0.027778,0.125
-Chromosome4,207215574,G,0.964286,0.9375,0.958333,0.944444,0.791667
-Chromosome4,207215577,A,0.2,0.277778,0.307692,0.2,0.217391
-Chromosome4,207215577,T,0,0,0.038462,0.028571,0
-Chromosome4,207215577,C,0.8,0.722222,0.653846,0.771429,0.782609
-Chromosome4,207215581,A,0.793103,0.823529,0.791667,0.852941,0.695652
-Chromosome4,207215581,T,0.206897,0.176471,0.208333,0.147059,0.304348
-Chromosome4,207215585,T,0.068966,0.058824,0.04,0.277778,0.125
-Chromosome4,207215585,C,0.931034,0.941176,0.96,0.722222,0.875
-Chromosome4,207215586,A,0.08,0.058824,0.16,0.114286,0.130435
-Chromosome4,207215586,G,0.92,0.941176,0.84,0.885714,0.869565
-Chromosome4,207215587,A,0,0.055556,0.12,0.171429,0.045455
-Chromosome4,207215587,T,0.083333,0,0.08,0.2,0.136364
-Chromosome4,207215587,C,0.916667,0.944444,0.8,0.628571,0.818182
-Chromosome4,207215588,A,0.52,0.470588,0.565217,0.558824,0.73913
-Chromosome4,207215588,T,0.48,0.529412,0.434783,0.441176,0.26087
-Chromosome4,207215594,A,0.041667,0,0,0.027778,0
-Chromosome4,207215594,T,0.208333,0.095238,0.115385,0.027778,0.047619
-Chromosome4,207215594,C,0.75,0.904762,0.884615,0.916667,0.904762
-Chromosome4,207215594,G,0,0,0,0.027778,0.047619
-Chromosome4,207215595,A,0.708333,0.772727,0.714286,0.685714,0.8
-Chromosome4,207215595,T,0.291667,0.227273,0.214286,0.285714,0.15
-Chromosome4,207215595,G,0,0,0.071429,0.028571,0.05
-Chromosome4,207215596,A,0.75,0.666667,0.692308,0.6,0.809524
-Chromosome4,207215596,G,0.25,0.333333,0.307692,0.4,0.190476
-Chromosome4,207215599,T,0,0.047619,0.074074,0,0
-Chromosome4,207215599,C,0.958333,0.904762,0.925926,0.888889,1
-Chromosome4,207215599,G,0.041667,0.047619,0,0.111111,0
-Chromosome4,207215601,T,0,0.045455,0,0.027027,0
-Chromosome4,207215601,C,1,0.818182,0.892857,0.891892,0.954545
-Chromosome4,207215601,G,0,0.136364,0.107143,0.081081,0.045455
-Chromosome4,207215602,T,1,0.952381,0.884615,0.973684,0.952381
-Chromosome4,207215602,C,0,0.047619,0,0.026316,0.047619
-Chromosome4,207215602,G,0,0,0.115385,0,0
-Chromosome4,207215606,A,0,0.045455,0.038462,0,0.047619
-Chromosome4,207215606,T,0.26087,0.272727,0.192308,0.166667,0.047619
-Chromosome4,207215606,C,0.73913,0.681818,0.730769,0.805556,0.857143
-Chromosome4,207215606,G,0,0,0.038462,0.027778,0.047619
-Chromosome4,207215607,A,0.090909,0.090909,0.08,0.189189,0.157895
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-Chromosome4,207215607,G,0.863636,0.863636,0.88,0.72973,0.842105
-Chromosome4,207215613,A,0.157895,0.130435,0.130435,0.108108,0.1
-Chromosome4,207215613,T,0.315789,0.478261,0.347826,0.459459,0.4
-Chromosome4,207215613,C,0.526316,0.347826,0.521739,0.432432,0.45
-Chromosome4,207215613,G,0,0.043478,0,0,0.05
-Chromosome4,207215615,A,0,0.090909,0,0.054054,0.05
-Chromosome4,207215615,G,1,0.909091,1,0.945946,0.95
-Chromosome4,207215616,A,0,0,0.04,0.027027,0.047619
-Chromosome4,207215616,C,1,1,0.96,0.972973,0.952381
-Chromosome4,207215620,T,0,0.190476,0.148148,0.147059,0.105263
-Chromosome4,207215620,C,1,0.809524,0.851852,0.852941,0.894737
-Chromosome4,207215623,A,0.904762,0.818182,0.925926,0.777778,0.85
-Chromosome4,207215623,T,0.095238,0.181818,0.074074,0.222222,0.15
-Chromosome4,207215628,T,0.227273,0.190476,0.16,0.083333,0.095238
-Chromosome4,207215628,C,0.772727,0.809524,0.84,0.916667,0.904762
-Chromosome4,207215629,A,0.052632,0.095238,0.090909,0.055556,0.210526
-Chromosome4,207215629,T,0.052632,0.047619,0.136364,0.138889,0.052632
-Chromosome4,207215629,C,0.894737,0.857143,0.772727,0.805556,0.736842
-Chromosome4,207215630,T,0.375,0.095238,0.1,0.054054,0.090909
-Chromosome4,207215630,G,0.625,0.904762,0.9,0.945946,0.909091
-Chromosome4,207215637,T,0.133333,0.052632,0.105263,0.142857,0.055556
-Chromosome4,207215637,G,0.866667,0.947368,0.894737,0.857143,0.944444
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-Chromosome4,207215648,T,0,0.071429,0,0,0.111111
-Chromosome4,207215648,C,0.857143,0.928571,0.866667,0.88,0.777778
-Chromosome4,207215648,G,0.142857,0,0.066667,0.12,0.111111
-Chromosome4,207215649,A,0,0.357143,0.285714,0.115385,0.125
-Chromosome4,207215649,T,0,0.142857,0,0.038462,0
-Chromosome4,207215649,C,0.142857,0.071429,0.071429,0.115385,0
-Chromosome4,207215649,G,0.857143,0.428571,0.642857,0.730769,0.875
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-Chromosome4,207215651,T,0,0.071429,0,0,0
-Chromosome4,207215651,C,0.857143,0.857143,1,1,0.888889
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-Chromosome4,207215652,T,0.142857,0,0,0,0.1
-Chromosome4,207215652,G,0.857143,0.615385,0.571429,0.76,0.9
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-Chromosome4,207215653,T,0,0,0.066667,0.043478,0.1
-Chromosome4,207215653,C,1,0.846154,0.866667,0.956522,0.9
-Chromosome4,207215659,T,0.142857,0.076923,0.066667,0.115385,0
-Chromosome4,207215659,C,0.857143,0.923077,0.933333,0.884615,1
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-Chromosome4,207215691,T,0.666667,0.75,0.666667,0.3,0
-Chromosome4,207215691,C,0.333333,0.25,0.333333,0.7,1
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-Chromosome4,207215774,T,1,0.416667,0.75,0.888889,0.666667
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-Chromosome4,207215786,A,0,0.230769,0.75,0.214286,0.5
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-Chromosome4,207215790,T,0.5,0.090909,0,0.133333,0
-Chromosome4,207215790,C,0.5,0.454545,0.5,0.6,0.5
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-Chromosome4,207215823,A,0.285714,0.133333,0.875,0.444444,0.25
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-Chromosome4,207215969,G,0.5,0.5,0.25,0.571429,0.5
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-Chromosome4,207251067,T,0.333333,0.333333,0.6,1,0.5
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-Chromosome4,207251486,C,0.714286,0.6,0.583333,0.333333,0.25
-Chromosome4,207251547,T,0.285714,0.111111,0.090909,0.166667,0.1
-Chromosome4,207251547,C,0.714286,0.888889,0.909091,0.833333,0.9
-Chromosome4,207251554,A,0.8,0.75,1,0.692308,0.909091
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diff --git a/src/rust/tests/test.pileup b/src/rust/tests/test.pileup
deleted file mode 100644
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-Chromosome1	36253881	A	1	,-1t	J	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J
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-Chromosome1	122693090	A	0	*	*	2	tg	JJ	3	ggg	JJJ	3	ggt	FJJ	1	,	J
-Chromosome1	122737022	A	1	.	A	1	C	J	2	C.	JA	0	*	*	0	*	*
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-Chromosome1	122737077	C	1	.	s	1	T	s	2	T.	sJ	0	*	*	0	*	*
-Chromosome1	122737086	T	1	.	s	1	C	s	2	C.	sJ	0	*	*	0	*	*
-Chromosome1	122737104	G	1	.	s	1	T	s	2	T.	sF	0	*	*	0	*	*
-Chromosome1	122737105	A	1	.	s	1	G	s	2	G.	sJ	0	*	*	0	*	*
-Chromosome1	122737112	G	1	.	s	1	C	o	2	C.	sJ	0	*	*	0	*	*
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-Chromosome1	122737189	A	1	,	J	1	g	J	2	g,	JF	0	*	*	0	*	*
-Chromosome1	122737192	A	1	,	J	1	g	J	2	g,	JJ	0	*	*	0	*	*
-Chromosome1	122809865	C	0	*	*	1	,	J	4	t,,,	JFAA	0	*	*	1	t	<
-Chromosome1	122821858	T	0	*	*	1	^I.	A	3	A^F.^F.	AAA	0	*	*	3	A^I.^B.	JAA
-Chromosome1	122821994	A	0	*	*	2	C.	JJ	2	..	JJ	0	*	*	2	.G	JF
-Chromosome1	122822048	C	0	*	*	2	.a	o<	2	,,	FJ	0	*	*	4	.,,a	VJJF
-Chromosome1	122822057	G	0	*	*	2	A$,	FJ	3	,,a	JJA	0	*	*	4	,,,,	JAJJ
-Chromosome1	122822109	C	0	*	*	2	a,	FJ	3	,,,	JJ7	0	*	*	4	.a,,	VJJJ
-Chromosome1	122822116	A	0	*	*	2	,,	JF	3	,t,	JJ<	0	*	*	4	.,,t	VJJJ
-Chromosome1	122822134	C	0	*	*	2	,a	JJ	3	aaa	JJF	0	*	*	4	,,aa	JJJJ
-Chromosome1	122822135	T	0	*	*	2	,c	JJ	2	cc	JJ	0	*	*	4	,,cc	JJJJ
-Chromosome1	122822138	T	0	*	*	2	,a	JJ	3	aaa	JJJ	0	*	*	4	,,ag	JJJJ
-Chromosome1	122822161	A	0	*	*	1	,$	>	2	gg	JJ	0	*	*	4	,$,$gg	>>JJ
-Chromosome1	123025979	A	0	*	*	0	*	*	5	,,g,,	JJJJF	1	,	J	2	,g	JJ
-Chromosome1	123026046	G	0	*	*	0	*	*	5	,a,,,	JJJJJ	1	,	J	2	a,	JJ
-Chromosome1	123159517	A	0	*	*	1	.-1G	J	2	..-1G	JJ	1	.	J	0	*	*
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-Chromosome1	123159649	T	0	*	*	1	C	J	2	.C	JJ	1	.	J	0	*	*
-Chromosome1	123159668	T	0	*	*	1	G	s	2	G,	oF	1	,	J	0	*	*
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-Chromosome1	123159709	T	0	*	*	1	c	J	2	,c	JJ	1	,	J	0	*	*
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-Chromosome1	123159793	A	0	*	*	1	g	J	2	,g	JJ	1	,	J	0	*	*
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-Chromosome1	123165505	A	1	*	J	0	*	*	2	..	os	0	*	*	2	*,	JJ
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-Chromosome1	123328596	G	0	*	*	0	*	*	1	t	<	2	,,	JJ	2	a,	FJ
-Chromosome1	123486658	C	1	,	J	1	t	J	4	,t,,	JJJJ	2	.t	sJ	3	,,t	JJF
-Chromosome1	123508882	C	5	,,,t,	JJJJJ	4	,,,,	JAJF	5	,t,,,	JJJFJ	2	,t	JJ	4	,,t,	JJJJ
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-Chromosome1	123714683	G	0	*	*	2	..	AJ	1	A	A	0	*	*	2	A.	AJ
-Chromosome1	123715039	T	0	*	*	2	,,	A<	1	,-1a	J	0	*	*	3	,-1a,,	JJJ
-Chromosome1	123875663	A	0	*	*	1	G	J	2	G.	JJ	1	.	J	0	*	*
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-Chromosome1	123877250	T	2	c,	FJ	2	.,	sA	0	*	*	1	c	J	0	*	*
-Chromosome1	123920430	G	1	,-1a	J	0	*	*	2	,-2aa,-2aa	JJ	1	,-1a	J	1	,-1a	<
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-Chromosome1	125083535	A	7	.....G.	JJJAJJ<	5	.....	JJJJF	7	G......	JJFJJJJ	10	.........G	JJoFJJ<FJJ	9	.G.......	JJJJJJ<7J
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-Chromosome1	128645336	T	0	*	*	2	C,	F<	1	c	s	2	C.	JJ	0	*	*
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-Chromosome1	128734229	A	0	*	*	1	,	s	2	,t	JF	1	t	J	0	*	*
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-Chromosome1	135207632	T	612	.,........G.....................................................................................................................................................................................................................................................................................................................G.......................................................................................................G.........G.................................................................................................................................................................................	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-Chromosome1	135207633	C	688	.,..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	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-Chromosome1	135207635	T	633	.,......................................................................................................................................................................................................................................................................................................................................................................................................................G................................................................................................................................................................................................................................	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-Chromosome1	135207651	T	509	,................................G......................G..................G..........G...............................................G............G.................................................................................................................................G.....................................................................G..G..............................................................................................................................................................	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-Chromosome1	135207662	C	704	.,.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................,....	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-Chromosome1	135207666	C	685	.,.........................................................................................................................................................................................................................................................................................................................................................................................T................T................................................................................................................................................................................................................................................................................................	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-Chromosome1	135207668	A	585	.,......................................................................................................................G.....................................................................................................................................................................................................C.....................................................................................................................................................................................................................................................................,....	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-Chromosome1	135207670	A	575	.,.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	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-Chromosome1	135207671	T	599	.,................................................................................G......................................................................................................................................................................................................................................C.............................................................................................................................................................................................................................................................................................	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-Chromosome1	193396808	G	139	...............................................................T.........................C.................................................	JJJJJJAJJJJJJJJJJJJJJJ<JJJJ<JJJJJJJJJJJJJ77JJJJAJJJFJJJJJJJJFAJJJJFJJJJJJJJFJJJFJJ<F7JJFJJAJJJJJJJJJJJJJ<JJJFFFJJFJJJJJJJ<JFJF<JAJJJJJJJ7JJ	46	..............................................	AFJFJAJJJFJ7AJJJFFFJJJJJJ7JJAJ<JJJJJFJJFJJJJJ<	122	.............................................................T............................................................	FJFJJJJJJJJJJFFJFJJJF<JJJFJFJJJJJJF7JJJJJJJJJJJJA<JJJJJ7AFJJJJJJFJJJJJJ<J<JFJJJJJ7JFJJJJFJJJ7J7JJJJJJJJJJJJJJ7<<JJJFJJJJFJ	77	..........................................T..................................	JJJF7JJJJAJJJJFJFJJJFJJJAJJJJJJAFJJJJFJJAJFJJ<JJJ<J<JJJJJJJJJJJJJJJJJJJJJJJJJ	139	............................................T............................................................................T................^9.	JJJJJJJJJJFJJJFJF<JJJJJFJJJFJJFF<<JJJJFFJJJJJFAFJJJJJFJJFJJJFFJFJJJJJAJJJJAJJJJJJJJJAFJJFJJJJJJJJJJJJJJJFJJFJJAJJJJJ<JFJ7JJJJJJJJJJJFJJFFJA
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-Chromosome1	289173003	A	3	g,,	JFA	1	g	J	0	*	*	0	*	*	1	.$	`
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-Chromosome1	289331918	C	3	..T	JJJ	2	T.	FJ	2	..	JJ	0	*	*	0	*	*
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-Chromosome1	289605979	T	2	,a	JJ	1	,	J	0	*	*	2	a,	JA	0	*	*
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-Chromosome2	6694433	C	4	,,,,	AJJJ	1	t	J	0	*	*	0	*	*	2	,t	JJ
-Chromosome2	6694435	C	4	,,,,	FJJF	1	t	J	0	*	*	0	*	*	2	,t	FJ
-Chromosome2	6822130	T	9	,c,,,,,,,	7FFJJJFJ7	5	,,,,,	AJJJ7	5	c,,cc	JJJFJ	0	*	*	5	,,,c,	JJFJF
-Chromosome2	6866419	A	0	*	*	2	TT	JJ	1	.	F	0	*	*	2	T.	JF
-Chromosome2	6866446	G	0	*	*	2	CC	ss	1	.	s	0	*	*	2	C.	Rs
-Chromosome2	6866449	G	0	*	*	2	TT	sk	1	.	s	0	*	*	2	T.	Vs
-Chromosome2	6866458	A	0	*	*	2	CC	ss	1	.	s	0	*	*	2	C.	Ws
-Chromosome2	6866524	C	0	*	*	2	TT	ss	1	.	s	0	*	*	2	T.	js
-Chromosome2	6866539	G	0	*	*	2	,,	JJ	1	C	s	0	*	*	2	C,	s<
-Chromosome2	6866571	G	0	*	*	2	aa	JJ	1	,	J	0	*	*	2	a,	JJ
-Chromosome2	6912306	G	1	.	A	0	*	*	0	*	*	3	..A	sJJ	1	A	J
-Chromosome2	6912310	C	1	.	J	0	*	*	0	*	*	3	.TT	sJJ	1	T	J
-Chromosome2	6912312	G	1	.	F	0	*	*	0	*	*	3	..C	sJJ	1	C	J
-Chromosome2	6912402	A	0	*	*	0	*	*	1	,	J	3	.GG	sFF	1	G	G
-Chromosome2	6912413	G	0	*	*	0	*	*	1	,	J	3	..A	sAF	1	A	J
-Chromosome2	6912425	C	0	*	*	0	*	*	1	,	J	3	..G	s7F	1	G	\
-Chromosome2	7034916	C	2	.,	s<	1	a	J	0	*	*	0	*	*	2	,t	JJ
-Chromosome2	7086245	G	0	*	*	0	*	*	1	.	J	1	A	J	2	A.	J7
-Chromosome2	7105498	T	0	*	*	3	..A	JJ7	0	*	*	2	AA	JJ	1	.	J
-Chromosome2	7105638	C	0	*	*	3	gg,	JJA	0	*	*	2	,,	JJ	1	g	<
-Chromosome2	7105674	A	0	*	*	3	gg,	JJA	0	*	*	2	,,	JJ	1	g	A
-Chromosome2	7238662	G	0	*	*	3	.T.	FoJ	1	A	<	0	*	*	1	.	J
-Chromosome2	7296442	A	0	*	*	0	*	*	1	,	F	1	.-1G	J	1	.-1G	J
-Chromosome2	7468821	A	1	G	J	0	*	*	0	*	*	2	G.	Js	1	.	J
-Chromosome2	7588286	G	2	C.	JJ	1	C	F	0	*	*	1	,	J	0	*	*
-Chromosome2	7644679	A	1	T	s	1	C	s	1	.	s	0	*	*	2	T.	Ce
-Chromosome2	7663081	T	0	*	*	2	.,	JF	2	c,	JJ	1	c	J	0	*	*
-Chromosome2	7663082	A	0	*	*	2	.,	JF	2	t,	JJ	1	t	J	0	*	*
-Chromosome2	7702328	C	0	*	*	3	A.A	JsJ	0	*	*	1	.	J	1	A	J
-Chromosome2	7702376	A	0	*	*	3	G.G	`os	0	*	*	1	.	s	1	G	o
-Chromosome2	7702382	A	0	*	*	3	G.G	sss	0	*	*	1	.	s	1	G	s
-Chromosome2	7702427	A	0	*	*	3	G.G	jss	0	*	*	1	.	s	1	G	s
-Chromosome2	7702442	A	0	*	*	3	,gg	JJJ	0	*	*	1	,	J	1	g	J
-Chromosome2	7702447	A	0	*	*	3	,gg	JJJ	0	*	*	1	,	J	1	g	J
-Chromosome2	7702449	T	0	*	*	3	,cc	JJJ	0	*	*	1	,	J	1	c	J
-Chromosome2	7703233	T	1	.	J	0	*	*	2	.C	oJ	0	*	*	1	C	F
-Chromosome2	7703243	G	1	.	<	0	*	*	2	.A	sJ	0	*	*	1	A	F
-Chromosome2	7703271	A	1	.	J	0	*	*	2	.T	jJ	0	*	*	1	T	J
-Chromosome2	7703291	T	1	.	J	0	*	*	2	.C	RF	0	*	*	1	C	J
-Chromosome2	7703298	A	1	.	F	0	*	*	2	.G	oF	0	*	*	1	G	F
-Chromosome2	7717944	G	0	*	*	1	,-1t	A	0	*	*	2	,,-1t	J7	3	.-1T,-1t,-1t	MJF
-Chromosome2	7750995	C	0	*	*	1	a	J	2	,a	JJ	1	,	J	0	*	*
-Chromosome2	7761038	A	1	,-1g	J	0	*	*	1	,-1g	J	1	,	F	0	*	*
-Chromosome2	7853787	C	0	*	*	1	,-8acagtata	J	1	,-8acagtata	J	0	*	*	1	,	F
-Chromosome2	7857334	T	1	.-4CATG	U	0	*	*	1	.-4CATG	U	0	*	*	1	,	J
-Chromosome2	8110343	T	1	G	A	2	G,	As	0	*	*	0	*	*	1	.	s
-Chromosome2	8435957	C	2	.A	JJ	3	AA.	JJJ	7	.....A.	J<JJJJ7	3	...	JJJ	6	.G...G	JJJJJJ
-Chromosome2	8469693	T	0	*	*	1	.-7AACCCTA	9	1	.	e	3	.-1A..	\HA	0	*	*
-Chromosome2	8469724	A	0	*	*	1	.	J	1	,-6aaccct	@	3	,-6aaccct,,	<FJ	0	*	*
-Chromosome2	8547203	T	2	G.	JF	0	*	*	1	G	J	0	*	*	1	.	J
-Chromosome2	8577563	G	4	,,,a	JJJJ	0	*	*	0	*	*	1	,	J	1	t	J
-Chromosome2	8602704	T	0	*	*	1	.	A	0	*	*	2	c.	Js	1	C	o
-Chromosome2	8653681	A	0	*	*	0	*	*	1	.	s	1	.-1T	s	1	,-1t	J
-Chromosome2	8893077	C	0	*	*	1	T	W	2	..	s`	2	T.	Vs	2	.T	ss
-Chromosome2	8928865	A	1	G	A	1	.	<	0	*	*	0	*	*	2	.G	JJ
-Chromosome2	8928937	T	1	.	7	1	C	J	0	*	*	0	*	*	2	.C	JF
-Chromosome2	8980112	C	0	*	*	2	at	FA	1	,	J	0	*	*	1	t	J
-Chromosome2	8980129	G	0	*	*	2	,,	JA	2	a,	FJ	0	*	*	1	a	F
-Chromosome2	9015074	C	0	*	*	0	*	*	2	.T	JJ	1	T	J	2	TG	JJ
-Chromosome2	9015081	C	0	*	*	0	*	*	2	.-1A.	FJ	1	.-1A	J	1	.-1A	J
-Chromosome2	9140783	C	1	,	J	1	t	J	0	*	*	0	*	*	2	,t	JJ
-Chromosome2	9175316	C	3	.AA	F::	1	.	F	0	*	*	0	*	*	1	A	:
-Chromosome2	9302554	T	6	.C.CC.	<F<FJJ	3	CCC	7FJ	2	.C	7J	2	.C	AJ	2	C.	JF
-Chromosome2	9320622	C	2	A.	JJ	0	*	*	2	A.	JJ	0	*	*	1	A	J
-Chromosome2	9320678	C	2	.-1G.	ss	0	*	*	1	.-1G	F	0	*	*	1	.-1G	s
-Chromosome2	9320769	G	2	,a	JJ	0	*	*	2	c,	7J	0	*	*	1	,	J
-Chromosome2	9354618	A	0	*	*	0	*	*	2	G.	sk	1	.	`	1	G	s
-Chromosome2	9354633	A	0	*	*	0	*	*	2	G.	fs	1	.	e	1	G	s
-Chromosome2	9354658	A	0	*	*	0	*	*	2	.g	oJ	1	.	o	1	G	`
-Chromosome2	9354671	G	0	*	*	0	*	*	2	,a	JJ	1	,	J	1	a	J
-Chromosome2	9399828	G	1	.	J	0	*	*	0	*	*	2	.T	FJ	1	T	J
-Chromosome2	9399845	C	1	.	J	0	*	*	0	*	*	2	.G	sJ	1	G	J
-Chromosome2	9399847	T	1	.	J	0	*	*	0	*	*	2	.G	sJ	1	G	J
-Chromosome2	9399859	C	1	.	J	0	*	*	0	*	*	2	.G	`J	1	G	J
-Chromosome2	9399860	G	1	.	J	0	*	*	0	*	*	2	.A	sJ	1	A	J
-Chromosome2	9399868	G	1	.	J	0	*	*	0	*	*	2	.C	sJ	1	C	J
-Chromosome2	9399879	A	1	.	J	0	*	*	0	*	*	2	.G	`J	1	G	J
-Chromosome2	9399883	T	1	.	J	0	*	*	0	*	*	2	.C	\J	1	C	J
-Chromosome2	9399923	T	1	.	J	0	*	*	0	*	*	2	.C	VJ	1	C	J
-Chromosome2	9399925	G	1	.	J	0	*	*	0	*	*	2	.A	sJ	1	A	F
-Chromosome2	9399938	A	1	.	J	0	*	*	0	*	*	2	.G	oJ	1	G	A
-Chromosome2	9399959	C	1	.	J	0	*	*	0	*	*	2	.T	eJ	1	T	A
-Chromosome2	9458208	C	1	g	J	0	*	*	2	,g	JJ	0	*	*	1	,	A
-Chromosome2	9458345	C	1	t	F	0	*	*	2	,t	JH	0	*	*	2	,,	JJ
-Chromosome2	9534990	A	0	*	*	1	,$	A	2	,-1t,-1t	JJ	2	,-1t,-1t	FJ	0	*	*
-Chromosome2	9631371	A	1	C	J	1	G	F	0	*	*	2	C,	Jf	0	*	*
-Chromosome2	9701983	A	2	,,	JA	0	*	*	0	*	*	1	g	F	2	,g	J7
-Chromosome2	9812626	G	1	.-1A	J	1	.	J	0	*	*	0	*	*	1	.-1A	J
-Chromosome2	9870816	T	1	,	A	1	a	J	0	*	*	3	a,a	JJJ	4	a,aa	JAJJ
-Chromosome2	9903437	G	0	*	*	0	*	*	1	.	J	2	.T	JJ	1	T	F
-Chromosome2	9903467	T	0	*	*	0	*	*	1	.	J	2	.C	FJ	1	C	J
-Chromosome2	9903661	T	0	*	*	0	*	*	1	,	J	2	c,	JJ	1	c	J
-Chromosome2	9903694	G	0	*	*	0	*	*	1	,	J	2	c,+6atactc	FA	1	c	J
-Chromosome2	9951217	C	1	.-4ATAA	J	0	*	*	1	.-4ATAA	J	1	,	s	0	*	*
-Chromosome2	9968732	T	0	*	*	2	GG	ss	2	.G	kJ	2	G.	JJ	0	*	*
-Chromosome2	9968775	G	0	*	*	2	AA	ss	1	,	J	2	.a	sJ	0	*	*
-Chromosome2	9968795	G	0	*	*	2	CC	ss	1	,	J	2	.c	sJ	0	*	*
-Chromosome2	9968796	C	0	*	*	2	TT	ss	1	,	J	2	.t	sJ	0	*	*
-Chromosome2	9968808	T	0	*	*	2	..	ss	1	g	J	2	G,	sJ	0	*	*
-Chromosome2	10089696	G	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,	F
-Chromosome2	10410432	C	1	.-2AA	J	1	.-2AA	J	0	*	*	1	.-2AA	J	0	*	*
-Chromosome2	10410777	T	1	,	J	1	,-1a	J	0	*	*	1	,-1a	F	0	*	*
-Chromosome2	10467029	G	3	A,,	JJJ	1	,	J	0	*	*	0	*	*	1	A	J
-Chromosome2	10503339	G	0	*	*	1	A	o	0	*	*	2	..	ss	2	.A	ss
-Chromosome2	10503360	C	0	*	*	1	T	s	0	*	*	2	..	os	2	.T	ss
-Chromosome2	10503403	A	0	*	*	1	G	s	0	*	*	2	..	sj	2	.G	so
-Chromosome2	10503410	G	0	*	*	1	A	s	0	*	*	2	..	oj	2	.A	ss
-Chromosome2	10503431	C	0	*	*	1	t	J	0	*	*	2	,,	JJ	2	,t	JJ
-Chromosome2	10503444	G	0	*	*	1	,	J	0	*	*	2	a,	JJ	2	a,	JJ
-Chromosome2	10629881	T	0	*	*	0	*	*	1	.-1A	J	2	.-1A.-1A	AJ	1	.-1A	J
-Chromosome2	10665763	C	0	*	*	1	,	J	2	g,	JJ	0	*	*	1	g	J
-Chromosome2	11175052	T	1	c	F	2	c,	FJ	0	*	*	3	,c,	JJJ	2	,,	7J
-Chromosome2	11201615	G	2	.A	JA	0	*	*	0	*	*	1	.	J	1	A	J
-Chromosome2	11202408	G	1	A	J	0	*	*	0	*	*	2	..	Fs	2	.A	7J
-Chromosome2	11202684	C	1	t	J	0	*	*	0	*	*	1	,	A	2	t,	<J
-Chromosome2	11202705	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	F<
-Chromosome2	11202711	G	1	a	J	0	*	*	0	*	*	1	,	A	2	a,	FJ
-Chromosome2	11202726	A	1	g	J	0	*	*	0	*	*	1	,	<	2	g,	JF
-Chromosome2	11202732	G	1	a	J	0	*	*	0	*	*	1	,	J	2	a,	JJ
-Chromosome2	11202750	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	JJ
-Chromosome2	11202752	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	AJ
-Chromosome2	11217961	C	1	,	J	1	T	s	2	T,	aJ	0	*	*	0	*	*
-Chromosome2	11217977	T	1	,	6	1	G	s	2	G,	fH	0	*	*	0	*	*
-Chromosome2	11356770	T	1	c	A	1	.	s	0	*	*	0	*	*	2	,c	JF
-Chromosome2	11356793	A	1	c	F	1	.	s	0	*	*	0	*	*	2	,c	JJ
-Chromosome2	11356794	G	1	c	J	1	.	s	0	*	*	0	*	*	2	,c	JF
-Chromosome2	11356821	T	1	c	J	1	.	s	0	*	*	0	*	*	2	,c	JJ
-Chromosome2	11356825	G	1	a	J	1	.	s	0	*	*	0	*	*	2	,a	JJ
-Chromosome2	11385042	A	0	*	*	2	ct	7J	2	tc	JF	0	*	*	2	tc	FF
-Chromosome2	11385147	A	0	*	*	2	,,	JJ	2	g,	JJ	0	*	*	2	g,	JJ
-Chromosome2	11405787	C	0	*	*	2	t,	JJ	1	,	J	2	,t	JJ	0	*	*
-Chromosome2	11409191	G	0	*	*	2	T.	JJ	2	T.	FJ	1	A	J	1	T	J
-Chromosome2	11409344	G	0	*	*	2	at	<J	2	a,	JJ	1	,	J	1	a	J
-Chromosome2	11606040	G	17	..............A..	JJJJJJJJJJAJJJJJJ	11	.....A.....	JFFFJJJJFJJ	17	.....A...........	JJJA<JJJJJJJFJJJJ	3	...	JJJ	11	......A.A..	JJJJJJJA<JJ
-Chromosome2	11834959	C	2	G.	JJ	2	GG	JJ	0	*	*	2	.G	JF	0	*	*
-Chromosome2	11834973	G	1	.-4ACGT	7	2	.-4ACGT.-4ACGT	::	0	*	*	2	..-4ACGT	J:	0	*	*
-Chromosome2	11835031	A	2	G.	JJ	2	GG	JJ	0	*	*	2	.G	JF	0	*	*
-Chromosome2	11835041	G	2	A.	JJ	1	A	J	0	*	*	1	.	J	0	*	*
-Chromosome2	12014080	A	2	c,	AJ	0	*	*	1	,	F	0	*	*	1	c	J
-Chromosome2	12077427	C	0	*	*	1	,	J	2	a,	JJ	0	*	*	1	t	J
-Chromosome2	12083384	A	0	*	*	0	*	*	1	^I.	8	2	G.	JJ	1	G	J
-Chromosome2	12083965	A	1	G	J	0	*	*	0	*	*	1	.	J	2	G.	JJ
-Chromosome2	12083977	T	1	C	J	0	*	*	0	*	*	1	.	J	2	C.	FJ
-Chromosome2	12112193	G	2	.A	<J	1	A	J	1	.	J	0	*	*	0	*	*
-Chromosome2	12112209	G	2	.A	FJ	1	.	J	1	A	J	0	*	*	0	*	*
-Chromosome2	12112501	T	2	,c	JJ	1	c	J	1	,	J	0	*	*	0	*	*
-Chromosome2	12159712	T	1	.-1C	J	0	*	*	1	.	J	0	*	*	1	.-1C	J
-Chromosome2	12323192	G	0	*	*	1	T	J	2	..	JJ	0	*	*	2	T.	JJ
-Chromosome2	12323196	G	0	*	*	1	.	J	2	A.	JJ	0	*	*	2	.A	JJ
-Chromosome2	12323270	C	0	*	*	1	.	s	2	G.	js	0	*	*	2	.G	se
-Chromosome2	12323313	C	0	*	*	1	.	s	2	T.	fs	0	*	*	2	.T	sj
-Chromosome2	12323335	C	0	*	*	1	,	J	2	tt	FJ	0	*	*	2	,t	JJ
-Chromosome2	12838841	C	0	*	*	1	.	J	1	.-1A	J	1	.-1A	J	0	*	*
-Chromosome2	12871162	G	0	*	*	1	.	J	1	T	J	2	.T	AJ	0	*	*
-Chromosome2	12871174	C	0	*	*	1	.	J	1	T	J	2	.T	JJ	0	*	*
-Chromosome2	12871194	G	0	*	*	1	.	J	1	A	J	2	.A	JJ	0	*	*
-Chromosome2	12871216	G	0	*	*	1	T	F	1	A	J	2	TA	JJ	0	*	*
-Chromosome2	12872168	C	0	*	*	0	*	*	1	.-6GCACAG	9	1	.	J	2	..-6GCACAG	J9
-Chromosome2	12872186	G	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	J<
-Chromosome2	12872402	C	0	*	*	0	*	*	1	t	J	1	,	J	2	t,	AF
-Chromosome2	12872403	T	0	*	*	0	*	*	1	c	J	1	,	J	2	c,	J<
-Chromosome2	12872431	C	0	*	*	0	*	*	1	g	J	1	,	F	2	g,	JA
-Chromosome2	12872435	A	0	*	*	0	*	*	1	t	F	1	,	<	2	t,	J<
-Chromosome2	12872436	T	0	*	*	0	*	*	1	a	J	1	,	<	2	a,	FA
-Chromosome2	12872447	A	0	*	*	0	*	*	1	g	J	1	,	<	2	g,	FF
-Chromosome2	12872475	T	0	*	*	0	*	*	1	,-9gcatacgcg	8	1	,	F	2	,-9gcatacgcg,	8F
-Chromosome2	12877695	A	1	,	7	2	,g	F7	0	*	*	0	*	*	1	t	J
-Chromosome2	12896292	C	0	*	*	0	*	*	3	.GG	JJJ	1	G	7	1	.	J
-Chromosome2	12896330	G	0	*	*	0	*	*	3	C..	jJs	1	.	F	1	C	F
-Chromosome2	12896355	G	0	*	*	0	*	*	3	.-4TGGT..	Oos	1	.	k	1	.-4TGGT	8
-Chromosome2	12896404	A	0	*	*	0	*	*	3	..g	ssJ	1	.	f	1	G$	J
-Chromosome2	12896417	G	0	*	*	0	*	*	3	CC,	JJJ	1	C	K	1	,	J
-Chromosome2	12896431	C	0	*	*	0	*	*	3	,tt	JJJ	1	t	J	1	,	J
-Chromosome2	12902590	G	0	*	*	2	.C	J<	2	CC	FJ	0	*	*	1	.	J
-Chromosome2	12919106	T	0	*	*	1	.-1C	E	2	..-1C	FE	0	*	*	1	.	F
-Chromosome2	12919107	C	0	*	*	1	*	A	2	T*	FA	0	*	*	1	.	F
-Chromosome2	12929725	T	1	c	J	1	.	F	0	*	*	2	.C	JJ	0	*	*
-Chromosome2	12936907	G	0	*	*	1	.	s	2	c.	Js	0	*	*	1	c	J
-Chromosome2	12936926	T	0	*	*	1	C	s	2	,C	Jo	0	*	*	1	,	J
-Chromosome2	13090699	T	0	*	*	1	,-4aaag	J	0	*	*	1	,-4aaag	A	1	,	J
-Chromosome2	13162011	C	0	*	*	5	.....	JJJJF	14	.........T....	JJJJJJJJJJJJJJ	10	......T...	JJJJJJJJJJ	14	...T.....T....	JJJJJJAJJJJJJJ
-Chromosome2	13162088	G	0	*	*	5	.....	sssss	15	A...........A.,	@sosssjcssjsoss	14	...A........A.	ojsVssssjsssRs	15	....A..........	sssssssssseosss
-Chromosome2	13162094	T	0	*	*	5	.....	oVaso	15	.....G........,	MsooksRkososssj	14	.......G......	o`sHee`sesosWo	15	.G........G....	osoos``ejs`sVso
-Chromosome2	13162101	G	0	*	*	5	.....	sooss	15	.....T........,	osss=sfjssesoso	14	.......T......	sksjsssoksjses	15	.T........T....	sssssojssoaoojs
-Chromosome2	13347462	T	1	G	J	2	G.	JJ	1	.	F	0	*	*	0	*	*
-Chromosome2	13566780	G	2	C.	JJ	0	*	*	3	..C	J<7	1	C	<	2	..	JJ
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-Chromosome2	13590258	T	6	AA.G.A	JJJJJJ	3	..A	AJJ	0	*	*	1	G	J	6	.A....	JJJJJF
-Chromosome2	13590344	A	6	..GGG.	JJJFJJ	3	GG.	J<J	0	*	*	1	G	J	6	G.GGG.	JFJJJJ
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-Chromosome2	13683388	C	0	*	*	2	T,	sJ	1	t	J	3	,t.	AJs	1	,	J
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-Chromosome2	13723170	C	0	*	*	0	*	*	2	..	JF	2	.T	FJ	4	TT..	JFJJ
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-Chromosome2	13723324	G	0	*	*	0	*	*	2	,,	JJ	3	,,A	JJs	3	,,a	JJF
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-Chromosome2	13795127	A	2	..	FF	0	*	*	1	G	s	0	*	*	2	.G	JJ
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-Chromosome2	36680433	A	1	.-20TATATACTTCCGTACGGTAG	9	1	.-20TATATACTTCCGTACGGTAG	9	0	*	*	0	*	*	1	.-20TATATACTTCCGTACGGTAG	:
-Chromosome2	36686504	C	1	t	J	0	*	*	0	*	*	3	..t	se7	1	,	J
-Chromosome2	36764101	T	0	*	*	1	.	s	5	.C.C.	Josss	2	C.	ss	0	*	*
-Chromosome2	36764127	C	0	*	*	1	,	J	4	T,,t	sJJJ	2	t,	7J	0	*	*
-Chromosome2	36882933	A	0	*	*	1	,	<	3	c,,	A<A	0	*	*	3	,c,	JJF
-Chromosome2	36984614	G	1	,	J	1	.-1T	s	1	.-2TT	F	1	.-2TT	`	1	,-1t	e
-Chromosome2	37125102	A	1	G	J	0	*	*	2	.G	JJ	1	.	J	0	*	*
-Chromosome2	37151425	C	0	*	*	0	*	*	1	,-1t	J	1	,	J	1	,-1t	J
-Chromosome2	37257493	G	3	,,,	JJJ	0	*	*	1	,-1t	J	1	,-1t	J	0	*	*
-Chromosome2	37537449	G	0	*	*	1	A	o	2	A.	ss	0	*	*	1	.	s
-Chromosome2	37656405	G	1	T	J	0	*	*	1	.	J	2	T.	FJ	2	aT	`J
-Chromosome2	37656428	A	1	.	J	0	*	*	1	G	J	2	.G	JJ	2	g.	`J
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-Chromosome2	37656522	G	1	a	F	0	*	*	1	.	o	2	.a	oJ	0	*	*
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-Chromosome2	37932438	C	0	*	*	1	.	o	4	..TT	ssVs	0	*	*	2	.T	ss
-Chromosome2	37932560	G	0	*	*	1	,	J	4	,t,,	JJJJ	0	*	*	2	,a	JJ
-Chromosome2	37974916	G	0	*	*	1	.	s	1	A	o	0	*	*	2	A.+3TGA	o5
-Chromosome2	38002990	T	0	*	*	1	.+2AC	J	0	*	*	2	.+2AC.+2AC	JH	2	.+2AC.+2AC	JJ
-Chromosome2	38375059	T	2	,,-1c	JF	1	,-1c	J	1	,-1c	J	0	*	*	1	,	J
-Chromosome2	38434734	A	1	,	J	1	g	J	4	g,gg	<JJJ	0	*	*	2	,t	JJ
-Chromosome2	38446558	T	2	C.	JA	1	.	J	0	*	*	0	*	*	2	.C	AJ
-Chromosome2	38446571	T	2	.-2TC.-2TC	88	1	.-2TC	8	2	.-2TC.-2TC	88	0	*	*	2	..-2TC	J7
-Chromosome2	38446587	C	1	.-1T	J	1	.-1T	J	2	.-1T.-1T	<J	0	*	*	1	.-1T	?
-Chromosome2	38555674	G	2	A.	J<	0	*	*	0	*	*	1	A	A	1	.	J
-Chromosome2	38618406	G	0	*	*	0	*	*	1	T	`	3	,,,	JJF	3	T,,	sFJ
-Chromosome2	38618427	A	0	*	*	0	*	*	1	,	J	3	ttt	JJF	3	,tt	J<F
-Chromosome2	38618437	G	0	*	*	0	*	*	1	,	J	3	ccc	JJJ	3	,cc	JFJ
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-Chromosome2	38831802	T	1	C	J	0	*	*	1	.	<	0	*	*	4	C..C	JJJJ
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-Chromosome2	55801046	A	0	*	*	0	*	*	1	.	J	2	.C	AJ	2	.C	JJ
-Chromosome2	55801067	C	0	*	*	0	*	*	1	.	s	2	.A	oJ	2	..-2TA	sa
-Chromosome2	55801072	C	0	*	*	0	*	*	1	.	s	2	.T	sJ	1	T	s
-Chromosome2	55801076	T	0	*	*	0	*	*	1	.	s	2	.C	s]	2	.C	se
-Chromosome2	55801135	A	0	*	*	0	*	*	1	.	s	2	.G	os	2	.G	ss
-Chromosome2	55881879	C	2	,t	JJ	0	*	*	1	t	J	0	*	*	2	,,	FJ
-Chromosome2	55881883	A	2	,t	JJ	0	*	*	1	t	J	0	*	*	1	,	J
-Chromosome2	56008596	T	2	CA	<J	3	CAC	FJJ	0	*	*	0	*	*	1	C	J
-Chromosome2	56008621	A	2	.G	sA	2	.G	sJ	0	*	*	1	.	a	2	.g	<J
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-Chromosome2	56010525	C	0	*	*	3	a,,	JJJ	1	t	J	0	*	*	1	,	J
-Chromosome2	56013038	G	1	.	\	0	*	*	0	*	*	3	,Aa	JoF	1	a	7
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-Chromosome2	56013048	A	1	G	f	0	*	*	0	*	*	2	,T	Js	1	t	J
-Chromosome2	56014054	C	0	*	*	0	*	*	1	.	J	2	t,	JJ	1	t	A
-Chromosome2	56014113	G	0	*	*	0	*	*	1	.-1A	J	1	,-1a	<	1	,	J
-Chromosome2	56014174	C	1	a	J	0	*	*	0	*	*	2	a,	JA	2	,a	JJ
-Chromosome2	56014727	C	1	.	J	2	.T	Js	0	*	*	3	TT.	JJJ	1	T	J
-Chromosome2	56014732	A	1	.	J	2	.G	Js	0	*	*	3	GG.	JJJ	1	G	J
-Chromosome2	56014735	C	1	.	F	2	.T	Js	0	*	*	3	TT.	JJJ	1	T	F
-Chromosome2	56014747	G	1	.	J	2	.T	Js	0	*	*	3	TT.	JJJ	1	T	J
-Chromosome2	56014759	T	1	.	J	2	.C	Js	0	*	*	3	CC.	JJJ	1	C	F
-Chromosome2	56014775	T	1	.	J	2	.A	Js	0	*	*	3	AA.	JJA	1	A	J
-Chromosome2	56014788	C	1	.	J	2	.G	Js	0	*	*	3	GG.	JJ<	1	G	J
-Chromosome2	56014790	C	1	.	F	2	.T	Js	0	*	*	2	T.	JJ	1	T	J
-Chromosome2	56014794	A	1	.	F	2	.G	Fs	0	*	*	3	GG.	JJA	1	G	J
-Chromosome2	56014821	A	1	.	J	2	.G	Js	0	*	*	3	GG.	JsF	1	G	J
-Chromosome2	56015017	C	0	*	*	2	,A	JJ	1	A	J	2	.,	FJ	0	*	*
-Chromosome2	56015038	T	0	*	*	2	,G	Js	1	G	s	1	.	j	0	*	*
-Chromosome2	56027747	C	1	.-1T	J	1	.+1T	>	1	,-1t	J	0	*	*	0	*	*
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-Chromosome2	56193843	C	1	,-8tccgaact	7	1	,-8tccgaact	7	1	,-8tccgaact	7	0	*	*	0	*	*
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-Chromosome2	56388686	T	0	*	*	1	,	J	0	*	*	2	c,	JF	2	,c	JJ
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-Chromosome2	56424797	C	1	a	J	0	*	*	0	*	*	3	a,,	7JJ	1	.	s
-Chromosome2	56514340	C	6	..TT.T	FJJJJJ	6	.....T	JJJJJF	10	.T.TT.....	JJJ<JJJJJJ	7	.T.....	JJJJJJJ	9	TTTT.....	JFJJJJJFJ
-Chromosome2	56514364	C	6	...G.G	JJFJJJ	6	...GG.	JJJJF7	10	..........	JJJJJJJJJJ	7	.....T.	JJJJJFJ	9	GG.......	JJFJJJJ<J
-Chromosome2	56690544	C	1	.	J	1	.-3CGG	<	0	*	*	0	*	*	1	,-3cgg	:
-Chromosome2	56826836	A	0	*	*	1	,-4gcat	;	0	*	*	1	,-4gcat	;	1	,-4gcat	;
-Chromosome2	56936052	C	3	..T	JJ7	0	*	*	1	,	o	0	*	*	1	T	7
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-Chromosome2	56936073	T	3	..C	JJJ	0	*	*	1	,	j	0	*	*	1	C	J
-Chromosome2	56936145	G	3	..A	FJJ	0	*	*	1	,	e	0	*	*	1	A	D
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-Chromosome2	57039351	C	2	,t	AA	2	,t	JJ	2	tt	JJ	1	.	s	2	t,	JJ
-Chromosome2	57131491	G	2	,t	JJ	1	t	J	3	,,a	FJJ	3	,,a	JJJ	1	,	F
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-Chromosome2	57301771	C	3	..A	sFJ	0	*	*	0	*	*	1	A	J	1	.	J
-Chromosome2	57301947	T	2	C.	JJ	0	*	*	0	*	*	1	c	J	1	.	J
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-Chromosome2	120182389	C	1	T	s	2	..	ks	0	*	*	2	T.	ss	0	*	*
-Chromosome2	120182422	C	1	A	o	2	..	js	0	*	*	2	A.	ss	0	*	*
-Chromosome2	120182453	C	1	t	J	2	,,	JF	0	*	*	2	t,	JJ	0	*	*
-Chromosome2	120215239	T	0	*	*	0	*	*	2	.C	FJ	1	.	F	1	C	J
-Chromosome2	120215508	G	0	*	*	0	*	*	2	,t	FJ	1	,	F	1	t	J
-Chromosome2	120215512	T	0	*	*	0	*	*	2	,a	JF	1	,	J	1	a	A
-Chromosome2	120437910	T	1	.	s	1	.-1G	s	0	*	*	1	,-1g	`	0	*	*
-Chromosome2	120441471	C	0	*	*	2	T.	so	0	*	*	1	.	s	3	.T.	sss
-Chromosome2	120441490	C	0	*	*	2	..	ss	0	*	*	1	A	s	3	A..	sos
-Chromosome2	120471646	C	2	,t	JJ	0	*	*	2	tt	FA	0	*	*	1	,	7
-Chromosome2	120614194	G	1	c	J	0	*	*	0	*	*	3	CC,	ssF	1	,	J
-Chromosome2	120681202	T	0	*	*	4	.,-4aggg,-4aggg,	OGG5	0	*	*	2	,,-4aggg	JA	2	,-4aggg,-4aggg	FG
-Chromosome2	120681203	A	1	*	F	4	.**g	`GG5	0	*	*	3	,**	JG@	3	,**	JGG
-Chromosome2	120681204	G	1	*	F	4	.**,	jGG5	0	*	*	3	,**	AG@	3	,**	JGG
-Chromosome2	120681205	G	1	*	F	4	.**,	oGG5	0	*	*	3	,**	FG@	3	,**	JGG
-Chromosome2	120681206	G	1	*	F	4	.**,	sGG5	0	*	*	3	,**	JG@	3	,**	JGG
-Chromosome2	120723600	G	1	.-1C	J	0	*	*	0	*	*	1	.-1C	J	1	.	J
-Chromosome2	120798224	C	3	,,,	JJJ	4	..,t	ssJJ	3	,tt	JJJ	2	t,	JJ	3	,t,	<<J
-Chromosome2	120798275	C	3	,t,	JJJ	4	tt,,	JFJJ	3	,,,	JJJ	2	,t	JJ	2	,t	FJ
-Chromosome2	120804694	T	3	CC.	JJJ	1	C	J	0	*	*	2	..	JJ	0	*	*
-Chromosome2	120804696	T	3	..C	JJJ	1	.	J	0	*	*	2	.C	JJ	0	*	*
-Chromosome2	120804710	A	3	..G	JJJ	1	.	J	0	*	*	3	.G.	sss	0	*	*
-Chromosome2	120804716	C	3	TT.	FJJ	1	T	J	0	*	*	3	...	ses	0	*	*
-Chromosome2	120804722	A	3	CC.	JFJ	1	C	J	0	*	*	3	...	sss	0	*	*
-Chromosome2	120804730	T	2	A.	JJ	1	A	J	0	*	*	3	...	sss	0	*	*
-Chromosome2	120854045	A	3	,gg	JJJ	2	,g	JA	0	*	*	1	g	A	0	*	*
-Chromosome2	121044473	G	1	.	J	0	*	*	2	T.	JF	0	*	*	1	T	9
-Chromosome2	121044859	G	0	*	*	1	a	J	2	,a	JJ	2	A.	so	0	*	*
-Chromosome2	121300837	G	1	.	J	2	AA	JJ	0	*	*	0	*	*	2	.A	JF
-Chromosome2	121300861	G	1	.	J	2	AA	JJ	0	*	*	0	*	*	2	.A	JJ
-Chromosome2	121300884	T	1	.	J	2	CC	JJ	0	*	*	0	*	*	2	.C	JJ
-Chromosome2	121300931	A	1	.	`	2	CC	os	0	*	*	0	*	*	2	.C	sV
-Chromosome2	121300975	A	1	,	A	2	gg	JJ	0	*	*	0	*	*	2	,g	JJ
-Chromosome2	121301041	G	1	,	J	2	aa	JJ	0	*	*	0	*	*	2	,a	JJ
-Chromosome2	121318641	G	0	*	*	2	..	FF	3	..A	JJJ	0	*	*	1	T	J
-Chromosome2	121318711	A	0	*	*	3	...	JeJ	5	.GGG.	FJJFJ	4	...G	JssJ	0	*	*
-Chromosome2	121318938	C	2	t,	JJ	3	*t,	JJJ	5	,,t,,	<JJJJ	3	,,,	JJJ	3	t,,	JJJ
-Chromosome2	121363528	G	0	*	*	0	*	*	2	A.	s\	1	A	s	1	.	s
-Chromosome2	121407164	A	1	.	J	2	.G	Js	0	*	*	0	*	*	1	T	J
-Chromosome2	121407208	C	1	T	J	2	T,	JJ	0	*	*	0	*	*	1	.	A
-Chromosome2	121407235	C	1	T	J	2	T,	J9	0	*	*	0	*	*	1	.	A
-Chromosome2	121460758	T	1	.	J	1	C	J	0	*	*	0	*	*	2	C.	7J
-Chromosome2	121529325	G	0	*	*	4	....	JFJF	0	*	*	1	A	J	3	.-1A..	JJ7
-Chromosome2	121738702	A	0	*	*	1	.-4GTAC	:	1	.-4GTAC	:	1	.	s	0	*	*
-Chromosome2	121738796	C	0	*	*	1	.	s	1	T	j	2	t,	JF	0	*	*
-Chromosome2	121861797	C	1	.	A	0	*	*	3	T..	JJA	0	*	*	2	T.	JJ
-Chromosome2	121862395	C	2	.T	FJ	0	*	*	0	*	*	1	.	A	2	T.	JA
-Chromosome2	121862431	C	3	.TT	<FJ	0	*	*	0	*	*	1	.	J	1	T	A
-Chromosome2	121862447	T	3	.CC	FJA	0	*	*	0	*	*	1	.	<	3	C..	J<J
-Chromosome2	121862518	G	3	..C	7AJ	0	*	*	0	*	*	1	.	F	3	C..	JFs
-Chromosome2	121862690	G	3	,,a	FJJ	0	*	*	0	*	*	1	,	A	2	a,	JF
-Chromosome2	121862714	G	3	t,,	<JJ	0	*	*	0	*	*	1	t	F	2	,,	JJ
-Chromosome2	121862729	G	3	,,t	<FJ	0	*	*	0	*	*	1	,	A	2	t,	JA
-Chromosome2	121863115	T	0	*	*	0	*	*	4	.CCC	JJJJ	1	C	J	3	C.C	FJJ
-Chromosome2	121863124	C	0	*	*	0	*	*	4	....	JJJF	1	T	s	3	..T	<JJ
-Chromosome2	121863186	G	1	.	J	0	*	*	2	.A	JF	1	A	s	2	.A	JJ
-Chromosome2	121863207	C	1	.	J	0	*	*	3	.GG	JJJ	1	G	s	2	.G	JJ
-Chromosome2	121909638	G	0	*	*	2	..	so	2	A.	Js	2	.A	ss	1	A	J
-Chromosome2	121909731	C	0	*	*	2	,t	JJ	1	a	J	1	,	J	0	*	*
-Chromosome2	121909732	C	0	*	*	2	t,	JJ	1	t	J	1	,	J	0	*	*
-Chromosome2	121983829	G	0	*	*	3	..A	FJJ	1	A	J	3	.A.	JGJ	0	*	*
-Chromosome2	121983851	A	0	*	*	3	..C	<JJ	1	C	J	3	.C.	JJJ	0	*	*
-Chromosome2	121983891	C	0	*	*	3	..T	VsJ	1	T	J	3	...	JJJ	0	*	*
-Chromosome2	121983892	T	0	*	*	3	..A	jsJ	1	A	J	3	...	JJJ	0	*	*
-Chromosome2	121983893	G	0	*	*	3	..A	jsJ	1	A	J	3	...	JJJ	0	*	*
-Chromosome2	121983909	G	0	*	*	3	..C	`ss	1	C	o	3	...	JJJ	0	*	*
-Chromosome2	121983940	C	0	*	*	3	...-15CATGATTTTACTGAA	ssS	1	.-15CATGATTTTACTGAA	S	3	...	sss	0	*	*
-Chromosome2	121983988	T	0	*	*	3	,,c	JJJ	1	c	J	3	,,,	JJJ	0	*	*
-Chromosome2	121984021	T	0	*	*	3	gg,	JJJ	1	,	J	3	g,g	JJJ	0	*	*
-Chromosome2	121984033	T	0	*	*	3	,,c	FFJ	1	c	J	3	,,,	JJJ	0	*	*
-Chromosome2	122037206	G	1	T	J	0	*	*	0	*	*	1	.	J	2	A.	JA
-Chromosome2	122037245	A	1	C	J	0	*	*	0	*	*	1	.	<	2	C.	FA
-Chromosome2	122037248	C	1	A	J	0	*	*	0	*	*	1	.	n	2	AT	JQ
-Chromosome2	122037249	G	1	C	J	0	*	*	0	*	*	1	.	s	2	C.	Jg
-Chromosome2	122037254	T	1	C	J	0	*	*	0	*	*	2	.,	sJ	2	C.	Jo
-Chromosome2	122037272	A	1	T	F	0	*	*	0	*	*	2	.,	sF	2	T.-1C	Vi
-Chromosome2	122037275	G	1	A	J	0	*	*	0	*	*	2	.,	jJ	2	A.	so
-Chromosome2	122037296	A	1	G	J	0	*	*	0	*	*	2	.,	oA	2	GT	`o
-Chromosome2	122037341	C	1	,+3caa	7	0	*	*	0	*	*	2	,+3caa,+3caa	::	2	,+3taa,+3caa	I5
-Chromosome2	122037351	A	1	c	J	0	*	*	0	*	*	2	,,	JJ	2	,c	JF
-Chromosome2	122037371	G	1	a	J	0	*	*	0	*	*	2	,,	JJ	2	,a	JJ
-Chromosome2	122037372	T	1	c	J	0	*	*	0	*	*	2	,,	JJ	2	,c	JJ
-Chromosome2	122087353	G	1	.	J	1	C	J	3	C.C	JJJ	0	*	*	0	*	*
-Chromosome2	122087383	A	1	.	J	1	G	J	3	G.G	JJJ	0	*	*	0	*	*
-Chromosome2	122178484	T	2	,c	JJ	2	aa	JJ	3	c,,	JJF	1	c	J	4	,c,,	JJJJ
-Chromosome2	122182924	T	1	C	J	1	.	k	0	*	*	1	.-3GGC	I	0	*	*
-Chromosome2	122183010	C	2	.A	oJ	3	.A.	sJm	1	T	J	2	..	os	0	*	*
-Chromosome2	122413998	C	1	A	7	1	.	7	0	*	*	3	..A	JJF	0	*	*
-Chromosome2	122574009	A	2	t,	JJ	1	,	J	0	*	*	0	*	*	2	.t	eJ
-Chromosome2	122809621	A	1	,	F	0	*	*	2	,g	JJ	1	g	A	0	*	*
-Chromosome2	122929093	A	2	C.	JJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome2	122929180	T	3	C.c	JJJ	1	C	J	0	*	*	0	*	*	1	.	7
-Chromosome2	122929283	G	2	a,	FJ	1	,	J	0	*	*	0	*	*	1	a	J
-Chromosome2	122929336	C	2	t,	JJ	1	t	J	0	*	*	0	*	*	1	,	J
-Chromosome2	122930736	G	4	.AA.	JJJJ	6	.AA.A.	JJFJJJ	8	.....A..	JFJFJJJF	2	..	JJ	6	...A..	JJJJsJ
-Chromosome2	122930886	A	4	,g,,	JFJJ	7	,,,g,,,	JJAJJJA	8	,,,,,g,,	JJJJAJJF	2	,,	FJ	5	,,,g,	JJJFJ
-Chromosome2	122930947	C	4	g,gg	JJJJ	6	gg,ggg	JJJJJF	8	gaggg,gg	FJJJ7JJA	2	gg	JJ	5	gg,,g	JJJJF
-Chromosome2	123034936	A	2	T.	FF	0	*	*	0	*	*	1	.	F	2	TT	JJ
-Chromosome2	123036715	G	2	.A	JF	0	*	*	1	T	J	0	*	*	3	...	FFF
-Chromosome2	123081812	A	0	*	*	2	G.	JJ	1	.	F	0	*	*	3	..G	7JJ
-Chromosome2	123081992	T	0	*	*	2	,g	JF	1	g	F	0	*	*	3	,,,	JJA
-Chromosome2	123082039	G	0	*	*	2	a,	JA	1	,	J	0	*	*	3	,,a	FJJ
-Chromosome2	123085231	A	0	*	*	0	*	*	2	,g	FJ	2	Gg	sF	1	,	F
-Chromosome2	123118294	T	1	,	J	0	*	*	1	,-6tcaata	5	2	,-6tcaata,-6tcaata	55	0	*	*
-Chromosome2	123385867	A	1	,	J	1	,-2gg	J	0	*	*	0	*	*	1	,-2gg	J
-Chromosome2	123650207	C	1	.-1A	J	0	*	*	1	.-1A	J	0	*	*	2	.-1A.-1A	JJ
-Chromosome2	123652643	T	2	.C	JJ	2	C.	JJ	1	.	J	0	*	*	0	*	*
-Chromosome2	123652657	A	2	T.	JJ	2	.T	Js	1	T	J	0	*	*	0	*	*
-Chromosome2	123775208	A	0	*	*	2	.G	JJ	1	.	J	0	*	*	5	G.G.G	JJJJJ
-Chromosome2	123775314	A	0	*	*	3	g,,	JJJ	1	,	J	0	*	*	5	,g,,,	JFJJJ
-Chromosome2	123784232	G	1	,	J	0	*	*	0	*	*	2	A.	ss	1	a	J
-Chromosome2	123801432	A	0	*	*	0	*	*	1	G	J	1	.	J	2	.G	AJ
-Chromosome2	123803311	T	0	*	*	0	*	*	3	..C	JJJ	1	.	J	2	.-1A.	AJ
-Chromosome2	123803323	G	0	*	*	0	*	*	3	.A.	FJJ	1	.	J	2	AC	FJ
-Chromosome2	123803368	A	0	*	*	0	*	*	3	GGG	AJs	1	.	J	2	G.	JJ
-Chromosome2	123835514	A	0	*	*	0	*	*	2	G.	os	2	G.	ss	1	G	s
-Chromosome2	123835547	G	0	*	*	0	*	*	3	A..	sss	2	A.	oj	1	.	s
-Chromosome2	123835583	C	0	*	*	0	*	*	2	,,	JJ	2	g,	JJ	1	T	s
-Chromosome2	123909645	G	0	*	*	1	.	J	2	A.	JA	0	*	*	1	A	J
-Chromosome2	123909714	C	0	*	*	1	G	s	2	.T	JA	0	*	*	1	.	J
-Chromosome2	123909723	G	0	*	*	1	A	s	2	..-1T	sF	0	*	*	1	.	s
-Chromosome2	123909789	C	0	*	*	1	*	J	2	,t	JJ	0	*	*	1	,	F
-Chromosome2	123911463	G	1	.	J	0	*	*	1	A	F	0	*	*	2	A.	FJ
-Chromosome2	123943841	A	1	.-1T	J	0	*	*	0	*	*	1	.-1T	o	1	.-1T	J
-Chromosome2	124020389	T	2	.C	AF	0	*	*	2	CC	ss	1	.	s	0	*	*
-Chromosome2	124020394	G	2	.C	J<	0	*	*	2	CC	ss	1	.	s	0	*	*
-Chromosome2	124020413	T	2	.C	<<	0	*	*	2	CC	ss	1	.	s	0	*	*
-Chromosome2	124020425	G	2	.A	JF	0	*	*	2	AA	ss	1	.	s	0	*	*
-Chromosome2	124020434	C	2	.G	AF	0	*	*	2	GG	ss	1	.	s	0	*	*
-Chromosome2	124020460	T	2	.C	7J	0	*	*	2	CC	ss	1	.	o	0	*	*
-Chromosome2	124219406	A	2	.G	JJ	0	*	*	1	G	J	0	*	*	1	.	F
-Chromosome2	124219560	C	2	,t	JJ	0	*	*	1	,	J	0	*	*	1	t	F
-Chromosome2	124219614	G	2	a,	JJ	0	*	*	1	a	F	0	*	*	1	,	J
-Chromosome2	124251413	A	1	.	F	1	C	7	2	c.	JA	0	*	*	0	*	*
-Chromosome2	124251415	G	1	C	F	1	.	7	2	,C	JA	0	*	*	0	*	*
-Chromosome2	124273425	A	0	*	*	1	.	F	2	,G	FJ	0	*	*	1	G	J
-Chromosome2	124273850	C	0	*	*	2	,T	JV	1	t	F	0	*	*	1	,	J
-Chromosome2	124361091	C	0	*	*	2	.A	JJ	1	.	J	1	*	D	0	*	*
-Chromosome2	124361144	T	0	*	*	2	.C	eo	1	.	J	1	C	V	0	*	*
-Chromosome2	124361155	C	0	*	*	2	.T	fo	1	.	J	1	T	H	0	*	*
-Chromosome2	124361194	A	0	*	*	2	.G	es	1	.	J	1	G	j	0	*	*
-Chromosome2	124484954	T	0	*	*	0	*	*	2	C.	JO	2	..	nn	1	C	J
-Chromosome2	124484970	T	0	*	*	0	*	*	2	C.	so	2	..	oo	1	C	o
-Chromosome2	124484986	A	0	*	*	0	*	*	2	..-1T	js	2	.G	sj	1	.	s
-Chromosome2	124485038	C	0	*	*	0	*	*	2	A.	ss	2	..	ss	1	A	s
-Chromosome2	124485095	T	0	*	*	0	*	*	2	,,-1a	JJ	2	,,	JJ	1	,-1a	J
-Chromosome2	124642794	A	0	*	*	1	G	7	1	.	s	2	g.	7s	0	*	*
-Chromosome2	124642829	A	0	*	*	1	C	s	1	.	s	2	c.	Fo	0	*	*
-Chromosome2	124642833	G	0	*	*	1	C	s	1	.	s	2	c.	JS	0	*	*
-Chromosome2	124660286	C	0	*	*	1	.	F	1	G	J	2	.G	`J	0	*	*
-Chromosome2	124702902	C	0	*	*	1	,	A	0	*	*	2	.A	sR	1	A	o
-Chromosome2	124702944	A	0	*	*	1	,	7	0	*	*	2	.G	sj	1	G	o
-Chromosome2	124791855	A	2	.+1C.+1C	AC	0	*	*	1	.+1C	A	2	.+1C.+1C	CC	0	*	*
-Chromosome2	124791866	T	2	.-1A.-1A	JA	1	.-1A	J	1	.-1A	J	2	..	JJ	0	*	*
-Chromosome2	124918637	G	0	*	*	1	,	J	4	,,t,	FJJJ	0	*	*	3	t,,	JJJ
-Chromosome2	124918640	C	0	*	*	1	t	J	4	,,,g	JJJJ	0	*	*	3	,t,	JJJ
-Chromosome2	124918655	C	0	*	*	1	t	J	4	,,,t	JJJJ	0	*	*	3	,t,	JJJ
-Chromosome2	124918656	C	0	*	*	1	t	J	4	,,,,	JJJJ	0	*	*	3	,t,	JJJ
-Chromosome2	124918662	C	0	*	*	1	g	J	4	,,,,	JJJJ	0	*	*	3	,g,	JJJ
-Chromosome2	124918663	C	0	*	*	1	g	J	4	,,,t	FJJJ	0	*	*	3	,gt	JJJ
-Chromosome2	124983546	C	2	..+4ATAT	J<	1	.-2AT	J	0	*	*	0	*	*	1	.-2AT	J
-Chromosome2	125011980	T	0	*	*	0	*	*	1	,-2aa	C	1	,-2aa	6	1	,	<
-Chromosome2	125029428	G	2	,t	JJ	0	*	*	1	t	J	1	.	s	0	*	*
-Chromosome2	125029494	C	2	,g	JJ	0	*	*	1	g	J	1	,	J	0	*	*
-Chromosome2	125029513	A	2	tc	JJ	0	*	*	1	c	J	1	,	F	0	*	*
-Chromosome2	125275650	A	0	*	*	2	g,	JJ	2	.g	sJ	0	*	*	1	,	J
-Chromosome2	125298596	C	0	*	*	0	*	*	2	.G	FJ	1	.	J	1	A	E
-Chromosome2	125462518	A	3	.G.	JFJ	0	*	*	0	*	*	1	.	J	1	C	F
-Chromosome2	125462561	G	2	.-2AA.-2AA	JJ	0	*	*	0	*	*	1	.-2AA	J	1	.-2AA	J
-Chromosome2	125463011	C	3	t,,	JFJ	0	*	*	0	*	*	1	,	J	1	t	F
-Chromosome2	125484610	G	0	*	*	0	*	*	1	.	J	2	A.	JF	1	A	J
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-Chromosome2	163908413	A	0	*	*	0	*	*	2	G.	EJ	1	G	E	2	..	JJ
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-Chromosome2	163908786	G	0	*	*	0	*	*	1	a	J	2	A,	sJ	2	,,	FJ
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-Chromosome2	163908850	A	0	*	*	0	*	*	1	c	J	2	,c	JJ	2	,,	JJ
-Chromosome2	163928766	C	2	,-1g,-1g	JJ	1	,-1g	<	1	,-1g	J	1	,-1g	J	1	,-1g	F
-Chromosome2	163938734	A	1	.-7TCAATTC	8	1	.	7	0	*	*	1	.-7TCAATTC	8	0	*	*
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-Chromosome2	164420102	G	2	,-4ttgc,-4ttgc	55	0	*	*	0	*	*	1	,-4ttgc	5	1	,-4ttgc	5
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-Chromosome2	164470267	A	2	,-9gtgtttagg,	7J	5	..,-9gtgtttagg,-9gtgtttagg,	sV77J	3	.,-9gtgtttagg,	s7J	5	,-9gtgtttagg,,,,	7JJJJ	7	..,-9gtgtttagg,,,,	oa7JJJJ
-Chromosome2	164495501	G	0	*	*	1	.	s	1	A	M	2	A.	os	0	*	*
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-Chromosome2	164936244	C	1	T	J	1	.	J	0	*	*	2	.A	JJ	0	*	*
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-Chromosome2	213628668	G	3	.T.	JJJ	8	......T.	oJsssJJJ	7	.......	FJJJFkJ	11	..T...T...,	JsVoJJJJJJs	4	T...	JsJJ
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-Chromosome2	213638831	C	2	,+4tata,+4tata	JJ	2	,+4tata,+4tata	JJ	7	,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata	JJJJJJ>	4	,-2ta,+4tata,+4tata,+4tata	JJJ<	10	,,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata	JJJHJFJJ<:
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-Chromosome2	223768078	C	1	.	<	0	*	*	2	A.	oJ	2	.A	`J	0	*	*
-Chromosome2	223768086	C	1	.	7	0	*	*	2	T.	oJ	2	.T	oA	0	*	*
-Chromosome2	223805618	A	3	G.G	sss	3	GGG	sss	10	..G....G..	ksssss`sss	8	G.G..GG.	sssRso`o	9	.GG...G.G	ssosesssj
-Chromosome2	223996769	G	7	.......	JJJFJJJ	0	*	*	0	*	*	1	A	5	2	T.	77
-Chromosome2	224110733	A	1	.-8CTCAAGGT	Q	0	*	*	0	*	*	1	.	e	1	,-8ctcaaggt	F
-Chromosome2	224112824	A	2	.C	JJ	0	*	*	1	C	J	0	*	*	2	.C	JJ
-Chromosome2	224112836	C	2	..	JJ	0	*	*	1	T	J	0	*	*	2	.A	AJ
-Chromosome2	224276594	A	0	*	*	1	,	F	0	*	*	1	,-1g	J	1	,-1g	J
-Chromosome2	224308837	G	2	t,	FJ	2	,t	JJ	2	,c	JJ	0	*	*	2	,,	AJ
-Chromosome2	224354928	A	0	*	*	1	.	k	1	g	J	2	g,	JA	0	*	*
-Chromosome2	224406656	T	0	*	*	0	*	*	4	C.,c	JjJH	1	,	7	2	,C	Fo
-Chromosome2	224406695	A	1	,	J	0	*	*	5	G,.,g	9JsJJ	0	*	*	2	,G	Js
-Chromosome2	224406709	G	1	,	A	0	*	*	4	,.,a	JsJJ	0	*	*	2	,A	Fs
-Chromosome2	224406716	A	1	,	J	0	*	*	3	.,t	sJJ	0	*	*	2	,T	Js
-Chromosome2	224406758	T	1	c	F	0	*	*	5	A,,,,	sJJ77	0	*	*	1	a	J
-Chromosome2	224409674	C	1	.	J	2	T.	sJ	0	*	*	1	A	J	0	*	*
-Chromosome2	224584146	C	1	.-1G	J	0	*	*	1	.-1G	o	1	,$	J	0	*	*
-Chromosome2	224623633	G	0	*	*	1	.	J	1	C	J	0	*	*	3	ACC	JJJ
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-Chromosome2	224629753	A	2	.G	JJ	2	G.	Js	0	*	*	1	.	s	0	*	*
-Chromosome2	224629773	A	2	.C	JJ	2	CG	Js	0	*	*	1	.	s	0	*	*
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-Chromosome2	224731330	G	0	*	*	1	.-1A	j	1	.-1A	j	1	.-1A	V	1	.	o
-Chromosome2	224853484	G	1	.-1A	J	1	A	;	3	.-1A.-1A.-1A	JJJ	1	.	J	0	*	*
-Chromosome2	225033332	C	0	*	*	1	.-3TTT	J	1	.-3TTT	s	1	.-2TT	J	0	*	*
-Chromosome2	225119283	A	2	gg	JF	1	,	J	0	*	*	0	*	*	6	,,g,g,	JJJJJJ
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-Chromosome2	225265371	G	1	.	J	0	*	*	1	.-3TGA	7	1	,-3tga	=	0	*	*
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-Chromosome2	225461903	T	0	*	*	2	,c	AJ	2	,c	AJ	0	*	*	1	,	A
-Chromosome2	225478326	T	3	,,-1a,-1a	JJJ	0	*	*	1	,-2aa	J	0	*	*	1	,-1a	J
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-Chromosome2	225665980	T	2	.G	AJ	1	G	J	0	*	*	0	*	*	1	.	7
-Chromosome2	225667093	C	2	G.	JJ	1	.	J	1	G	J	0	*	*	0	*	*
-Chromosome2	225781624	C	2	AA	AF	0	*	*	3	...	JJJ	1	T	J	3	T.T	JFA
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-Chromosome2	225910354	A	2	G.	JJ	1	.	J	0	*	*	0	*	*	2	.G	JJ
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-Chromosome2	226054314	G	1	.-1A	J	0	*	*	2	.-1A.-1A	JJ	0	*	*	1	.-1A	J
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-Chromosome2	226054507	A	1	t	J	0	*	*	2	t,	JJ	0	*	*	1	,	7
-Chromosome2	226054508	C	1	a	J	0	*	*	2	a,+4agta	JJ	0	*	*	1	,+4agta	F
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-Chromosome2	226217645	C	1	,+1t	F	3	.+1T,+1t,+1t	JJJ	0	*	*	3	.$.+1T,+1t	RJJ	4	.+1T.+1T,+1t.	JAJJ
-Chromosome2	226279624	A	34	.T........................G.......	JJJJJJJJJJJFFJJJJFJJAJJJJJJJJJJJJJ	12	...T........	JJJJJJJJJJAJ	24	..................T.....	JJJJJJJJJJJJJJJJJJJJJJJJ	20	..........T.........	JJJJJJJJJJJJJJJJJJFJ	39	.........G....T........................	JJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJF
-Chromosome2	226279823	G	34	,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,a,	JJJJJJJJJJFJJJ7FJJJJFJJJJJJJJJJJ77	12	,,,,,,a,,,,,	FJJJJJAJAJ<J	24	,,,,,,a,a,,,,,,,a,,,,,,,	JJJJJAFFJFJJJFJJJFJFJJJJ	21	,a,,,,,,a,,,,,,,a,,,,	J<JJJFJJJJJJJFJJJJJJJ	39	,,a,,,,,,,,a,,a,,a,,,,,,a,,,,,,,,,,,,a,	JJJJJJAJJJJ<JF7JJJJJJJJJFJJJJJJFJJJJJFJ
-Chromosome2	226279825	T	33	,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,	JFJFJJJJFF7FJJFJJJJJJJJJJJJJJJJFF	12	,,,,,,,,c,,c	JJJJJJJJJJFJ	24	,,,,,c,,,,,,,,,,,,,,,,,,	JJJFJAJFJJJJJJJJJJJJJJJF	20	,,,,c,,,,,,,,,,,,,,,	JFJJJJJJJJJJJJJJJJ7J	37	,,,,,,,c,,,,,,,,,,c,,,,,,,,,,,,,c,,,,	J<FJFJJJJAJFJJJJJJJJJJFJJJJJJJJJJJJJJ
-Chromosome2	226279873	A	34	,,,,,,,,,,,,,,c,c,,,,,c,,,,,,,,,,,	JJJAJJJJJJ<JAFAFJJJJFJJFJJJJJJJJF<	11	,,,,,,,,c,,	JJJJJJJJJFJ	24	c,c,,,,,,,,,,,,,,,,,,,,,	JJJJJJFJJJJJJJJJJJJFJJJF	21	,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJJJJJJJJJJJJJJ	39	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,	JJJJJJJJJJJFJJAJJJJJJJJJJFJJJJJJJJJJJJJ
-Chromosome2	226282284	A	3	...	FJJ	0	*	*	0	*	*	1	T	J	4	T..T	JFJJ
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-Chromosome2	226450632	A	2	.-5TTGTT.-5TTGTT	JJ	0	*	*	1	.-5TTGTT	J	0	*	*	2	..-5TTGTT	<J
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-Chromosome2	226910387	A	3	,gg	JJJ	0	*	*	2	g,	JJ	0	*	*	1	.	s
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-Chromosome2	250344794	T	0	*	*	1	,-1a	J	1	,-1a	J	1	,-1a	J	0	*	*
-Chromosome2	250579791	G	5	....A	JAJJJ	2	T.	JJ	2	..	J<	0	*	*	7	.....A.	JJFJJJJ
-Chromosome2	250579814	T	5	.....	J7JJJ	2	.A	J<	1	A	J	0	*	*	7	.....A.	JJJFJJJ
-Chromosome2	250579815	A	5	TGGGG	JAJFJ	2	G.	JJ	1	.	J	0	*	*	7	.GG.G.G	JJJJJJJ
-Chromosome2	250579932	G	1	a	<	1	,	F	0	*	*	0	*	*	4	,,.a	JJ7J
-Chromosome2	250579944	C	1	,	J	1	t	J	0	*	*	0	*	*	4	tt.t	JJJJ
-Chromosome2	250586436	C	0	*	*	0	*	*	1	a	J	2	a,	JJ	1	,	J
-Chromosome2	250589077	C	1	A	J	2	A.	J<	0	*	*	1	.	J	0	*	*
-Chromosome2	250589311	C	1	g	J	3	g,,	FFJ	0	*	*	1	,	J	0	*	*
-Chromosome2	250589341	G	1	,	J	3	,,a	JAF	0	*	*	1	a	J	0	*	*
-Chromosome2	250841153	C	4	,tt,	JJFJ	1	,	J	0	*	*	4	,,t,	JJJJ	3	t,t	JJJ
-Chromosome2	250965700	T	0	*	*	2	.$C$	gJ	4	C$.$.$.$	Jggc	4	.$.$C$.$	ggJg	2	.$C$	VJ
-Chromosome2	251089785	C	0	*	*	1	G	F	1	.-1G	J	1	.-1G	o	0	*	*
-Chromosome2	251115454	G	0	*	*	1	,	a	0	*	*	2	.A	JJ	1	A	<
-Chromosome2	251115482	G	0	*	*	1	a	s	0	*	*	2	.A	JF	1	.	7
-Chromosome2	251372351	T	0	*	*	1	.	J	1	.-1A	7	0	*	*	1	.-1A	J
-Chromosome2	251551402	T	1	c	J	1	.	s	0	*	*	2	.C	sJ	0	*	*
-Chromosome2	251605468	T	2	..	7J	0	*	*	2	.C	JF	0	*	*	1	C	J
-Chromosome2	251605494	C	2	..	7J	0	*	*	2	.G	J7	0	*	*	1	G	F
-Chromosome2	251605676	G	2	,,	7J	0	*	*	2	a,	J<	0	*	*	1	a	J
-Chromosome2	251612497	G	14	,tt,,tt,t,tt,,	J<JJJAJJJJJJJJ	1	t	J	12	t,ttt,tt,,,t	JJAJJFFJ7JJF	3	t,,	JFJ	8	t,t,,,,,	JFJ7FJJA
-Chromosome2	251612557	A	13	,g,,gg,g,gg,,	JJJAAJJJJJJJJ	1	g	J	13	g,ggg,,gg,,,g	FJJJJJ7JJAJJJ	3	g,,	J7J	8	,gg,,,,,	FJJ<JJJJ
-Chromosome2	252069976	G	2	T.	JJ	1	T	J	1	.	J	0	*	*	0	*	*
-Chromosome2	252069999	A	2	T.	<J	1	T	J	1	.	J	0	*	*	0	*	*
-Chromosome2	252080129	T	0	*	*	2	..	JJ	0	*	*	2	G.	J7	3	GGG	JFJ
-Chromosome2	252080227	G	0	*	*	2	AA	FF	0	*	*	2	..	JF	3	..A	JJJ
-Chromosome2	252080420	A	0	*	*	3	.gg	oJJ	0	*	*	1	g	J	3	,,,	JJJ
-Chromosome2	252080457	C	0	*	*	3	.tt	oJJ	0	*	*	2	,t	FJ	3	,,,	JJJ
-Chromosome2	252141805	A	0	*	*	1	,-6gggagg	6	1	,	J	0	*	*	1	,-6gggagg	6
-Chromosome2	252172916	C	1	.-1A	s	0	*	*	1	.-1A	s	1	.-1A	a	0	*	*
-Chromosome2	252241769	G	0	*	*	0	*	*	1	.	J	1	A	J	2	.C	BJ
-Chromosome2	252241802	A	0	*	*	0	*	*	1	G	J	1	.	J	2	.G	FJ
-Chromosome2	252380255	C	2	G,	VJ	0	*	*	1	g	J	0	*	*	1	,	J
-Chromosome2	252380310	G	2	A,	jJ	0	*	*	1	a	J	0	*	*	1	,	F
-Chromosome2	252440231	G	0	*	*	3	C..	oss	2	..	ss	0	*	*	1	C	s
-Chromosome2	252486136	A	2	.G	JJ	0	*	*	0	*	*	1	.	J	1	G	J
-Chromosome2	252486137	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	1	C	J
-Chromosome2	252486162	C	2	.T	JJ	0	*	*	0	*	*	1	.	J	1	T	J
-Chromosome2	252486163	C	2	.T	FJ	0	*	*	0	*	*	1	.	J	1	T	J
-Chromosome2	252486176	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	1	C	J
-Chromosome2	252486187	T	2	.G	JJ	0	*	*	0	*	*	1	.	J	1	G	J
-Chromosome2	252486424	G	2	t,	JJ	0	*	*	0	*	*	2	,,	JJ	1	t	J
-Chromosome2	252844176	C	2	,,	JJ	0	*	*	3	,t,	JJJ	0	*	*	3	t,,	FJJ
-Chromosome2	252871443	G	0	*	*	0	*	*	1	.	J	1	,-1t	J	1	.-1T	s
-Chromosome2	253165416	T	0	*	*	1	C	s	0	*	*	1	.	j	2	C.	ss
-Chromosome2	253229050	G	0	*	*	1	.	F	2	A.	JF	0	*	*	3	..A	JJ;
-Chromosome2	253229206	T	0	*	*	1	c	J	2	c,	JJ	0	*	*	3	,,,	JFJ
-Chromosome2	253485543	C	0	*	*	1	t	J	0	*	*	2	T.	sJ	1	.	J
-Chromosome2	253485551	G	0	*	*	1	a	J	0	*	*	2	.A	sJ	2	..	FJ
-Chromosome2	253485559	T	0	*	*	1	,	F	0	*	*	2	A.	oJ	1	C	J
-Chromosome2	253485563	A	0	*	*	1	g	J	0	*	*	2	G.	sJ	1	.	F
-Chromosome2	253485587	G	0	*	*	1	a	J	0	*	*	2	A.	sJ	1	.	F
-Chromosome2	253485619	A	0	*	*	1	c	J	0	*	*	2	T.	so	2	C,	JF
-Chromosome2	253485630	C	0	*	*	1	a	J	0	*	*	2	t.	Js	2	.,	sF
-Chromosome2	253485631	A	0	*	*	1	g	J	0	*	*	2	g.	Js	2	G,	oF
-Chromosome2	253485655	T	0	*	*	1	a	J	0	*	*	2	a.	:s	2	,a	JJ
-Chromosome2	253485667	G	0	*	*	1	t	J	0	*	*	1	.	e	2	,t	FJ
-Chromosome2	253587578	G	1	.	J	3	.A.	FJJ	0	*	*	2	.A	FJ	0	*	*
-Chromosome2	253587714	C	1	a	J	3	.$t,	iF7	0	*	*	2	,,	AJ	1	T	o
-Chromosome2	253641256	G	2	.A	JA	2	AA	JJ	0	*	*	0	*	*	2	A.	JJ
-Chromosome2	253641451	C	1	t	J	2	,,	JJ	0	*	*	0	*	*	2	,t	J<
-Chromosome2	253789872	C	2	G.	FJ	0	*	*	1	G	J	1	.	J	0	*	*
-Chromosome2	254090783	C	0	*	*	1	,	s	2	.+1A.	ss	0	*	*	2	.+2AA.	\j
-Chromosome2	254090803	G	0	*	*	1	t	s	2	T.	ss	0	*	*	2	.A	oA
-Chromosome2	254090820	A	0	*	*	1	,	s	2	.C	ss	0	*	*	2	CC	\s
-Chromosome2	254134402	G	1	.-2AA	;	0	*	*	1	.-1A	J	0	*	*	1	.-2AA	F
-Chromosome2	254137251	T	0	*	*	1	,-2aa	J	1	,-1a	J	1	,-1a	J	0	*	*
-Chromosome2	254155337	C	1	.-4CATG	<	1	,	F	1	.-4CATG	<	1	.-4CATG	W	0	*	*
-Chromosome2	254177680	G	0	*	*	8	A.A.AA..	oJJJJFJJ	2	AA	JJ	5	AAA..	JJJeJ	6	..AAAA	JJJJFJ
-Chromosome2	254177736	C	0	*	*	9	....A,...	ko_s=Jsos	2	..	s`	5	..T..	ooMej	6	....T.	oesoQs
-Chromosome2	254177820	T	0	*	*	8	,,c,cc,C	JJJJJJJs	2	,,	JJ	4	,,,c	JJJJ	6	c,,,,c	FJJJJJ
-Chromosome2	254497449	C	0	*	*	1	.-1A	s	1	.	o	1	.-1A	F	0	*	*
-Chromosome2	254713610	C	2	TA	FA	0	*	*	2	TT	JJ	0	*	*	1	.	J
-Chromosome2	254782078	T	0	*	*	2	.C	F<	0	*	*	1	C	J	1	.	J
-Chromosome2	254782378	G	0	*	*	2	a,	JJ	0	*	*	1	a	J	1	,	F
-Chromosome2	254782380	A	0	*	*	2	g,	JJ	0	*	*	1	g	J	1	,	J
-Chromosome2	254782384	T	0	*	*	2	,-1a,	JJ	0	*	*	1	,-1a	<	1	,	J
-Chromosome2	254785899	T	0	*	*	1	.	s	0	*	*	1	.-5GATAG	K	1	,-5gatag	6
-Chromosome2	254799316	G	3	,aa	JJJ	1	,	F	0	*	*	0	*	*	2	a,	JJ
-Chromosome2	254828297	T	0	*	*	0	*	*	1	.-1C	I	1	.-1C	I	1	.	J
-Chromosome2	255001220	C	0	*	*	0	*	*	1	.	J	2	.T	FJ	2	.T	JJ
-Chromosome2	255001230	A	0	*	*	0	*	*	1	.	J	2	.T	JJ	2	.T	JJ
-Chromosome2	255001244	G	0	*	*	0	*	*	1	.	J	1	T	J	2	.T	JJ
-Chromosome2	255001245	G	0	*	*	0	*	*	1	T	J	2	..	AJ	2	T.	JJ
-Chromosome2	255001300	A	0	*	*	0	*	*	1	T	J	2	T.	AJ	2	..	JJ
-Chromosome2	255001316	C	0	*	*	0	*	*	1	.	J	1	A	A	2	.A	JJ
-Chromosome2	255001340	G	0	*	*	0	*	*	1	.	s	2	AT	Rs	2	.T	ss
-Chromosome2	255001358	G	0	*	*	0	*	*	1	,	J	2	,a	<J	2	,a	JJ
-Chromosome2	255047485	C	0	*	*	1	.+1T	J	2	.-1T.-1T	CF	1	.-1T	J	0	*	*
-Chromosome2	255103797	C	0	*	*	1	.	A	2	.T	sJ	1	T	J	0	*	*
-Chromosome2	255125184	T	1	C	A	2	C.	JJ	0	*	*	0	*	*	2	.C	JA
-Chromosome2	255125486	A	2	.-1T.-1T	JJ	2	.-1T.-1T	JF	0	*	*	3	.-1T.-1T.-1T	JJJ	1	.-1T	J
-Chromosome2	255125508	T	2	..-1A	JB	2	.-1A.-1A	BF	0	*	*	3	.-1A.-1A.-1A	JJJ	0	*	*
-Chromosome2	255127182	A	1	g	F	0	*	*	1	,	J	0	*	*	3	,.g	JsJ
-Chromosome2	255127190	G	1	,	<	0	*	*	1	t	J	0	*	*	4	tTt,	JsJJ
-Chromosome2	255127209	T	1	c	J	0	*	*	1	,	J	0	*	*	4	,.,c	JsJJ
-Chromosome2	255127221	C	1	,	J	0	*	*	1	t	F	0	*	*	4	t.t,	FWFJ
-Chromosome2	255196432	T	1	.-4GATC	:	1	.-4GATC	S	0	*	*	1	*	H	0	*	*
-Chromosome2	255200957	G	0	*	*	1	,-1a	J	1	,-1a	J	0	*	*	1	,-1a	J
-Chromosome2	255212967	A	0	*	*	2	c,	JJ	0	*	*	1	,	J	3	,,c	JJJ
-Chromosome2	255212989	G	0	*	*	2	,a	JJ	0	*	*	1	a	J	3	,,,	FFJ
-Chromosome2	255332613	T	0	*	*	1	,	A	2	,c	AJ	1	c	J	0	*	*
-Chromosome2	255577596	G	0	*	*	0	*	*	2	AA	JJ	1	.	J	2	.A	JJ
-Chromosome2	255585294	G	0	*	*	1	A	s	2	A.	Js	1	.	7	0	*	*
-Chromosome2	255948329	C	0	*	*	2	.T	JJ	3	..T	JJJ	1	.	J	0	*	*
-Chromosome2	255948407	C	0	*	*	2	.T	ss	3	..T	oso	1	.	s	0	*	*
-Chromosome2	255948419	C	0	*	*	2	.G	ss	3	..G	sso	1	.	s	0	*	*
-Chromosome2	255948509	T	0	*	*	1	,	A	3	cc,	JJJ	1	c	J	0	*	*
-Chromosome2	256022880	G	0	*	*	1	.-10CTCAATTTTT	J	2	..	JJ	0	*	*	1	.-10CTCAATTTTT	J
-Chromosome2	256023119	G	0	*	*	2	,,-9attttaaaa	JJ	2	,,	JJ	0	*	*	1	,-9attttaaaa	J
-Chromosome2	256100127	C	1	T	J	2	T.	JJ	0	*	*	1	.	F	0	*	*
-Chromosome2	256143824	G	0	*	*	3	.TT	sJ7	0	*	*	1	.	F	1	T	J
-Chromosome2	256359228	G	0	*	*	1	.-1A	s	0	*	*	1	.	s	2	.-1A.-1A	so
-Chromosome2	256423328	A	0	*	*	0	*	*	1	.-1T	o	1	.-1T	s	1	.-1T	s
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-Chromosome2	256432728	C	0	*	*	1	,	o	2	,T	jJ	0	*	*	1	T	J
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-Chromosome2	256432772	G	0	*	*	1	,	s	2	,T	s7	0	*	*	1	T	J
-Chromosome2	256432782	C	0	*	*	1	,-1a	s	2	,-1a.	sA	0	*	*	1	.	J
-Chromosome2	256432787	C	0	*	*	1	,	_	2	,A	sF	0	*	*	1	A	J
-Chromosome2	256432791	C	0	*	*	1	,	s	2	,A	s<	0	*	*	1	A	J
-Chromosome2	256432799	T	0	*	*	1	,	s	2	,C	sJ	0	*	*	1	C	J
-Chromosome2	256432800	A	0	*	*	1	,	s	2	,T	sJ	0	*	*	1	T	J
-Chromosome2	256432808	A	0	*	*	1	,	s	2	,C	sJ	0	*	*	1	C	J
-Chromosome2	256433352	G	1	.-1A	J	0	*	*	1	.-2AA	J	0	*	*	2	..	JJ
-Chromosome2	256433556	T	1	,-1c	F	0	*	*	1	,-1c	J	0	*	*	1	.-1C	J
-Chromosome2	256437439	G	0	*	*	1	c	J	1	,	J	0	*	*	2	..-1A	sj
-Chromosome2	256535526	G	1	.	J	1	.-1A	p	1	.-1A	s	0	*	*	0	*	*
-Chromosome2	256757252	A	2	.G	JJ	0	*	*	2	GG	sJ	0	*	*	2	TT	<J
-Chromosome2	256902641	T	1	,-1c	H	1	,-1c	H	1	,-1c	H	0	*	*	0	*	*
-Chromosome2	256908255	G	0	*	*	0	*	*	1	,-5tctga	5	1	,	J	1	.-5TCTGA	I
-Chromosome2	256908532	A	0	*	*	1	T	j	2	t,	JJ	0	*	*	1	,	J
-Chromosome2	256908538	G	0	*	*	1	.	s	2	t,	FJ	0	*	*	1	a	F
-Chromosome2	256974716	T	0	*	*	2	aa	FA	2	a,	AF	3	,,,	JJJ	0	*	*
-Chromosome2	256980711	C	1	t	A	1	,	J	3	TT,	ssJ	2	G,	UJ	0	*	*
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-Chromosome2	257259225	C	1	.-2GA	J	1	.-2GA	J	0	*	*	0	*	*	1	.-2GA	7
-Chromosome2	257548765	C	1	.	F	0	*	*	1	a	J	3	..A	JJs	0	*	*
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-Chromosome2	257548772	A	1	T	J	0	*	*	1	,	J	3	TT.	JJs	0	*	*
-Chromosome2	257548773	T	1	G	J	0	*	*	1	,	J	3	GG.	JJo	0	*	*
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-Chromosome2	257548777	G	1	.	J	0	*	*	1	t	J	2	.A	Js	0	*	*
-Chromosome2	257548782	C	1	.	A	0	*	*	1	g	J	3	..G	JJs	0	*	*
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-Chromosome2	257548790	G	1	.	J	0	*	*	1	*	G	3	..*	Jem	0	*	*
-Chromosome2	257548811	G	1	T	J	0	*	*	1	,	J	3	TT.	Fss	0	*	*
-Chromosome2	257548815	A	1	G	J	0	*	*	1	,	J	3	GG.	Aok	0	*	*
-Chromosome2	257548817	C	1	T	J	0	*	*	1	,	J	2	T.	ss	0	*	*
-Chromosome2	257673025	C	0	*	*	1	T	J	1	.	J	0	*	*	2	T.	JJ
-Chromosome2	257673029	G	0	*	*	1	A	J	1	.	J	0	*	*	2	A.	JJ
-Chromosome2	257673082	G	0	*	*	1	A	J	1	.	J	0	*	*	2	A.	JJ
-Chromosome2	257688529	T	0	*	*	1	c	J	1	,	J	2	,c	FJ	3	c,c	JJJ
-Chromosome2	257724599	G	1	.	J	2	.A	JJ	2	A.	JA	0	*	*	0	*	*
-Chromosome2	257724602	T	1	.	J	2	CC	FJ	2	C.	JA	0	*	*	0	*	*
-Chromosome2	257727975	T	0	*	*	1	.-2TA	Y	3	.-2TA.-2TA.-2TA	77Y	0	*	*	2	.-2TA.-2TA	YY
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-Chromosome2	263054589	G	6	,a,aa,	JJJJFJ	2	,,	<A	4	,,aa	JJJJ	0	*	*	2	aa	FJ
-Chromosome2	263281180	T	2	.-3GAA.	JJ	0	*	*	1	.	s	0	*	*	1	.-3GAA	F
-Chromosome2	263331964	A	1	g	J	2	,g	7F	0	*	*	0	*	*	2	,,	AF
-Chromosome2	263431764	G	2	a,	JJ	4	.,a,	`JAF	3	,a,	FJF	0	*	*	8	,,,,,,,,	FJF<7F7F
-Chromosome2	263480620	G	0	*	*	1	C	F	1	.	J	2	C.	FA	0	*	*
-Chromosome2	263513579	G	2	,a	JJ	0	*	*	1	a	J	1	,	J	0	*	*
-Chromosome2	263513591	C	2	,t	FJ	0	*	*	1	t	<	1	,	F	0	*	*
-Chromosome2	263804752	G	1	.	J	1	T	J	0	*	*	3	..T	FJJ	0	*	*
-Chromosome2	263804911	C	1	,	F	1	t	J	0	*	*	3	,t,	JA<	0	*	*
-Chromosome2	263804934	T	1	,	J	1	c	J	0	*	*	3	cc,	JJJ	0	*	*
-Chromosome2	263812195	A	3	...	esJ	1	*	o	1	.-1G	J	0	*	*	0	*	*
-Chromosome2	263812208	C	3	.T.	ssJ	1	T	s	1	.	J	0	*	*	0	*	*
-Chromosome2	263812215	G	3	..T	ssJ	1	.	s	1	A	F	0	*	*	0	*	*
-Chromosome2	263812228	G	3	..a	s<J	1	.	s	1	A	J	0	*	*	0	*	*
-Chromosome2	263838108	A	0	*	*	0	*	*	2	.G	ss	2	,,	JJ	1	G	s
-Chromosome2	263838113	C	0	*	*	0	*	*	2	.A	os	2	,,	JF	1	A	s
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-Chromosome2	263978859	G	0	*	*	1	.	J	1	A	J	0	*	*	4	.A..	JJJJ
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-Chromosome2	264070721	A	2	.G	oj	0	*	*	0	*	*	2	G.	oo	2	TT	ee
-Chromosome2	264070755	A	2	G.	kf	0	*	*	0	*	*	2	..	\s	2	GG	fj
-Chromosome2	264070778	C	2	,t	7J	0	*	*	0	*	*	2	T.	Ns	1	,	A
-Chromosome2	264070782	C	2	tt	FF	0	*	*	0	*	*	2	t.	Js	2	,,	FA
-Chromosome2	264070783	G	2	tt	<J	0	*	*	0	*	*	2	t.	Js	2	,,	<J
-Chromosome2	264115413	C	1	a	J	0	*	*	2	,a	JJ	1	.	s	0	*	*
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-Chromosome2	264528349	C	0	*	*	2	.G	os	1	A	s	0	*	*	4	...G	osss
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-Chromosome2	265543539	G	2	a,	JJ	1	,	J	0	*	*	0	*	*	1	a	J
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-Chromosome2	265969260	A	4	gg,g	FJ<J	0	*	*	2	g,	JJ	1	.	s	1	g	J
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-Chromosome2	268319939	C	0	*	*	0	*	*	2	.-3AAA.-3AAA	JJ	1	.	J	1	.-3AAA	J
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-Chromosome2	270258167	T	3	CC.	JJF	3	CAC	JJJ	4	C.C.	JJJF	1	.	J	3	..A	JJJ
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-Chromosome2	278380441	T	18	,,,,,,,,,,,,,,,,,+1a,	JJJJJJAJJJJJJJJJJF	16	,,,-1a,,,,,,,,,,,,,	JJJJJJ<JJJJJJFJJ	31	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,+1a,	JJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJ	23	,,,,,,,,,,,,,,,,,,,,,+1a,+1a,+1a	JJJJJJJJJJFJJJJJJFJJJJJ	36	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJ<JJFJJJJJJJJJJJJJJJJFJJJJJJF
-Chromosome2	278396000	G	0	*	*	0	*	*	2	A.	JF	1	A	J	3	...	JJA
-Chromosome2	278447204	T	2	,C	FJ	1	.	J	0	*	*	2	cc	JJ	0	*	*
-Chromosome2	278519381	C	0	*	*	2	.T	ss	1	.	J	2	.T	sJ	0	*	*
-Chromosome2	278520463	G	1	,-2at	F	0	*	*	1	,-2at	J	0	*	*	1	,	F
-Chromosome2	279183242	C	1	.-1G	J	1	.-1G	J	0	*	*	1	.-1G	J	0	*	*
-Chromosome2	279205546	C	0	*	*	1	t	F	2	g,	J<	0	*	*	1	,	J
-Chromosome2	279295869	A	0	*	*	1	.-1G	\	1	.-1G	J	0	*	*	2	..	<J
-Chromosome2	279311497	G	0	*	*	1	.	A	2	.T	sJ	1	C	J	0	*	*
-Chromosome2	279311645	C	0	*	*	1	,-1a	A	1	,-1a	J	1	,-1a	J	0	*	*
-Chromosome2	279446680	A	0	*	*	0	*	*	1	g	J	1	.	J	2	*,	5F
-Chromosome2	279446723	G	0	*	*	0	*	*	1	a	J	1	.	o	2	a,	JF
-Chromosome2	279446743	T	0	*	*	0	*	*	1	a	J	1	.	o	2	a,	JJ
-Chromosome2	279496710	G	1	c	J	0	*	*	2	,c	<7	1	.	s	0	*	*
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-Chromosome2	280261149	G	1	.-2TT	J	0	*	*	1	.-2TT	s	1	.-1T	J	1	.-2TT	A
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-Chromosome2	280261399	T	2	,g	JJ	0	*	*	0	*	*	1	,	<	2	,g	JJ
-Chromosome2	280426904	C	3	.-1T.-1T.-1T	JJJ	1	.-1T	A	4	.-1T.-1T.-1T.-1T	JJJJ	1	.-1T	J	5	.-1T.-1T.-1T.-1T.-1T	JJJFA
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-Chromosome2	280670472	C	1	.	J	0	*	*	1	T	J	0	*	*	2	T.	JJ
-Chromosome2	280670492	C	1	.	J	0	*	*	1	A	<	0	*	*	2	A.	IJ
-Chromosome2	280670856	C	1	t	J	0	*	*	0	*	*	1	,	F	2	t,	HF
-Chromosome2	280670885	A	1	g	J	0	*	*	1	t	J	1	,	J	2	tg	FF
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-Chromosome2	280706975	T	1	c	o	0	*	*	2	c.	jJ	1	.	J	0	*	*
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-Chromosome2	280712618	C	0	*	*	2	A,	oJ	1	.	J	0	*	*	1	,-1a	7
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-Chromosome2	281104698	G	11	,,,,,,,cc,,	JFAJJFF<FJF	9	,,,,c,,,,	JJAJFJJAF	12	,,,,,,c,,,,,	J7JJJFJ<JFJJ	8	c,,,,,,,	JJJFJJJJ	11	,,,,,,,,,,,	FFJJAJFJ<7J
-Chromosome2	281111036	T	0	*	*	2	G^X.	JA	5	GGGG^X.	JJJJA	1	G	J	2	^X.^X.	AA
-Chromosome2	281114678	T	2	.-1C.-1C	JJ	1	.-1C	J	2	.-1C.-1C	AJ	2	.-1C.-1C	JF	3	.-1C.-1C.-1C	JJJ
-Chromosome2	281115137	T	20	,,,cc,,,,,c,,,,,,,,,	FJJ7<JJ7JJFJJJJJJJJJ	8	,,,ccc,,	JAJJJJJJ	6	,,c,,,	JJJJJJ	18	,.c,,,,,,,,,c,,,,,	JsJJFFJFJJJJJJJJJJ	22	,,c,c,,,c,,,,,c,,,,,,,	FJFJFJJFJJJJJJJFJJJJJV
-Chromosome2	281115162	G	19	,,,t,,,,,t,,,,,,,,,	JJAFJJAJJJJJJJJJJJJ	8	,,,ttt,,	JJJJJJJJ	6	,,t,,,	JJJJJJ	19	,.t,,,,,,,,t,t,,,t,	JsJJJJJJJJJ7JJJJJJJ	21	,,,,t,,,t,,,,,t,,,,,,	JFJJJJJJJJJJJJJJJJJJV
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-Chromosome2	281115164	T	15	a,,,,,,,,,,,,,,	JJJFAJJAJJJJJAJ	8	,,,aaa,,	J<JJJJJJ	6	,,a,,,	JJJFJJ	17	,.a,,,,,,,,a,,,,,	JVJJJJJJJJJJJJJJJ	21	,,,a,,,a,,,,,a,,,,,,,	JJJJJJJFJJJJJJJJJJJJj
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-Chromosome2	281115608	T	11	.......C...	JJJFJJJJFJJ	2	C.	JJ	12	....C..C..CC	AJJJJJAJJJFJ	7	..C..C.	JJJJJJJ	10	C.C.......	7JJJJFJJJA
-Chromosome2	281115622	T	9	..+1G.......	JJJJJJFJJ	2	..	FF	8	.+1G.......	FAJF<JJJ	5	..-1G.-1G..	JJJAJ	10	......-1G....	7JFJJFJJJJ
-Chromosome2	281126161	A	10	*,,,,,,,t,+1t	EJJJJJJJJJ	6	,,,,t,	JJAJJF	18	,,,t,,t,,,,,t,,t,,+1t	JJJ<FJJJJJJJJJJJJJ	20	,,,*,,*,,ttt,,t,,tt,+1t	JJAEFFEJJJJFJJJJJJJF	19	***,,,tt,ttt,ttt,,,+1t	EEEJJJJJJJJFJJJJJJJ
-Chromosome2	281126193	T	12	a,,,,,,,,,a,	JJJJJJF<JJJJ	6	,,,,a,	JJJJJF	16	,,a,a,,,,,a,,,,,	JJFJJJJFJJFJAJJJ	17	,a,,a,,aa,,a,,aa,	JJJFJJJJJJJFJJJJJ	18	aaa,,,aa,aaaaaa,,,	JJJJJFJJJJJJJJJJJF
-Chromosome2	281126194	T	12	a,,,,,,,,,a,	JJJJJJFJJJJJ	6	,,,,a,	FJFJJJ	17	,,a,,a,,,,,a,,,,,	JJJAJJJJFJJJJFJJJ	17	,a,a,,aaa,,a,,aa,	JJJJJJJJFJJFJJJJJ	19	aaa,,,aa,aaa,aaa,,,	JJFJJJJJJFJ<JJJJJJA
-Chromosome2	281126196	G	12	a,,,,,,,,,a,	JJJJJJAJFJJJ	6	,,,,a,	JJJJJJ	16	,,a,,a,,,,a,,,,,	JJJFJJJJJJJJJJJJ	17	,a,,a,,aa,,a,,aa,	JJFJJJJJJJJJJJJJJ	17	aaa,,,aa,aa,aaa,,	JJAJJJJJJJJJJJFJJ
-Chromosome2	281126208	G	12	t,,,,,,,,,t,	JJJJJF7JJFJJ	6	,,,,t,	JJJJJJ	17	,,t,,t,,,,,t,,,,,	JJAJJJJJAJJJJJJJF	17	t,,t,,ttt,,t,,tt,	JJ<JJJJJJJJJJJJJF	19	ttt,,,tt,ttt,ttt,,,	JJJJJJJJJJJJJJJJFJJ
-Chromosome2	281126217	A	12	g,,,,,,,,,g,	JJJJJFJJJJJJ	6	,,,,g,	JJFJJJ	17	,,g,,g,,t,,g,,,,,	JJJFJJJJ7JJJJJJJJ	18	,gg,g,,ggg,,g,,gg,	FJDFJJJJJJJJJJJJJJ	19	ggg,,,gg,ggg,ggg,,,	FJJJJJJJJJJFJJJJJJJ
-Chromosome2	281126686	C	2	,+4atat,+4atat	JJ	0	*	*	4	,,+4atat,+4atat,	7JJ7	5	,+4atat,,+4atat,+4atat,	JFJFJ	0	*	*
-Chromosome2	281126775	G	2	a,	JJ	0	*	*	4	,,,a	JJJF	4	,,,,	JJJJ	0	*	*
-Chromosome2	281293282	G	0	*	*	1	,-1a	J	1	,-1a	A	1	.-1A	s	0	*	*
-Chromosome2	281334314	G	2	,a	JJ	1	A	o	0	*	*	1	c	J	0	*	*
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-Chromosome2	281379290	A	0	*	*	0	*	*	3	GG.	JFJ	1	.	J	1	G	J
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-Chromosome2	281379336	G	0	*	*	0	*	*	3	AA.	WoJ	1	.	s	1	A	s
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-Chromosome2	282453203	T	5	c,c,,	JJJJJ	0	*	*	9	,,,,,,c,,	JJJJJJJJJ	1	c	J	6	,,c,,,	JJJJJJ
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-Chromosome2	282579707	A	16	..G...G.........	JJJJJFJJAJJ7JJFJ	14	......G.......	JFJJJJJJJJJFJJ	17	......G..........	JJJJJJJJJJJJJJJJJ	15	...............	JJJJJJJJJJJJFJJ	32	...G....G...G..G................	JJJJJJJJJ<FJJFFJFJJJJJJJAJJJJJJJ
-Chromosome2	282579847	C	16	..............g.	<FJAF<JAJJJFJAJJ	14	......A.......	FJJJJ97JJJJJFs	17	.................	JJFJJAJJAJFAFFfsJ	16	........A.......	JJA7J<JF7FJAFJks	29	...............A.............	J<FJAFoJF7AJFJA;JFFAJAJJJF<JJ
-Chromosome2	282579927	G	16	,,,,,,,a,,,,a,,,	J<JJFFFJAJFJAF<J	15	.,,a,,,,,,,,,,,	sJJFJJAFJ<JJJJA	20	,,,,,,,,,,,t,,,,,,,,	JJJJAJJJFJJJFJJJJJJJ	17	,,,,,,,,,,,,,,,,,	JJJ<JFFJFJFJFJJF<	32	,,,,,,,a,,,,,,,,,a,,,,,,,,,,,,,,	JJAJJF7J<JJJJJJJJJJFJJJ7JJJJ<AJJ
-Chromosome2	282580038	A	15	gg,,,g,,,,,,,g,	FJJJJJJJJJJJFJJ	14	,g,g,,g,,gg,,,	JJJJJFJJJJJJJJ	16	,,gg,,,g,,,,,,,,	JJJJJJJJJJJJJJJJ	14	g,,g,,,,,,,ggg	JJJJJJJJJJJJJF	31	,,gg,,,,,,,gg,,,,,ggg,,g,,,g,,,	JJJJJJJJFJJJJJJJJJAJJJFJFJJJFJJ
-Chromosome2	282803802	T	0	*	*	1	.	j	1	a	A	0	*	*	2	a,	JJ
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-Chromosome2	283493242	C	28	.,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,,,,,,,,,,,,	oJJJEJFJFJF<JFJJJJ7JJJAJFJJJ	68	.,.,...,,,.,,+1g,+1g,+1g,+1g,+1g,+1g,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,.	sJkJsWsJJJ`FJJJJJJFJJFJJAJFJJF7JF<JJJFJJJJJFJFJFJJAJJJFJJJJ7JJJJJJJo	86	.,+1g,..,.,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,.	oJJHsJs;F<JJJFFJEJJJJJJJJJJJJFAAJJJJGEJEJ7JJJJFAJJJJ77JJAJJJFFJJJJJF<JJJJJJF<JJJJJJJJs	95	..,.,+1g.,...,.,,+1g..,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,,,,,,,,,,,t,,,,,,g,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,+1g.,	soJjAoJsos<jJJssJJJ7JJJJJJJJJ7JJJJJJAJJJJFJJJJJ<AJJJJ7JJJFJJJJJAJFFJAJJJJJFFJ7JJJJJAJFFFJJJJJsF	61	,+1g,.,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,	J<WJJJFJFJJ7JFJJJJJJFJ<FJFJFJJJAJJFJJJJAJFJJJJJJJJJJJJJJAFJ7J
-Chromosome2	283524281	T	0	*	*	2	,c	JJ	1	c	J	0	*	*	1	,	F
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-Chromosome2	283946142	G	0	*	*	0	*	*	1	.-8GAGAGAGA	D	1	.-8GAGAGAGA	@	1	.	<
-Chromosome2	283968398	G	2	,+1t,+1t	JJ	1	,+1t	F	0	*	*	0	*	*	1	a	J
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-Chromosome2	284227729	T	0	*	*	0	*	*	2	.C	LF	1	.	L	2	.C	LF
-Chromosome2	284365691	A	1	,-2gt	J	1	.-2GT	o	0	*	*	0	*	*	1	,-2gt	J
-Chromosome2	284450082	A	1	,-3tag	:	0	*	*	2	,,-3tag	7:	1	,-3tag	8	0	*	*
-Chromosome2	284912508	T	0	*	*	3	..C	JJJ	1	.	J	3	C..	JJJ	0	*	*
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-Chromosome2	284970409	T	0	*	*	1	C	s	1	.	J	0	*	*	4	C..C	JJJJ
-Chromosome2	285290600	C	0	*	*	1	,-7agctgag	?	1	,-7agctgag	>	0	*	*	1	,-7agctgag	>
-Chromosome2	285290643	G	0	*	*	1	,-3tat	F	1	,-3tat	J	0	*	*	1	,-3tat	J
-Chromosome2	285290924	A	0	*	*	1	.-3GGT	s	1	,	7	1	.-3GGT	J	0	*	*
-Chromosome2	285545393	A	0	*	*	0	*	*	1	.-4CCGT	J	2	.-4CCGT,-4ccgt	ss	1	.-4CCGT	7
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-Chromosome2	285626860	T	1	.-1C	s	2	.C	sJ	0	*	*	0	*	*	1	.-1C	J
-Chromosome2	285626874	A	1	.-8TCGATCCT	I	2	..	jF	0	*	*	0	*	*	1	.-8TCGATCCT	5
-Chromosome2	285641219	G	2	..	ss	1	T	J	2	.T	JJ	0	*	*	0	*	*
-Chromosome2	285641234	G	2	,,	JJ	1	T	J	2	.T	JF	0	*	*	0	*	*
-Chromosome2	285641284	A	2	,,	JJ	1	G	o	3	G,.	MAs	0	*	*	0	*	*
-Chromosome2	285641316	C	2	,,	JJ	1	G	s	3	G,.	fJs	0	*	*	0	*	*
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-Chromosome2	285929298	A	1	.	J	0	*	*	0	*	*	1	.-5TTTAG	G	1	.-5TTTAG	;
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-Chromosome2	285962129	G	0	*	*	1	T	J	2	T.	JJ	3	.T.	JJJ	0	*	*
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-Chromosome3	1326456	C	1	t	J	0	*	*	0	*	*	3	,,,	JJJ	3	,t,	JJJ
-Chromosome3	1326480	C	1	,	J	0	*	*	0	*	*	3	t,,	JJJ	3	,t,	JJJ
-Chromosome3	1603201	C	6	,T....	sFJJFJ	0	*	*	5	..T..	JJJFJ	2	T.	JJ	2	..	FA
-Chromosome3	1603290	G	5	,.A.A	sJF<J	2	A.	FJ	4	A...	JJoJ	2	..	JF	3	A..	JAJ
-Chromosome3	1727920	T	6	GGG.GG	JJJJJJ	10	GGGGGGGGGG	AJJJJJJJJJ	15	GGGGGG.GGGGGGG.	AJJJJJJJJJJJJJs	10	GGG.GGGGGG	JJJoJJJAJJ	12	GG.GGGGGGGGG	FJJJJJJJJJJJ
-Chromosome3	1728035	G	6	,,aa,,	JJJJJJ	11	,,,,aa,,,,,	AAJJJJJJJJJ	14	aa,a,,a,,,,aa,	FJJJJJJJJJJJJJ	9	,,aa,,,,,	JJJJJJJFJ	13	,,a,a,,,aa,aa	JJJJJJJJJFJJJ
-Chromosome3	1728040	T	6	,,gc,,	JJJJJJ	11	,,,,g,,,,,,	FJAJJJJJJFJ	15	cc,,c,,,,,,,g,g	<FJJJFJJJJJJJJF	9	,,gg,g,g,	JJJJJJJJJ	13	c,g,,,,,gg,gg	JJJJJJJJJFFJJ
-Chromosome3	1956876	T	0	*	*	1	.	J	2	.G	JJ	1	G	:	0	*	*
-Chromosome3	1956890	T	0	*	*	1	.	k	2	.C	kP	1	C	s	0	*	*
-Chromosome3	1956947	C	0	*	*	1	.	s	2	.G	sk	1	G	s	0	*	*
-Chromosome3	2190575	T	2	A.	os	0	*	*	0	*	*	1	A	j	1	.	s
-Chromosome3	2378313	G	2	A$.$	Jn	5	.$.$A$.$.	nnJns	7	.$A$.$.$.$.$.$	nFjn`nn	3	A$A$.$	9Sj	5	.$A$A$.$a	nJJnJ
-Chromosome3	2778404	A	0	*	*	0	*	*	2	.G	ss	1	.	e	2	G,	sJ
-Chromosome3	3041650	G	0	*	*	1	A	d	0	*	*	3	AA.	hoJ	1	.	]
-Chromosome3	3041657	G	0	*	*	1	T	g	0	*	*	3	.T.	soJ	1	.	s
-Chromosome3	3041739	T	0	*	*	1	g	J	0	*	*	3	g.,	JJJ	1	,	J
-Chromosome3	3097674	C	1	,	A	0	*	*	2	G,	sJ	1	G	s	0	*	*
-Chromosome3	3164186	G	1	.-1C	J	0	*	*	1	.-1C	J	1	.-1C	J	1	.-1C	J
-Chromosome3	3164395	G	1	A	s	0	*	*	2	A,	FA	1	.	s	0	*	*
-Chromosome3	3164449	C	2	t,	JJ	1	.	s	2	T,	sA	3	,.t	FsA	1	t	F
-Chromosome3	3164554	C	1	,	J	0	*	*	1	,-1t	J	1	,-1t	J	1	,-1t	J
-Chromosome3	3165071	G	1	,	J	0	*	*	2	,C	Fs	1	C	s	0	*	*
-Chromosome3	3165127	A	1	,	F	0	*	*	2	,C	Js	1	C	s	0	*	*
-Chromosome3	3165143	G	1	,	J	0	*	*	2	,T	Fs	1	T	s	0	*	*
-Chromosome3	3165152	G	1	,	J	0	*	*	2	,A	<O	1	A	O	0	*	*
-Chromosome3	3202623	G	0	*	*	2	t,	JJ	0	*	*	1	t	J	1	,	J
-Chromosome3	3234689	A	0	*	*	1	.	s	0	*	*	2	.G	ss	2	,G	os
-Chromosome3	3251333	C	0	*	*	1	,-1a	s	1	,	s	1	.-1A	F	0	*	*
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-Chromosome3	4005764	G	0	*	*	0	*	*	1	.-1C	F	1	.	J	1	.-1C	s
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-Chromosome3	4085315	A	0	*	*	1	G	s	0	*	*	2	..	JJ	2	G.	JF
-Chromosome3	4085327	G	0	*	*	1	A	s	0	*	*	2	.A	JJ	2	A.	JJ
-Chromosome3	4085369	A	0	*	*	1	G	s	0	*	*	2	.G	Js	2	G.	oe
-Chromosome3	4085382	T	0	*	*	1	G	s	0	*	*	2	..	Js	2	G.	sj
-Chromosome3	4085387	G	0	*	*	1	T	s	0	*	*	2	.T	Js	2	T.	os
-Chromosome3	4085423	C	0	*	*	1	T	s	0	*	*	2	.t	AJ	2	T.	so
-Chromosome3	4146114	G	2	T.	sJ	1	C	F	0	*	*	0	*	*	1	.	J
-Chromosome3	4146118	G	2	C.	sJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome3	4146121	G	2	.A	sJ	1	.	J	0	*	*	0	*	*	1	A	J
-Chromosome3	4146133	G	2	A.	sJ	1	A	J	0	*	*	0	*	*	1	.	J
-Chromosome3	4148817	A	0	*	*	0	*	*	1	.-1T	A	1	.-1T	J	2	.-1T.-1T	J<
-Chromosome3	4148828	A	0	*	*	0	*	*	1	.-1T	J	1	.-1T	J	2	..-1T	JJ
-Chromosome3	4725211	G	0	*	*	1	,	J	3	,,t	JJJ	1	t	J	0	*	*
-Chromosome3	4725616	T	0	*	*	1	C	s	0	*	*	1	.	F	2	.C	JJ
-Chromosome3	4725619	C	0	*	*	1	T	s	0	*	*	1	.	J	2	.T	JJ
-Chromosome3	4725621	G	0	*	*	1	A	s	0	*	*	2	.+1T^].	E=	2	.A	JJ
-Chromosome3	4725654	C	0	*	*	1	T	s	0	*	*	2	..	Js	2	.T	AJ
-Chromosome3	4725816	A	0	*	*	1	.	s	0	*	*	1	t	A	3	,,t	7FJ
-Chromosome3	4725820	C	0	*	*	1	.	s	0	*	*	1	g	A	3	,,g	AJJ
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-Chromosome3	4725839	T	0	*	*	1	.	s	0	*	*	1	c	J	3	,,c	7<J
-Chromosome3	4725844	G	0	*	*	1	.	s	0	*	*	1	,-4agca	8	2	,,-4agca	J8
-Chromosome3	4725872	T	0	*	*	1	.	o	0	*	*	1	g	J	2	,g	FJ
-Chromosome3	4725878	G	0	*	*	1	.	s	0	*	*	1	t	F	3	,,t	<<J
-Chromosome3	4725885	C	0	*	*	1	t	J	0	*	*	1	,	F	3	,t,	JFJ
-Chromosome3	4725886	G	0	*	*	1	t	J	0	*	*	1	,	J	3	,t,	JFJ
-Chromosome3	4725888	G	0	*	*	1	,	J	0	*	*	1	t	F	3	,,t	JAJ
-Chromosome3	4725907	A	0	*	*	1	t	J	0	*	*	1	,	F	3	,t,	JAJ
-Chromosome3	4732021	A	1	.	A	2	G.	<A	0	*	*	0	*	*	1	G	J
-Chromosome3	4732032	T	1	.	J	2	.C	7J	0	*	*	0	*	*	1	C	J
-Chromosome3	4771251	T	1	,	J	0	*	*	0	*	*	1	G	s	2	G,	s7
-Chromosome3	4771265	G	1	,	J	0	*	*	0	*	*	1	A	o	2	A,	o7
-Chromosome3	4771340	G	1	,	F	0	*	*	0	*	*	1	c	J	2	,c	<F
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-Chromosome3	4771348	A	1	,	F	0	*	*	0	*	*	1	g	J	2	,g	AJ
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-Chromosome3	5027149	G	2	cc	JJ	2	,c	7F	2	,c	JJ	0	*	*	0	*	*
-Chromosome3	5027159	A	2	gg	JJ	2	,g	FJ	2	,g	AJ	0	*	*	0	*	*
-Chromosome3	5027169	A	2	gg	JJ	2	,g	FJ	2	,g	JJ	0	*	*	0	*	*
-Chromosome3	5027191	G	2	aa	JJ	2	,a	AJ	2	,a	JJ	0	*	*	0	*	*
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-Chromosome3	5027194	G	2	aa	AJ	2	,a	FF	2	,a	JJ	0	*	*	0	*	*
-Chromosome3	5027196	A	2	gg	JJ	2	,g	AJ	2	,g	FJ	0	*	*	0	*	*
-Chromosome3	5027198	C	2	tt	JJ	2	,t	FF	2	,t	JJ	0	*	*	0	*	*
-Chromosome3	5027216	C	2	tt	JJ	2	,t	FJ	2	,t	JJ	0	*	*	0	*	*
-Chromosome3	5027220	T	2	cc	JJ	2	,c	AJ	2	,c	JJ	0	*	*	0	*	*
-Chromosome3	5027221	G	2	aa	JJ	2	,a	JJ	2	,a	JJ	0	*	*	0	*	*
-Chromosome3	5027240	C	2	tt	JJ	2	,t	FJ	1	,	J	0	*	*	0	*	*
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-Chromosome3	5027260	G	2	aa	JJ	2	,a	JJ	2	,a	JJ	0	*	*	0	*	*
-Chromosome3	5082847	G	1	t	7	0	*	*	2	a,	FF	0	*	*	1	,	7
-Chromosome3	5082866	C	1	g	J	0	*	*	2	a,	AJ	0	*	*	1	,	F
-Chromosome3	5169853	C	0	*	*	1	T	J	2	..	Js	0	*	*	2	T.	JJ
-Chromosome3	5169918	C	0	*	*	1	.+1T	n	2	.+1T.+1T	qq	0	*	*	2	.+1T.+1T	qU
-Chromosome3	5169961	T	0	*	*	1	C	o	2	..	os	0	*	*	2	.C	so
-Chromosome3	5169982	C	0	*	*	1	T	d	1	.	s	0	*	*	2	.T	oS
-Chromosome3	5170827	G	0	*	*	1	,-9gagaaataa	6	1	,-9gagaaataa	6	2	.,	sJ	0	*	*
-Chromosome3	5212416	A	1	,-1c	J	1	,-1c	J	2	,-1c,-1c	JJ	0	*	*	0	*	*
-Chromosome3	5380240	A	0	*	*	5	.....	oosjo	9	.....C..g	sosjoRVVA	11	.........C.	ssVooooRss`	11	........C..	oossosjosos
-Chromosome3	5401210	A	3	CC.	AJA	0	*	*	0	*	*	2	C.	JF	2	..	A<
-Chromosome3	5510623	T	1	C	<	0	*	*	2	.C	F?	1	.	s	5	..C..	AJ?JJ
-Chromosome3	5608564	G	1	,	J	1	t	J	0	*	*	0	*	*	2	t,	JJ
-Chromosome3	5722506	G	2	CC	so	1	,	F	0	*	*	2	c,	JA	0	*	*
-Chromosome3	5722541	T	2	cc	JJ	1	,	J	0	*	*	2	,c	JJ	0	*	*
-Chromosome3	5722632	C	2	gg	JJ	1	,	J	0	*	*	2	,g	JJ	0	*	*
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-Chromosome3	5798042	G	3	,,,	JJJ	2	,c	JJ	2	c,	JJ	5	c,ccc	JJJJJ	2	,c	JF
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-Chromosome3	5810822	C	0	*	*	2	.T	so	0	*	*	1	T	F	1	.	J
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-Chromosome3	5810904	G	0	*	*	2	,a	JJ	0	*	*	1	a	J	1	,	J
-Chromosome3	5836098	A	1	.	A	0	*	*	1	G	7	2	G.	JF	0	*	*
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-Chromosome3	6041099	A	0	*	*	2	.G	os	0	*	*	1	.	o	1	G	s
-Chromosome3	6041130	C	0	*	*	2	,a	JJ	0	*	*	1	,	J	1	a	J
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-Chromosome3	6364202	T	0	*	*	0	*	*	2	AA	<s	2	.A	Js	1	.	J
-Chromosome3	6364236	T	0	*	*	0	*	*	2	GG	es	2	.G	Js	1	.	J
-Chromosome3	6364282	C	0	*	*	0	*	*	1	.	s	2	,$g	AJ	1	g	J
-Chromosome3	6549346	C	0	*	*	1	,	J	6	,,,+1t,,+1t,+1t	FJEGED	3	,+1t,+1t,+1t	EEE	0	*	*
-Chromosome3	6629696	C	2	.A	JJ	0	*	*	1	.	A	1	A	J	0	*	*
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-Chromosome3	6629822	A	2	,,-2tc	JF	1	.-2TC	7	1	,-2tc	J	1	,	F	0	*	*
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-Chromosome3	6629912	C	2	,-1a,	JJ	0	*	*	1	,	F	1	,-1a	J	0	*	*
-Chromosome3	6635609	G	0	*	*	0	*	*	1	C	F	2	..	JJ	2	C.	FJ
-Chromosome3	6653667	C	1	t	A	0	*	*	1	,	J	0	*	*	2	,g	AJ
-Chromosome3	6653730	T	1	c	J	0	*	*	1	,	J	0	*	*	2	,c	JJ
-Chromosome3	6682308	A	0	*	*	0	*	*	1	.	J	2	G.	JJ	2	G.	JJ
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-Chromosome3	6687999	A	2	..	JJ	0	*	*	2	.G	JJ	1	G	J	0	*	*
-Chromosome3	6688013	G	2	..	JF	0	*	*	2	.A	JJ	1	A	J	0	*	*
-Chromosome3	6688028	T	2	..	AJ	0	*	*	2	.C	JJ	1	C	J	0	*	*
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-Chromosome3	6783056	C	1	.	<	2	.A	J@	0	*	*	0	*	*	1	A	A
-Chromosome3	6783142	C	1	.	A	2	.G	J@	0	*	*	0	*	*	1	G	8
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-Chromosome3	6903545	A	0	*	*	0	*	*	1	G	J	2	..	JJ	3	..G	JJJ
-Chromosome3	6903834	C	0	*	*	0	*	*	1	t	<	2	,,	JF	3	,,t	AJJ
-Chromosome3	6972857	C	1	,-6tgacag	6	1	.-6TGACAG	K	0	*	*	1	.	s	0	*	*
-Chromosome3	6972915	C	1	,+3gga	J	2	.+3GGA,+3gga	JJ	0	*	*	2	.+3GGA,+3gga	JJ	0	*	*
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-Chromosome3	7088018	G	3	,aa	JJJ	0	*	*	3	,aa	JJJ	0	*	*	2	,,	JJ
-Chromosome3	7148967	C	3	T.T	JJJ	0	*	*	1	T	F	0	*	*	3	..G	FJ7
-Chromosome3	7149040	T	2	..	JJ	0	*	*	1	G	7	0	*	*	3	..G	Fo7
-Chromosome3	7164129	C	0	*	*	0	*	*	4	.TTT	JAFJ	6	.T..Tt	JpAJHo	3	...	JJ7
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-Chromosome3	7164456	A	0	*	*	1	,	J	2	c,	J<	3	c,c	JJF	3	,cc	JJF
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-Chromosome3	7341118	C	0	*	*	0	*	*	1	T	j	2	A.	js	2	..	os
-Chromosome3	7442102	A	0	*	*	1	,-2ag	5	0	*	*	1	,-2ag	5	1	,-2ag	5
-Chromosome3	7442106	A	0	*	*	1	,-2ct	6	0	*	*	1	,-2ct	6	1	,-2ct	6
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-Chromosome3	7619505	G	1	a	J	3	...	JJJ	0	*	*	2	.A	sJ	0	*	*
-Chromosome3	7619529	G	1	a	J	3	...	JJJ	0	*	*	2	.A	oo	0	*	*
-Chromosome3	7721682	G	1	,	F	4	,,a,	JJAJ	0	*	*	0	*	*	1	a	J
-Chromosome3	7748070	T	1	.	J	1	.-6GTGGCA	9	0	*	*	0	*	*	1	.-6GTGGCA	9
-Chromosome3	7869272	G	1	.	J	2	.-3GCA.-3GCA	;;	1	.-3GCA	;	0	*	*	1	.-3GCA	;
-Chromosome3	8119197	T	0	*	*	0	*	*	1	.-1C	o	1	,-1c	E	1	,	F
-Chromosome3	8210388	A	0	*	*	1	,-1t	7	0	*	*	1	,-1t	A	1	,	A
-Chromosome3	8221764	A	1	.-1G	<	1	,-1g	A	0	*	*	0	*	*	1	.-1G	J
-Chromosome3	8234185	A	2	CC	Ro	0	*	*	2	.C	ss	1	.	J	0	*	*
-Chromosome3	8234212	G	2	cc	F<	0	*	*	2	C,	oJ	1	.	J	0	*	*
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-Chromosome3	52662150	T	2	A.	JJ	0	*	*	2	A.	<J	5	AA..A	JJJJJ	2	..	JJ
-Chromosome3	52668634	C	0	*	*	0	*	*	1	t	J	2	t,	sF	1	,	J
-Chromosome3	52787907	A	0	*	*	0	*	*	1	,	J	1	.-2GT	V	1	,-2gt	J
-Chromosome3	52871079	T	2	.C	sJ	2	**	AA	4	.C..	oV<s	1	.	s	0	*	*
-Chromosome3	53074866	C	0	*	*	0	*	*	1	.	s	2	g,	ss	1	T	e
-Chromosome3	53131586	T	1	A	J	0	*	*	1	C	J	0	*	*	2	CA	JJ
-Chromosome3	53131594	C	1	.	J	0	*	*	1	T	J	0	*	*	2	.T	JJ
-Chromosome3	53369419	C	1	.	J	2	T.	FJ	1	T	J	0	*	*	3	TT.	JJJ
-Chromosome3	53369434	G	1	.	J	2	.A	JJ	1	A	J	0	*	*	3	A..	JJJ
-Chromosome3	53369459	A	1	.-1C	A	2	.-1C.-1C	AA	1	.-1C	A	0	*	*	3	.-1C.-1C.-1C	AAA
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-Chromosome3	53678334	A	0	*	*	0	*	*	3	C.C	J<J	2	..	JJ	2	GG	JF
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-Chromosome3	53752528	G	3	a,,	JJF	3	.,,	sJJ	4	.,aa	sJJF	0	*	*	1	a	J
-Chromosome3	53798116	A	0	*	*	2	.C	JJ	2	..	JJ	0	*	*	3	C..	JJA
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-Chromosome3	58603087	G	0	*	*	2	T.	Js	1	.	J	1	T	s	0	*	*
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-Chromosome3	58934955	C	2	**	ee	0	*	*	1	.-3GAT	s	0	*	*	1	.-3GAT	s
-Chromosome3	59027686	A	1	.-8TGTATGTT	5	0	*	*	1	.	J	1	.-8TGTATGTT	5	0	*	*
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-Chromosome3	59196570	A	1	,	F	0	*	*	1	.-5TTGAT	I	1	.-5TTGAT	I	0	*	*
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-Chromosome3	77934077	G	0	*	*	0	*	*	2	.T	oj	1	.	s	1	T	a
-Chromosome3	77934103	C	0	*	*	0	*	*	2	.T	eo	1	.	s	1	t	J
-Chromosome3	77934155	C	0	*	*	0	*	*	2	.T	oo	1	.	s	1	t	J
-Chromosome3	77934159	A	0	*	*	0	*	*	2	.G	Vs	1	.	o	1	g	F
-Chromosome3	77970214	C	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J	1	,-1t	J
-Chromosome3	78189566	C	0	*	*	0	*	*	2	.T	J<	3	...	JFJ	2	T.	JJ
-Chromosome3	78189697	C	0	*	*	0	*	*	2	,t	JF	3	,,,	JJF	2	t,	AJ
-Chromosome3	78189824	G	0	*	*	0	*	*	1	a	J	1	,	J	2	a,	JJ
-Chromosome3	78212104	C	1	a	J	2	a,	JJ	1	t	J	0	*	*	1	,	A
-Chromosome3	78284878	G	0	*	*	6	,,,,,a	JJJJJJ	3	,,t	JJJ	1	t	J	1	,	<
-Chromosome3	78373098	C	2	..	JJ	3	.G.	JJJ	0	*	*	4	,G..	sJJJ	0	*	*
-Chromosome3	78373186	C	2	..	JJ	3	.A.	JFJ	0	*	*	4	,A..	sFss	0	*	*
-Chromosome3	78373193	C	2	..	JJ	3	.A.	FFJ	0	*	*	4	,A..	sFse	0	*	*
-Chromosome3	78718467	C	0	*	*	0	*	*	2	.-2AT.-2AT	JJ	1	.	j	1	.-2AT	J
-Chromosome3	78720420	T	0	*	*	1	^M.	A	1	C	J	0	*	*	2	C^M.	JA
-Chromosome3	78720518	T	0	*	*	2	C,	sJ	3	,,,	JFJ	0	*	*	4	C,,,	sAFJ
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-Chromosome3	78720564	C	0	*	*	2	T,	sJ	3	,,,	JJJ	0	*	*	4	T,,,	oJJF
-Chromosome3	78720573	G	0	*	*	2	,a	JJ	3	a,,	JJJ	0	*	*	4	,a,,	AJJJ
-Chromosome3	78720588	C	0	*	*	2	,t	JJ	3	ttt	JFJ	0	*	*	4	tt,t	JJFF
-Chromosome3	78720609	C	0	*	*	2	t,	JJ	3	t,,	JAJ	0	*	*	4	,,t,	FJJJ
-Chromosome3	78807172	A	1	,-1g	J	0	*	*	1	.	o	1	,-1g	J	0	*	*
-Chromosome3	79041675	G	1	a	J	1	,	J	0	*	*	2	a,	JJ	0	*	*
-Chromosome3	79069677	A	0	*	*	0	*	*	3	.G.	JJJ	1	G	J	2	TG	JJ
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-Chromosome3	79093924	T	0	*	*	0	*	*	1	.-5ACACA	J	1	.	J	1	.-5ACACA	o
-Chromosome3	79146899	G	0	*	*	1	.-1C	J	2	.A	7s	1	.	F	0	*	*
-Chromosome3	79146907	A	0	*	*	1	C	J	2	.C	Js	1	.	J	0	*	*
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-Chromosome3	79146935	C	0	*	*	1	.	J	2	.T	Fs	2	.G	JF	0	*	*
-Chromosome3	79146960	T	0	*	*	1	C	s	2	C,	s<	2	.,	sJ	0	*	*
-Chromosome3	79146991	C	0	*	*	1	G	o	2	G,	oJ	2	.,	sJ	0	*	*
-Chromosome3	79157236	G	1	.-3TAC	J	0	*	*	0	*	*	1	.-3TAC	s	1	.-3TAC	J
-Chromosome3	79489310	G	0	*	*	1	.	A	1	.-1A	J	1	.-1A	J	0	*	*
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-Chromosome3	79563980	G	0	*	*	1	.	J	2	.T	FA	0	*	*	1	T	J
-Chromosome3	79564034	G	0	*	*	1	.	F	2	.A	JF	0	*	*	1	A	J
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-Chromosome3	79731421	A	0	*	*	1	t	J	2	t,	JJ	1	,	J	0	*	*
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-Chromosome3	79733868	C	1	,	J	0	*	*	1	,-2tt	A	0	*	*	1	,-1t	J
-Chromosome3	80018020	C	1	.-4AAAA	s	0	*	*	2	.-3AAA.-3AAA	FJ	1	.-2AA	s	1	*	<
-Chromosome3	80142037	A	0	*	*	2	g,	JJ	1	,	J	0	*	*	1	g	J
-Chromosome3	80199517	G	1	C	J	0	*	*	0	*	*	1	A	J	2	.A	JJ
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-Chromosome3	80199736	C	1	a	J	0	*	*	0	*	*	1	t	J	3	,tt	JJJ
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-Chromosome3	80240801	A	1	.	s	0	*	*	2	tt	JJ	2	.G	os	0	*	*
-Chromosome3	80240806	C	1	G	o	0	*	*	2	aa	JJ	2	.A	os	0	*	*
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-Chromosome3	80452671	G	0	*	*	1	.-4GCAT	9	1	.	J	0	*	*	1	.-4GCAT	9
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-Chromosome3	80533967	T	0	*	*	0	*	*	2	.C	sJ	1	.	s	1	C	J
-Chromosome3	80533972	G	0	*	*	0	*	*	2	.A	sJ	1	.	s	1	A	J
-Chromosome3	80534060	T	0	*	*	0	*	*	3	,.G	JoF	2	.G	sJ	1	.	s
-Chromosome3	80534084	T	0	*	*	0	*	*	4	,.C,	AsJj	2	,C	AJ	1	.	s
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-Chromosome3	80534140	T	0	*	*	0	*	*	3	A,,	FJs	1	A	J	1	,	J
-Chromosome3	80599126	G	1	a	J	1	,	J	0	*	*	2	,a	FA	0	*	*
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-Chromosome3	80918577	A	6	TT..T.	<JF<JJ	4	.T.T	JJJJ	1	T	J	4	TT..	JJJJ	5	T....	JJJJJ
-Chromosome3	80918596	A	5	..G.G	JJ7JJ	4	..G.	FJJJ	1	.	J	4	..G.	JJJJ	5	.GGG.	JJJJJ
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-Chromosome3	80920096	A	11	,,,,,t,tt,,	<FJFJJJJJJF	4	,,,t	JJJJ	2	t,	JJ	3	,tt	JJJ	7	tt,,,,,	JFJJJJJ
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-Chromosome3	80940979	A	1	.	J	0	*	*	0	*	*	2	.-1T.-1T	ss	2	.-1T.	jR
-Chromosome3	80965642	T	2	C.	JJ	2	GC	<J	1	C	J	0	*	*	0	*	*
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-Chromosome3	81076154	C	1	.-1A	J	0	*	*	0	*	*	2	.-1A.-1A	JF	1	.-1A	J
-Chromosome3	81076188	A	1	.	s	0	*	*	0	*	*	2	.C	so	1	C	o
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-Chromosome3	81076218	C	1	t	J	0	*	*	0	*	*	2	.t	jJ	1	,	J
-Chromosome3	81076291	T	1	c	J	0	*	*	0	*	*	2	,c	JJ	1	,	J
-Chromosome3	81076301	C	1	,$	I	0	*	*	0	*	*	2	,-2ag,-2ag	II	1	,-2ag	I
-Chromosome3	81150642	G	4	,,+1a,+1a,+1a	JJJJ	9	,$,,,,,+1a,+1a,+1a,+1a	AAJJJFJE7	7	,+1a,+1a,+1a,+1a,+1a,+1a,+1a	FJJAJJF	20	,$,,,,,,+1a,+1a,+1a,+1a,+1a,+2aa,+1a,+1a,+1a,+1a,+1a,+1a,+1a,+1a	AFJJJJJJJJJAJJJJJJJJ	6	,+1a,+1a,+1a,,,+1a	JJJJJF
-Chromosome3	81150764	C	0	*	*	3	,+1a,+1a,+2aa	JJJ	2	,,+1a	FF	0	*	*	2	,+1a,+1a	JJ
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-Chromosome3	81175422	A	0	*	*	0	*	*	1	G	F	1	.	J	2	.G	JF
-Chromosome3	81175442	G	0	*	*	0	*	*	1	.	F	1	A	F	2	.A	FJ
-Chromosome3	81263705	A	0	*	*	2	..	je	0	*	*	3	.,g	RJJ	1	G	j
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-Chromosome3	81268217	A	9	,ttt,tt,t	JJJJJJJFJ	1	.	s	3	ttt	JJA	2	,t	<J	10	,tt,tttt,t	FJFJJJJFJJ
-Chromosome3	81467459	T	2	.A	JJ	0	*	*	0	*	*	2	A.	JJ	2	A.	JJ
-Chromosome3	81467530	C	2	..	JJ	0	*	*	0	*	*	2	.T	JJ	2	.T	JJ
-Chromosome3	81625239	G	0	*	*	0	*	*	2	a,	JJ	1	a	J	1	,	7
-Chromosome3	81674493	G	1	A	J	0	*	*	2	,A	os	2	..	FJ	0	*	*
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-Chromosome3	81674560	G	1	A	F	0	*	*	2	,A	ss	1	.	J	0	*	*
-Chromosome3	81731518	T	1	c	J	2	c,	JJ	2	c,	AJ	0	*	*	3	,,,	FJJ
-Chromosome3	81796758	G	1	,	A	0	*	*	2	,a	JJ	0	*	*	1	a	J
-Chromosome3	81796787	G	1	,	J	0	*	*	2	,a	JJ	0	*	*	1	a	J
-Chromosome3	81955183	A	2	g,	FJ	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome3	82102078	T	0	*	*	0	*	*	1	.	F	1	.-4CCAG	s	1	.-4CCAG	J
-Chromosome3	82103833	G	0	*	*	0	*	*	1	.	o	2	A.	Zs	1	A	s
-Chromosome3	82103834	T	0	*	*	0	*	*	1	.	s	2	A.	Zs	1	A	s
-Chromosome3	82103843	C	0	*	*	0	*	*	2	,a	JJ	1	,	J	1	A	s
-Chromosome3	82240421	T	1	.-4CCCC	F	1	,-4cccc	J	0	*	*	1	.	V	0	*	*
-Chromosome3	82310206	C	1	,	J	0	*	*	2	g,	JF	0	*	*	3	g,,	JJJ
-Chromosome3	82420992	G	0	*	*	2	,,	JJ	3	,a,	JJA	0	*	*	2	a.	JJ
-Chromosome3	82435637	T	0	*	*	1	.	J	0	*	*	2	C.	FJ	1	C	J
-Chromosome3	82435776	G	0	*	*	1	,	J	0	*	*	2	a,	JJ	1	a	F
-Chromosome3	82488900	C	3	..A	JAJ	1	A	F	0	*	*	0	*	*	1	.	F
-Chromosome3	82488950	C	3	T..	J<A	1	.	J	0	*	*	0	*	*	1	T	F
-Chromosome3	82488982	T	3	..C	JJJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome3	82488992	C	3	T..	J<J	1	.	F	0	*	*	0	*	*	1	T	A
-Chromosome3	82489064	C	3	,t,	JJJ	1	,	J	0	*	*	0	*	*	1	t	J
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-Chromosome3	82489178	A	3	,$g,$	>J>	1	,$	>	0	*	*	0	*	*	1	g	A
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-Chromosome3	82895275	A	2	..	JJ	0	*	*	4	.C.C	JJJJ	1	C	s	0	*	*
-Chromosome3	82895281	C	2	GG	JJ	0	*	*	4	G.G.	JJJJ	1	.	s	0	*	*
-Chromosome3	82895284	G	2	.-2CA.-2CA	JJ	0	*	*	4	.-2CA..-2CA.-2CA	JJJJ	1	.	s	0	*	*
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-Chromosome3	82895324	T	2	.+3GAA.+3GAA	JJ	0	*	*	3	.-3GAA.+3GAA.	Js<	1	.-3GAA	s	0	*	*
-Chromosome3	82895349	A	2	GG	sj	0	*	*	4	G.G.	oVsL	1	.	s	0	*	*
-Chromosome3	82895354	A	2	CC	so	0	*	*	4	C.Cc	eos7	1	.	o	0	*	*
-Chromosome3	82895372	C	2	,,	F7	0	*	*	4	.,g,	sFFJ	1	g	J	0	*	*
-Chromosome3	82895380	A	2	,-5agaat,-5agaat	66	0	*	*	4	.,-5agaat,-5agaat,	s56J	1	,	J	0	*	*
-Chromosome3	82895617	A	1	.-2GC	E	0	*	*	0	*	*	2	.-2GC.-2GC	oo	1	.-2GC	G
-Chromosome3	82896097	C	1	,-4ccta	E	1	,-4ccta	@	0	*	*	1	.-4CCTA	H	1	,-4ccta	7
-Chromosome3	82912859	A	1	.-1T	A	0	*	*	0	*	*	1	,	J	1	.-1T	J
-Chromosome3	82912909	A	1	G	o	0	*	*	1	.	i	0	*	*	3	G,,	aAA
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-Chromosome3	82912925	A	1	g	J	0	*	*	1	.	e	0	*	*	3	g,,	JJA
-Chromosome3	82912934	A	1	t	J	0	*	*	1	.	o	0	*	*	3	t,,	7FA
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-Chromosome3	82912950	C	1	a	J	0	*	*	1	.	s	0	*	*	3	a,,	<JJ
-Chromosome3	82912969	C	1	g	J	0	*	*	1	.	s	0	*	*	3	g,,	JFF
-Chromosome3	82912980	T	1	c	J	0	*	*	1	.	s	0	*	*	3	c,,	FJJ
-Chromosome3	82914954	T	1	C	J	1	.	J	0	*	*	0	*	*	2	.-1AC	AJ
-Chromosome3	82942750	T	1	a	J	2	,c	AJ	0	*	*	1	c	A	3	,,c	AAJ
-Chromosome3	83309777	C	0	*	*	0	*	*	1	,	J	2	T,	sA	2	,t	JJ
-Chromosome3	83314649	C	1	G	V	0	*	*	0	*	*	1	.	k	2	A.	FJ
-Chromosome3	83504977	A	1	G	j	0	*	*	0	*	*	3	GTT	fss	2	CC	JJ
-Chromosome3	83698670	T	1	C	s	0	*	*	1	.	a	0	*	*	3	..+5CCCGG.	NJV
-Chromosome3	83698696	G	1	T	s	0	*	*	1	.	s	0	*	*	3	.AA	oJo
-Chromosome3	83741086	G	1	t	J	0	*	*	0	*	*	1	,	J	2	T,	sF
-Chromosome3	83846986	T	0	*	*	1	c	<	3	,,c	AJJ	3	,cc	JJF	2	,c	JF
-Chromosome3	83935165	G	3	..A	J<J	1	A	J	0	*	*	0	*	*	2	A.	J7
-Chromosome3	83935172	A	3	..G	JFJ	1	G	J	0	*	*	0	*	*	2	..	JF
-Chromosome3	83935254	C	3	.AT	<AJ	1	T	J	0	*	*	0	*	*	2	..	J7
-Chromosome3	83935275	C	2	.T	<J	1	T	J	0	*	*	0	*	*	1	.	F
-Chromosome3	84017493	C	0	*	*	1	.	J	4	..TT	FJAJ	5	T.T..	JJJJJ	4	T...	JJJJ
-Chromosome3	84413795	T	0	*	*	1	,-2tg	7	1	,-2tg	;	1	,	A	0	*	*
-Chromosome3	84450912	G	1	t	J	1	,	J	0	*	*	2	t,	JF	0	*	*
-Chromosome3	84481492	G	0	*	*	1	.	J	2	T.	J7	0	*	*	2	.T	JJ
-Chromosome3	84481511	A	0	*	*	1	.	J	2	T.	FJ	0	*	*	3	T..	JJJ
-Chromosome3	84484178	G	1	.	J	2	.A	Je	2	AA	FJ	0	*	*	0	*	*
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-Chromosome3	95578645	C	1	t	J	0	*	*	0	*	*	1	,	J	2	,t	FA
-Chromosome3	95578663	C	1	t	J	0	*	*	0	*	*	1	,	J	2	,t	JJ
-Chromosome3	95636267	C	1	t	J	0	*	*	1	,	J	0	*	*	2	t,	JJ
-Chromosome3	95887937	C	1	g	J	0	*	*	1	.	J	3	,TT	JJJ	0	*	*
-Chromosome3	95887994	C	1	t	J	0	*	*	2	a.	Jj	4	,..,	Jsss	0	*	*
-Chromosome3	95888000	C	1	,	J	0	*	*	2	a.	Js	4	,$AA,	Asss	0	*	*
-Chromosome3	95888017	C	1	,	J	0	*	*	2	g.	As	3	GG,	sss	0	*	*
-Chromosome3	95888020	C	1	,	J	0	*	*	2	,T	Fs	3	..t	sss	0	*	*
-Chromosome3	95888032	A	2	,.	JJ	0	*	*	3	,C.	JsJ	3	..c	sss	0	*	*
-Chromosome3	95888048	A	2	,C	JJ	0	*	*	4	,.C.	JsJ7	3	..,	sss	0	*	*
-Chromosome3	95888049	A	2	g.	JJ	0	*	*	4	gG..	JsJF	3	GGg	sss	0	*	*
-Chromosome3	95900998	T	1	c	F	3	cc,	JJJ	4	.,,,	sAJJ	8	,c,ccccc	FJJJJAJJ	7	,ccc,,,	JJJJJ7J
-Chromosome3	95996791	G	1	a	s	2	TA	JJ	0	*	*	0	*	*	1	.	J
-Chromosome3	96000070	T	1	,	J	0	*	*	1	,-1g	I	0	*	*	1	,-1g	F
-Chromosome3	96092109	C	4	..T.	FAAJ	1	T	J	4	....	<JFs	0	*	*	3	..T	JJJ
-Chromosome3	96210265	C	2	.T	JJ	1	T	J	1	.	J	0	*	*	0	*	*
-Chromosome3	96210407	A	2	ct	JJ	1	t	J	1	c	A	0	*	*	0	*	*
-Chromosome3	96210413	C	2	a,	JJ	1	,	J	1	a	J	0	*	*	0	*	*
-Chromosome3	96225348	A	0	*	*	1	.-1T	<	1	.-1T	J	0	*	*	2	..	JJ
-Chromosome3	96254345	C	1	A	J	2	A.	JJ	0	*	*	1	.	J	0	*	*
-Chromosome3	96254347	A	1	.	J	2	.G	JF	0	*	*	1	G	J	0	*	*
-Chromosome3	96254356	C	1	.	J	2	.G	JF	0	*	*	1	G	J	0	*	*
-Chromosome3	96254374	C	1	.	J	2	.A	JF	0	*	*	1	A	J	0	*	*
-Chromosome3	96254403	A	1	G	J	2	G.	JJ	0	*	*	1	.	J	0	*	*
-Chromosome3	96254424	C	1	.	J	2	.G	JJ	0	*	*	2	GG	J7	0	*	*
-Chromosome3	96254541	G	1	a	J	2	a,	JJ	0	*	*	2	.,	\J	0	*	*
-Chromosome3	96254604	T	1	c	J	2	c,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome3	96254640	C	1	t	J	2	t,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome3	96254642	G	1	a	J	2	a,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome3	96254649	A	1	,	J	2	,g	JJ	0	*	*	1	g	J	0	*	*
-Chromosome3	96359760	C	0	*	*	0	*	*	2	.G	JJ	2	.G	JJ	1	.	J
-Chromosome3	96360083	T	0	*	*	1	g	J	1	,	J	2	g,	7F	0	*	*
-Chromosome3	96360094	C	0	*	*	0	*	*	2	t,	J7	2	t,	<J	1	,	A
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-Chromosome3	96430239	C	0	*	*	1	.	F	1	G	F	0	*	*	3	..G	JFB
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-Chromosome3	96430281	A	0	*	*	1	T	J	1	.	J	0	*	*	3	T..	JAJ
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-Chromosome3	96489382	G	1	.-2TC	J	1	.-2TC	J	1	.	F	1	.-2TC	F	0	*	*
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-Chromosome3	96934743	T	0	*	*	2	G.	JE	2	G.	;s	1	G	J	1	.	J
-Chromosome3	96934756	G	0	*	*	2	A.	Js	1	.	s	1	A	7	0	*	*
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-Chromosome3	97073409	A	0	*	*	2	G.	JJ	0	*	*	1	.	J	1	G	J
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-Chromosome3	102039985	C	2	,a	J<	3	,aa	FFJ	0	*	*	1	a	J	0	*	*
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-Chromosome3	143733323	T	1	,	>	0	*	*	0	*	*	1	,-1g	J	1	,-1g	J
-Chromosome3	143819255	C	6	....TT	7JJJJJ	8	....T.TT	JJJJJJFJ	9	.....T..T	JJJJJJJJJ	8	.TT...T.	JJJJJAFJ	10	T.TTT.....	AJFJJJJ<JJ
-Chromosome3	143819261	C	6	GGG...	7JJJJJ	8	GGGG.G..	JJJJJJJJ	9	GGGGG.GG.	JJJJJJJJJ	8	G..GGG.G	JJJJJJJJ	10	.G...GGGGG	FFJJJJJAJJ
-Chromosome3	143854979	T	0	*	*	1	.	J	3	G..	JFJ	1	G	W	0	*	*
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-Chromosome3	150725011	A	2	C.	JJ	1	C	J	5	..GC.	JJJJJ	3	.C.	JJJ	1	.	J
-Chromosome3	150773290	A	3	,g,	JJF	0	*	*	2	,g	JJ	0	*	*	1	,	J
-Chromosome3	150785567	A	0	*	*	1	.	F	1	G	J	2	T.	sJ	0	*	*
-Chromosome3	150859685	T	7	A.AA...	JJJAAJJ	7	...A...	JJJJJJJ	18	.A...A...A.....A..	JJJJFJsJJJAJJFJJ<F	1	.	A	18	A......AA.......AA	FJ<JJJA7A<JJJJJJFF
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-Chromosome3	151149064	T	0	*	*	1	.	J	0	*	*	1	C	J	1	.-1C	J
-Chromosome3	151346289	G	5	a,aaa	AJJJJ	7	,,a,a,a	JJJAJJJ	4	a,aa	JF<<	5	.aa,a	cJJJF	5	,,,,a	F<JJJ
-Chromosome3	151492866	C	0	*	*	1	.	F	0	*	*	1	.-1A	J	1	.-1A	J
-Chromosome3	151668392	G	3	.A.	JJF	4	..A.	JJJJ	1	.	J	0	*	*	0	*	*
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-Chromosome3	152445326	A	2	g,	JJ	4	.,gg	sJJF	3	,,,	JFJ	3	.,g	RFJ	6	..Gg,,	sskJJJ
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-Chromosome3	154337928	T	0	*	*	0	*	*	2	..	so	3	..A	eks	2	.G	ss
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-Chromosome3	155950791	A	0	*	*	1	.	J	2	.-2CG.-2CG	FJ	1	.-2CG	J	0	*	*
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-Chromosome3	156123384	G	6	aaaaaa	JJ<JJJ	7	aa,,aaa	J<JJ<JA	7	,,a,,,a	JJ<JJJF	3	,aa	JAJ	8	aa,aaaaa	FAJJJJJJ
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-Chromosome3	156681514	T	0	*	*	1	.-19TTTGCACATACTCAATGAC	C	1	.	o	1	.-19TTTGCACATACTCAATGAC	C	0	*	*
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-Chromosome3	157453957	C	0	*	*	2	.a	jJ	3	AA.	sss	0	*	*	1	G	s
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-Chromosome3	157545861	G	0	*	*	0	*	*	2	c,	JJ	1	,	J	2	c,	FJ
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-Chromosome3	157717282	T	1	,-5tttac	5	1	,-5tttac	5	1	,	J	0	*	*	0	*	*
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-Chromosome3	157908047	A	3	..+1T.+1T	J@@	0	*	*	0	*	*	2	.+1T,	FJ	2	.+1T.+1T	<@
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-Chromosome3	169554260	T	2	,,	JJ	0	*	*	1	a	F	0	*	*	3	,,a	JJ<
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-Chromosome3	169775321	A	0	*	*	1	.	J	1	.-5CCCCT	F	0	*	*	1	.-5CCCCT	A
-Chromosome3	169793497	A	3	gg,	JJJ	1	,	J	2	,g	JJ	1	g	J	3	t,,	7JJ
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-Chromosome3	235319646	C	1	.-7CTTCTGT	J	0	*	*	1	.-7CTTCTGT	I	0	*	*	1	.-7CTTCTGT	5
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-Chromosome3	238083906	G	2	,-2ca,	JJ	1	,-2ca	J	1	,-2ca	A	1	,	J	2	,-2ca,-2ca	JJ
-Chromosome3	238094389	G	1	,-3gct	B	1	.-6GCTGCT	[	1	^],	B	0	*	*	0	*	*
-Chromosome3	238094555	A	0	*	*	3	..T	JJJ	1	.	J	2	TT	JJ	0	*	*
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-Chromosome3	238166011	A	1	.	F	1	C	F	3	C.C	JFF	4	CC..	FFFF	2	.C	FF
-Chromosome3	238166061	A	1	.	F	1	.-3GTT	I	3	...-2GT	`JJ	4	.-1G.-1G..	<7FJ	1	.-2GT	J
-Chromosome3	238166100	C	1	.	s	1	A	s	3	A.A	sse	4	AA..	eosJ	2	.A	oo
-Chromosome3	238166109	C	1	.	o	1	A	j	3	..A	sso	4	AA..	9osJ	2	.A	ss
-Chromosome3	238166115	A	1	.	M	1	G	s	3	..G	ssj	4	GG..	\ssF	2	.G	js
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-Chromosome3	238322664	T	1	,-6ccgccg	F	0	*	*	1	.-3CCG	`	0	*	*	1	.	F
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-Chromosome3	238384583	T	0	*	*	2	C,	s<	1	.	s	1	C	s	0	*	*
-Chromosome3	238434878	C	0	*	*	2	.-4ATAT.-2AT	JJ	1	.-4ATAT	F	3	..-4ATAT.	sJJ	5	,....	sJJFJ
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-Chromosome3	238442812	T	12	Ggg,gggggggg	sJJFJFJJJFJJ	4	g,gg	JJJJ	10	ggggg,gggg	JJAJJJJJJJ	2	gg	JJ	10	ggg,gggggg	JJJFJJJJJJ
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-Chromosome3	239655471	G	0	*	*	1	,	J	4	a,,.	BJJs	0	*	*	1	a	J
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-Chromosome3	255512698	T	2	,,	JA	1	c	J	2	,c	JJ	0	*	*	0	*	*
-Chromosome3	255512758	A	2	,g	JJ	0	*	*	1	g	J	0	*	*	1	,	J
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-Chromosome3	255805376	C	1	,	J	0	*	*	0	*	*	1	t	J	2	,t	JJ
-Chromosome3	255855626	T	2	CC	j7	1	.	e	0	*	*	2	.C	Js	0	*	*
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-Chromosome3	256118592	T	1	.-5CCACA	J	0	*	*	1	.-5CCACA	<	0	*	*	1	.-5CCACA	F
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-Chromosome3	256155199	G	11	,,,,,,,,,,,	JJJJJJJJJJJ	11	a,,,,,,a,,,	JJJJJJJJJFJ	15	t,,,,,,,,,,,,,,	JJFJJJJJJJJJJJJ	15	,,,,,,,,,,a,,,,	AFJJJJJJJJFJJJJ	16	,,,,,,,,,a,,,,,,	JJJJJJJJJJJJJJJJ
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-Chromosome3	256246181	G	2	a,	JJ	1	a	J	0	*	*	0	*	*	2	,,	FJ
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-Chromosome3	256539802	T	1	,-1g	H	0	*	*	0	*	*	1	,-1g	H	1	,-1g	H
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-Chromosome3	341345500	G	0	*	*	1	A	s	0	*	*	2	TT	JJ	3	TTa	SSJ
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-Chromosome3	341346059	G	2	.+1C,+1c	99	0	*	*	0	*	*	2	.+1C,+1c	98	6	.+1C.+1C.+1C,+1c,+1c,+1c	999999
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-Chromosome3	345423805	T	1	,-2tg	<	0	*	*	1	,-2tg	<	0	*	*	1	,-2tg	<
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-Chromosome3	346452403	A	2	.-1T.-1T	JJ	1	.-1T	J	1	.-1T	J	0	*	*	0	*	*
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-Chromosome3	346550905	G	2	,-8cagagaat,	JJ	1	,-8cagagaat	J	0	*	*	1	,-8cagagaat	J	1	,-8cagagaat	;
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-Chromosome3	346905001	C	2	,T	Js	5	.TTTT	sssss	4	TTT.	Vose	20	T.TT.TT..TT..T.tttTT	ssssVss``sssosjJsJss	3	T.,	ess
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-Chromosome3	353013281	G	1	a	J	0	*	*	2	,,	JF	0	*	*	3	a,,	7JJ
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-Chromosome3	353026733	A	0	*	*	2	gg	JF	3	g,,	FJJ	2	,,	JJ	2	,g	JJ
-Chromosome3	353104702	G	5	..TT.	77JJF	6	.T.T..	FJJ7JJ	6	...T..	JJJJsJ	6	......	FJJJJs	6	..T.T.	JAJJJJ
-Chromosome3	353104794	G	7	.,,,,,,	sFJJJJJ	6	..,a,,	WsJJAF	7	.T,c,,,	ssJJJJF	7	..,a,,,	ssAJAJJ	7	.,-1c,,,,,	sJJ7J7J
-Chromosome3	353105915	G	0	*	*	1	.	s	2	.A	oo	1	A	k	0	*	*
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-Chromosome3	353105985	G	0	*	*	1	.	s	2	.A	os	1	A	`	0	*	*
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-Chromosome3	353435959	A	5	GGGG.	JJJJ7	1	G	J	7	GG.GG..	JJFJJJA	7	.G...G.	JJJFJJJ	4	G...	JJJJ
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-Chromosome3	353526253	T	0	*	*	1	A	J	1	.	F	0	*	*	3	..A	FAJ
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-Chromosome3	353855791	G	2	t,	Jo	0	*	*	2	,t	F7	0	*	*	1	,	F
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-Chromosome3	353928106	T	0	*	*	0	*	*	2	,,	JJ	1	C	Z	5	,cccc	FJJJF
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-Chromosome3	355923695	G	1	.-7TTTCAAC	J	1	,-7tttcaac	J	0	*	*	1	.-7TTTCAAC	<	0	*	*
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-Chromosome3	360175858	A	1	,	J	1	.-8GTGATAGT	6	1	.-8GTGATAGT	6	0	*	*	1	.-8GTGATAGT	6
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-Chromosome3	360249603	C	34	,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,	JJAJJJJJJJJAJFJJJJJJJJJJJJ<JAJJJAJ	32	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJFJJJAJJJJAJJJ<JJJAJJAJJJJF	33	,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,	FJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJ<	23	,,,,,,,,t,,,,,,,,,,,,,,	JJJJJFFJJJJJJJJAJJAJJJJ	58	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,t,,,,,,,,,,,,t,,,,,,,,,,	JA7JJJJJFFJJJJJJFJJJJJAJFJJFJJJJJJJJJAFJJJJJJJJFJJJJJJJJJF
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-Chromosome3	365368538	A	2	c,	JJ	1	,	F	1	G	H	0	*	*	0	*	*
-Chromosome3	365472326	T	1	,-1g	=	0	*	*	0	*	*	1	,-1g	=	1	,-1g	=
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-Chromosome3	372196116	C	4	t,t,	JJJJ	1	T	s	0	*	*	0	*	*	1	.	W
-Chromosome3	372197118	C	1	.-1G	J	0	*	*	2	.-1G.	JJ	0	*	*	1	.	J
-Chromosome3	372197189	C	1	A	J	1	g	J	2	AG	JJ	0	*	*	1	.	J
-Chromosome3	372245474	C	2	.A	JJ	0	*	*	1	A	<	2	..	ss	0	*	*
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-Chromosome3	372299528	C	0	*	*	2	,-10atgcgggtct,	8F	0	*	*	1	,-10atgcgggtct	8	1	,	F
-Chromosome3	372420013	T	0	*	*	2	,a	JA	2	a,	JJ	0	*	*	2	,,	JJ
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-Chromosome3	372693035	C	1	.	J	0	*	*	0	*	*	2	TT	J7	3	.TT	JJs
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-Chromosome3	374367972	A	3	gg,	JJF	0	*	*	1	,	J	0	*	*	1	g	F
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-Chromosome3	374476468	T	2	,,	JA	0	*	*	0	*	*	1	g	J	3	g,g	JFJ
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-Chromosome3	374901285	A	1	,-8tccaccat	9	1	,-8tccaccat	9	0	*	*	1	.-8TCCACCAT	Q	0	*	*
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-Chromosome3	374910460	T	2	.-3TAC.-3TAC	77	0	*	*	3	.-3TAC..	7J<	1	.-3TAC	7	0	*	*
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-Chromosome3	375957782	C	10	T.........	AJJJJJJJJJ	6	.....T	AJJJJJ	13	T..........T.	JJF7JJJJJJJJJ	5	...T.	JFJFA	7	......T	JFAJJJJ
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-Chromosome3	376553155	T	1	C	J	0	*	*	0	*	*	1	.	s	3	C,,	sJJ
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-Chromosome3	377968837	T	2	C.	JJ	2	CC	Jo	0	*	*	1	.	F	0	*	*
-Chromosome3	377968862	A	2	G.	JJ	2	GG	es	0	*	*	1	.	F	0	*	*
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-Chromosome3	406153856	A	1	,	J	0	*	*	2	Cc	JJ	2	.c	eJ	0	*	*
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-Chromosome3	406291251	A	0	*	*	0	*	*	1	.-4GATC	:	1	.-4GATC	:	1	.-4GATC	:
-Chromosome3	406291365	A	0	*	*	0	*	*	1	,	J	1	,-14gtacactgtcatag	;	1	,-14gtacactgtcatag	;
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-Chromosome3	406367168	A	0	*	*	1	.-2CC	p	0	*	*	1	.	J	2	.-2CC.-2CC	gU
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-Chromosome3	406999006	G	0	*	*	2	a,	JJ	2	a.	JF	1	a	J	1	,	A
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-Chromosome4	15930131	C	0	*	*	1	,	J	1	t	J	0	*	*	2	,t	JJ
-Chromosome4	15930134	G	0	*	*	1	,	J	1	t	<	0	*	*	2	,t	JJ
-Chromosome4	15965368	T	30	.CC...........................	FJJJJJJJJJJJJJJJJJJJJJJJJJJJJF	54	...........................C..........................	JJJJJJJJJJJJJJJJFJJJJJJJJJJJAJJJJJJJAJJJFJJJJJJJJJJJJJ	91	..........................C.............C......................C..C........................	JJJJJJJFJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJFJJJJJF<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJ7JJJJAJJJJJ	80	........................C.......................................................	JJJJJJJFJJJFFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ>>	107	..............................................................CC...........................................	JJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJ7JJJJJJJJJJJFJJJJJJJJJJAJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ
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-Chromosome4	17934573	T	3	GG.	JoF	2	G.	Js	1	G	F	0	*	*	0	*	*
-Chromosome4	17969885	G	0	*	*	1	.	J	1	C	J	1	a	s	2	.C	JJ
-Chromosome4	18048075	T	0	*	*	1	.	J	0	*	*	2	C.	JA	1	C	J
-Chromosome4	18180074	A	1	c	F	1	,	J	0	*	*	0	*	*	2	t,	JJ
-Chromosome4	18245463	T	2	C^L.	JA	1	C	F	0	*	*	0	*	*	3	CC^L.	JJA
-Chromosome4	18245520	A	2	G.	JJ	1	.	J	0	*	*	0	*	*	3	GG.	JJJ
-Chromosome4	18245781	A	2	g,	JJ	1	,	F	0	*	*	0	*	*	3	,gg	JFJ
-Chromosome4	18246815	C	0	*	*	1	,	J	0	*	*	3	T..	sss	2	TT	os
-Chromosome4	18261318	G	0	*	*	2	.A	FJ	4	A...	<FJJ	0	*	*	1	.	J
-Chromosome4	18261568	A	0	*	*	3	ttt	AAJ	4	tt,t	7<JF	0	*	*	3	ccc	JJA
-Chromosome4	18393169	G	1	,	J	2	,T	Js	0	*	*	0	*	*	1	A	j
-Chromosome4	18454703	C	2	.A	JJ	0	*	*	2	AA	FF	0	*	*	1	.	o
-Chromosome4	18454750	G	2	.A	Js	0	*	*	2	AA	JJ	0	*	*	1	.	s
-Chromosome4	18548741	T	0	*	*	0	*	*	2	.C	JA	2	C.	JF	1	.	<
-Chromosome4	18548786	C	0	*	*	0	*	*	2	TT	sW	2	T.	se	1	.	o
-Chromosome4	18548880	C	0	*	*	0	*	*	2	..	se	2	.T	sV	1	T	o
-Chromosome4	18552344	T	6	CCCC.C	AJJJJJ	1	.	J	0	*	*	0	*	*	1	C	J
-Chromosome4	18582402	T	0	*	*	0	*	*	1	.-1C	F	1	.	\	2	.-1C.-1C	JJ
-Chromosome4	18582433	A	0	*	*	0	*	*	1	.-1T	J	1	,-1t	J	2	.-1T.-1T	JJ
-Chromosome4	18635796	C	3	...	JJJ	9	..T..T...	JJFJFJJJJ	13	....T......T.	JJJJFJJJJJsFJ	10	...TT.....	JJJJJJJsJJ	11	..T.....T..	JFJJJAJ`JJJ
-Chromosome4	18635820	G	3	...	sRs	9	..A......	sMssjssss	13	....A......A.	sssososssoses	10	...A......	sossssssoo	11	........A..	osssssoRsso
-Chromosome4	18635826	G	3	.AA	sfs	9	.A.......	sVoossoss	13	A.AA........A	ooskssossssss	10	......AA..	s`sssssVss	11	......AA...	sssssookoss
-Chromosome4	18635949	A	3	,gg	FFF	9	,g,,,,,,,	FFFFFFFFF	12	,,gg,,,,,,g,	FFFFFFFFFAFF	8	,g,,,g,,	FFFFFFFF	10	,,g,,,,,,,	FFFFFFFFFF
-Chromosome4	18649124	C	0	*	*	3	T..	JFJ	3	T..	7JJ	0	*	*	2	.T	JJ
-Chromosome4	18649129	C	0	*	*	3	.T.	JFJ	3	...	FJJ	0	*	*	2	T.	JJ
-Chromosome4	18649212	C	0	*	*	3	.A.	JJF	3	...	<JJ	0	*	*	2	A.	FJ
-Chromosome4	18649503	C	0	*	*	3	,ta	J<J	2	,,	JJ	0	*	*	2	t,	<J
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-Chromosome4	18649571	A	0	*	*	3	c,,	?<F	2	c,	GJ	0	*	*	2	,c	FG
-Chromosome4	18651644	G	3	.A.	JJJ	1	A	J	2	A.	JJ	0	*	*	4	....	JJJJ
-Chromosome4	18656703	A	0	*	*	2	g,	FJ	2	c.	FJ	1	.	s	0	*	*
-Chromosome4	18929638	G	0	*	*	2	,a	JJ	1	,	J	1	a	J	0	*	*
-Chromosome4	18929640	A	0	*	*	2	,g	JJ	1	,	J	1	g	J	0	*	*
-Chromosome4	18943746	G	0	*	*	1	T	J	2	.T	JJ	1	.	J	0	*	*
-Chromosome4	18943748	T	0	*	*	1	C	J	2	.C	JJ	1	.	J	0	*	*
-Chromosome4	18943836	A	0	*	*	1	.	J	2	G.	JJ	2	G.	JJ	0	*	*
-Chromosome4	18943850	C	0	*	*	1	.	J	2	A.	JJ	2	A.	JJ	0	*	*
-Chromosome4	18943864	G	0	*	*	1	.	J	2	A.	JJ	2	A.	JJ	0	*	*
-Chromosome4	18947149	A	1	g	A	1	.	J	0	*	*	2	.g	jA	0	*	*
-Chromosome4	18947151	T	1	c	J	1	.	J	0	*	*	2	.c	aJ	0	*	*
-Chromosome4	19166974	A	1	.-3GAT	;	0	*	*	1	.	J	0	*	*	1	.-3GAT	;
-Chromosome4	19509852	T	0	*	*	2	..	ss	1	.-1G	J	1	,-1g	J	0	*	*
-Chromosome4	19690327	A	0	*	*	1	C	J	2	GC	JJ	0	*	*	2	.G	JJ
-Chromosome4	19690343	C	0	*	*	1	.	F	2	G.	<J	0	*	*	2	.G	JJ
-Chromosome4	19690358	A	1	g	<	1	.	J	2	G.	aJ	0	*	*	2	.G	sj
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-Chromosome4	19724082	A	1	,-2ag	;	0	*	*	0	*	*	2	,-2ag,-2ag	;;	1	,-2ag	;
-Chromosome4	19738728	G	0	*	*	1	A	A	0	*	*	2	A.	Js	1	,	J
-Chromosome4	19738730	C	0	*	*	1	G	<	0	*	*	2	G.	Js	1	,	J
-Chromosome4	19738731	A	0	*	*	1	T	<	0	*	*	2	T.	Js	1	,	J
-Chromosome4	19738738	T	0	*	*	1	.	J	0	*	*	2	.G	J`	1	g	J
-Chromosome4	19794481	G	11	...T,T..A.^T.	ssJJoFFfFJA	14	..T.,.,.AA,,,.	jAJeFsFJ>F7<AA	13	...Tt.AAAA.a.	sooFFJs<6sJAA	32	....,t,,AAA..AA.AAA..Aa,.Aa....^].	RssJeFoAA>UJjsJJsojssAAJ`jFJFnAA	8	..,,,,.A	<AAfFssF
-Chromosome4	19794500	A	13	...G,.....G..	AsJJjJWeJJJJo	19	..G.,g.,...g,g,.,..	AAJRfJsAJsoFA7JFVsJ	18	...Gg.....G,....G.	jooJ<JsFAsJJ<JFsss	40	.G...,gg,,,..............,,..,.....G.G.G	6AssJsJ<os9o```ssJJojosoA<seoVJJeJAVssJF	8	.,,,..G.	JRVssJsV
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-Chromosome4	19794534	A	18	..G,c.....,G...,.c	oAJoA<AWF:AJFss<o7	21	..G.,,.g...g,.,...,.G	AF`>sJsAJsCAJJosJJFnJ	16	..gG...G,....,.G	soFF`JosJJAsssJJ	46	G...,gg,,g..............,,..,...g.G.GG.G,g,.GG	As`JsAFes:eeHs\j7JokssooF`oso7F7Joo<sJsosA<oJk	9	,,,,..G..	jWJssFsVs
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-Chromosome4	31936052	T	0	*	*	0	*	*	2	C.	ss	2	.C	Vs	1	C	a
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-Chromosome4	32033503	A	1	.	J	0	*	*	2	.T	JJ	0	*	*	2	T.	JJ
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-Chromosome4	32033599	A	1	,	F	0	*	*	2	,g	JJ	0	*	*	1	g	F
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-Chromosome4	32988810	T	2	,,	JJ	0	*	*	0	*	*	2	,c	FJ	1	c	J
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-Chromosome4	66394049	G	1	.	J	1	T	s	0	*	*	0	*	*	3	T.T	JJF
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-Chromosome4	66394134	A	1	.	J	1	C	V	0	*	*	0	*	*	3	G.G	JJJ
-Chromosome4	66662106	T	2	.C	FJ	1	.	J	0	*	*	1	.-1C	s	0	*	*
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-Chromosome4	66663972	T	0	*	*	2	,.	Js	4	..CC	AJJJ	1	C	s	0	*	*
-Chromosome4	66664003	G	0	*	*	1	A	o	3	,,a	F77	1	.	s	0	*	*
-Chromosome4	66664017	C	0	*	*	1	A	s	4	,,aa	JFAJ	1	.	s	0	*	*
-Chromosome4	66664027	A	0	*	*	1	.-1T	f	3	,-1t,-1t,-1t	JJJ	1	.-1T	s	0	*	*
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-Chromosome4	66664070	C	0	*	*	1	t	J	4	,,tt	JJ7J	1	.	o	0	*	*
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-Chromosome4	66734981	C	1	.	o	3	.$t,	EJJ	0	*	*	3	t..	Jso	0	*	*
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-Chromosome4	66870740	G	0	*	*	0	*	*	1	A	s	1	.	s	2	A.	os
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-Chromosome4	66870781	A	0	*	*	0	*	*	1	G	s	1	.	s	2	G.	ss
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-Chromosome4	66907963	G	0	*	*	3	A..	JJJ	0	*	*	1	.	A	1	A	J
-Chromosome4	66908028	C	0	*	*	3	T..	Jsk	0	*	*	1	.	s	1	T	s
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-Chromosome4	71511971	A	3	G.G	JJJ	0	*	*	3	..G	JJF	2	GG	JJ	3	.GG	JJJ
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-Chromosome4	71889078	C	0	*	*	0	*	*	1	.	s	6	.G....	oojsss	6	T.....	ssosos
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-Chromosome4	72975841	G	0	*	*	0	*	*	3	..a	joJ	5	A,,,.	oJJJs	2	,,	JJ
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-Chromosome4	73139150	C	1	.+1A	J	0	*	*	2	.+1A.+1A	JJ	2	.+1A.+1A	AJ	0	*	*
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-Chromosome4	73218937	C	3	,-2aa,,	5JJ	0	*	*	0	*	*	1	,-2aa	5	1	,	J
-Chromosome4	73379391	C	3	,-1a,,	JJF	0	*	*	1	,	J	0	*	*	1	*	D
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-Chromosome4	73760159	T	0	*	*	0	*	*	4	.A..	JJJs	1	A	J	1	.	J
-Chromosome4	73771024	A	0	*	*	2	.-1T.-1T	JJ	1	.-1T	J	1	.-1T	J	0	*	*
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-Chromosome4	74216066	G	5	.T...	FFsfJ	0	*	*	4	..C.	JsJJ	1	.	s	1	T	7
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-Chromosome4	74216196	T	5	,,ccc	JJJJJ	0	*	*	3	c,,	AJF	0	*	*	1	c	J
-Chromosome4	74216197	C	5	,,ttt	JJAJJ	0	*	*	3	t,,	AJF	0	*	*	1	t	<
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-Chromosome4	75124366	C	3	,,,	JJJ	0	*	*	1	a	J	0	*	*	2	,a	JJ
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-Chromosome4	75219758	C	0	*	*	2	.-7ATCAGGA.	5J	1	.	>	1	.-7ATCAGGA	5	0	*	*
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-Chromosome4	75220160	C	0	*	*	2	,-5agagg,	JJ	1	,-5agagg	J	0	*	*	1	,-5agagg	<
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-Chromosome4	78218400	G	1	.+2CA	F	0	*	*	2	.+2CA.+2CA	5J	2	.+2CA.+2CA	rJ	0	*	*
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-Chromosome4	78365119	A	1	.	F	1	T	J	3	.TT	fsF	0	*	*	3	.,T	FsJ
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-Chromosome4	78379820	T	1	.-1C	I	4	.-1C.-1C.-1C.-1C	IIII	0	*	*	2	.-1C.-1C	II	5	.-1C.-1C.-1C.-1C.-1C	IIII7
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-Chromosome4	78546477	G	5	a,,,a	JJJJF	0	*	*	0	*	*	3	a,,	JJJ	4	,,,,	FJ<J
-Chromosome4	78546538	T	5	c,,,c	JJJJJ	0	*	*	0	*	*	3	c,,	JFJ	4	,,,,	FJFJ
-Chromosome4	78546572	G	5	a,,,a	JJJFJ	0	*	*	0	*	*	3	a,,	JJJ	4	,,,,	FJJJ
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-Chromosome4	78631111	A	3	.+1T.+1T.+1T	JJJ	3	.+1T.+1T.+1T	JJJ	2	.+1T.+1T	JJ	3	.+1T.+1T.+1T	FJJ	7	.+1T.+1T.+1T.+1T.+1T.+1T.+1T	F9JJJJJ
-Chromosome4	78634267	T	0	*	*	0	*	*	1	c	s	5	,,,c,	`ssss	4	,,,,	jsso
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-Chromosome4	78695339	A	2	,-2at,-2at	<<	1	.-2AT	W	0	*	*	3	,-2at,,	<Js	1	,-2at	<
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-Chromosome4	79151338	A	2	g,	JJ	2	,,	JF	1	g	J	0	*	*	0	*	*
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-Chromosome4	79478677	T	2	ca	FJ	0	*	*	0	*	*	1	,	J	1	a	J
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-Chromosome4	80037412	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.A	JJ
-Chromosome4	80171533	T	10	..cc,cc,,c	ssJJJJFAFJ	6	,,cc,,	JJJAAF	4	cc,,	AJFF	5	.c,cc	sJJJF	15	Ccc,cc,,,c,,c,,	eJJAJJJJ7JJJJFJ
-Chromosome4	80197569	A	1	.-1T	F	0	*	*	1	.-1T	J	0	*	*	1	.-1T	J
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-Chromosome4	83193123	C	1	,	F	0	*	*	0	*	*	1	,-6cttctt	=	3	,-3ctt,,	AJA
-Chromosome4	83337313	G	1	,-14gggattaaatcccc	6	0	*	*	1	,-14gggattaaatcccc	6	0	*	*	1	,-14gggattaaatcccc	6
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-Chromosome4	83774804	C	2	aa	JJ	1	,	J	5	,,a,,	JJJJF	4	.,ga	sJFF	5	,,,a,	AJJ7J
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-Chromosome4	83784299	T	2	A.	JJ	0	*	*	0	*	*	2	A.	A7	1	A	J
-Chromosome4	83795790	T	2	,,	7J	2	,c	JJ	0	*	*	3	c,,	FJJ	2	c,	JJ
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-Chromosome4	115771416	T	3	...	EEE	0	*	*	0	*	*	3	..A	njJ	1	A	J
-Chromosome4	115771514	T	1	,-1c	J	0	*	*	0	*	*	1	,	J	1	,-1c	J
-Chromosome4	115775755	T	1	.-2AA	J	1	.+1A	F	1	.-2AA	J	2	,-2aa.	sJ	2	..-2AA	JJ
-Chromosome4	115827814	C	3	.+6TATAGG..	AJJ	0	*	*	0	*	*	5	....+6TATAGG.	JJJJJ	2	..	JJ
-Chromosome4	115827848	T	3	A..	jJJ	0	*	*	0	*	*	5	...A.	JJJjJ	2	..	JJ
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-Chromosome4	115828004	C	2	t,	F<	0	*	*	0	*	*	4	ttt,	JJJF	2	,,	JF
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-Chromosome4	115828031	C	2	t,	JJ	0	*	*	0	*	*	4	,,t,	JFJJ	1	,	J
-Chromosome4	115829674	A	0	*	*	0	*	*	1	.	<	1	G	J	2	.G	JJ
-Chromosome4	115885266	G	2	A.	JJ	3	.AA	JJJ	3	...	JJJ	2	.A	FJ	0	*	*
-Chromosome4	115885332	C	2	T.	JA	3	.TT	Jss	3	...	JJJ	2	.T	JJ	0	*	*
-Chromosome4	115895462	A	2	G.	J7	0	*	*	1	.	<	1	G	J	3	.G.	JJJ
-Chromosome4	116018354	G	2	,+1t,+1t	JJ	1	,+1t	A	1	*	=	2	,+1t,+1t	JJ	0	*	*
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-Chromosome4	116239526	G	1	.	J	1	.-11GATTTTGTTTT	I	0	*	*	1	.-11GATTTTGTTTT	I	0	*	*
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-Chromosome4	116573180	C	2	,t	JJ	0	*	*	1	t	J	0	*	*	1	,	J
-Chromosome4	116603618	C	1	.-1T	I	1	.-1T	F	1	.-1T	I	0	*	*	0	*	*
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-Chromosome4	116847514	C	0	*	*	0	*	*	1	A	s	1	,	J	2	t,	JJ
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-Chromosome4	117047539	C	3	g,,	JJF	0	*	*	2	,,	JF	0	*	*	2	t,	JJ
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-Chromosome4	117739403	C	1	.	J	2	.-7CGCCGAG.	^J	0	*	*	0	*	*	1	.-7CGCCGAG	7
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-Chromosome4	117858434	G	1	,	J	2	,a	JJ	0	*	*	0	*	*	2	c.	7s
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-Chromosome4	120513867	T	2	..	JJ	2	.C	JJ	7	CC.....	JJJJJFA	4	C.CC	JJJJ	7	C..CCC.	JAJFJ7J
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-Chromosome4	121301063	C	0	*	*	0	*	*	2	,t	Js	1	t	A	1	.	s
-Chromosome4	121376305	G	2	c,	JJ	0	*	*	1	a	J	2	,,	JJ	0	*	*
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-Chromosome4	121441089	C	2	T.	GJ	0	*	*	1	.	s	1	T	A	0	*	*
-Chromosome4	121470996	C	1	,-1t	F	1	a	<	2	,,	JJ	0	*	*	0	*	*
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-Chromosome4	121657688	A	1	.-1C	o	0	*	*	1	,-1c	J	1	.-1C	A	0	*	*
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-Chromosome4	121981088	T	2	..	JJ	0	*	*	0	*	*	4	...c	fsjA	1	c	J
-Chromosome4	122062775	C	0	*	*	3	,,,	JJJ	1	t	J	2	.,-3att	VF	0	*	*
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-Chromosome4	122453962	G	0	*	*	0	*	*	2	.T	oo	1	.	s	1	T	j
-Chromosome4	122453983	C	0	*	*	0	*	*	2	T.	ss	2	.T	As	1	.	j
-Chromosome4	122454010	C	0	*	*	0	*	*	2	.-2AG.	oo	1	.-2AG	s	1	.	s
-Chromosome4	122454017	G	0	*	*	0	*	*	2	.C	oj	2	C.	As	1	C	o
-Chromosome4	122454020	A	0	*	*	0	*	*	2	*.	=k	2	.*	<=	1	.	s
-Chromosome4	122454021	A	0	*	*	0	*	*	2	*.	=s	1	*	=	1	.	`
-Chromosome4	122454022	T	0	*	*	0	*	*	2	*A	=o	2	A*	7=	1	A	V
-Chromosome4	122454055	A	0	*	*	0	*	*	2	T,	oJ	1	.	s	1	T	j
-Chromosome4	122454070	G	0	*	*	0	*	*	2	,-1t,-1t	JJ	1	.-1T	s	1	,-1t	<
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-Chromosome4	122543447	C	1	.	J	1	T	J	2	.T	Ae	0	*	*	0	*	*
-Chromosome4	122558182	C	1	T	F	0	*	*	2	.T	sJ	1	.	s	0	*	*
-Chromosome4	122658581	C	1	.-1T	F	0	*	*	0	*	*	1	.-1T	J	1	.-1T	s
-Chromosome4	122701953	G	0	*	*	1	A	A	0	*	*	2	..	mJ	2	.A	JF
-Chromosome4	122701959	T	0	*	*	1	.	J	0	*	*	2	G.	oJ	2	.G	JJ
-Chromosome4	122701989	T	0	*	*	1	.	o	0	*	*	2	GG	so	2	.G	s\
-Chromosome4	122702104	G	0	*	*	1	,	<	0	*	*	2	,$t	FF	2	,a	JA
-Chromosome4	122705506	T	0	*	*	1	,	J	2	*c	JA	0	*	*	3	,,a	JJJ
-Chromosome4	122705555	G	0	*	*	1	a	J	2	,,	JJ	0	*	*	3	,t,	JJJ
-Chromosome4	122734956	A	1	.-12TTGCTCCGGTGT	H	0	*	*	0	*	*	1	.-12TTGCTCCGGTGT	H	1	.-12TTGCTCCGGTGT	H
-Chromosome4	122794637	C	0	*	*	0	*	*	1	.	s	1	T	s	2	T.	os
-Chromosome4	122794667	C	0	*	*	0	*	*	1	a	F	1	.+1T	s	2	.+1T.	ss
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-Chromosome4	148419589	C	10	,,,,,a,,,,	JJJJFAFJJF	9	,,,,,a,,,	FJJJJJFJJ	14	,,,,aa,,,,,,,a	JJJJJJFJJFJJJJ	6	,,,,,,	FJJJJJ	9	,,a,,,,,,	JJJJJFJJJ
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-Chromosome4	148735967	A	0	*	*	2	G.	jJ	1	G	s	0	*	*	2	G^I.	sA
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-Chromosome4	148827484	T	0	*	*	0	*	*	1	.	J	2	CA	so	1	C	s
-Chromosome4	148943640	G	1	.-1A	o	1	.-1A	s	0	*	*	1	.-1A	s	0	*	*
-Chromosome4	148970230	G	1	,-1t	J	2	,,-1t	JJ	1	,-1t	J	1	,	J	0	*	*
-Chromosome4	148970549	T	0	*	*	3	.A.	JJJ	2	..	JJ	2	C.	JJ	0	*	*
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-Chromosome4	148970610	T	0	*	*	3	.C.	FJs	2	..	oJ	2	C.	J<	0	*	*
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-Chromosome4	151017580	G	1	.-3GAT	7	4	,,,t	FFJA	1	.	s	0	*	*	0	*	*
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-Chromosome4	153202690	C	2	T.	JJ	1	.	J	3	.T.	JJJ	0	*	*	2	.T	AJ
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-Chromosome4	153594949	C	1	.-3CAT	;	1	.	J	0	*	*	1	.-3CAT	;	0	*	*
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-Chromosome4	154537207	T	2	GG	JJ	1	A	J	1	C	J	5	AGGGG	JJJFJ	3	AGA	JJJ
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-Chromosome4	155713399	T	3	,,+1c,+1c	AJJ	5	,+1c,+1c,+1c,+1c,+1c	J7FFJ	2	,+1c,+1c	JF	5	,,+1c,+1c,+1c,+1c	FJJJJ	2	,+1c,+1c	JF
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-Chromosome4	155806383	G	0	*	*	0	*	*	2	.,	s<	4	.,,a	jJJJ	2	.a	sA
-Chromosome4	156197524	C	1	G	J	0	*	*	2	,G	Js	1	.	A	0	*	*
-Chromosome4	156197526	A	1	G	A	0	*	*	2	,G	Fs	1	.	<	0	*	*
-Chromosome4	156550699	A	3	t,t	FJJ	2	,,	J7	0	*	*	0	*	*	3	ttt	JJF
-Chromosome4	156675234	C	0	*	*	2	.T	JJ	1	.	J	0	*	*	1	T	J
-Chromosome4	156675291	T	0	*	*	2	.C	JJ	1	.	J	0	*	*	1	C	J
-Chromosome4	156675317	T	0	*	*	2	.C	JJ	1	.	k	0	*	*	1	C	J
-Chromosome4	156986089	C	0	*	*	0	*	*	2	..	JJ	2	T.	JJ	1	T	J
-Chromosome4	156986324	C	0	*	*	0	*	*	2	,-1t,-1t	JJ	1	,	<	1	,-1t	J
-Chromosome4	157199568	T	1	C	F	0	*	*	2	C.	JJ	1	.	J	0	*	*
-Chromosome4	157199624	G	1	A	J	0	*	*	2	.A	J<	1	.	F	0	*	*
-Chromosome4	157199626	C	1	T	F	0	*	*	2	TA	JF	1	.	J	0	*	*
-Chromosome4	157286442	T	2	.c	sJ	0	*	*	1	c	<	1	.	s	0	*	*
-Chromosome4	157409252	C	2	..	JJ	0	*	*	3	..T	JJJ	0	*	*	3	..T	JJJ
-Chromosome4	157409264	C	2	..	JF	0	*	*	3	..A	JJJ	0	*	*	3	..A	JJJ
-Chromosome4	157409343	T	2	.A	JJ	0	*	*	3	...	JJA	0	*	*	4	G...	FJJJ
-Chromosome4	157445444	C	1	.-2AT	J	0	*	*	1	.-2AT	J	0	*	*	2	.-2AT.-2AT	JJ
-Chromosome4	157636167	G	3	.-8TTACAAAC..	JJJ	1	.-8TTACAAAC	J	1	.	J	0	*	*	0	*	*
-Chromosome4	157636442	G	3	,,,	JJJ	2	C,	sJ	0	*	*	0	*	*	1	c	J
-Chromosome4	158016155	G	1	A	s	0	*	*	1	*	s	2	A.	sk	5	.AAAA	ssoso
-Chromosome4	158016172	C	1	.	s	0	*	*	1	T	s	2	T.	ss	5	.TTT.	sssss
-Chromosome4	158016227	G	1	,	J	0	*	*	1	a	J	2	a,	JJ	5	,,aaa	JJJJJ
-Chromosome4	158039358	G	2	..	ss	0	*	*	2	A.	ss	1	A	o	0	*	*
-Chromosome4	158076290	A	1	t	J	0	*	*	1	c	J	0	*	*	2	,t	JJ
-Chromosome4	158076312	C	1	t	J	0	*	*	1	,	J	0	*	*	3	,,t	FJJ
-Chromosome4	158100799	G	2	t,	JJ	0	*	*	1	,	J	0	*	*	1	t	7
-Chromosome4	158156345	T	1	C	s	0	*	*	0	*	*	1	.	o	3	.C.	s`J
-Chromosome4	158156360	A	1	g	J	0	*	*	0	*	*	1	.	s	3	.gg	JJJ
-Chromosome4	158156555	T	0	*	*	1	.	s	0	*	*	1	C	A	3	..c	AJJ
-Chromosome4	158156590	A	0	*	*	1	.	s	0	*	*	1	G	\	3	.g,	sJ:
-Chromosome4	158158526	C	1	T	J	0	*	*	2	T.	JF	0	*	*	1	.	J
-Chromosome4	158158658	G	1	t	J	0	*	*	3	tt,	7JJ	0	*	*	1	,	J
-Chromosome4	158158697	G	1	a	<	0	*	*	3	aa,	FJJ	0	*	*	1	,	J
-Chromosome4	158364986	T	0	*	*	1	.	J	0	*	*	3	.GG	sss	1	G	V
-Chromosome4	158365023	G	0	*	*	1	.	a	0	*	*	3	ATT	sss	1	A	o
-Chromosome4	158365043	C	0	*	*	1	.	s	0	*	*	3	.TT	sss	1	T	s
-Chromosome4	158365078	G	0	*	*	1	,	F	0	*	*	3	c,c	JJJ	1	c	F
-Chromosome4	158365079	G	0	*	*	1	,	J	0	*	*	3	c,c	JJJ	1	c	F
-Chromosome4	158365088	T	0	*	*	1	,	J	0	*	*	3	a,a	JJJ	1	a	J
-Chromosome4	158430777	C	0	*	*	2	,-11ttggtggtgtt.	Hs	1	g	J	1	T	s	1	,	F
-Chromosome4	158488145	C	2	,,	7J	0	*	*	3	,g,	FJA	0	*	*	2	,t	JF
-Chromosome4	158509716	G	1	c	J	1	.	<	0	*	*	2	T.	AJ	0	*	*
-Chromosome4	158509753	C	1	t	A	1	.	A	0	*	*	2	t.	Aa	0	*	*
-Chromosome4	158509758	G	1	t	>	1	.	7	0	*	*	2	a.	As	0	*	*
-Chromosome4	158626003	G	0	*	*	1	.-2CA	`	1	.-2CA	F	0	*	*	1	,-2ca	F
-Chromosome4	158626039	A	0	*	*	1	.-8GGCCTCCG	f	1	.-8GGCCTCCG	s	0	*	*	1	,-8ggcctccg	J
-Chromosome4	158753279	T	2	.$c	jJ	0	*	*	1	C	s	0	*	*	2	,c	JJ
-Chromosome4	158753385	A	2	,g	JJ	0	*	*	1	,	J	0	*	*	1	g	<
-Chromosome4	158870692	A	1	,-1g	J	0	*	*	1	,-1g	J	0	*	*	1	,-1g	J
-Chromosome4	158953675	C	0	*	*	1	.	J	2	.G	JJ	0	*	*	4	..GG	JJFJ
-Chromosome4	158953736	G	0	*	*	1	.	J	2	.T	FJ	0	*	*	4	..TT	<JJs
-Chromosome4	158953756	G	0	*	*	1	.	`	2	.A	eJ	0	*	*	3	..A	jjs
-Chromosome4	159011544	G	0	*	*	2	,t	JF	0	*	*	1	t	F	1	,	F
-Chromosome4	159011583	G	0	*	*	1	a	<	0	*	*	1	,	<	3	,Aa	JJJ
-Chromosome4	159011615	C	0	*	*	1	g	J	0	*	*	1	,	J	2	,a	JF
-Chromosome4	159164964	C	1	,	J	0	*	*	0	*	*	1	a	J	3	,a,	JJJ
-Chromosome4	159237554	T	1	,	E	0	*	*	1	,-3aga	J	1	.-3AGA	s	1	,-3aga	J
-Chromosome4	159287233	T	0	*	*	1	,	J	0	*	*	1	c	<	2	,c	JJ
-Chromosome4	159313643	G	0	*	*	1	.-14TCCTCTAGCTCCTT	5	1	.-14TCCTCTAGCTCCTT	5	1	.	J	0	*	*
-Chromosome4	159337186	A	44	CCCCCCCCCCCCCCCCCCCC........................	JJJJJFJJJJJJJJJJFJJJFFFFFFFFFFFFFFFFFFFFFFFF	84	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC...........................................	JJJJJJJJJJJJJJJJJ<JJJAJFJJJ7JJJJJJJJJJJFJFFFFFFFFFFFFFFFFFFFFFFFFAAFFAFFAFFF<FFAFFFA	188	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC.....................................................................................................	JJJJJJJJJFJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJ<JJJJ7JJAFJFJJJJJ<F<JFJJFJFJFJJJFJJJ7JJJJJJJJJJFFFFAFFFFFFFFFFFFAFFFFFFFFFFFAFFFFFFFFFF?FFFFFFFFFFFFFFFFFFFFFFFFFFFAFFFAFFFFFFFFFFFFFFFAFFFFFFFFFFFA	111	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC..................................................	JJ<JJJJJJJJF7JJJFFJJJJJJJJAJJJAFFJJJJJJJJJJJJFJJFJJJJJJJJJJJ=FFFFFFAFFFFFFFAFAAFFFFFFAFFFAFFFFFAFFFFAFAFFFA<FFF	137	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC...............................................................	JJJJJJFJJJJJJJJJJJJJJFJJJJFJJFJJJFJJJJJJJJJAFFFJJJJJJJJJJJFJJJJJJFJJJJJJJJFFFFFFFFFFFFFFFFFFFFFFFAFFFFFAFFFFFFFFFFFFFFFAFFFFFFFFFFFAFFFFA
-Chromosome4	159337291	T	47	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA,-6tggcta.-6TGGCTA.-6TGGCTA	CCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCC>	90	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA	CCCCCCCCCCCCCCCC>CCCC9C>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>C>CCCC>CCCCC	201	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..-6TGGCTA	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCC>CCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCC>CCCsCCCCCCCCCCCCCCCC>CCCCCCCCCC>CCCCCCCCCCCCCCCCC>CCCC>CCCCECCCCCCCCCCCCoC	123	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..	CC9CCCCCC>CGCCCCCCCCCCCCC>>CCCCCCCCCCCCCCCCC>CC>CCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCC>CCCCCCC>CCCCCCCCCCCCCCCC>CCCCCCCCss	141	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.	CCCCCC>CCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCRCCCCCCCCC>CCCCCC@C>CCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCs
-Chromosome4	159348438	C	11	,,t.,.t.t..	JJJJJAJAJJJ	12	tt,.,..T,.t.	JJJJJoJeJJsJ	10	t,,..T.,..	JJFJJJsJFF	29	...t,T.A,.t,,..,.t.,,...,t,..	FJoJJssJJJJJJJoJJJJAJJFJJjsJF	8	.,,,..tt	FJJJJJJD
-Chromosome4	159348548	T	5	.c..,	F7JJJ	8	..,.c...	ssJJsJ7J	8	....,..,	JJFsJJJJ	17	,.c.,,c,...,,.,..	FJJsAJJJFJ`JssJJF	5	.,c,,	JJJJJ
-Chromosome4	159348718	G	5	,cc,c	JJJFJ	4	,c,c	JJJJ	5	,,cc,	JJJJJ	10	cc,,ctcccc	AJJJJJJJJF	3	,,,	JJF
-Chromosome4	159351674	G	0	*	*	1	,-1t	J	2	,$,-1t	AJ	2	,-1t,-1t	JJ	0	*	*
-Chromosome4	159354749	A	36	...............................+1G....,	aossssfkjosfsosMssasMssjsj`fssLksWs>	64	...............................................................+1G.	Mo`ssssaossssossFssjsRssseVssojojssojVsoso\jsssssjkeooosssjsRkjs	117	.........................................................+1G.....................+1G.......................................+1G	okssooasoksWs\oVso\kjsssssossssssosjssjRooeVRfk`Mss<9`osSssjsojoRoososRssssssQVssssoVooHooesMjsosssssssesjsVsossVReoj	83	.................................+1G.................................................,	j\osoosCooao``osfssoMsoaeosesojshRoR`ssVsssoossssoWsossss9osooossssjosksosoasoJsssA	93	.........................+1G....................................................................	sjos\oo\oR9jsoVPosfsssssisVVsf`ooskssosesVssssosRRsossojsojssjsosVoosjsaoass\MsskseskjssossMs
-Chromosome4	159354792	A	32	.,t,,,,,,,,,,,,,,,,,,,,,,,,t,,,,	sJJJJJFFJ<JJFAAJJA<FJJAFFFFJJ7JJ	64	T..t,,,,,,,,,t,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,	`ooJJ<JJFJJFFJJJJ<<JJJJJFFJAJJJJFJFAFJAAAJJF7JJJ<FAFJ7JFFJFFJAJJ	112	.T..,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,t,,,,,,t,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,,tt,,,,	oossAJJ<JJJJAJJJFJJJAJ7JF7JJAJJFJ<AJJJFFJJJJ7JJJFA7AFAJJ7AJJJJJF<FFFJJ7JFFJFJ7JFJJJFFJJJ<JA7FJJ7JJJJJJAJ<JAJJJJA	79	...........,,,,,,,,,,,,,,,t,,,,,,,,t,,,t,,,,,,t,,,,,,,,t,,,,,,,,,,t,,t,,t,,,,,,	asjsHossossFJAJFJJFF7JJAFJFFJ7JJAJJJAAAFAJ<7AJ7JJFFJJJFJJFJJJJAJ7FFJFJJFJJFJJ7A	85	.,,,,,,,,,,,,,,,,,,,,t,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,	sJJJFJJJJ<7JJJFFJJJJJFJJJJFFJJ<JJ<7FFFJJJFJAAJJJJFFJJJJJAFFAAJAJFFFA<JJJJJFJFFFFJJF7A
-Chromosome4	159355873	C	0	*	*	1	.	s	2	Gg	XJ	4	gg,G	JJJM	0	*	*
-Chromosome4	159359085	C	1	.	J	0	*	*	2	T.	ss	6	.TT...	sJoJss	3	..T	sJj
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-Chromosome4	207215581	A	29	..T..TT..TT.T..,....,,.,,,..,	7JVoVJ7WjJJaJR`:JssM:AVAJoVsA	17	..T.t...,T,,,..,.	VooVsVso:sAoAsVsj	24	.T.TT,.,,,,..,,,,.T..,t.	sso>:js5A`>\J7JAJCsVJs7J	34	...T.T.T..T...T....,...,.....,....	soses>jsssAseH<sos<sMjJsjsoseJossF	23	...T.TT.TT...T,,.,.,T,,	7esAjsso`:sssFjass<7JFA
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-Chromosome4	207215586	A	25	GGGGGGGGGGGGggGGGG.,gggGG	Je<sJ`7JJsJeAJ`oseAFJJo`s	17	GGGGGGgGGggg.GggG	os\ososoofJFejAlV	25	GGGGGGGGgG,gGgGggg.GG.,gG	soJjJ7sJsAAsjJJJJJVsoJsAJ	35	GGGGGGGGGGGGGGGGGgGGGgGGG.,ggG.Gg.G	sssssssssoo\`JjsssjjJss`soA6JsJf@sF	23	G.GGGGGGGGGGGggG,GgGgg.	nVsssjAR`ossJJsoAAFJFAA
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-Chromosome4	207215588	A	25	T.T...T..T..tt...t.ttt,TT	JRJs7MA<FsFRVJosVA`JJJoos	17	T..TT.,T.ttt.t.t.	eVoosjsso:JJaJRls	24	TTT...Tt..,T,.ttt..TG,,.	seJoVs7A7<sRJJJJJjssJs7J	34	TT.TTTT.T..T..T.tT.T,..t..t.t..,,.	ssos`ossRssJjssAAooAsoo>Ms>sJsa6@s	23	.....T......,ttt.,+1t.t.,t	\ssssARAsssFsJAAss7AJFJ
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-Chromosome4	207215595	A	24	T.......T..t,...t.ttt,..	JRF`<VJJfJV:Foj`AaAJAess	22	T....,T.t,t..,T.......	`oRkfjsoA>J`eJ<eJJAJJA	28	T........t..,T,.ttG..Gt,....	ssFsJV7s<AF<k`JFAAsssssJJFAJ	35	TT.T......T....T.tT.T,.....tt..,g..	ssssAsss>oHRJoos<AkWJsssssoAFsoJJJJ	20	..........,t.,.t.tG.	sAjso6os`77AoVF>J>AA
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-Chromosome4	207215599	C	24	..........G,,.....,,,,..	JfoF`AFJaFVoFojsVosJsojs	21	.....,..,,,T,.,..G...	osasVsoskJosssJJRJJJJ	27	.....T.,..,.,.t,,,....,,...	joAJjM7sJAosJJAsssossssFJJJ	37	.......G...G.......,...g.GA..,..,,...	Vsoso`osVsoo`\JsssFssjJA:sssoJssJA<JJ	22	............,,.,.,.,,.	7ssosj<j6ossJssA<eJFeJ
-Chromosome4	207215601	C	24	............,.....,,,,..	FR<oFeFJFeFasjosjjAJAAos	22	.T....,..,,..,...G.GG.	`ekksesssoJsVF`JJAJJA<	28	.........,..,.,.,,....,,.GGG	skJo<jAjFs7FooJJAA`ssosAJJAJ	37	............G.....,...,...G.,..,t,.G.	jssssjjs`sokfJsssFsjjJsssssoJssJA><JJ	22	............,,.,..,,.G	7ssssoFjfossJssoAJFAJA
-Chromosome4	207215602	T	25	............,,.....,,,,..	FV7oAkJJJoJRRAsssoosJooss	21	......,..,,c.,.......	sjajsRsosjJAos`oJJJJA	26	.......,..,.,.,,,G..Gg,...	ooFjesFjAJoVJJssfkssssAJAJ	38	.............,$.C....$,...,.....,..,....	ossssjJsVsA`fAo<sssFsfsJsssssjJsfJA7JJ	21	...........,c.,.,.,,.	ssoss`\sss7JAso7jJ7oJ
-Chromosome4	207215606	C	23	...T...T...,..,t,,ttt..	F`7`FVJJoFVkjVsAJAAAAos	22	..T..Ta..,,,.T,...T.TT	Vs9ksVooo`JAseJsJJAJJJ	26	......,..,.gTt,,A.,.t,.TT.	ss7oAAoAFsoJJAAAss>ssJJFAJ	36	............T...,.t..,.....,GT.,.TTT	osossjsjAsosoJssssAeJsssoskJsFoJlJJF	21	.G...A..t,,,.,.,.,,,.	sAso`sAAAJoAooAfJ<AAJ
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-Chromosome4	207215858	C	6	,,GG.,	JAJJe7	15	,...,...*.,,,,,-10tatagctcat	Js\sJ77j;sFJFB?	8	,.....,.	JOsJYJAo	19	.*,.-10TATAGCTCATG,,,.,.,,,.A..,	o;J=AJJJ`JsJJJE9sss	7	*.,,,.,	9sJsJsJ
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-Chromosome4	211553551	C	1	A	a	1	T	R	1	.	s	0	*	*	2	A.	Xs
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-Chromosome4	211728285	G	5	A.A.A	J@JJJ	3	AA.	JJ@	2	A.	JJ	5	AA.TA	JJJ<J	5	.AAA.	JFJJJ
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-Chromosome4	211732722	C	0	*	*	1	.-1T	r	1	.	s	0	*	*	1	.-1T	s
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-Chromosome4	212060778	T	2	.C	FJ	0	*	*	1	C	J	0	*	*	2	.C	FF
-Chromosome4	212060796	C	2	.T	JJ	0	*	*	1	T	J	0	*	*	2	.T	JJ
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-Chromosome4	212061111	T	2	a,	JJ	0	*	*	1	,	J	0	*	*	2	a,	JJ
-Chromosome4	212061162	C	2	,a	JJ	0	*	*	1	a	J	0	*	*	2	,a	JJ
-Chromosome4	212064086	G	3	A.A	JsJ	1	.	<	0	*	*	0	*	*	1	A	F
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-Chromosome4	212242857	A	3	g,,	JJ7	1	,	J	0	*	*	0	*	*	3	,g.	JJJ
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-Chromosome4	212873404	C	3	.+1G.,+1g	=s=	0	*	*	1	.	J	0	*	*	2	.+1G,+1g	==
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-Chromosome4	215280089	C	1	t	J	1	.	o	0	*	*	2	T,	aJ	0	*	*
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-Chromosome4	215596681	C	1	.-2AT	E	0	*	*	1	.-2AT	E	1	.-2AT	E	0	*	*
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-Chromosome4	221189182	T	1	.-3AAA	J	1	.-1A	<	0	*	*	1	.-1A	s	0	*	*
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-Chromosome4	221290171	G	0	*	*	2	,a	FJ	1	.	s	0	*	*	1	a	F
-Chromosome4	221290189	G	0	*	*	2	,a	AJ	1	.	s	0	*	*	1	a	J
-Chromosome4	221309604	T	1	G	J	0	*	*	2	C.	JJ	0	*	*	1	.	J
-Chromosome4	221309676	A	1	.	F	0	*	*	3	.G.	JJA	0	*	*	1	G	J
-Chromosome4	221309868	A	1	c	J	0	*	*	3	,c,	JAF	0	*	*	1	,	J
-Chromosome4	221387686	C	0	*	*	2	,-1g,$	FF	2	,-1g,-1g	AF	2	,-1g,-1g	FF	0	*	*
-Chromosome4	221415240	G	2	.A	JA	0	*	*	1	A	J	1	.	J	0	*	*
-Chromosome4	221415247	G	2	.C	JJ	0	*	*	1	C	J	1	.	J	0	*	*
-Chromosome4	221415273	C	2	.A	JF	0	*	*	1	A	J	1	.	J	0	*	*
-Chromosome4	221415298	A	2	.G	JJ	0	*	*	1	G	<	1	.	J	0	*	*
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-Chromosome4	221415325	G	2	.A	JF	0	*	*	1	A	F	1	.	J	0	*	*
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-Chromosome4	221463828	C	3	,-1t,-1t,	A<F	0	*	*	1	,	J	1	,-1t	F	0	*	*
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-Chromosome4	221751050	C	0	*	*	1	.-3TTT	:	3	.-2TT.,-2tt	JsF	0	*	*	1	.-2TT	F
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-Chromosome4	221964088	G	0	*	*	2	,-1a,-1a	JJ	0	*	*	1	,+1a	J	1	,-1a	J
-Chromosome4	222021725	C	1	,-2ag	J	0	*	*	0	*	*	1	,-2ag	J	1	.-2AG	s
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-Chromosome4	222040386	C	2	,-4gccg,	Is	1	.-4GCCG	I	1	.	s	0	*	*	0	*	*
-Chromosome4	222049181	T	1	c	F	0	*	*	3	CC,	fsJ	0	*	*	1	.	s
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-Chromosome4	222351039	C	2	.T	JJ	0	*	*	1	T	J	0	*	*	3	...	=JJ
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-Chromosome4	222569347	C	3	T..	JJJ	2	..	JJ	2	T.	JJ	0	*	*	2	TA	J<
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-Chromosome4	250499510	A	102	.$,.,,+2at,+2at.+2AT.+2AT,+2at,+2at,+2at..+2AT,+2at..+2AT.+2AT,,+2at,,+2at,+2at,,+2at,+2at,,,,,,,,,,,,,,,,+2at,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	P7MJ77GM777`77sMMJ7F77J77<JFJFJAJ7JJJJAJ6FJJJJJFJJFJJFJFF777777777777777777777777677776777777777777777	57	..+2AT..+2AT.+2AT..+2AT,+2at.+2AT.+2AT.+2AT,+2at,,,+2at,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	MGoMMoM7MMM7<J7JJJJJJJJAFJFJJJJJJJA7777767776777777777777	81	,$..+2AT,+2at,+2at,+2at,,+2at,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2cg,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,	:sM776J7FJAJJFJFJAJ<JJ777JJ7JJ<JJJFJJJ77777767777?776777777777777777777777777777F	85	.,+2at.+2AT.+2AT..,+2at,.+2AT,,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,,+2at,+2at,+2at,+2at,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	R7MMsf7J7FAJJFJAJJJ7JJJAJFJ7JJ76777777777777777777777676767777777A6776=77777777767777	56	.$.$..+2AT.+2AT,,.+2AT,,,+2at,+2at,,,,,,,,,,,,,+2at,+2at,+2ct,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	cc\MMJJ7JJ777FJJJJ<7JJFJ77;67777777767777677777777777777
-Chromosome4	250499867	C	1	,-1g	7	0	*	*	0	*	*	1	,-1g	A	1	,-1g	J
-Chromosome4	250502357	G	107	,-5ggtga..-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA....-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA......-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA...-5GGTGA	IJ5JJ5555J5555J555J555J55JJ5J555J5555FJ55555J5555555J5J555JJ555AA5JAJ5JF5555555A555F5555J5J`JJJ555J5J5J5JA5	87	.,-5ggtga,-5ggtga.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA...-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA..-5GGTGA....-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA......	J?I55J57555F5JE5J55J55<5J576<5J5AJ5F5JHJ5J555F55555JJJJ555F5JJ555JJJJ5J5J7J5JII55JsJJJJ	122	,-5ggtga,,-5ggtga..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA...-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA	GsIJ55J5J5J555555555J555A5555F5J5J5F555J5J55555555J555JJ5JJ5JJI555J5J55J5F5JIJ555J55JJ5555J555JJ555J555555J5J5J5JJJ555F555	160	,-5ggtga,,-5ggtga,-5ggtga..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA....-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.......-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA....-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA	I`IIF5J575JJ555555J5J5J5J5G55555J555J5FJ5FJJ557F55JJ555FJJ5J5J55555F5FJJsjJ565555JH555JJ555JF5F55J5J5JsJ55F5JJ55JJ555J55J5F55F55<V5555JJ555J5575555JJFJ5F55J5JJ5	135	.-5GGTGA.....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA	5JJAJ555555J5555s5555J5F555F5J5F5555J5J555HJ555J55555JJ5F5555<555J55F5555555555JJ5J55JJ:J5J55555755oJJ5555JJJ55555JH55J55I555JJ5555JJ55
-Chromosome4	250502654	C	99	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJ7JAJJJ<7AFJFFAFJFFA<JJAAFJ<FJFJFFAFJJFJFJJAAJ<7A7AJFJ<<JFJFJAAAAJFF7JAF<JAJJAFJFAJJJ<<F7JFJJFA	68	,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	FAJAJFF<JFJFFJJJ<FJJFJ<JFJJ7<JJAJJAJ<J<<FJAFJ<<FJFJJJJFAJJFAJJ<77JJ7	103	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	FJJJFJ<JJJJ<JAA<FJFJJ<J<FFF7<JAFJFJFJJJFJJF<7AJJFAJJJJFFAJJ7JFAJJJJ7F<JJJF7JJFAAF7FFJJJFFJ7FFFJJ<FFJAJJ	145	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,^I,	JJJJJJFFJJAF<FJJJJAJFFAJJFAFJAF<JJ<JJJFAFJJJFJ7<F7JJJ7FFJAJJAJJJJFFJFJFJ<JJJJJJJJJ<7JJJJJA<F<JJJFF7FJAAJJ<JAJJJJ7JAFJFJJFJJAFJJAJFJJJJJFF<AAFJJFA	126	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJJAF7JAA7JJJAFFJA<FJJJJJFJJF7JJAFA77FJJ7FJJJAA<FFJJFFFFJFJ7FFAJF7AJJF7JAJJAJJ7J<JJFAAJFFFJFJFF7<7JF<FFF<FFJFAFFJA7AA<JJ<JJFJ
-Chromosome4	250505579	T	126	..+3AAA.+2AA.+2AA.+2AA...+3AAA..+4AAAA..+4AAAA.+2AA.+2AA.+3AAA.+3AAA...+3AAA.+3AAA.+3AAA.+3AAA.....+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+1A.+3AAA.+3AAA.+1A.+2AA.....+2AA.+2AA..+2AA.+3AAA..+3AAA..+3AAA..+3AAA..+3AAA.+2AA.+3AAA.+2AA.+4AAAA.+2AA...+1A.+2AA..+3AAA.+1A.+5AAAAA.+3AAA...+3AAA..+1A.+3AAA...-1A.+4AAAA.+1A.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+1A..+3AAA.+3AAA...+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+3AAA...+3AAA.+2AA.+3AAA.+3AAA.+3AAA.+4AAAA..+3AAA.+4AAAA..+3AAA.+3AAA.+3AAA..+1A.+3AAA.+3AAA...+3AAA..+2AA..+3AAA..+3AAA.+3AAA..	JJFJJJJJJFJJJJJFJJSJJJJJJJJJJJJJJJJ<JAJJJJJeAJFF7JJJJ=FJF<JJJJJJJJAFJJJJJJJAJFFJJJJJJJJAJJJFJJJDJJJJFJJJJJJFJJJo7FsA=FFJJJJJJF	80	...+3AAA.+3AAA.+3AAA..+3AAA...+3AAA...+3AAA.+3AAA...+3AAA.+3AAA.+4AAAA.+3AAA.+3AAA.+3AAA.+3AAA*.+3AAA..+3AAA.+3AAA.+4AAAA.+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+2AA.+3AAA..-1A.+3AAA.+2AA..+3AAA.+3AAA...+3AAA..+3AAA.+2AA...+1A.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA....+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+1A.+3AAA..+3AAA..+3AAA..+2AA.+3AAA.+3AAA.+3AAA..+2AA	JJJJJJFJJJFssEsJJJFJAJJcJJ=JFJjJJAJJJJJJJFFJFJsJJJjoJJJJJ<JFJJJJJFJJJsJJJ7JJJJJo	117	.+2AA.+4AAAA.+1A.+3AAA.+3AAA.+3AAA...+2AA..+1A.-1A.+2AA.+3AAA.+3AAA...+3AAA.+2AA.+3AAA.+3AAA..+1A.+3AAA...+4AAAA.+3AAA.+3AAA.+3AAA..+1A.+3AAA....+3AAA..+3AAA.+4AAAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA.+3AAA.+4AAAA.+3AAA..+3AAA..+2AA.+2AA.+4AAAA..+3AAA.+3AAA..+3AAA...-1A...+3AAA.+3AAA.+4AAAA.+3AAA..+2AA.+3AAA....+3AAA.+3AAA.-1A.+3AAA..+3AAA..+3AAA..+2AA...+2AA.+4AAAA..+4AAAA..+2AA...+2AA.+3AAA.+4AAAA.+3AAA..+3AAA...+1A.+3AAA.+2AA.+1A.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+4AAAA.+3AAA.	FJJJFJ=AJ7FJJJJJJJJJJJJJAJJJFJJJJAJJF7FJJJJJJAJJJJJJ7JFJJ7JJJJJJJJJJJFAFJJFJJJJFJ<7F7JJJJJJA<JA<FJJ7FJFJrJJJ7sJjJJJJA	124	.+3AAA.+3AAA.+2AA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA.+3AAA.+2AA..+3AAA.+2AA..+4AAAA.+3AAA.+3AAA.+3AAA.-1A.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+2AA.+3AAA.+2AA.+2AA..+2AA.+2AA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA..+3AAA..+3AAA...+3AAA..+3AAA.+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+3AAA.+3AAA.+1A...+3AAA.+3AAA.+1A.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+4AAAA.+3AAA.+3AAA.+2AA.+3AAA.+3AAA...+4AAAA....+3AAA..+3AAA..+1A..+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA..+4AAAA.+3AAA.+2AA..+4AAAA..+3AAA.+3AAA.+4AAAA.+3AAA.+2AA.+4AAAA.-1A.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA	JJJJJAJFJJJJJJJJFJJFJJAJJJJJJJJJJFJ=7JJoJJAJJFJAJAJA<JJJJJJJJJJJJJJeoJoFJJJJ`JJJJJ<JFAFJFJJJJJJJJJJJJ=J7JJJJFJeJsJjJJJJJJJJV	118	.+3AAA.+3AAA...+1A.+4AAAA.+3AAA..+1A.+2AA..+3AAA.+3AAA...+3AAA.+4AAAA.+3AAA.+3AAA.-1A.+3AAA.+4AAAA.+3AAA.+3AAA.+1A.+3AAA.+3AAA.+3AAA...+3AAA..+2AA.+1A.+3AAA.+3AAA..+3AAA....+4AAAA.+3AAA.+3AAA.+3AAA.+2AA.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+3AAA.+3AAA..+1A.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+4AAAA.+3AAA.-1A.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA..+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+4AAAA.+3AAA..+3AAA..+3AAA.+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA..+1A.+3AAA.+3AAA.+3AAA.+3AAA.+5AAAAA..+3AAA.+3AAA.+1A.+1A.+2AA.+3AAA.+3AAA.+3AAA.+2AA..-1A.+1A	JJJ<JJJFJJAFJAAJJJJJAJJJoJJJFFJF7JJJJJFoJJFJJ=J7AJJJJJ7JFGJJFJJJJJFJJJJAJJJJFJJJJJeJJJJJAJJJJFJJFJJJJJJJJJJ7sjJJJJJJJs
-Chromosome4	250506355	C	8	.Tt,T.Tt	JJFJJJJ7	22	tT,tT.TT...TT.,,tTTtTT	8JFFFJJJJFJJJJ<AJJFFJ<	18	t,tT,ttt,TTttTTtt,	F<AJ<FAJJJJJFJJ7J<	24	tt,T..TtTTTT,,,TtTTTT.tT	JJJAJJJJJJJJAJFJJJJJJJJJ	3	t,T	JFJ
-Chromosome4	250528358	C	0	*	*	2	a,	JJ	0	*	*	1	,	J	1	A	A
-Chromosome4	250541741	C	1	T	J	0	*	*	0	*	*	1	.	J	2	T.	JJ
-Chromosome4	250557028	A	0	*	*	1	C	J	1	.	7	0	*	*	2	.C	JF
-Chromosome4	250651526	A	1	.	J	0	*	*	0	*	*	1	T	J	3	T..	JFJ
-Chromosome4	250651530	A	1	.	s	0	*	*	0	*	*	1	G	J	3	GG.	JJJ
-Chromosome4	250651601	A	1	.	s	0	*	*	0	*	*	1	T	J	3	T.G	JJJ
-Chromosome4	250715884	T	1	,-2ga	7	0	*	*	1	,-2ga	J	1	,-2ga	J	1	,	F
-Chromosome4	250789233	C	1	.	J	2	T.	JJ	3	.TT	J7J	0	*	*	0	*	*
-Chromosome4	250797051	C	1	T	J	0	*	*	0	*	*	1	.	J	2	T.	JJ
-Chromosome4	250797127	C	1	.	J	0	*	*	0	*	*	1	A	J	2	.A	FJ
-Chromosome4	251092433	A	1	t	J	0	*	*	3	,,,	JJJ	0	*	*	3	.+1T,+1t,+1t	sJJ
-Chromosome4	251763052	C	1	.-2TT	J	0	*	*	1	.-2TT	J	1	.-1T	J	0	*	*
-Chromosome4	251763131	G	1	.	J	0	*	*	1	.-1A	s	1	.-1A	A	0	*	*
-Chromosome4	251763180	C	1	*	?	0	*	*	2	.,-2aa	JJ	1	.-2AA	j	0	*	*
-Chromosome4	251792341	T	0	*	*	1	A	s	1	,	J	2	,a	JJ	0	*	*
-Chromosome4	251856758	C	2	.T	JJ	0	*	*	1	.	J	0	*	*	2	TT	JJ
-Chromosome4	251961969	G	2	..	JJ	0	*	*	3	.AA	FJJ	0	*	*	2	.A	JJ
-Chromosome4	252183081	G	0	*	*	0	*	*	1	C	J	1	.	J	3	CC.	FJJ
-Chromosome4	252215909	A	1	G	J	0	*	*	3	..G	JJJ	1	.	J	0	*	*
-Chromosome4	252437908	C	1	g	J	0	*	*	1	.	j	0	*	*	2	.G	JJ
-Chromosome4	252560159	G	0	*	*	1	,	J	0	*	*	2	.a	se	1	A	s
-Chromosome4	252560172	C	0	*	*	1	,	J	0	*	*	2	.,-1a	ss	1	.-1A	j
-Chromosome4	252560198	A	0	*	*	1	,	J	0	*	*	2	.,-1t	sa	1	.-1T	s
-Chromosome4	252560254	T	0	*	*	1	,	J	0	*	*	2	,c	Jo	1	c	J
-Chromosome4	252565945	A	0	*	*	1	.-1C	J	3	..-1C.-1C	J<J	1	.	s	1	T	s
-Chromosome4	252584694	C	0	*	*	2	G.	JJ	1	.	J	0	*	*	1	G	J
-Chromosome4	252603565	G	1	.-8TCCCATAC	@	0	*	*	1	,-8tcccatac	@	1	.	J	0	*	*
-Chromosome4	252611085	A	1	.	F	2	..-1T	JJ	0	*	*	0	*	*	2	..-1T	7A
-Chromosome4	252611111	C	1	.+1T	J	2	.+1T.	sJ	0	*	*	0	*	*	2	.+1T.	FJ
-Chromosome4	252611250	C	1	a	J	1	,	J	0	*	*	0	*	*	2	a,	7F
-Chromosome4	252611300	G	1	c	J	1	,	J	0	*	*	0	*	*	2	c,	FJ
-Chromosome4	252912680	C	0	*	*	1	.	J	1	.-2AT	B	1	*	H	0	*	*
-Chromosome4	252918181	C	0	*	*	1	.	\	1	.-4ACGT	I	2	.-4ACGT,-4acgt	55	0	*	*
-Chromosome4	252935111	T	0	*	*	0	*	*	1	.-4TAAA	I	1	*	A	1	.-4TAAA	5
-Chromosome4	252974390	T	2	^K.^].	AA	1	.-1A	E	0	*	*	0	*	*	2	C^].	FA
-Chromosome4	252974403	A	2	.G	JJ	1	.	J	0	*	*	0	*	*	2	G.	JJ
-Chromosome4	252974411	T	2	.C	FJ	1	.	J	0	*	*	0	*	*	2	C.	JJ
-Chromosome4	252987988	G	0	*	*	3	a,,	JJJ	1	A	j	0	*	*	1	,	H
-Chromosome4	252988075	A	0	*	*	3	,+1t,+1t,	DDF	2	,+1t,+1t	GG	0	*	*	2	,+1t,+1t	JF
-Chromosome4	253279216	C	0	*	*	1	.-1T	A	1	.	J	1	.-2TT	J	0	*	*
-Chromosome4	253350908	C	1	T	J	1	.	J	0	*	*	2	T.	oJ	0	*	*
-Chromosome4	253460249	G	0	*	*	3	..T	AJJ	3	...	JJJ	5	A..A.	7JJ7J	1	A	J
-Chromosome4	253646426	G	1	.-1A	J	1	.-1A	J	1	.-1A	J	0	*	*	0	*	*
-Chromosome4	253704015	G	1	.	J	2	.C	JJ	2	T.	JJ	1	A	J	0	*	*
-Chromosome4	253813616	A	0	*	*	1	,-1t	J	1	,	7	0	*	*	1	,-1t	F
-Chromosome4	253867697	C	0	*	*	1	,-3ttg	J	0	*	*	1	,-3ttg	J	1	,	J
-Chromosome4	253868539	A	0	*	*	0	*	*	1	C	s	2	..	FF	2	G.	JF
-Chromosome4	253934370	A	2	.G	JJ	1	.	F	0	*	*	1	G	J	3	GG.	JJA
-Chromosome4	253934572	G	2	,t	AF	1	,	F	0	*	*	1	t	A	3	t,t	FJJ
-Chromosome4	253948600	A	1	.-2TC	J	0	*	*	1	.-2TC	F	0	*	*	1	.	J
-Chromosome4	254014622	C	1	.-1A	J	1	.-1A	J	1	.-1A	J	0	*	*	0	*	*
-Chromosome4	254054699	C	3	.T.	JJJ	0	*	*	2	..	sA	0	*	*	2	.T	JF
-Chromosome4	254054711	C	3	.GG	F<J	0	*	*	1	.	s	0	*	*	2	GG	J<
-Chromosome4	254054929	A	3	,,g	JJ<	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome4	254055055	T	2	c,	JJ	0	*	*	1	c	J	0	*	*	2	c,	JJ
-Chromosome4	254083580	G	1	.-2AC	<	0	*	*	1	.-2AC	<	1	,	J	0	*	*
-Chromosome4	254091986	A	2	G.	JJ	0	*	*	2	G.	JJ	3	...	JJJ	0	*	*
-Chromosome4	254092146	C	2	t,	FJ	0	*	*	2	t,	JJ	3	,,,	FJJ	0	*	*
-Chromosome4	254105809	T	2	g,	<J	0	*	*	0	*	*	1	G	J	2	,,	J7
-Chromosome4	254105814	T	2	a,	JF	0	*	*	0	*	*	1	C	<	2	,,	JF
-Chromosome4	254105825	G	3	c,c	AAJ	0	*	*	0	*	*	1	C	o	2	,,	J7
-Chromosome4	254146883	G	2	.A	JJ	0	*	*	2	..	JF	1	A	J	0	*	*
-Chromosome4	254306395	T	2	G.	JJ	0	*	*	6	....GG	<AJJJJ	2	..	JJ	5	..C..	JFJJR
-Chromosome4	254306584	A	2	,,	JJ	1	g	A	5	gg,,g	JJJJJ	2	,g	JJ	4	,,gg	JFJ7
-Chromosome4	254380228	T	0	*	*	1	C	J	1	.	J	4	.CCC	JJFJ	0	*	*
-Chromosome4	254380230	G	0	*	*	1	A	J	1	.	J	4	..AA	JJJJ	0	*	*
-Chromosome4	254380333	C	0	*	*	2	T.	os	1	.	J	4	..TT	Assj	0	*	*
-Chromosome4	254452814	G	0	*	*	2	.A	JJ	2	.A	JJ	0	*	*	1	.	J
-Chromosome4	254492733	T	2	,g	JF	4	,,,,	7JAJ	2	g,	AJ	0	*	*	1	c	J
-Chromosome4	254554927	G	0	*	*	0	*	*	1	A	H	2	..	JJ	2	A.	FJ
-Chromosome4	254554933	A	0	*	*	0	*	*	1	G	\	2	..	JJ	2	G.	FJ
-Chromosome4	254555002	G	0	*	*	0	*	*	1	A	a	2	..	ss	2	.A	as
-Chromosome4	254555048	C	0	*	*	0	*	*	1	,	F	2	A,	sJ	2	Ta	sF
-Chromosome4	254977298	A	0	*	*	1	.	J	2	.G	JJ	0	*	*	1	G	J
-Chromosome4	255060964	C	3	,,t	JF<	0	*	*	1	t	J	3	,,,	FJJ	3	tt,	JJF
-Chromosome4	255060979	A	3	,,,	J<J	0	*	*	1	g	J	3	,,g	JJJ	3	,g,	JJF
-Chromosome4	255061066	C	3	,t,	JJF	0	*	*	1	t	J	3	t,,	JJJ	3	a,,	JJF
-Chromosome4	255103688	T	7	,,,,,,g	JJJJJJJ	7	,,,,,,g	AJJJJJ<	14	,,,,,ggg,,,,,g	JJJJJJJJJJJJJJ	5	,,,,,	FJJJF	12	,,,,,g,,,,,,	JJJJJJJJJJJJ
-Chromosome4	255112298	G	1	t	5	0	*	*	4	ttt,	555J	0	*	*	1	,	J
-Chromosome4	255192846	C	0	*	*	1	,-2tg	H	1	.	s	1	.-1T	H	0	*	*
-Chromosome4	255223524	C	1	T	J	0	*	*	0	*	*	2	,T	FJ	1	.$	H
-Chromosome4	255273856	T	0	*	*	2	..-1G	JJ	3	...-1G	JJJ	0	*	*	1	.	J
-Chromosome4	255273939	C	0	*	*	3	T..	JFJ	3	..T	JJJ	1	T	J	1	.	A
-Chromosome4	255273960	T	0	*	*	3	AC.	J\o	3	CC.	``o	1	.	s	1	C	h
-Chromosome4	255274027	C	0	*	*	3	T,,	VJJ	3	t,,	JJJ	1	.	s	1	t	J
-Chromosome4	255274048	A	0	*	*	3	gg,	JJJ	3	g,,	JJJ	1	,	J	1	g	J
-Chromosome4	255274073	G	0	*	*	3	t,,	F<J	3	t,,	JJJ	1	,	J	1	a	J
-Chromosome4	255456540	T	2	C.	JJ	2	..	AF	2	.C	JJ	1	C	J	4	C..C	JAJF
-Chromosome4	255541369	A	2	.g	sJ	0	*	*	1	,	J	2	gg	JF	0	*	*
-Chromosome4	255640019	T	1	.-1C	7	1	.-1C	J	1	.-1C	J	0	*	*	0	*	*
-Chromosome4	255671855	C	1	A	J	0	*	*	0	*	*	1	^].	<	2	A.	JJ
-Chromosome4	255671867	C	1	.-1A	J	0	*	*	0	*	*	1	.	J	2	.-1A.	JJ
-Chromosome4	255672063	T	1	g	F	0	*	*	0	*	*	1	,	J	2	g,	JJ
-Chromosome4	255859011	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
-Chromosome4	255859014	G	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
-Chromosome4	255859061	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
-Chromosome4	255859082	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
-Chromosome4	256067675	A	0	*	*	1	C	J	2	..	AA	3	CC.	JFA	0	*	*
-Chromosome4	256067679	G	0	*	*	1	A	J	2	..	JJ	3	AA.	JJJ	0	*	*
-Chromosome4	256067716	C	0	*	*	1	A	s	2	..	os	3	AA.	sso	0	*	*
-Chromosome4	256067760	A	0	*	*	1	.	s	2	T.	os	3	..T	sos	0	*	*
-Chromosome4	256067782	A	0	*	*	1	C	s	2	..	ss	3	CC.	oss	0	*	*
-Chromosome4	256067795	T	0	*	*	1	.	s	2	A.	ss	3	..G	soj	0	*	*
-Chromosome4	256175856	A	2	c,	JJ	0	*	*	0	*	*	2	c,	JJ	1	c	J
-Chromosome4	256175902	G	2	,,	J7	0	*	*	0	*	*	2	,a	JJ	1	t	J
-Chromosome4	256218376	C	1	.	C	1	.-1A	s	0	*	*	0	*	*	1	.-1A	J
-Chromosome4	256274442	C	4	....	JJ7J	0	*	*	4	...T	JJJJ	2	T.	JJ	0	*	*
-Chromosome4	256341303	G	0	*	*	2	A.	sJ	1	.+1A	s	0	*	*	1	A	F
-Chromosome4	256341479	C	0	*	*	1	,	F	0	*	*	1	a	F	2	A.	Js
-Chromosome4	256403052	T	2	,a	AF	0	*	*	1	a	J	0	*	*	2	,,	JJ
-Chromosome4	256680064	G	0	*	*	1	.-1A	s	1	.-1A	J	0	*	*	1	,-1a	J
-Chromosome4	256765560	T	0	*	*	2	.G	sJ	1	G	J	0	*	*	1	.	J
-Chromosome4	256765580	T	0	*	*	2	.C	sJ	1	C	J	0	*	*	1	.	J
-Chromosome4	256765595	A	0	*	*	2	.T	sJ	1	T	J	0	*	*	1	.	F
-Chromosome4	256968673	C	0	*	*	0	*	*	1	,-2aa	J	1	,-2aa	J	1	,-2aa	J
-Chromosome4	257107110	A	1	.	F	0	*	*	2	G.	JF	0	*	*	2	G.	AF
-Chromosome4	257107601	T	1	c	J	0	*	*	2	,,	J<	0	*	*	2	,a	J<
-Chromosome4	257116935	C	0	*	*	1	,-1t	s	1	,-1t	s	0	*	*	1	,-1t	s
-Chromosome4	257416107	T	0	*	*	1	^].	A	2	C^].	JA	0	*	*	1	C	J
-Chromosome4	257416198	C	0	*	*	1	.	F	2	T.	JJ	0	*	*	1	T	J
-Chromosome4	257416230	T	0	*	*	1	.	J	2	C.	JJ	0	*	*	1	C	J
-Chromosome4	257416283	G	0	*	*	1	^],	E	2	,a	JJ	0	*	*	1	a	J
-Chromosome4	257416287	T	0	*	*	1	,	F	2	,c	JJ	0	*	*	1	c	J
-Chromosome4	257416288	A	0	*	*	1	,	A	2	,g	JJ	0	*	*	1	g	F
-Chromosome4	257416290	C	0	*	*	1	,	J	2	,t	JJ	0	*	*	1	t	J
-Chromosome4	257420903	G	0	*	*	0	*	*	1	.	F	1	T	J	2	.T	FJ
-Chromosome4	257420959	T	0	*	*	0	*	*	1	.	7	1	A	s	2	.A	FJ
-Chromosome4	257432996	A	1	g	J	0	*	*	0	*	*	2	,.	Js	3	g,,	JJJ
-Chromosome4	257433000	G	1	,-1t	J	0	*	*	0	*	*	2	,.-1T	J_	3	,-1t,+3ttt,+3ttt	JJJ
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-Chromosome4	257887629	C	1	.	J	0	*	*	2	T.	JJ	3	T..	FsJ	0	*	*
-Chromosome4	257887638	C	1	.	J	0	*	*	2	.T	JJ	3	..T	JoJ	0	*	*
-Chromosome4	257901252	T	1	.-1G	s	2	..	ss	0	*	*	0	*	*	1	.-1G	k
-Chromosome4	257916537	A	0	*	*	1	.-1T	s	0	*	*	1	,-1t	J	1	.-1T	s
-Chromosome4	258007386	A	4	,g,,	FJJJ	2	,g	AJ	3	,gg	AJJ	0	*	*	2	,g	J<
-Chromosome4	258007404	A	5	g,gg,	JJJJJ	2	,g	JJ	3	,,,	JFA	0	*	*	2	g,	JF
-Chromosome4	258012117	A	1	,	J	2	,g	7J	1	g	F	0	*	*	0	*	*
-Chromosome4	258012160	A	1	,	J	2	,g	JJ	2	g,	JA	1	G	j	0	*	*
-Chromosome4	258128928	A	2	c,	JJ	2	,,	JJ	3	c,c	JJJ	1	c	F	0	*	*
-Chromosome4	258385850	A	2	.G	JF	1	.	J	1	G	J	0	*	*	0	*	*
-Chromosome4	258385876	C	2	..-3GAG	sJ	1	.	R	1	.-3GAG	s	0	*	*	0	*	*
-Chromosome4	258385877	G	2	T*	sI	1	.	V	1	*	q	0	*	*	0	*	*
-Chromosome4	258385878	A	2	.*	sI	1	.	V	1	*	q	0	*	*	0	*	*
-Chromosome4	258385879	G	2	.*	sI	1	.	e	1	*	q	0	*	*	0	*	*
-Chromosome4	258385893	G	2	.C	eA	1	.	j	1	C	s	0	*	*	0	*	*
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-Chromosome4	258387175	G	1	A	J	0	*	*	0	*	*	2	A.	JJ	1	.	F
-Chromosome4	258387183	T	1	.	J	0	*	*	0	*	*	2	.G	JJ	1	G	J
-Chromosome4	258387196	C	1	A	J	0	*	*	0	*	*	2	A.	FJ	1	.	A
-Chromosome4	258387310	T	1	,	J	0	*	*	0	*	*	2	c,	JJ	1	c	J
-Chromosome4	258387333	A	1	g	J	0	*	*	0	*	*	2	,g	JJ	1	,	J
-Chromosome4	258387387	C	1	,	J	0	*	*	0	*	*	2	*,	JJ	1	g	J
-Chromosome4	258613747	C	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,+1a	J
-Chromosome4	258667526	A	1	,	J	0	*	*	1	,-1c	F	1	.-1C	a	0	*	*
-Chromosome4	258682527	C	1	.	J	0	*	*	1	T	J	2	.T	JJ	0	*	*
-Chromosome4	258976164	G	0	*	*	1	,	J	2	,t	AJ	0	*	*	3	a,,	JJJ
-Chromosome4	259026925	T	1	.	J	0	*	*	1	.-3AGA	J	0	*	*	3	.-3AGA..	JJJ
-Chromosome4	259030172	A	0	*	*	2	.g	sF	1	.	s	0	*	*	1	G	J
-Chromosome4	259057209	G	16	...A.......AA...	J<JFJFJFJJJJJFJF	6	......	JJJJJJ	14	.AA...........	JJJJ<JA<AJJJJJ	17	A............A...	JJJJJ<JJJJFFJ<AJJ	21	..........A.......A.A	JJAJJJJJJFJFJF<JJsJAJ
-Chromosome4	259097719	G	0	*	*	2	,T	sJ	0	*	*	1	.	o	4	..T.	JJJJ
-Chromosome4	259097887	T	0	*	*	1	c	7	1	,	7	0	*	*	4	c,cc	JJJF
-Chromosome4	259121127	C	0	*	*	0	*	*	1	T	J	1	.	J	3	.T.	JJJ
-Chromosome4	259189600	A	0	*	*	1	,-2ag	;	1	,-2ag	;	0	*	*	2	,-2ag,-2ag	;;
-Chromosome4	259247176	T	1	a	J	0	*	*	1	,	J	0	*	*	3	,,a	JJF
-Chromosome4	259332907	A	2	.T	JJ	1	T	J	0	*	*	0	*	*	1	.	7
-Chromosome4	259332927	A	2	.G	JJ	1	G	A	0	*	*	0	*	*	1	.	7
-Chromosome4	259336125	C	0	*	*	1	G	s	2	.G	ks	1	.$	a	0	*	*
-Chromosome4	259336160	A	0	*	*	1	,-8cttttttt	J	1	,-8cttttttt	J	1	,-8cttttttt	F	0	*	*
-Chromosome4	259338751	T	0	*	*	0	*	*	1	.-1A	l	1	.-1A	e	1	.-1A	R
-Chromosome4	259338760	A	0	*	*	0	*	*	1	.-3GAG	G	1	.-3GAG	C	1	.-3GAG	G
-Chromosome4	259340578	T	1	,-8ctagtgcg	6	0	*	*	1	,-8ctagtgcg	6	1	,	J	0	*	*
-Chromosome4	259345540	C	1	,	J	0	*	*	1	t	F	0	*	*	2	T,	s7
-Chromosome4	259547156	G	0	*	*	1	,	J	0	*	*	2	.a	sJ	1	t	F
-Chromosome4	259739613	T	0	*	*	4	C.C.	JJJA	2	..	FJ	1	C	J	2	C.	JJ
-Chromosome4	259814522	A	1	G	F	0	*	*	2	..	JJ	3	..-1T.	FJJ	0	*	*
-Chromosome4	259836188	G	0	*	*	1	.	J	1	A	J	0	*	*	3	.C,	JJJ
-Chromosome4	259836195	C	0	*	*	1	.	J	1	G	J	0	*	*	3	.A,	JJF
-Chromosome4	259836200	A	0	*	*	1	.	J	1	C	J	0	*	*	3	.C,	JJJ
-Chromosome4	259836208	G	0	*	*	1	.	J	1	*	C	0	*	*	3	.T,	JFJ
-Chromosome4	259836218	T	0	*	*	1	.	J	1	C	7	0	*	*	3	CG,	JJJ
-Chromosome4	259836219	G	0	*	*	1	.	J	1	.-1A	7	0	*	*	3	.C,	JJJ
-Chromosome4	259836220	A	0	*	*	1	.	J	1	*	8	0	*	*	3	.G,	JFJ
-Chromosome4	259836232	G	0	*	*	1	.	J	1	A	J	0	*	*	3	.Aa	JJJ
-Chromosome4	259836240	C	0	*	*	1	.	7	1	T	J	0	*	*	3	.T,	JJJ
-Chromosome4	259836483	A	0	*	*	1	,	J	2	,g	JJ	0	*	*	2	,g	JF
-Chromosome4	259836532	T	0	*	*	1	,	F	2	c,	:F	0	*	*	1	c	:
-Chromosome4	259893672	A	0	*	*	4	.G..	JJJJ	4	....	JJJF	3	.G.	JFs	3	.GG	JJJ
-Chromosome4	259893692	T	0	*	*	4	.C..	gAgg	4	....	gJgg	3	.C.	JFs	3	CCC	?JJ
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-Chromosome5	94227828	C	5	....T	JJJFJ	4	A...	JAJJ	0	*	*	2	T.	JJ	2	..	JJ
-Chromosome5	94228013	C	5	,,t,,	FFFJJ	4	.,t,	oJAJ	0	*	*	3	,,t	FJA	2	,,	7F
-Chromosome5	94228101	T	5	a,,,,	JFJJJ	4	a,,a	JJJJ	0	*	*	3	,,,	JJJ	2	aa	AJ
-Chromosome5	94248319	G	3	,,t	AFJ	0	*	*	1	t	J	0	*	*	1	.	s
-Chromosome5	94248375	G	3	,,a	FJF	0	*	*	1	a	J	0	*	*	1	,	J
-Chromosome5	94267434	A	1	,	J	0	*	*	1	g	J	2	g,	JJ	0	*	*
-Chromosome5	94311989	A	0	*	*	2	GT	Js	1	G	=	0	*	*	2	T.	7J
-Chromosome5	94312000	T	0	*	*	2	CC	Fs	1	.	J	0	*	*	2	C.	F7
-Chromosome5	94342156	T	0	*	*	2	.G	JJ	3	...	55J	0	*	*	1	G	J
-Chromosome5	94350672	A	1	.-1G	7	0	*	*	1	.	A	0	*	*	1	T	7
-Chromosome5	94355207	T	3	,,,	JJJ	0	*	*	1	c	J	2	,c	JJ	0	*	*
-Chromosome5	94355682	T	0	*	*	0	*	*	1	C	s	2	C.	se	1	.	j
-Chromosome5	94355763	G	0	*	*	0	*	*	1	A	s	2	A.	se	1	.	s
-Chromosome5	94355777	G	0	*	*	0	*	*	1	A	s	2	A.	o`	1	.	s
-Chromosome5	94355787	A	0	*	*	0	*	*	1	T	k	2	T.	oj	1	.	o
-Chromosome5	94355943	G	0	*	*	0	*	*	1	A	J	1	.	A	2	A.	sF
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-Chromosome5	94356071	A	0	*	*	0	*	*	1	g	J	2	.$g	W<	1	,	J
-Chromosome5	94356170	T	0	*	*	0	*	*	1	g	J	1	,	F	2	,G	JJ
-Chromosome5	94356171	A	0	*	*	0	*	*	1	g	J	1	,	A	2	,G	JJ
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-Chromosome5	94356204	A	0	*	*	0	*	*	1	g	J	1	,$	>	2	,$G	>J
-Chromosome5	94387759	G	2	..	JJ	1	A	J	0	*	*	3	.A.	JAF	0	*	*
-Chromosome5	94387823	G	2	..	<J	1	A	J	0	*	*	3	.A.	FFJ	0	*	*
-Chromosome5	94387840	T	1	.	J	1	G	J	0	*	*	3	.G.	JeF	0	*	*
-Chromosome5	94387857	G	1	.	e	1	A	J	0	*	*	3	.A.	Jo<	0	*	*
-Chromosome5	94387869	T	2	..	7s	1	C	J	0	*	*	3	.C.	AjF	0	*	*
-Chromosome5	94399671	C	0	*	*	2	.-1A.-1A	GG	1	.-1A	G	2	.-1A.-1A	G7	0	*	*
-Chromosome5	94452255	T	1	.-5TACAG	<	0	*	*	1	.	J	1	.-5TACAG	<	0	*	*
-Chromosome5	94453391	C	1	.	J	0	*	*	1	.-2TT	F	0	*	*	1	.-1T	D
-Chromosome5	94564479	A	0	*	*	1	.	J	1	C	J	4	g...	JJJJ	0	*	*
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-Chromosome5	94564596	G	0	*	*	1	a	J	1	,	J	3	.a,	oJJ	0	*	*
-Chromosome5	94564670	A	0	*	*	1	t	J	1	,	J	3	,t,	JJJ	0	*	*
-Chromosome5	94585861	T	1	,-3atc	A	1	,-3atc	A	0	*	*	1	,	J	0	*	*
-Chromosome5	94812088	C	3	.T.	AJJ	0	*	*	3	...	F7J	0	*	*	4	.TT.	AFJJ
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-Chromosome5	94979470	C	0	*	*	3	T.T	JJJ	1	.	F	0	*	*	1	T	J
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-Chromosome5	95072467	C	2	,t	JJ	1	t	J	0	*	*	0	*	*	1	,	F
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-Chromosome5	95266232	G	2	,-1a,	77	1	,-1a	A	1	,-1a	<	1	,	F	2	,-1a,-1a	<F
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-Chromosome5	95518969	C	2	.T	FJ	1	T	s	3	T.T	FsA	0	*	*	1	.	J
-Chromosome5	95520708	C	1	.	J	0	*	*	1	A	J	0	*	*	5	...A.	JJJFJ
-Chromosome5	95520899	A	1	,-1t	J	0	*	*	2	,-1t,-1t	JJ	0	*	*	5	,-1t,-1t,-1t,,	JJFJJ
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-Chromosome5	95534738	G	2	..	JJ	4	A...	JJsJ	0	*	*	4	..A.	JJJJ	4	A.A.	FJJJ
-Chromosome5	95534802	G	2	..	ss	4	A..A	soss	0	*	*	4	..A.	ssss	4	..A.	oo\s
-Chromosome5	95534834	C	2	..	ss	4	..T.	ssss	0	*	*	4	T.T.	ssss	4	T...	ojfj
-Chromosome5	95534908	C	2	,,	JJ	3	,,a	JJJ	0	*	*	3	,,t	FJJ	4	,t,,	JJFJ
-Chromosome5	95703861	T	0	*	*	1	.	J	2	.+1G.	sJ	0	*	*	1	G	s
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-Chromosome5	95722191	C	1	T	F	0	*	*	1	.	J	2	.T	JJ	0	*	*
-Chromosome5	95722390	A	1	g	J	0	*	*	1	,	J	2	g,	JJ	0	*	*
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-Chromosome5	95801649	A	0	*	*	1	G	s	6	G.....	kosojo	0	*	*	2	..	so
-Chromosome5	95801678	T	0	*	*	1	c	J	6	,cccc,	JJJJJA	0	*	*	2	,$c	?J
-Chromosome5	95817439	T	1	G	s	0	*	*	1	.	J	2	,C	JJ	0	*	*
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-Chromosome5	96080031	C	0	*	*	1	.	s	1	T	s	0	*	*	2	T.	js
-Chromosome5	96080949	C	0	*	*	2	..	JJ	1	T	7	0	*	*	2	.T	JJ
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-Chromosome5	96200866	A	1	G	J	0	*	*	3	G..	JJJ	0	*	*	1	.	F
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-Chromosome5	96483320	C	0	*	*	2	G.	Jj	1	G	F	0	*	*	1	.	7
-Chromosome5	96483641	G	0	*	*	1	,-2ta	F	1	,-2ta	J	0	*	*	1	,-2ta	F
-Chromosome5	96651955	C	1	.	s	0	*	*	3	.T.	ss`	3	.T.	sse	4	...T	sVss
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-Chromosome5	96755730	G	2	,-1a,-1a	F<	0	*	*	1	,-1a	J	1	,-1a	J	1	,	J
-Chromosome5	96774986	C	0	*	*	1	.	J	1	.-3TAT	J	1	.-3TAT	F	0	*	*
-Chromosome5	96782695	G	0	*	*	1	.	J	1	.-5GAGAC	6	1	.-5GAGAC	6	0	*	*
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-Chromosome5	96811886	T	2	c,	FJ	2	cc	AJ	3	.cc	eJJ	6	c,cccc	JJJFFJ	8	a,,ccccc	JJ<JAJF7
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-Chromosome5	96924270	G	0	*	*	1	,-1c	=	1	,-1c	7	1	,	J	0	*	*
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-Chromosome5	97053509	T	2	.C	FJ	0	*	*	2	C.	JJ	0	*	*	1	.	J
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-Chromosome5	97810794	T	1	C	J	0	*	*	0	*	*	1	.	J	2	.C	FJ
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-Chromosome5	97846313	C	2	,-3atg,-3atg	FJ	0	*	*	2	,-3atg,-3atg	JC	1	,-3atg	J	4	,-3atg,-3atg,-3atg,	JJJJ
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-Chromosome5	97925558	A	1	,	J	5	,,,c,	JJFJJ	5	cc,ct	JJJJJ	7	,,,cctt	JJJFJAJ	3	ccc	JJJ
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-Chromosome5	98234630	C	1	T	`	0	*	*	3	T,T	eJs	1	,	J	0	*	*
-Chromosome5	98237298	T	2	.+2AG.+2AG	JJ	2	,+2ag.	s7	5	.+2AG.+2AG.+2AG..+2AG	JJJJJ	2	.+2AG.+2AG	JJ	7	,+2ag.+2AG.+2AG.+2AG.+2AG.+2AG.+2AG	sJJJJJJ
-Chromosome5	98237307	C	2	.-8ATATTAGT.-8ATATTAGT	JJ	2	,-8atattagt.	sF	5	.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT..-8ATATTAGT	JJJJF	2	.-8ATATTAGT.-8ATATTAGT	AJ	7	,-8atattagt.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT	s7JJJJJ
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-Chromosome5	98268373	G	0	*	*	1	T	J	0	*	*	2	T.	JJ	1	.	J
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-Chromosome5	98300205	T	0	*	*	0	*	*	4	CCCC	JJJJ	2	.C	JJ	2	C.	JJ
-Chromosome5	98300210	A	0	*	*	0	*	*	4	GGGG	JJJJ	2	.G	JJ	2	G.	JJ
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-Chromosome5	98354196	G	2	T.	JJ	1	.	F	2	.T	JJ	0	*	*	0	*	*
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-Chromosome5	98989255	C	1	T	J	1	.	J	0	*	*	2	T.	<J	0	*	*
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-Chromosome5	99108743	C	2	T.	JF	1	T	F	0	*	*	0	*	*	1	.	F
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-Chromosome5	99109009	G	2	a,	JJ	2	.a	sJ	0	*	*	0	*	*	1	,	F
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-Chromosome5	99109068	C	2	t,	JJ	2	.t	s@	0	*	*	0	*	*	1	,	J
-Chromosome5	99109082	G	2	a,	FF	2	aa	FF	0	*	*	0	*	*	1	,	F
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-Chromosome5	99221634	A	3	T.T	JJF	1	T	J	0	*	*	0	*	*	1	.	F
-Chromosome5	99221660	C	3	T.T	JJF	1	T	J	0	*	*	0	*	*	1	.	F
-Chromosome5	99221669	G	3	C.C	JJJ	1	C	J	0	*	*	0	*	*	1	.	J
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-Chromosome5	99296668	T	1	a	J	0	*	*	2	ag	FF	0	*	*	1	g	J
-Chromosome5	99468979	C	0	*	*	3	.AT	sJJ	1	.	J	3	TT.	Jss	1	T	J
-Chromosome5	99476547	T	0	*	*	2	G.	JJ	0	*	*	2	..	JF	3	G.G	JJJ
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-Chromosome5	145779463	G	0	*	*	2	..	JJ	1	T	J	2	AC	FF	1	A	J
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-Chromosome5	180179882	G	2	..	JJ	7	...-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.	JJ=JJ=F	116	.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA........-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA	===J====J=J=JA=JJF======J=J=<JoJJJj==JJ====J=J==JJ==J==<=====JoJ=J=========J=JJJ===YJ===J===J====J=JJ=JJ===JJ==J==J=	21	.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.......	====J=JJ=JJJ==JJJJJJF	67	..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA......-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..	s==========J=J====J=J==JJJ=J=J===JJJF====A==J=F<==<<====JJJJJ====JJ
-Chromosome5	180180020	A	2	,,	JJ	7	,,,,,,,-1t	JJJJAJJ	115	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,+1t,,..,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,	AJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJssJJJJJJJJJJJJJJJJ7JJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJFJF	20	,,,,,,,,,,,+1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t	JJJJJJJJJJJJJJJJJJJJ	65	,,,,,,,,,,,,,,,,,,,,,,+1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t	JJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJ<JJJJJJJJJF
-Chromosome5	180197439	T	0	*	*	1	C	s	0	*	*	3	C..	oss	1	.	f
-Chromosome5	180197470	C	0	*	*	1	T	s	0	*	*	3	T..	jss	1	.	o
-Chromosome5	180232992	A	1	T	J	0	*	*	1	.	J	0	*	*	2	.T	JJ
-Chromosome5	180394863	T	0	*	*	2	.a	`J	1	.	F	2	.a	sJ	0	*	*
-Chromosome5	180394912	G	0	*	*	2	,,	JJ	2	.a	7J	2	A,	sJ	0	*	*
-Chromosome5	180394927	T	0	*	*	2	,c	JJ	1	,	F	2	.c	sJ	0	*	*
-Chromosome5	180465769	T	6	..C...	JJ<JJJ	3	C..	JJJ	6	...C..	JJAJJJ	4	..C.	JAJF	6	......	JJ<FJJ
-Chromosome5	180465832	C	5	,,t,,	<F7J<	3	,,t	F<;	6	tt,,,,	;7JJFJ	4	G,,,	`JJJ	6	,,t,,,	<J:<AF
-Chromosome5	180556891	C	1	.	J	0	*	*	2	G.	JJ	1	G	J	0	*	*
-Chromosome5	180556974	A	1	.	J	0	*	*	2	.-1T.	JJ	1	.-1T	F	0	*	*
-Chromosome5	180556983	G	1	.	J	0	*	*	2	A.	J<	1	A	J	0	*	*
-Chromosome5	180557007	G	1	.	J	0	*	*	2	C.	JF	1	C	A	0	*	*
-Chromosome5	180557094	T	1	,	J	0	*	*	2	a,	JJ	1	a	J	0	*	*
-Chromosome5	180557095	C	1	,	J	0	*	*	2	t,	JJ	1	t	J	0	*	*
-Chromosome5	180557110	A	1	,	<	0	*	*	2	t,	JJ	1	t	J	0	*	*
-Chromosome5	180557134	G	1	,	J	0	*	*	2	c,	JJ	1	c	J	0	*	*
-Chromosome5	180557135	T	1	,	J	0	*	*	2	c,	JJ	1	c	J	0	*	*
-Chromosome5	180715783	G	1	t	J	0	*	*	0	*	*	2	A,	sJ	1	.	s
-Chromosome5	180805266	G	1	,	J	1	T	\	0	*	*	2	T.	ss	0	*	*
-Chromosome5	180812167	C	0	*	*	0	*	*	1	t	J	2	.,	JJ	3	T..	JJJ
-Chromosome5	180812169	A	0	*	*	0	*	*	1	g	J	2	G,	J<	3	.GG	JJJ
-Chromosome5	180812202	G	0	*	*	1	A	A	2	,A	JJ	3	.,A	aJs	4	...A	7JJJ
-Chromosome5	180812224	C	0	*	*	1	T	J	2	,T	JF	3	A,.	jJs	3	AAT	F<J
-Chromosome5	180812227	G	0	*	*	1	A	<	2	,A	JJ	3	.a.	\Js	3	..A	JJJ
-Chromosome5	180812230	A	0	*	*	1	C	F	2	gC	JJ	3	GgG	oJs	3	TTC	JJJ
-Chromosome5	180812232	G	0	*	*	1	T	A	2	,T	JF	3	.,.	o<s	3	..T	JJJ
-Chromosome5	180812312	G	0	*	*	0	*	*	1	,	J	2	T,	`F	1	t	J
-Chromosome5	180813356	G	2	,c	JF	1	c	J	0	*	*	1	.	s	0	*	*
-Chromosome5	180813360	G	2	,t	JF	1	t	J	0	*	*	1	.	s	0	*	*
-Chromosome5	180813377	T	2	,g	FF	1	g	J	0	*	*	1	,	J	0	*	*
-Chromosome5	180813378	T	2	,g	JF	1	g	J	0	*	*	1	,	J	0	*	*
-Chromosome5	180813389	A	2	,c	FF	1	c	J	0	*	*	1	,$	A	0	*	*
-Chromosome5	180864623	G	2	.T	JJ	0	*	*	0	*	*	1	.	J	2	.T	JJ
-Chromosome5	180864626	A	2	.G	JJ	0	*	*	0	*	*	1	.	J	2	.G	JJ
-Chromosome5	180864640	G	2	.C	JJ	0	*	*	0	*	*	1	.	J	2	.C	JJ
-Chromosome5	180864641	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	2	.C	JJ
-Chromosome5	180864642	G	2	.T	JJ	0	*	*	0	*	*	1	.	J	2	.T	JJ
-Chromosome5	180864775	G	3	aa,	AFJ	0	*	*	0	*	*	2	.,	oJ	2	A.	WJ
-Chromosome5	180864780	G	2	a,	7J	0	*	*	0	*	*	2	.,	sJ	2	.a	JF
-Chromosome5	180864796	C	3	aa,	7JJ	0	*	*	0	*	*	2	.,	sJ	2	.a	jA
-Chromosome5	180864828	T	3	aa,	<AJ	0	*	*	0	*	*	2	.,	sJ	2	.a	jJ
-Chromosome5	180864837	A	2	c,	<J	0	*	*	0	*	*	2	.,	sJ	2	.c	VA
-Chromosome5	180864875	C	2	a,	JJ	0	*	*	0	*	*	2	,,	JJ	1	a	<
-Chromosome5	180864890	C	2	t,	JJ	0	*	*	0	*	*	2	,,	JJ	1	t	J
-Chromosome5	180866174	A	0	*	*	1	G	7	2	G.	JJ	3	...	J7J	0	*	*
-Chromosome5	180866317	A	0	*	*	1	g	J	2	g,	J<	4	.,,,	JFJ7	0	*	*
-Chromosome5	180866364	G	0	*	*	1	,	F	2	,a	JJ	2	t,	JJ	0	*	*
-Chromosome5	180926986	A	2	g,	JJ	1	G	s	0	*	*	0	*	*	1	,	<
-Chromosome5	181020652	A	2	.G	JJ	1	G	J	0	*	*	1	.	J	0	*	*
-Chromosome5	181020683	C	2	.T	JJ	1	T	J	0	*	*	1	.	J	0	*	*
-Chromosome5	181020684	T	2	.G	JJ	1	G	J	0	*	*	1	.	J	0	*	*
-Chromosome5	181020915	C	2	a,	FA	1	g	J	0	*	*	2	.,	sJ	0	*	*
-Chromosome5	181087961	G	1	,	A	0	*	*	1	a	J	0	*	*	2	a,	FJ
-Chromosome5	181090516	T	0	*	*	2	.,-3tgc	s:	1	,-3tgc	:	0	*	*	1	,-3tgc	:
-Chromosome5	181185099	T	0	*	*	0	*	*	1	.-1A	J	1	.	J	2	..-1A	JJ
-Chromosome5	181214822	G	0	*	*	1	A	s	0	*	*	1	.	a	2	A.	ss
-Chromosome5	181314641	A	0	*	*	0	*	*	1	,	A	1	G	s	2	G,	JA
-Chromosome5	181314646	A	0	*	*	0	*	*	1	,	F	1	G	s	2	G,	JJ
-Chromosome5	181314651	C	0	*	*	0	*	*	1	,	<	1	A	s	2	A,	JJ
-Chromosome5	181314673	C	0	*	*	0	*	*	1	t	F	1	.	s	2	.t	JF
-Chromosome5	181314682	T	0	*	*	0	*	*	1	,	J	1	C	s	2	C,	JJ
-Chromosome5	181314690	C	0	*	*	0	*	*	1	,	J	1	T	s	2	T,	JJ
-Chromosome5	181314694	C	0	*	*	0	*	*	1	,	J	1	G	s	2	A,	JF
-Chromosome5	181314698	C	0	*	*	0	*	*	1	,	F	1	A	s	2	A,	JJ
-Chromosome5	181314702	A	0	*	*	0	*	*	1	,	J	2	.+1T,+1t	JJ	2	.+1T,	IJ
-Chromosome5	181314716	C	0	*	*	0	*	*	1	t	F	1	A	s	2	A,	JJ
-Chromosome5	181314736	A	0	*	*	0	*	*	1	,	F	1	C	s	2	C,	sF
-Chromosome5	181390697	A	6	......	AJFAJ<	3	TT.	J<A	3	.TT	JFF	1	T	J	6	...TTT	J7JJJJ
-Chromosome5	181400992	G	4	,,,a	JJJ7	1	,	7	4	.Aa,	ss7F	5	,aa,,	JA7<J	4	,,aa	FFFA
-Chromosome5	181434998	A	0	*	*	1	.	s	0	*	*	2	.G	so	1	G	e
-Chromosome5	181434999	T	0	*	*	1	.	s	0	*	*	2	.C	so	1	C	k
-Chromosome5	181475566	G	9	...AA....	JJJFJJJ7<	3	..A	JJJ	9	.......A.	JJJJJFJJJ	3	A..	F<J	8	........	JFJJJJFF
-Chromosome5	181475591	T	7	C.C...C	J7JJFJJ	3	...	JJJ	9	.C.......	FAJJJJ<J<	3	.CC	JFJ	9	CC.C.C.CC	JJJJJFJJ7
-Chromosome5	181483273	C	2	AA	JJ	0	*	*	5	A..A.	JFJJJ	2	..	JJ	3	.A.	FJJ
-Chromosome5	181483718	G	3	,,,	JJJ	0	*	*	6	a,,,,,	JAJJJJ	3	a,,	CJJ	3	,a,	JAJ
-Chromosome5	181484631	C	1	A	o	1	.	J	4	A...	sFFJ	0	*	*	0	*	*
-Chromosome5	181979765	T	1	a	J	1	,	<	0	*	*	2	.a	sJ	0	*	*
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-Chromosome5	182024895	G	0	*	*	4	t,,,	JAJJ	1	,	J	0	*	*	2	at	JJ
-Chromosome5	182024917	T	0	*	*	4	a,,,	JJJJ	1	c	J	0	*	*	2	,a	JJ
-Chromosome5	182038861	G	1	T	s	2	.T	Js	0	*	*	0	*	*	2	..	ss
-Chromosome5	182154596	T	3	.C.	JJJ	1	.	J	2	.C	JJ	2	CC	JJ	0	*	*
-Chromosome5	182161623	T	3	.C.	JJJ	0	*	*	1	C	F	0	*	*	6	......	J77JF7
-Chromosome5	182214966	G	24	,,,,,,,,,,,,,,,a,,,,,,,,	FFFFFFFFAFFFFFFFFFFFFFFF	11	,,,,,,,,,,,	FFFFFFFFFFF	21	,,,,,,,,,,,t,,,,,,,,,	FAFFFFFFFFFFFFFFFF7FF	17	,,,,,a,,a,,tt,,,,	FFFFFFFFFFFFFFFFF	25	,,,,a,,,,,,,t,,,,,,,,,,,,	FFFFFFFFFFFFAFFFFFFFFFFFF
-Chromosome5	182276414	G	0	*	*	2	T.	JJ	0	*	*	1	.	s	1	T	A
-Chromosome5	182354951	G	1	,-1a	J	0	*	*	1	,-1a	F	0	*	*	2	,-1a,-1a	JF
-Chromosome5	182363128	A	3	,,G	FJJ	0	*	*	4	,GGG	FoJs	2	GG	ns	0	*	*
-Chromosome5	182363206	T	3	,,G	AAF	0	*	*	4	,GGG	Asos	2	GG	ss	0	*	*
-Chromosome5	182613052	G	0	*	*	3	..T	JJJ	1	A	J	0	*	*	1	.	J
-Chromosome5	182835538	C	0	*	*	1	.-4CGAT	Y	0	*	*	1	.-4CGAT	Y	1	.-4CGAT	Y
-Chromosome5	182844687	A	1	.-1C	F	1	.-1C	<	0	*	*	0	*	*	1	.-1C	J
-Chromosome5	183338587	G	1	C	F	0	*	*	0	*	*	2	..	JJ	4	..C.	JFJJ
-Chromosome5	183435289	C	1	.	J	1	A	J	2	A.	JJ	0	*	*	0	*	*
-Chromosome5	183435343	C	2	.-1T,	QA	1	,	A	1	.-1T	J	0	*	*	0	*	*
-Chromosome5	183435373	T	1	,	F	2	,a	FJ	2	gg	AJ	0	*	*	0	*	*
-Chromosome5	183435414	T	2	,,	JA	2	,g	JJ	1	g	F	0	*	*	0	*	*
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-Chromosome5	183435419	G	2	,,	JF	2	,c	JF	2	cc	FJ	0	*	*	0	*	*
-Chromosome5	183435421	A	2	,,	JF	2	,t	JJ	2	tt	FJ	0	*	*	0	*	*
-Chromosome5	183435422	T	2	gg	JJ	2	ga	JJ	2	aa	JJ	0	*	*	0	*	*
-Chromosome5	183435423	A	2	,g	JF	2	g,	JJ	2	,,	JJ	0	*	*	0	*	*
-Chromosome5	183435456	C	2	,,	J7	2	,t	JJ	2	tt	JJ	0	*	*	0	*	*
-Chromosome5	183436412	C	1	.-2GG	J	0	*	*	1	T	J	1	.	F	0	*	*
-Chromosome5	183462004	C	0	*	*	1	.-6ATTATT	J	2	.-6ATTATT.-6ATTATT	FJ	0	*	*	1	.	F
-Chromosome5	183591766	A	0	*	*	0	*	*	1	.-4CGGC	j	1	,	o	1	.-4CGGC	s
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-Chromosome5	221020664	T	9	ccc,,,,,,	JJJJJJFJJ	1	,	J	7	,,,,,c,	JJJJJJJ	5	c,,,c	JJJJJ	11	,,,cccccc,,	JFJJJJJJJJJ
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-Chromosome5	229485280	C	0	*	*	1	,	J	0	*	*	2	t,	JJ	2	tt	JJ
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-Chromosome5	229489581	T	2	.C	FF	0	*	*	1	C	J	0	*	*	1	.	F
-Chromosome5	229515247	A	3	..C	sJJ	0	*	*	1	.	J	0	*	*	1	C	J
-Chromosome5	229515333	G	3	..C	sJJ	0	*	*	1	.	J	0	*	*	1	C	J
-Chromosome5	229515492	T	2	,g	JJ	0	*	*	0	*	*	1	.+7GGGAAAC	s	1	g	F
-Chromosome5	229542139	G	0	*	*	1	A	F	2	A.	7J	0	*	*	1	.	J
-Chromosome5	229605065	C	0	*	*	0	*	*	1	.	J	3	,Gg	Jss	1	G	s
-Chromosome5	229605093	T	0	*	*	0	*	*	1	.	J	2	.-3GTC,	Ss	2	.-3GTC.	SJ
-Chromosome5	229618139	G	1	.	n	0	*	*	0	*	*	1	A	J	2	A.	Js
-Chromosome5	229717300	G	2	.C	jJ	1	.	o	0	*	*	1	C	J	0	*	*
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-Chromosome5	229717351	G	2	T,	sJ	1	,	J	0	*	*	1	T	s	0	*	*
-Chromosome5	229717382	G	2	T,	sJ	1	,	J	0	*	*	1	T	s	0	*	*
-Chromosome5	229717399	G	2	T,	sJ	1	,	J	0	*	*	1	T	s	0	*	*
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-Chromosome5	229854261	G	1	C	J	0	*	*	1	.	J	0	*	*	2	C.	JJ
-Chromosome5	230492584	A	0	*	*	2	T.	JJ	1	T	J	1	.	J	0	*	*
-Chromosome5	230492779	T	0	*	*	2	a,	JJ	1	a	F	1	,	F	0	*	*
-Chromosome5	230598234	G	0	*	*	2	TT	AJ	0	*	*	1	.	J	3	.T.	JJJ
-Chromosome5	230598318	G	0	*	*	2	.+2TT.+2TT	FA	0	*	*	2	..+2TT	JJ	3	..+2TT.	JJJ
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-Chromosome5	230647516	G	0	*	*	0	*	*	2	.A	os	3	A..	sss	2	..	ss
-Chromosome5	230930685	T	1	.-1G	F	0	*	*	2	.-1G.-1G	JJ	0	*	*	1	.-1G	>
-Chromosome5	231012335	T	2	,c	JF	1	,	J	1	c	J	0	*	*	0	*	*
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-Chromosome5	231120475	T	0	*	*	2	..	os	4	...C	osso	2	C.	ss	2	.G	ss
-Chromosome5	231139817	G	0	*	*	1	A	F	2	A.	FF	1	,	k	0	*	*
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-Chromosome5	231360658	C	0	*	*	1	.-9CGGGACCGG	s	0	*	*	1	T	J	1	.	F
-Chromosome5	231387160	T	0	*	*	0	*	*	1	.	s	1	G	s	2	A.	as
-Chromosome5	231474973	C	4	,,aa	JJJJ	1	a	J	4	,,,,	JJJJ	4	,,aa	JJJJ	0	*	*
-Chromosome5	231485959	T	3	,,a	FJ<	3	,,,	FJJ	0	*	*	0	*	*	8	,,a,,,,,	JAJFJAJJ
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-Chromosome5	231643966	A	2	.T	JJ	0	*	*	1	T	J	0	*	*	1	.	J
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-Chromosome5	231643975	G	2	.A	JJ	0	*	*	1	A	J	0	*	*	1	.	J
-Chromosome5	231674353	A	0	*	*	1	G	J	1	.	J	0	*	*	2	G.	JJ
-Chromosome5	231689604	T	0	*	*	2	.G	JJ	1	.	J	0	*	*	2	GG	JJ
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-Chromosome5	231707975	T	0	*	*	1	c	F	2	,c	FF	2	,c	JJ	2	c,	JJ
-Chromosome5	231851818	A	0	*	*	0	*	*	1	.-4GATC	8	1	.-3GAT	6	1	.-3GAT	6
-Chromosome5	231865357	A	0	*	*	0	*	*	3	..-2ACG	JIs	1	.	7	2	GG	sj
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-Chromosome5	232047820	G	0	*	*	2	,C	JJ	0	*	*	2	.c	JJ	1	,	J
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-Chromosome5	232305374	C	0	*	*	2	T,	FJ	0	*	*	3	t,,	JAA	2	,.	JJ
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-Chromosome5	232665856	G	3	..A	JJJ	4	..A.	JJFJ	6	......	JJJJsJ	4	,A..	oJJJ	3	A..	<JJ
-Chromosome5	232669123	A	0	*	*	0	*	*	2	G.	JF	1	.	j	2	.T	JJ
-Chromosome5	232690313	T	1	A	J	0	*	*	2	.A	JJ	0	*	*	4	....	FJJJ
-Chromosome5	232690315	T	1	C	J	0	*	*	2	.C	JJ	0	*	*	4	....	JJJJ
-Chromosome5	232690472	C	1	t	J	0	*	*	2	,t	JJ	0	*	*	5	,,,,,	JJJFJ
-Chromosome5	232690507	C	1	,	J	0	*	*	2	a,	JJ	0	*	*	5	aa,aa	JJJJJ
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-Chromosome5	232848271	C	0	*	*	0	*	*	3	T..	JJJ	1	T	J	2	T.	JJ
-Chromosome5	232994732	G	4	,-1a,-1a,-1a,-1a	FJJJ	4	..,-1a,-1a	soJJ	6	,-1a,-1a,-1a,,,-1a	JJJJ7J	3	,-1a,-1a,-1a	JJJ	5	,-1a,-1a,-1a,-1a,-1a	JJJJJ
-Chromosome5	233085582	T	0	*	*	1	.	A	3	C,,	sJ7	0	*	*	2	CC	sJ
-Chromosome5	233085585	C	0	*	*	1	T	<	3	.tt	sJJ	0	*	*	2	..	sJ
-Chromosome5	233103191	A	0	*	*	0	*	*	1	,	J	2	g^],	<E	1	g	F
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-Chromosome5	233124198	G	0	*	*	1	.	J	3	.A.	Jos	0	*	*	1	C	J
-Chromosome5	233124204	A	0	*	*	1	T	_	3	CTC	Jss	0	*	*	1	C	J
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-Chromosome5	233126975	T	0	*	*	0	*	*	2	..	JJ	1	C	J	2	.C	JJ
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-Chromosome5	233127056	C	0	*	*	0	*	*	2	GG	JJ	1	T	`	2	GT	JJ
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-Chromosome5	233127115	G	0	*	*	0	*	*	2	cc	JJ	1	,	J	2	,c	JJ
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-Chromosome5	233377199	C	1	.	j	0	*	*	0	*	*	1	T	j	2	.T	`o
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-Chromosome5	233485837	G	0	*	*	1	A	J	1	.	J	0	*	*	2	.A	J<
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-Chromosome5	233485888	G	1	.	J	1	C	J	0	*	*	0	*	*	2	.C	FJ
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-Chromosome5	233809732	A	1	.-3CTG	G	0	*	*	0	*	*	1	.	J	1	.-3CTG	G
-Chromosome5	233809783	A	1	.-1T	s	0	*	*	0	*	*	1	.	J	1	.-1T	s
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-Chromosome5	234064362	C	0	*	*	3	..t	sJJ	2	,,	JJ	1	g	J	0	*	*
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-Chromosome5	234072721	T	0	*	*	1	,	J	1	,-1c	E	1	,-1c	E	0	*	*
-Chromosome5	234118552	C	1	.	J	0	*	*	3	GG.	JJJ	0	*	*	1	G	J
-Chromosome5	234118626	A	1	.	J	0	*	*	3	GG.	JJF	0	*	*	1	G	J
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-Chromosome5	234118764	A	1	,	J	0	*	*	3	cc,	JFJ	0	*	*	1	c	J
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-Chromosome5	234623680	C	0	*	*	1	.-2TT	>	1	.-2TT	>	0	*	*	1	.-2TT	>
-Chromosome5	234641950	C	1	g	J	0	*	*	2	,,	JF	2	g,	JJ	0	*	*
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-Chromosome5	234704736	A	0	*	*	0	*	*	1	,-1c	J	1	,-1c	J	2	,-1c,	JJ
-Chromosome5	234709510	C	0	*	*	1	,-2aa	F	2	,-2aa,-1a	JF	1	.	R	0	*	*
-Chromosome5	234711507	A	0	*	*	1	G	J	3	GG.	JJJ	2	..	JJ	0	*	*
-Chromosome5	234711572	A	0	*	*	1	G	e	3	GG.	aRo	2	..	sf	0	*	*
-Chromosome5	234711628	G	0	*	*	1	,-1a	J	3	a,,	AJF	2	,t	JJ	0	*	*
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-Chromosome5	234711687	C	0	*	*	1	g	<	3	agg	JJ7	2	,,	JJ	0	*	*
-Chromosome5	234758213	G	4	,,,,	JJJJ	6	,,,tt,	JJJJAA	16	,,,,,ttt,,,,,,,,	JAJJJJJJJJJAJJJF	4	,t,,	JJJJ	15	,,t,tt,,,,,,,,,	JJJJFJJJJJJJFJJ
-Chromosome5	234761079	C	3	.T.	JJA	3	.T.	oJJ	3	..T	JFJ	5	.A..T	7JsJJ	3	AA.	AJJ
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-Chromosome5	234770732	C	1	.	J	0	*	*	6	..AAAA	JJJJJJ	2	A.	JJ	5	AA.AG	FJJJA
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-Chromosome5	234792472	G	0	*	*	2	A.	JJ	3	.A.	JJJ	0	*	*	1	A	J
-Chromosome5	234792562	T	0	*	*	2	c,	JA	3	c,,	JFJ	0	*	*	1	,	F
-Chromosome5	234792628	G	0	*	*	2	,a	JJ	3	,a,	JJJ	0	*	*	1	,	J
-Chromosome5	234792632	G	0	*	*	1	,	J	3	,,a	JJJ	0	*	*	1	a	J
-Chromosome5	234792639	G	0	*	*	1	,	J	3	,,t	JJJ	0	*	*	1	t	J
-Chromosome5	234792658	C	0	*	*	2	,,	JJ	3	,,t	JJJ	0	*	*	1	t	J
-Chromosome5	234792669	G	0	*	*	2	,,	JJ	3	,,a	JJJ	0	*	*	1	a	J
-Chromosome5	234793326	G	1	A	J	1	.	J	2	.A	Js	0	*	*	0	*	*
-Chromosome5	234793367	C	1	.	J	1	T	J	2	.T	Js	0	*	*	0	*	*
-Chromosome5	234828689	C	20	........T...........	Asjsssooesss`VsjoseM	34	..................................	sssssaosjsssj`ooVsssosssoaosssos`e	89	.............................................T...........................................	osssfssojsosssssojsjo\joosssssssojssfossss`Ms\sooeoVesssssoojsooosjssRsosjsesoss\sossjVos	62	........................................*.....................	Rs`sJesossssssWossojsaVssfsossosjoosjoksmWfjssRssssaosHs\sojsj	76	..............................................A............................,	sssVsss`ossosssjssssosos`VjsssssssssssossejsssosssessssoosVsesoMsVossojsjsss
-Chromosome5	234828751	C	20	...................a	sksss\sjsss`sojjskWJ	34	.....A....................A.......	ssssoWssssosojWsVjssjsssoossssssj`	89	................................................................A........................	sjsoVsssVssssosssoosjMsojskefssossokeossssWMsVsosksMssssoosVasoosssVs\jjssfosossossososso	62	..............................................................	RsssassjossssVWsssosssossssRoosso`ssoeVssaosesRossososasWsess\	76	............................A..............................................,	sesRseskofossosossosVsssV`eooossssssssssskkssssjsssojssjss\ssss9jkssossssoss
-Chromosome5	234828756	C	20	...................,	sossssokssss\osVssjJ	34	............................T.....	oosssRssssjssooeRssjssososssossosa	89	......................................................................................A.T	ssj`esssossssssssoosaaoossssRsoosssoosesssWssRsssjsooossssssssjoossVsosossssssssjssss9ajo	62	.................TT.....................T.....................	fssssjssssssssRssVjjssossosRosssssssssosaookssasssosss\sVs`sos	76	....A......................................................................,	sssNssjMofjossessoksssjsosssosssjsssssssssessskssssssssososssos5sssssseossss
-Chromosome5	234828761	G	20	...................,	sksssjsossssosjjssIJ	34	....................T.............	osssefsossojsjssVsssesssoossssssV`	89	..T......................................................T...............................	soj`osssosssssssssssjjksssssosossessssssssf\sjsssososssoosssfssosssosVskskoesssssssssMojs	62	....................................T.........................	VsssjssssssossVssesssjossVsosjsssssssVjoossjssjsssjs`sosjo`oss	76	.......................................T....T..............................,	sssasssfjjsooossssssssssjWssssssssssossssj`sssjssssssssjssossssassssssssssss
-Chromosome5	234872924	G	1	.	s	0	*	*	1	a	F	0	*	*	2	,A	Js
-Chromosome5	234895909	G	1	.-2CA	:	1	.-2CA	;	0	*	*	1	.-2CA	:	0	*	*
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-Chromosome5	256727580	G	0	*	*	0	*	*	2	,+4tgta,+4tgta	:9	1	,+4tgtc	8	2	,+4tgtc,+4tgtc	88
-Chromosome5	256775027	A	0	*	*	5	.....	JsJJJ	3	..+3GAG.	J:s	3	..+3GAG.	J:J	0	*	*
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-Chromosome5	263906279	C	0	*	*	3	.GG	AJs	1	G	J	3	...	JJJ	0	*	*
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-Chromosome5	263906295	A	0	*	*	3	.C.	<JC	1	C	J	3	...	JJJ	0	*	*
-Chromosome5	263906584	G	0	*	*	2	t,	JJ	1	t	J	3	,,,	FJF	0	*	*
-Chromosome5	263906609	T	0	*	*	2	a,	JF	1	a	J	3	,,,	7F7	0	*	*
-Chromosome5	263906616	G	0	*	*	2	a,	JF	1	a	J	3	,,,	FJJ	0	*	*
-Chromosome5	263906625	G	0	*	*	2	a,	JA	1	a	J	3	,,,	JJJ	0	*	*
-Chromosome5	263906627	G	0	*	*	2	t,	J7	1	t	J	3	,,,	<JJ	0	*	*
-Chromosome5	263906635	G	0	*	*	2	a,	JF	1	a	J	3	,,,	AJJ	0	*	*
-Chromosome5	264030199	A	0	*	*	1	.-1T	J	1	.-1T	s	1	.-1T	s	0	*	*
-Chromosome5	264034526	C	1	,	J	1	t	A	0	*	*	0	*	*	3	g,,	8AJ
-Chromosome5	264091323	C	1	,	J	0	*	*	2	G.	JJ	1	T	f	0	*	*
-Chromosome5	264098708	A	1	.	F	0	*	*	1	T	J	2	T.	JF	5	TTT.T	JJJJA
-Chromosome5	264114160	C	0	*	*	1	.	o	2	.T	si	3	..*	jjE	0	*	*
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-Chromosome5	264528644	G	3	C..	JJJ	1	.	J	2	.C	JJ	1	C	J	0	*	*
-Chromosome5	264878001	C	1	t	A	3	..,	ssJ	5	,,,tt	J<7JJ	5	t,,,,	FJJJJ	4	,tt,	FJFJ
-Chromosome5	264912693	C	0	*	*	1	T	F	0	*	*	1	.	J	2	.T	AJ
-Chromosome5	264944249	G	1	A	J	0	*	*	2	.A	7J	1	.	J	0	*	*
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-Chromosome5	264944257	C	1	.-1A	J	0	*	*	2	..-1A	7J	1	.	J	0	*	*
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-Chromosome5	264944421	C	1	g	J	0	*	*	2	g,	JJ	1	,	F	0	*	*
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-Chromosome5	264952245	C	0	*	*	0	*	*	1	.-1A	J	1	.-1A	o	1	.	J
-Chromosome5	264993026	G	1	.	o	0	*	*	0	*	*	2	,A	ss	1	A	s
-Chromosome5	265001384	G	2	A.	ss	1	.	s	0	*	*	3	..a	oWF	0	*	*
-Chromosome5	265149987	G	0	*	*	1	,	F	3	ttt	JJJ	0	*	*	2	,t	JJ
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-Chromosome5	265253144	A	1	.	J	0	*	*	0	*	*	5	...C.	JJJJJ	1	C	J
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-Chromosome5	265496218	C	2	..	JJ	5	..T..	JJJJJ	4	T...	JJJJ	2	.T	JJ	5	..T..	JJJJF
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-Chromosome5	265621239	C	1	a	F	0	*	*	2	,,	JJ	0	*	*	4	,g,,	FJFJ
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-Chromosome5	265734412	G	0	*	*	1	A	J	4	.AA.	oJJJ	0	*	*	2	..	Jo
-Chromosome5	265734434	C	0	*	*	1	A	F	4	.AAA	sJJJ	0	*	*	2	A.	Js
-Chromosome5	265775613	A	19	.C...CC.....C...CCC	JFFJJJJJJAJJFJJJJJJ	10	..CC......	JJJJJFFJJJ	9	C.C.....C	JJJJAFJJJ	6	C.....	FJJJJA	20	.............C....C.	JJJFJJAJFJJJFJAJ<J<7
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-Chromosome5	266386913	A	1	.-2GT	J	0	*	*	0	*	*	1	.-2GT	J	2	.-2GT.	JJ
-Chromosome5	266386936	T	1	.-5GTACG	[	0	*	*	0	*	*	1	.-5GTACG	<	2	.-5GTACG.-5GTACG	[[
-Chromosome5	266586755	C	0	*	*	2	.+9GGAGGGGGT,	`W	1	,+9ggagagggt	J	1	t	J	0	*	*
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-Chromosome5	266984365	A	1	.-3TGT	J	0	*	*	1	.-3TGT	J	0	*	*	1	.-3TGT	F
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-Chromosome5	267511728	T	5	GG...	JJoAJ	7	..G....	VJJ\JsA	2	G.	Jo	7	,,.G.G,	osVJVJs	4	,GG.	\JJ6
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-Chromosome5	267522175	T	0	*	*	1	,-2tc	:	1	.	F	1	.-2TC	:	0	*	*
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-Chromosome5	267522315	T	2	,,	JJ	4	ccc.	JFJj	5	,,,c,	JJJF<	2	c,	JF	3	cc,	JJJ
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-Chromosome5	267624486	C	1	a	J	3	..T	JoV	0	*	*	0	*	*	3	...	Jos
-Chromosome5	267624491	G	1	,	J	3	A..	Jso	0	*	*	0	*	*	3	A..	Jjs
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-Chromosome5	267659349	G	3	,,,	7JA	2	,a	JJ	2	,a	JJ	4	,,a,	J7J<	3	,aa	JJ7
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-Chromosome5	267856751	T	0	*	*	2	.c	sJ	0	*	*	1	.	s	2	c,	JJ
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-Chromosome5	267914352	T	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,-2aa	J
-Chromosome5	267971212	C	0	*	*	3	..t	oos	1	.	W	0	*	*	1	T	o
-Chromosome5	267971265	C	0	*	*	3	AA,	ses	1	A	9	0	*	*	1	.	o
-Chromosome5	267974229	G	0	*	*	1	.-2CT	s	1	,-2ct	J	1	,-2ct	J	2	,-2ct,-2ct	JJ
-Chromosome5	268075626	C	1	.-1T	E	0	*	*	0	*	*	2	.-1T.-1T	FF	3	.-1T.-1T.-1T	HFF
-Chromosome5	268075763	T	1	,	F	0	*	*	0	*	*	2	,,-2tc	J5	3	,,,-2tc	J75
-Chromosome5	268075764	T	1	,	F	0	*	*	0	*	*	2	,*	JJ	3	,,*	JFJ
-Chromosome5	268075765	C	1	,	F	0	*	*	0	*	*	2	,*	JJ	3	,,*	AJJ
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-Chromosome5	268411339	G	0	*	*	0	*	*	1	.-1A	A	1	.	J	1	.-1A	J
-Chromosome5	268411785	A	0	*	*	0	*	*	1	,-1c	A	1	,	7	1	,-1c	J
-Chromosome5	268488716	A	0	*	*	1	C	<	1	.	<	2	.+1C.+1C	FH	0	*	*
-Chromosome5	268489143	C	0	*	*	1	,	J	2	,-3att,	JA	2	,-3att,-3att	JJ	0	*	*
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-Chromosome5	268557180	C	2	a,	<J	1	a	J	0	*	*	1	,	J	0	*	*
-Chromosome5	268687114	A	1	,	F	0	*	*	1	t	J	0	*	*	2	ct	JJ
-Chromosome5	269012162	G	1	.-1T	J	3	.+1T.T	FJs	0	*	*	0	*	*	1	.-1T	J
-Chromosome5	269012355	C	2	a,	JJ	2	,a	JJ	0	*	*	0	*	*	1	a	J
-Chromosome5	269015612	G	19	,,,,,,c,,,ccc,,,c,,	J7AFFFJJFJJJJJFJ<J7	6	C,.,,c	kAsJFJ	19	...c,,,,c,c,,,c,c,c	sssJAFJJJJJJ7JF<JF7	18	C,,C.,,,,,,,,,c,c,	oJJssF<JJJFFJJJJ7a	19	,,,,,,,,,ccccccc,,,	J7JFJJFFFJFJJJJJJAJ
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-Chromosome6	3494201	G	1	a	6	0	*	*	2	,,	JJ	0	*	*	2	,a	J7
-Chromosome6	3519184	T	1	C	V	2	**	ee	0	*	*	1	,	J	2	.C	kR
-Chromosome6	3535905	G	1	.	J	3	AA.	FJJ	2	.A	JJ	1	A	J	0	*	*
-Chromosome6	3535912	C	1	.	J	2	T.	FJ	2	.T	JJ	1	T	J	0	*	*
-Chromosome6	3535925	C	1	.	J	3	GG.	FJJ	2	.G	JJ	1	G	J	0	*	*
-Chromosome6	3535971	C	1	.	s	3	TT.	Fjs	2	.T	oq	1	T	q	0	*	*
-Chromosome6	3535988	A	1	.	o	3	CC.	Hfj	2	.C	Vo	1	C	s	0	*	*
-Chromosome6	3536016	A	1	,	J	3	CC.	9Rs	2	C,	sJ	1	C	s	0	*	*
-Chromosome6	3573742	C	1	,	F	0	*	*	2	,g	JJ	0	*	*	1	g	J
-Chromosome6	3573746	A	1	,	J	0	*	*	2	,g	7J	0	*	*	1	g	J
-Chromosome6	3574782	T	1	.	J	0	*	*	1	A	J	0	*	*	3	AA.	JJF
-Chromosome6	3579673	C	2	.T	JJ	0	*	*	0	*	*	1	.	A	1	T	F
-Chromosome6	3654284	C	0	*	*	1	.	J	0	*	*	4	T...	JJJJ	3	.T.	JJJ
-Chromosome6	3654296	T	0	*	*	1	.	J	0	*	*	5	C....	JJJJJ	3	.C.	JJJ
-Chromosome6	3654308	G	0	*	*	1	.	J	0	*	*	5	A....	JJJJJ	3	.A.	JJJ
-Chromosome6	3654343	T	0	*	*	1	.	s	0	*	*	5	C....	`oAoa	3	.C.	sso
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-Chromosome6	3654353	A	0	*	*	1	.	s	0	*	*	5	.-1T....	asosk	3	..-1T.	sss
-Chromosome6	3654387	G	0	*	*	1	.	s	0	*	*	5	..AA.	ssjsj	3	A..	sss
-Chromosome6	3654392	C	0	*	*	1	.	s	0	*	*	5	T....	ossss	3	.T.	sso
-Chromosome6	3654399	C	0	*	*	1	.	o	0	*	*	5	.T...	ssoss	3	..A	sso
-Chromosome6	3654404	T	0	*	*	1	.	s	0	*	*	5	A....	`sssj	3	.A.	sss
-Chromosome6	3654412	C	0	*	*	1	.	o	0	*	*	5	....T	sssoj	3	.A.	ssk
-Chromosome6	3718630	C	1	.	A	0	*	*	1	T	J	0	*	*	2	T.	JJ
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-Chromosome6	3936842	C	1	.	A	2	.T	JJ	0	*	*	1	T	J	0	*	*
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-Chromosome6	4079386	T	1	G	J	0	*	*	1	.	J	0	*	*	2	G.	JJ
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-Chromosome6	11872678	G	2	.T	JJ	3	..C	JJJ	1	.	J	2	.C	JJ	0	*	*
-Chromosome6	11872793	G	2	,,	77	4	,,A,	JJs7	0	*	*	2	,a	JJ	0	*	*
-Chromosome6	12033970	A	2	.G	AA	0	*	*	2	..	JF	0	*	*	3	.G.	JJ7
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-Chromosome6	15345980	C	50	......,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	CssosjAFJ<JJJJJJJJJJJAFJJ7JAJJJJ<JJJJJJJJAFJJFJJJJ	60	....,.,.,...,,.,.,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,t,,,,	sfsaAsssJssoJFsJsJJFAJJJJJ7JJJJFJFJJJJ<JJJJJFJJFJJFJFJJJJ7JA	72	..,,,.....,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,	sjJJJssassFsJJJJJJJJFJJJJJJJJJFJJJJJJJJJJJJJJJFJJJJJFJJF<JJJ7JJJAFJJJJJF	41	.,,......,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,	sJJsossssJ7JJJJJFJJJFJJFJJFJFJJJJFJJJJAAA	89	.$......,,,,.,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	<ssssRsJJJJJFJFJJJF7JJ<FJFJFJFJJJJJJJJFJJJFJJJJJJJJJJFJJJJJJAJJJJJFJJJJJJJJJJJJJJJJJJJJJJ
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-Chromosome6	23647465	G	0	*	*	0	*	*	2	,a	JJ	1	a	J	1	,	J
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-Chromosome6	23712651	A	1	,-1t	<	2	,-1t,-1t	JJ	2	,-1t,-1t	JJ	1	,-1t	F	0	*	*
-Chromosome6	23815442	C	0	*	*	2	.T	JJ	1	.	o	1	T	s	0	*	*
-Chromosome6	23815458	G	0	*	*	2	.A	JA	1	.	j	1	A	s	0	*	*
-Chromosome6	23815523	C	0	*	*	2	.A	Ja	1	,	J	1	A	s	0	*	*
-Chromosome6	23815528	C	0	*	*	2	.T	Fo	1	,	J	1	T	Q	0	*	*
-Chromosome6	23962162	A	10	,-2tt,-1t,,,t,,+2tt,,+1t	JJJJJJJJJJ	13	..,-1t,,,t,tt,+1t,.	ssJFJJJFJFJJs	18	.,,,,,,,,,,+1t,,+3ttt,,,,-1t,	jJJJJJJJJJJFJJJJss	6	.,,,,.	VJJJFj	24	...,,t,,,,,,,,,,,,,,,,,,	sssJJJJJJJJJJJJJJJJJJJJJ
-Chromosome6	24413264	T	3	.C.	JJJ	3	...	JJJ	3	C..	FJJ	0	*	*	3	.C.	JJJ
-Chromosome6	24739831	T	1	.-1C	H	1	.-1C	H	0	*	*	0	*	*	2	.-1C.-1C	HH
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-Chromosome6	25027267	C	4	..TT	JJJJ	2	TA	oJ	0	*	*	0	*	*	2	.A	JJ
-Chromosome6	25117287	G	2	.-5CTACC.-5CTACC	JJ	1	.-5CTACC	J	0	*	*	0	*	*	1	.-5CTACC	F
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-Chromosome6	31662771	G	3	aa,	FJF	0	*	*	1	,	J	1	a	J	0	*	*
-Chromosome6	31679887	C	2	,,	JJ	0	*	*	2	t,	JJ	0	*	*	1	t	J
-Chromosome6	31749326	C	5	,,,t,	JJJJJ	1	,	7	4	,t,,	A7J7	0	*	*	6	,,,,,t	F<JJJF
-Chromosome6	31749392	C	5	tt,tt	JJJJJ	1	t	A	3	tt,	JJ7	0	*	*	6	t,t,tt	JJJJJ<
-Chromosome6	31751623	T	0	*	*	0	*	*	3	.-1A.-3AAA.	JAJ	2	.-1A.	FF	1	.-1A	J
-Chromosome6	31822439	G	2	A.	JJ	0	*	*	0	*	*	1	A	J	1	.	J
-Chromosome6	31822474	T	2	G.	A7	0	*	*	0	*	*	1	G	J	1	.	F
-Chromosome6	31822614	C	2	t,	JJ	0	*	*	0	*	*	2	T,	VJ	1	,	J
-Chromosome6	31822645	G	2	t,	FJ	0	*	*	0	*	*	2	T$,	RJ	1	,	J
-Chromosome6	31892462	C	1	,-1t	J	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*
-Chromosome6	31976858	G	0	*	*	2	.A	Js	0	*	*	1	.	o	1	A	o
-Chromosome6	32012853	T	1	,	F	2	,,-5gggag	JF	0	*	*	0	*	*	1	.-5GGGAG	s
-Chromosome6	32016211	G	0	*	*	0	*	*	1	.	J	2	.T	Fs	2	TT	7F
-Chromosome6	32191943	A	1	.	J	2	.G	JF	1	G	J	0	*	*	0	*	*
-Chromosome6	32191983	C	1	A	J	2	.*	JJ	1	.	J	0	*	*	0	*	*
-Chromosome6	32244504	G	1	a	J	0	*	*	2	,a	FF	4	,,,a	AFJJ	4	,,,,	JJJJ
-Chromosome6	32303012	A	2	G.	JJ	1	.	J	2	CG	JJ	0	*	*	0	*	*
-Chromosome6	32303251	C	2	,-1a,-1a	JJ	1	,-1a	J	1	,-1a	J	0	*	*	0	*	*
-Chromosome6	32741478	T	0	*	*	2	.C	JJ	2	.C	sJ	1	C	F	0	*	*
-Chromosome6	32741508	C	0	*	*	2	.T	J<	2	.T	sJ	1	T	7	0	*	*
-Chromosome6	32760816	C	2	,,-1a	JJ	1	,-1a	J	0	*	*	1	,	F	1	,-1a	J
-Chromosome6	32923500	G	2	,t	JF	1	t	F	0	*	*	0	*	*	2	t,	JJ
-Chromosome6	33027686	T	2	.-1C.-1C	JJ	0	*	*	1	.-1C	J	2	.-1C.-1C	FJ	0	*	*
-Chromosome6	33190764	G	0	*	*	0	*	*	2	..	JJ	2	.A	JJ	1	A	J
-Chromosome6	33264294	G	1	A	s	1	,	J	0	*	*	2	A.	os	0	*	*
-Chromosome6	33438056	C	0	*	*	0	*	*	2	t,	AJ	1	,	J	1	T	O
-Chromosome6	33524795	G	1	a	F	1	.	o	0	*	*	0	*	*	3	.aa	sF7
-Chromosome6	33531169	G	1	A	J	0	*	*	2	.A	J7	0	*	*	2	..	JF
-Chromosome6	33619090	G	1	.-2AA	J	1	.	J	0	*	*	0	*	*	1	.-1A	J
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-Chromosome6	33619213	A	0	*	*	1	.	J	0	*	*	2	*,	rJ	1	*	I
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-Chromosome6	33619216	A	0	*	*	1	.	F	0	*	*	2	*g	rJ	1	*	I
-Chromosome6	33727537	A	2	..+1G	JJ	4	.+1G.+1G.+1G.	J7FF	0	*	*	3	.+5GGGGG.+3GGG.+2GG	JFJ	5	.+2GG.+1G..+2GG.+7GGGGGGG	FJJJJ
-Chromosome6	33758514	A	1	,-1t	J	0	*	*	1	,-1t	J	2	,-1t,-1t	JJ	0	*	*
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-Chromosome6	33773193	G	0	*	*	0	*	*	3	a,,	JJF	1	A	o	2	,,	JJ
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-Chromosome6	33773201	G	0	*	*	0	*	*	3	,aa	JFJ	1	.	s	2	aa	J7
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-Chromosome6	33773229	A	0	*	*	0	*	*	3	,gg	JJJ	1	.	s	2	g,	JJ
-Chromosome6	34115239	A	1	T	J	0	*	*	3	..T	JJJ	1	.	J	3	..T	JFJ
-Chromosome6	34349634	T	0	*	*	1	C	J	2	.C	JJ	1	.	J	0	*	*
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-Chromosome6	34508365	G	0	*	*	1	A	J	1	.	J	0	*	*	3	A..	JFJ
-Chromosome6	34637880	T	0	*	*	2	a,	JJ	1	a	J	2	,,	JJ	0	*	*
-Chromosome6	34637884	T	0	*	*	2	c,	JJ	1	c	J	2	,,	JJ	0	*	*
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-Chromosome6	34710474	A	1	,-4agct	@	0	*	*	1	,-4agct	@	1	,	J	0	*	*
-Chromosome6	34723262	C	2	t,	JJ	1	,	J	0	*	*	0	*	*	1	t	J
-Chromosome6	34723272	G	2	c,	JJ	1	,	J	0	*	*	0	*	*	1	c	A
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-Chromosome6	34849594	T	1	.-1A	<	1	.-1A	<	0	*	*	0	*	*	2	.-1A.	JJ
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-Chromosome6	34849988	A	1	g	J	2	,g	JF	0	*	*	0	*	*	2	,,	JJ
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-Chromosome6	35497682	A	0	*	*	2	.T	Js	1	.	J	1	T	J	0	*	*
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-Chromosome6	35791750	A	0	*	*	1	g	J	1	,	J	0	*	*	3	g,,	8FF
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-Chromosome6	36014110	C	1	T	s	1	.	o	3	TT.	sjJ	0	*	*	0	*	*
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-Chromosome6	36602331	T	3	C..	GsA	0	*	*	2	.C	sF	1	C	G	3	..C	FFF
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-Chromosome6	36728447	A	1	.-4TGAT	[	0	*	*	1	.-4TGAT	[	1	.	P	0	*	*
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-Chromosome6	37544523	C	0	*	*	1	.-3CTT	Y	1	.-3CTT	Y	0	*	*	1	.-3CTT	Y
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-Chromosome6	37858196	G	15	.............AA	JJJJJJJJJJJJJJJ	8	...A....	FJJJJ8JJ	18	.A................	JJJJJJJJJJJJJ<JJJJ	11	...........	JFJJJJJJJJJ	17	....A............	JJJJJJJJFJJJJJJJJ
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-Chromosome6	38030852	T	1	.	J	0	*	*	2	cC	sJ	0	*	*	2	.C	JJ
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-Chromosome6	39315654	G	3	.C.	JJJ	1	.	J	0	*	*	2	CC	JJ	2	.C	JJ
-Chromosome6	39316961	C	0	*	*	1	.	s	2	,g	J<	1	g	J	0	*	*
-Chromosome6	39423174	T	79	CCc.ccc,,c,ccc,cccc,,ccc,,,c,ccc,,,ccc,,cc,cc,ccccc,,ccc,,cc,cc,ccccccccccccccc	esJsJJJJJ7JFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJ<JFJJJJJJJJJJJJJJJJJJJJJFJJJJJss	141	C$,cccc,cc,,,,,c,cccccc,,c,c,,,ccc,ccc,ccccc,,cc,,c,,cccccccc,ccc,,c,cc,c,,ccc,ccc,c,,,,,ccc,ccc,,c,c,cccc,cc,ccccc,ccc,cccc,ccc,,ccc,CcCCcCC.	JFAJJFJJJJJJJJJJFJJJJJJFFJFJJJJJJJJJJJJAJJJJJJF7JJJJJJJJJJJJJAJFJ<JFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJoJo`Jsso	169	.cc.,ccc,,c,cc,,,cc,ccc,ccccccccccccc,c,cccccccccccc,,cc,,ccc,c,c,ccccccc,,,,cccccccccc,cc,cccccccc,ccc,,,cc,ccccc,,cc,,ccc,cccc,,,c,c,,,ccc,,c,,c,ccccccccccccc,,cc.,C.C	sJJsJJJFJJJJJJJJAJJJJJFJJJJJJJJJFJFJJJJ<JJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJFJJJJJJJJJJJAJJJJJJJJJJJJJJAJJFJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJo7oFsss	174	C$.C,,CccCc,C,c,ccc,Cc,cc,c,c,ccc,c,,cccc,,ccc,cc,c,,,cccccc,,cccc,,cccccc,c,,,cc,,ccccc,ccccc,,ccc,,,cc,cccc,,cc,,ccccc,c,,,ccc,ccccc,c,cc,c,ccccc,ccc,,,cc,c,cccc,,C,,.CCCccC	JofF<sJJ\JJsJFJJFJFsJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF7JJJJJFFJJJJJJJFJJJJJJJJJJJJJJJJJJAJJJ<JJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJossssssJos	150	cc,,cccc,cccccccc,c,ccccccc,c,c,,cc,c,ccc,,cccc,cc,cccc,cccccccccc,c,c,cccccc,c,cccccccccccc,ccc,c,cc,cc,c,ccccc,,ccccc,ccc,ccccccc,,,cc,cccccccc,CCcc	JJJJJFJJFJJFJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJ<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJAJJJJJJFJJFJJJJ<JJJJJJJJJJJJJAJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJsRFA
-Chromosome6	39423443	G	2	.-2AA.-2AA	dW	0	*	*	0	*	*	1	.-2AA	[	2	.-2AA.-2AA	[W
-Chromosome6	39453233	A	0	*	*	1	g	J	2	,g	JJ	1	,	F	0	*	*
-Chromosome6	39453252	T	0	*	*	1	c	J	2	,c	AJ	1	,	A	0	*	*
-Chromosome6	39693205	T	2	.C	JJ	0	*	*	1	.	F	1	C	F	0	*	*
-Chromosome6	39730740	A	1	.-9CGCCAGCAC	8	0	*	*	1	.-9CGCCAGCAC	8	0	*	*	1	.-9CGCCAGCAC	D
-Chromosome6	39803156	G	1	,-8caacattt	J	0	*	*	0	*	*	1	,-8caacattt	J	1	.-8CAACATTT	s
-Chromosome6	39824216	A	3	,$,$c	>>J	0	*	*	4	C...	JAAA	1	C	s	0	*	*
-Chromosome6	39824258	C	1	,	J	0	*	*	3	.-3GGT..	9JJ	1	.-3GGT	o	0	*	*
-Chromosome6	39824524	C	0	*	*	1	.	\	0	*	*	1	T	J	4	TTT.	JA7J
-Chromosome6	39912612	A	1	.-1G	7	1	.-1G	J	0	*	*	0	*	*	1	.-1G	F
-Chromosome6	39913717	C	2	T,	JJ	1	t	s	0	*	*	1	.	J	0	*	*
-Chromosome6	39913737	G	2	C,	FA	1	t	s	0	*	*	1	.	A	0	*	*
-Chromosome6	39913754	C	2	T,	JJ	1	t	s	0	*	*	1	.	o	0	*	*
-Chromosome6	39913781	C	2	T,	JJ	1	*	s	0	*	*	1	.	s	0	*	*
-Chromosome6	39975066	A	0	*	*	0	*	*	2	.-1C.-1C	JJ	1	.-1C	F	1	.-1C	J
-Chromosome6	40061545	T	1	,-1g	F	0	*	*	0	*	*	1	,	J	1	,-1g	J
-Chromosome6	40070999	T	0	*	*	2	,A	Fs	2	,G	Js	2	.g	s7	0	*	*
-Chromosome6	40071005	G	0	*	*	2	,C	Js	2	,A	Js	1	.	s	0	*	*
-Chromosome6	40071009	T	0	*	*	2	,C	Js	2	,C	Js	1	.	s	0	*	*
-Chromosome6	40071022	C	0	*	*	2	a.	Js	2	a.	Js	2	.,	s7	0	*	*
-Chromosome6	40071027	T	0	*	*	2	,C	Js	2	,C	Jo	2	.c	sJ	0	*	*
-Chromosome6	40071037	C	0	*	*	2	,T	Js	2	,T	Js	1	.	s	0	*	*
-Chromosome6	40071228	G	1	A	s	0	*	*	2	A.	as	0	*	*	1	.	s
-Chromosome6	40075319	T	0	*	*	1	.-1G	J	1	.-1G	J	0	*	*	1	.	J
-Chromosome6	40129093	A	0	*	*	1	,	k	2	,-1t,-1t	MM	0	*	*	1	.-1T	M
-Chromosome6	40194679	T	4	,ccc	JJJJ	1	c	J	2	c,	JJ	0	*	*	5	.,,,c	sFFJJ
-Chromosome6	40385506	C	1	T	A	2	A.	JJ	0	*	*	0	*	*	1	.	J
-Chromosome6	40385510	T	1	.	J	2	..-1G	JJ	0	*	*	0	*	*	1	.-1G	J
-Chromosome6	40385511	G	1	.	F	2	.*	JJ	0	*	*	0	*	*	1	*	J
-Chromosome6	40385551	C	1	T	J	2	T.	JJ	0	*	*	0	*	*	1	.	J
-Chromosome6	40385564	G	1	.	A	2	.A	JJ	0	*	*	0	*	*	1	A	J
-Chromosome6	40385575	C	1	.	F	2	.G	JA	0	*	*	0	*	*	1	G	J
-Chromosome6	40385641	C	1	A	@	2	.t	sJ	0	*	*	0	*	*	1	t	J
-Chromosome6	40385709	G	1	,	F	2	a,	JJ	0	*	*	0	*	*	1	a	A
-Chromosome6	40675865	G	2	A.	JF	1	.	s	0	*	*	1	A	?	0	*	*
-Chromosome6	40675901	C	2	T.	FJ	1	.	s	0	*	*	1	T	J	0	*	*
-Chromosome6	40691042	A	4	.GG.	FFFF	10	.G.....G..	FFFFFFFFFF	11	G...G.....G	FFFFFFFFAFA	16	........G.......	JFFFAFFFFFF9FFFA	14	..............	FFFFFFFFFFFFFF
-Chromosome6	40691063	C	4	....	JJJJ	11	.........T.	JJJJJJJJJJJ	11	.TT.....T..	JJJJJJJJFJF	16	......T........T	JJJJFJJJJJJJJJJA	14	......T..TT.T.	JJJJJJJJJJJJ7J
-Chromosome6	40691273	T	4	,,,,	JJJJ	10	,,c,,,,,,,	JJJJJFJJJJ	10	c,,,,,,,,,	JJJJJJJJJJ	16	,c,,,,,c,,,,,,,,	JFJJJJJJJJJJJJJJ	14	c,,,,,,,,,,,,,	JJJJJJJJFJJJJJ
-Chromosome6	40691280	A	4	g,g,	JJJJ	10	,$,,gg,ggg,	AJFJJJJJJJ	10	,,,,gg,,,g	JJJJJJJJJJ	16	,,g,,,g,,g,,,,,,	JAJJJJJJJJJJJJJJ	13	,,,,,,,,,,g,g	JJJJFJJFFJJJF
-Chromosome6	40898415	C	5	..+1T..+1T.+1T	ososs	6	....+1T..	sas\oe	8	..+1T.+1T.+1T..+1T..	eJjsssos	10	......+1T....-1T	soHossssjs	6	.....+1T.	skssss
-Chromosome6	40898428	A	5	...+1T..	o\kso	7	...+1T.+1T..+1T,+1t	sCs7oeF	10	.+2TT.+1T.+1T.+1T...+1T.,+1t,+1t	ssJJVorsJJ	11	...+1T.+1T..+1T.+1T..+1T.,+1t	sjsosJos`jJ	7	.+1T.+1T...+1T.,+1t	ssjfJsJ
-Chromosome6	40898639	T	3	..-4GATC.	oJs	5	.-4GATC...-4GATC.	IssIj	7	...-4GATC.-4GATC..-4GATC.	ssIIsIs	14	.........-4GATC.-4GATC.-4GATC..-4GATC.-4GATC	esssjfssIIIJII	5	....-4GATC.	sosIs
-Chromosome6	40898640	G	3	.*.	s@s	5	*..*.	IssIo	7	..**.*.	ssIIoIs	14	........***.**	ksssVassIIIAII	5	...*.	sf`Is
-Chromosome6	40898641	A	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	ssIIkIs	14	........***.**	ssssasssIIIJII	5	...*.	sooIs
-Chromosome6	40898642	T	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	ssII\Is	14	........***.**	ssssWossIIIJII	5	...*.	ssoIs
-Chromosome6	40898643	C	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	osIIWIs	14	........***.**	osssHsssIIIJII	5	.A.*.	sssIs
-Chromosome6	40899317	G	7	.....A.	JJJJJJJ	8	.AA.A...	JJJJJJJJ	9	..A.A..AA	JJJJJJJJJ	3	.A.	JJJ	12	A..A.AA....A	JJJJJJJJJJJJ
-Chromosome6	40899410	C	7	.......	JFJAJJJ	8	.AA.A...	sJJJ`JJJ	9	........A	JJJJJJJJJ	4	...A	JJJV	13	T....AA....A.	FJJJJJJJFJJJo
-Chromosome6	40899433	A	7	.+1T.+1T.-1T...+1T.	7FJ7JFA	7	....+1T.-1T..-1T	s7JsJJo	9	.-1T..+1T.+1T..+2TT.-1T..+1T	FJ<JJJJFJ	7	..+1T..+1T.-1T.+1T.	FJJ`JJJ	13	...+1T.+1T..+1T.+1T.+1T....+1T.-2TT	JJJJ7J7FJJJJs
-Chromosome6	40899671	C	12	..T.........	7JJJJJJFJJJJ	5	TT...	JJJJJ	13	....T........	JJJJAJJJJJJJJ	2	..	JJ	15	.......TT...t..	FJJJJJJA7JJJjss
-Chromosome6	40927939	T	1	.	V	0	*	*	0	*	*	2	,-1c,-1c	66	3	,-1c,-1c,	66s
-Chromosome6	40927940	C	1	.	o	0	*	*	0	*	*	2	**	55	3	**,	55s
-Chromosome6	40927942	T	1	.	V	0	*	*	0	*	*	2	gg	55	3	gg,	55s
-Chromosome6	40927946	C	1	.	o	0	*	*	0	*	*	1	g	J	3	gg,	AJs
-Chromosome6	40942132	A	1	T	J	4	...T	JJJJ	0	*	*	1	.	J	0	*	*
-Chromosome6	40942158	G	1	T	J	4	..T.	JJJJ	0	*	*	1	.	A	0	*	*
-Chromosome6	40942220	G	1	,	J	4	,t,,	JJJJ	0	*	*	1	a	J	0	*	*
-Chromosome6	40942234	C	1	a	J	4	t,,,	JJJJ	0	*	*	1	,	F	0	*	*
-Chromosome6	40942258	T	1	c	J	4	,,,c	JAFJ	0	*	*	1	,	J	0	*	*
-Chromosome6	41015155	G	0	*	*	0	*	*	2	.-1A.-1A	JJ	1	.-1A	J	1	.	J
-Chromosome6	41064600	G	1	.	J	0	*	*	3	C..	AJJ	0	*	*	1	C	J
-Chromosome6	41064606	G	1	.	J	0	*	*	3	C..	7JJ	0	*	*	1	C	J
-Chromosome6	41064723	A	1	,	J	0	*	*	3	t,,	JFJ	0	*	*	1	t	J
-Chromosome6	41064810	A	1	,	J	0	*	*	3	t,,	JJJ	0	*	*	1	t	J
-Chromosome6	41064813	A	1	,	J	0	*	*	3	c,,	JJJ	0	*	*	1	c	J
-Chromosome6	41064828	G	1	,	J	0	*	*	3	a,,	JJJ	0	*	*	1	a	J
-Chromosome6	41083554	G	0	*	*	0	*	*	1	,	J	2	T.	ss	1	t	A
-Chromosome6	41174158	T	2	.c	<F	1	c	<	1	.	J	0	*	*	0	*	*
-Chromosome6	41426795	C	0	*	*	1	t	J	1	,	F	0	*	*	3	,t,	JJA
-Chromosome6	41430207	T	4	.C..	osos	3	..C	oeo	2	CC	s`	3	..C	sss	1	.	V
-Chromosome6	41487899	C	1	,-7ttgccag	;	0	*	*	1	,-7ttgccag	;	0	*	*	1	,	F
-Chromosome6	41570494	T	1	.-1C	J	0	*	*	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome6	41648271	C	1	,	J	1	G	f	0	*	*	2	.G	sJ	0	*	*
-Chromosome6	41804056	A	0	*	*	0	*	*	6	..G..G	jsseos	1	G	`	3	G..	sFs
-Chromosome6	41822339	G	0	*	*	2	..	JJ	2	AT	JJ	0	*	*	2	.A	JJ
-Chromosome6	41903789	A	0	*	*	1	.-5AGCCC	I	0	*	*	1	.-5AGCCC	I	1	.-5AGCCC	I
-Chromosome6	42152323	T	1	.	J	1	.-5ATCCA	>	1	.-5ATCCA	<	0	*	*	0	*	*
-Chromosome6	42272725	T	0	*	*	1	.-8ACTTGTGC	J	1	.-8ACTTGTGC	J	0	*	*	1	.-8ACTTGTGC	J
-Chromosome6	42303413	G	0	*	*	2	.A	Js	0	*	*	2	..	JF	2	AA	JJ
-Chromosome6	42377525	C	1	.	J	2	.G	JJ	1	G	J	0	*	*	0	*	*
-Chromosome6	42377540	C	1	.	J	2	.A	AJ	1	A	J	0	*	*	0	*	*
-Chromosome6	42377559	G	1	.	J	2	.A	<J	1	A	J	0	*	*	0	*	*
-Chromosome6	42377602	C	1	.	s	2	.T	FA	1	T	J	0	*	*	0	*	*
-Chromosome6	42377608	A	1	.	s	2	.G	FJ	1	G	J	0	*	*	0	*	*
-Chromosome6	42377615	G	1	.	s	2	.A	7F	1	A	A	0	*	*	0	*	*
-Chromosome6	42500923	G	3	t,,	JJJ	2	,,	JF	0	*	*	2	,t	JJ	1	t	J
-Chromosome6	42502140	T	1	C	J	0	*	*	0	*	*	3	..C	AFJ	1	.	A
-Chromosome6	42503648	T	0	*	*	2	,,	FF	1	c	:	4	cc,.	::Fk	0	*	*
-Chromosome6	42512393	T	0	*	*	1	.	J	0	*	*	1	C	J	2	.C	JJ
-Chromosome6	42512446	C	0	*	*	1	T	o	0	*	*	1	.	s	2	.T	so
-Chromosome6	42512476	G	0	*	*	1	C	s	0	*	*	1	.	s	2	AC	ss
-Chromosome6	42644888	T	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,	<
-Chromosome6	42721489	G	0	*	*	4	.-8TTTAGGGT...	WJJJ	4	.-1TT.-1T.	FFJs	1	.-1T	J	6	.-1T..-1T.-1T..	sJJJJJ
-Chromosome6	42721539	T	0	*	*	4	....	eF7o	4	C...	oeoj	1	C	s	5	.G..C	oFsso
-Chromosome6	42722746	G	1	.	F	2	.A	FF	0	*	*	0	*	*	3	..A	AA>
-Chromosome6	42722768	G	1	.	J	2	..-2CA	JJ	0	*	*	0	*	*	3	...-2CA	J<J
-Chromosome6	42722777	C	1	.	J	1	T	J	0	*	*	0	*	*	2	T.	JJ
-Chromosome6	42722911	C	1	,	F	2	,t	JA	0	*	*	0	*	*	2	,t	FJ
-Chromosome6	42722972	A	1	,	J	1	t	F	0	*	*	0	*	*	3	,,t	<JJ
-Chromosome6	42722973	T	1	,	J	1	a	J	0	*	*	0	*	*	3	,,a	AJJ
-Chromosome6	42722984	A	1	,	J	1	g	A	0	*	*	0	*	*	3	,,g	FJJ
-Chromosome6	42723285	T	0	*	*	2	.-7TAGGGTC.	8J	0	*	*	2	.-7TAGGGTC.	6>	2	.-7TAGGGTC.	5J
-Chromosome6	42723306	T	0	*	*	2	..	8J	0	*	*	4	...C	sJ=F	3	..C	<sJ
-Chromosome6	42723310	G	0	*	*	2	..	85	0	*	*	3	..t	=IA	3	T..	<oJ
-Chromosome6	42723317	G	0	*	*	2	T,	aA	0	*	*	4	...,	soIA	3	CT.	sos
-Chromosome6	42723327	C	0	*	*	2	..	sd	0	*	*	5	..*.t	oRFPJ	3	..T	jss
-Chromosome6	42725005	T	0	*	*	1	.	J	2	.C	JJ	2	.C	Fj	0	*	*
-Chromosome6	42725088	G	0	*	*	1	A	k	2	..	`e	2	A.	jR	0	*	*
-Chromosome6	42725195	T	0	*	*	1	,	J	2	,-7tagggac,	>J	1	,-7tagggac	>	0	*	*
-Chromosome6	43008488	T	1	,	F	1	G	F	2	C.	JA	0	*	*	0	*	*
-Chromosome6	43081699	T	1	.-1C	J	0	*	*	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome6	43100878	T	1	c	J	3	.CC	sFJ	0	*	*	1	.	s	0	*	*
-Chromosome6	43173919	C	2	,,	FJ	0	*	*	4	t,,t	JJ7<	0	*	*	3	,t,	JJA
-Chromosome6	43173933	G	2	,+1t,+1t	JJ	0	*	*	4	,,+1t,+2tt,+3ttt	JJAA	0	*	*	2	,,+2tt	JF
-Chromosome6	43270968	C	1	G	o	0	*	*	0	*	*	2	,g	AF	1	,	A
-Chromosome6	43270974	T	1	.	s	0	*	*	0	*	*	2	c,	JJ	1	c	J
-Chromosome6	43371245	T	1	.-3TAG	;	0	*	*	2	..-3TAG	J;	1	.-3TAG	;	0	*	*
-Chromosome6	43371344	A	1	G	J	0	*	*	2	.G	JJ	2	.G	JJ	0	*	*
-Chromosome6	43371350	C	1	.	J	0	*	*	2	T.	JJ	2	T.	JF	0	*	*
-Chromosome6	43371448	C	1	,	J	0	*	*	2	,g	JJ	2	G,	jJ	0	*	*
-Chromosome6	43371449	A	1	,	J	0	*	*	2	,g	JJ	2	G,	sJ	0	*	*
-Chromosome6	43371451	T	1	,	J	0	*	*	2	,a	JJ	2	A,	oJ	0	*	*
-Chromosome6	43371486	C	1	,	J	0	*	*	2	,g	JJ	2	,g	JA	0	*	*
-Chromosome6	43371503	G	1	,	J	0	*	*	1	,-1c	J	1	,-1c	J	0	*	*
-Chromosome6	43424047	C	0	*	*	1	t	F	0	*	*	1	,	F	2	,t	JJ
-Chromosome6	43889789	A	1	,-5tactg	:	0	*	*	1	,-5tactg	:	0	*	*	1	,-5tactg	:
-Chromosome6	43910092	C	0	*	*	3	,+1ta,+1t	JJJ	0	*	*	1	a	A	2	,+1t,	JA
-Chromosome6	43915617	G	2	,+1t,+2tt	FJ	2	,+3ttt,+2tt	JJ	1	,+7ttttttt	J	2	,+1t,+1t	JF	0	*	*
-Chromosome6	43918315	T	0	*	*	0	*	*	2	..-2CC	JJ	1	.	s	1	.-2CC	J
-Chromosome6	43919272	T	0	*	*	0	*	*	1	.	s	2	G.	ss	1	G	o
-Chromosome6	43920123	A	0	*	*	1	.-2AG	H	2	.-4AGAG.-4AGAG	;;	2	.-2AG.-2AG	>>	0	*	*
-Chromosome6	43921429	T	0	*	*	1	.	J	0	*	*	2	a.	sJ	1	A	J
-Chromosome6	43921432	C	0	*	*	1	.	J	0	*	*	2	t.	oJ	1	A	J
-Chromosome6	43921467	C	0	*	*	1	.	J	0	*	*	2	t.	sJ	1	T	J
-Chromosome6	43969690	C	0	*	*	0	*	*	3	...	JJ7	1	T	J	5	...T.	<JJJJ
-Chromosome6	43969751	G	0	*	*	0	*	*	3	.A.	JJF	1	.	J	5	T....	JJJJJ
-Chromosome6	43969776	C	0	*	*	0	*	*	3	...	JJA	1	T	J	4	.AT.	FJJJ
-Chromosome6	43969929	T	0	*	*	0	*	*	3	,,,	JJF	1	c	F	5	,,,c,	7JJJJ
-Chromosome6	43970396	G	0	*	*	1	.	J	3	..-1A.	JJF	0	*	*	4	.-1A...	JJ<J
-Chromosome6	44010935	G	0	*	*	0	*	*	2	,,	JJ	3	a,,	JFJ	3	a,,	JJJ
-Chromosome6	44125233	A	0	*	*	0	*	*	3	,,g	JJJ	3	c,,	7JF	1	,	F
-Chromosome6	44125239	G	0	*	*	0	*	*	3	,,t	JJJ	3	t,,	<JA	1	,	F
-Chromosome6	44166817	C	0	*	*	1	.+1A	J	0	*	*	1	.-1A	J	1	.-1A	F
-Chromosome6	44607384	C	1	,	F	0	*	*	2	t,	JA	0	*	*	2	t,	AJ
-Chromosome6	44613527	C	0	*	*	0	*	*	1	,-2gg	I	1	,-2gg	I	1	,	J
-Chromosome6	44614773	G	2	.-5ATTAT.	?J	0	*	*	0	*	*	3	...-5ATTAT	JJJ	4	..A.	JJJJ
-Chromosome6	44614864	G	2	CC	FF	0	*	*	0	*	*	3	..C	JFA	4	.C.C	JJ<s
-Chromosome6	44615118	T	2	,-1a,-1a	JJ	1	.-2AA	s	0	*	*	1	,-1a	J	3	,-1a,-1a,-1a	AFJ
-Chromosome6	44615141	C	2	,g	JJ	1	G	s	0	*	*	2	,g	J7	2	,,	JJ
-Chromosome6	44621466	G	0	*	*	1	.-1A	s	4	.-1A...	ss\s	1	.-1A	s	1	.	o
-Chromosome6	44627802	A	0	*	*	1	.	J	2	C.	JJ	1	C	o	0	*	*
-Chromosome6	44627804	G	0	*	*	1	.	J	2	A.	JJ	1	A	R	0	*	*
-Chromosome6	44627808	C	0	*	*	1	.	J	2	T.	JJ	1	T	V	0	*	*
-Chromosome6	44627809	T	0	*	*	1	.	J	2	C.	JJ	1	C	e	0	*	*
-Chromosome6	44627827	C	0	*	*	1	.	J	2	A.	JJ	1	T	k	0	*	*
-Chromosome6	44627829	G	0	*	*	1	A	J	2	A.	JJ	1	.	`	0	*	*
-Chromosome6	44703825	G	1	,	J	2	,a	JJ	1	c	J	0	*	*	0	*	*
-Chromosome6	44818747	G	0	*	*	2	.C	Ro	0	*	*	2	CC	so	2	..	s`
-Chromosome6	44818748	T	0	*	*	2	C.	Me	0	*	*	2	..	sW	2	CC	sj
-Chromosome6	44818787	C	0	*	*	1	.-1A	s	0	*	*	2	,-1a,	JF	1	,	J
-Chromosome6	44876580	C	1	t	J	0	*	*	0	*	*	1	,	J	2	t,	<J
-Chromosome6	44885064	T	0	*	*	1	,-1a	G	1	,-1a	G	0	*	*	1	,	7
-Chromosome6	45133302	C	1	.-2AA	s	1	.-2AA	s	0	*	*	0	*	*	1	.-2AA	s
-Chromosome6	45133314	A	1	.-2AT	]	1	.	i	0	*	*	0	*	*	1	.-2AT	]
-Chromosome6	45147589	G	0	*	*	1	A	J	1	.	J	2	C,	<F	0	*	*
-Chromosome6	45147989	C	1	T	J	2	..	JJ	0	*	*	2	T.	JJ	0	*	*
-Chromosome6	45202208	C	1	.-7AATGGAG	J	0	*	*	1	.	J	0	*	*	1	.-7AATGGAG	J
-Chromosome6	45203723	A	2	..-1T	JA	0	*	*	1	.	J	0	*	*	1	.-1T	H
-Chromosome6	45203724	T	2	.*	JF	0	*	*	1	.	J	0	*	*	1	*	J
-Chromosome6	45290646	C	2	.T	JJ	0	*	*	3	.TT	JFJ	0	*	*	1	T	J
-Chromosome6	45290657	C	2	.-1A.-1A	JF	0	*	*	3	.-1A.-1A.-1A	JJJ	0	*	*	1	.-1A	J
-Chromosome6	45290671	C	2	.G	JJ	0	*	*	3	.GG	JJJ	0	*	*	1	G	J
-Chromosome6	45290705	C	2	.T	J<	0	*	*	3	.TT	JJJ	0	*	*	1	T	J
-Chromosome6	45290970	G	2	a,	FA	0	*	*	3	aa,	JJJ	0	*	*	1	a	F
-Chromosome6	45291385	T	1	g	J	0	*	*	1	,-1a	H	0	*	*	1	.	o
-Chromosome6	45298835	T	1	.-4GTAC	7	1	.-4GTAC	:	0	*	*	0	*	*	1	.-4GTAC	:
-Chromosome6	45320183	A	4	TTTT	FJJJ	0	*	*	5	.TTTT	JFJAF	2	.T	FF	7	TTTT.TT	JJJJJJ<
-Chromosome6	45330328	T	1	,-1c	8	1	,	<	0	*	*	0	*	*	1	,-1c	8
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-Chromosome6	45338323	C	0	*	*	0	*	*	2	G,	sJ	1	g	J	1	.	s
-Chromosome6	45338330	C	0	*	*	0	*	*	2	T,	sJ	1	t	F	1	.	s
-Chromosome6	45343457	C	1	,	J	0	*	*	2	,a	FF	1	T	k	0	*	*
-Chromosome6	45343463	C	1	,	J	0	*	*	2	,-1g,	7J	1	A	s	0	*	*
-Chromosome6	45345206	A	0	*	*	0	*	*	1	.-4GTAC	@	1	,-4gtac	:	1	,-4gtac	:
-Chromosome6	45496562	T	0	*	*	0	*	*	2	C.	JJ	1	.	J	1	C	J
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-Chromosome6	45496648	C	1	A	s	0	*	*	2	.A	JJ	1	G	J	1	.	s
-Chromosome6	45713156	G	1	T	J	1	.	o	2	CT	sJ	0	*	*	0	*	*
-Chromosome6	45713184	C	1	T	J	1	.	s	2	.A	sJ	0	*	*	0	*	*
-Chromosome6	45713202	C	1	T	J	1	.	V	2	.T	eA	0	*	*	0	*	*
-Chromosome6	45899928	T	0	*	*	2	,-1a.	JJ	0	*	*	2	..	JJ	1	C	J
-Chromosome6	45933942	A	0	*	*	0	*	*	1	.	J	2	T.	FA	3	.T.	sJJ
-Chromosome6	45933955	G	0	*	*	0	*	*	1	.+1A	J	2	.+1A.	Is	4	.+1A.+1A.+1A,+1a	JJJJ
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-Chromosome6	45934074	T	0	*	*	0	*	*	1	c	J	2	.c	sJ	2	ac	JJ
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-Chromosome6	46204556	A	0	*	*	1	.	F	0	*	*	1	.-1C	E	1	.-1C	F
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-Chromosome6	46459946	T	1	,-4ccgg	J	1	.	s	0	*	*	2	,-4ccgg,-4ccgg	J<	0	*	*
-Chromosome6	46481965	G	3	,aa	7AJ	0	*	*	1	,	7	0	*	*	5	,,,t,	JAJ77
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-Chromosome6	46998795	G	2	.T	JJ	0	*	*	1	T	J	1	.	J	0	*	*
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-Chromosome6	47194137	A	0	*	*	1	g	J	1	,	F	0	*	*	3	,g.	JJs
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-Chromosome6	47258182	A	0	*	*	3	...	sss	3	C..	qss	0	*	*	4	..C.	ssqs
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-Chromosome6	47847976	C	0	*	*	1	.-1A	s	0	*	*	1	,-1a	J	1	,+3aaa	F
-Chromosome6	47868693	A	1	,-1t	F	1	,-1t	J	1	,-1t	J	0	*	*	0	*	*
-Chromosome6	47869043	A	0	*	*	2	.G	Js	0	*	*	1	G	s	3	G.G	sos
-Chromosome6	47869051	A	0	*	*	3	..+1G,+1g	FJA	0	*	*	2	.+1G,+1g	JE	5	.+1G..+1G,+1g,+1g	JsJJJ
-Chromosome6	47869065	C	0	*	*	2	.T	<s	0	*	*	1	T	s	3	T.T	oss
-Chromosome6	47869076	A	0	*	*	2	.$C	Ao	0	*	*	1	C	o	3	C.C	sss
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-Chromosome6	51761025	A	0	*	*	1	.	J	1	G	J	0	*	*	2	G.	Js
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-Chromosome6	51824433	T	0	*	*	3	..A	JJJ	2	..	FJ	4	..A.	JJJJ	0	*	*
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-Chromosome6	51969766	G	1	A	F	0	*	*	0	*	*	2	T.	JJ	1	.	s
-Chromosome6	52210109	T	1	.-7GTTGCAA	9	0	*	*	0	*	*	1	.-7GTTGCAA	O	1	,-7gttgcaa	8
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-Chromosome6	52251874	G	1	a	J	0	*	*	4	,,,a	JJAJ	0	*	*	2	a,	JJ
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-Chromosome6	56482978	C	0	*	*	5	..A..	VgJgg	5	....A	gggsJ	6	.....,	gggWgA	7	.A.....	gJgggYg
-Chromosome6	56593850	G	2	C,	sF	1	c	J	1	,	J	0	*	*	0	*	*
-Chromosome6	56593860	T	2	G,	sJ	1	g	J	1	,	J	0	*	*	0	*	*
-Chromosome6	56595471	G	1	,	<	0	*	*	1	a	F	0	*	*	5	,a,,,	FF<JF
-Chromosome6	56595483	A	1	g	A	0	*	*	1	,	J	0	*	*	5	,,ggg	AJFJJ
-Chromosome6	56595531	C	1	,	J	0	*	*	1	t	J	0	*	*	4	t,,,	JJFA
-Chromosome6	56604307	G	1	a	J	0	*	*	1	.	s	3	a,,	<JJ	2	,a	JJ
-Chromosome6	56604353	C	1	t	J	0	*	*	1	,	J	3	t,,	JJJ	2	,t	FJ
-Chromosome6	56604437	A	1	g	J	0	*	*	1	,	J	3	g,,	JJJ	2	,g	JJ
-Chromosome6	56773294	T	0	*	*	1	.	J	0	*	*	1	C	J	2	.C	FJ
-Chromosome6	56773366	C	0	*	*	1	.	A	0	*	*	2	TT	JJ	2	.T	AJ
-Chromosome6	56839954	C	0	*	*	1	.$	E	2	.-2AG.-2AG	JJ	3	.$.$,-2ag	EEJ	0	*	*
-Chromosome6	56839989	G	0	*	*	1	,-6cgtcct	A	2	.-6CGTCCT.-6CGTCCT	Ca	2	,-6cgtcct,-6cgtcct	AA	0	*	*
-Chromosome6	56841168	A	1	.-2TT	J	1	.-2TT	J	1	.-3TTT	s	0	*	*	0	*	*
-Chromosome6	56933810	C	1	.-1T	o	1	.	s	0	*	*	0	*	*	1	*	d
-Chromosome6	57101085	T	0	*	*	2	a,	JF	3	c,,	JJJ	0	*	*	1	,	J
-Chromosome6	57101094	C	0	*	*	2	t,	FJ	3	,,t	JJF	0	*	*	1	,	J
-Chromosome6	57204791	C	0	*	*	2	.-1A.-1A	ke	1	.-1A	o	1	.-1A	j	1	.-1A	J
-Chromosome6	57212996	G	2	,a	7J	1	a	F	0	*	*	0	*	*	1	,	J
-Chromosome6	57219709	T	0	*	*	1	a	J	0	*	*	2	,a	JJ	1	,	J
-Chromosome6	57219715	C	0	*	*	1	g	J	0	*	*	2	,g	JJ	1	,	J
-Chromosome6	57367009	C	1	T	J	1	.	F	2	T.	FJ	0	*	*	0	*	*
-Chromosome6	57367116	A	1	g	J	1	,	<	2	g,	<F	0	*	*	0	*	*
-Chromosome6	57513153	G	2	,,	JJ	4	,-2cc*,-2cc,-2cc	JAJJ	7	,-2cc,-2cc,,,,+2cc,	JJJ7JJA	4	,-2cc,,+1c,+1c	JFJJ	7	,-2cc,,,,,+1c,+2cc	JJFJ7JF
-Chromosome6	57513218	T	2	,,	JJ	4	c,,,	JJJJ	8	,c,,,,,,	JAJJ<JJJ	6	,,cc,,	JJJJFJ	8	,ccc,,,,	JJJJAJJJ
-Chromosome6	57670729	G	2	AA	JJ	4	,A..	ssAJ	0	*	*	0	*	*	4	.A.A	JJ7J
-Chromosome6	57724967	C	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,-1a	J
-Chromosome6	57750808	C	0	*	*	2	T.	Rs	1	T	s	0	*	*	1	.	J
-Chromosome6	57750931	C	0	*	*	2	,t	JJ	1	t	J	0	*	*	1	,	J
-Chromosome6	57758947	G	0	*	*	0	*	*	2	A.	JA	2	A.	JJ	3	...	JJJ
-Chromosome6	57758973	C	0	*	*	0	*	*	2	T.	JA	2	..	J7	3	.G.	JJJ
-Chromosome6	57759018	C	0	*	*	0	*	*	2	.T	J<	2	..	JJ	3	.T.	JJJ
-Chromosome6	57759034	A	0	*	*	0	*	*	2	..	JJ	2	.G	FJ	3	G..	JJA
-Chromosome6	57759261	C	0	*	*	0	*	*	1	,	J	1	t	J	3	t,,	JJJ
-Chromosome6	57759921	A	2	..	jJ	0	*	*	2	.G	JJ	0	*	*	1	G	J
-Chromosome6	57759930	A	2	..-1T	oJ	0	*	*	3	.-1T.-1T.	JJJ	0	*	*	1	.	J
-Chromosome6	57759972	C	2	.T	sJ	0	*	*	3	TT.	JFF	0	*	*	1	.	J
-Chromosome6	57759988	G	2	..	sF	0	*	*	3	..A	A7J	0	*	*	1	A	J
-Chromosome6	57760002	G	2	A,	JJ	0	*	*	3	AA.	JFF	0	*	*	1	.	J
-Chromosome6	57760375	C	0	*	*	1	,	J	3	,t,	JJJ	2	,T	JJ	1	t	F
-Chromosome6	57992265	C	0	*	*	1	.-1A	s	1	.	J	0	*	*	1	.-1A	J
-Chromosome6	57992293	G	0	*	*	1	.-7TAGGAAC	s	1	.	F	0	*	*	1	.-7TAGGAAC	J
-Chromosome6	58217350	C	0	*	*	0	*	*	2	..	JJ	1	T	J	2	.T	JJ
-Chromosome6	58217355	C	0	*	*	0	*	*	2	..	JJ	1	A	F	2	T.	JJ
-Chromosome6	58262764	A	0	*	*	1	,	7	2	CC	`A	0	*	*	2	C.	oJ
-Chromosome6	58262786	C	0	*	*	1	,	J	2	T.	VF	0	*	*	2	t.	AJ
-Chromosome6	58262804	C	0	*	*	1	,	J	1	t	7	0	*	*	2	t.	7J
-Chromosome6	58289924	T	1	,	J	0	*	*	1	c	J	2	,c	JJ	0	*	*
-Chromosome6	58337457	G	2	.A	JJ	2	..	J<	0	*	*	1	A	J	0	*	*
-Chromosome6	58337917	C	2	t,	7<	0	*	*	3	.,,	FJF	4	..,t	oJAA	0	*	*
-Chromosome6	58337926	T	2	cc	7F	0	*	*	3	C,,	JJA	4	..,c	sAJF	0	*	*
-Chromosome6	58337947	T	2	a,	JJ	0	*	*	2	,,	FF	4	..,a	ssJJ	0	*	*
-Chromosome6	58638250	A	1	g	J	1	,	J	0	*	*	2	g.	JJ	0	*	*
-Chromosome6	58675157	T	0	*	*	2	G.	oF	1	G	J	0	*	*	1	.	F
-Chromosome6	58973027	A	1	C	F	0	*	*	2	..	JJ	2	.C	JJ	2	.C	<A
-Chromosome6	58973141	T	1	C	j	0	*	*	2	..	oj	2	.C	js	2	.C	so
-Chromosome6	58973185	G	1	a	<	0	*	*	2	,,	J7	2	,a	JJ	2	,a	FJ
-Chromosome6	59072704	G	1	.	J	1	.-2AA	J	0	*	*	0	*	*	1	.-1A	J
-Chromosome6	59254821	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	4	...C	FJJJ
-Chromosome6	59254977	T	2	ga	AJ	0	*	*	0	*	*	1	g	J	3	,g,	JJJ
-Chromosome6	59351195	C	2	TT	7J	1	.-1T	J	0	*	*	0	*	*	1	.	J
-Chromosome6	59388023	C	1	.	J	0	*	*	0	*	*	2	G,	JJ	1	G	J
-Chromosome6	59388051	C	1	T	J	0	*	*	0	*	*	2	.t	JJ	1	.	J
-Chromosome6	59388074	T	1	C	F	0	*	*	0	*	*	2	.c	JJ	1	.	J
-Chromosome6	59445298	C	0	*	*	0	*	*	1	G	J	1	.	<	2	A.	JJ
-Chromosome6	59445305	C	0	*	*	0	*	*	1	G	J	1	.	J	2	A.	JJ
-Chromosome6	59445333	T	0	*	*	0	*	*	1	.-2AA	:	1	.	J	2	.-2AA.	DJ
-Chromosome6	59445569	A	0	*	*	0	*	*	1	g	J	1	,	J	2	,g	JA
-Chromosome6	59494261	G	1	.	<	0	*	*	1	.-1T	J	1	.-3TTT	F	0	*	*
-Chromosome6	59515689	A	0	*	*	0	*	*	1	G	s	2	,g	JJ	1	,	J
-Chromosome6	59601586	G	2	.A	ss	0	*	*	1	A	o	0	*	*	1	.	s
-Chromosome6	59647475	G	0	*	*	2	.a	VJ	1	,	F	0	*	*	1	A	J
-Chromosome6	59647482	C	0	*	*	2	.-3TAG,-3tag	sJ	1	,	F	0	*	*	1	.-3TAG	J
-Chromosome6	59647500	G	0	*	*	2	A,	sJ	1	,	F	0	*	*	1	A	F
-Chromosome6	59647539	C	0	*	*	2	a,	JJ	1	,	J	0	*	*	1	G	J
-Chromosome6	59655241	A	1	,-1g	A	1	,-1g	a	1	,-1g	J	1	,-1g	J	0	*	*
-Chromosome6	59830166	A	1	,-1t	>	0	*	*	0	*	*	1	,-1t	>	1	,-1t	>
-Chromosome6	59998206	G	2	..	JJ	0	*	*	0	*	*	2	.T	JA	3	.T.	JJJ
-Chromosome6	59998234	A	2	..	JJ	0	*	*	0	*	*	2	.G	JF	3	.G.	JJJ
-Chromosome6	59998263	C	2	..	JJ	0	*	*	0	*	*	2	.T	JJ	3	.T.	JJJ
-Chromosome6	59998266	C	2	T.	FJ	0	*	*	0	*	*	2	..	JA	3	..T	JJF
-Chromosome6	59998269	C	2	..	7J	0	*	*	0	*	*	2	.A	J7	3	.A.	JJJ
-Chromosome6	59998308	C	2	.T	JJ	0	*	*	0	*	*	2	.A	FM	3	.A.	JJJ
-Chromosome6	59998336	T	2	,,	AJ	0	*	*	0	*	*	2	a,	7J	3	,a,	JJJ
-Chromosome6	59998417	T	2	cc	JJ	0	*	*	0	*	*	2	,c	7J	3	c,c	JJJ
-Chromosome6	59998419	A	2	g,	FJ	0	*	*	0	*	*	2	gg	<J	3	,g,	JJJ
-Chromosome6	60186934	T	0	*	*	1	,	J	4	aa,,	JJJF	4	a,,a	JJJJ	2	aa	JJ
-Chromosome6	60188271	C	2	.G	JJ	0	*	*	5	G....	JJJJJ	1	.	J	2	.G	J<
-Chromosome6	60206974	T	0	*	*	2	C.	JJ	1	C	J	0	*	*	3	C.C	JJJ
-Chromosome6	60272590	A	1	.	F	1	G	J	0	*	*	0	*	*	2	.G	JJ
-Chromosome6	60281164	T	0	*	*	1	.	J	0	*	*	3	C..	JJJ	3	C..	JJJ
-Chromosome6	60294838	A	0	*	*	1	.-6TACGAG	9	2	.-6TACGAG.-6TACGAG	89	0	*	*	1	.-6TACGAG	9
-Chromosome6	60295065	T	0	*	*	0	*	*	2	.$c	EJ	1	.	o	1	c	J
-Chromosome6	60296353	T	1	,-1a	J	0	*	*	1	.-1A	J	1	.-1A	7	0	*	*
-Chromosome6	60447285	T	0	*	*	4	C.CC	JJJJ	1	C	J	0	*	*	1	.	J
-Chromosome6	60456693	A	0	*	*	0	*	*	1	.	s	2	.g	sJ	1	g	J
-Chromosome6	60675187	C	0	*	*	1	.	J	1	T	J	2	*.	jJ	0	*	*
-Chromosome6	60777452	T	1	g	J	2	.g	sJ	0	*	*	0	*	*	1	,	J
-Chromosome6	60781001	C	0	*	*	1	T	J	2	.T	os	1	.	s	0	*	*
-Chromosome6	60786154	G	0	*	*	1	C	s	0	*	*	1	.	J	2	,C	sA
-Chromosome6	60786173	G	0	*	*	1	.	s	0	*	*	2	tT	JJ	2	t.	sF
-Chromosome6	60960093	T	0	*	*	0	*	*	1	G	A	1	.	J	2	.G	JF
-Chromosome6	60960134	G	0	*	*	0	*	*	1	A	<	1	.	J	2	.A	JJ
-Chromosome6	60978890	G	0	*	*	0	*	*	1	.	J	1	T	J	2	T.	JJ
-Chromosome6	60979224	C	0	*	*	0	*	*	1	,	A	1	g	J	2	,g	J<
-Chromosome6	61013830	G	2	.+1T.	JJ	3	.+1T..	JJs	1	.	J	0	*	*	0	*	*
-Chromosome6	61013838	C	2	.-1A.	JJ	3	.-1A..	FJs	1	.	J	0	*	*	0	*	*
-Chromosome6	61013851	G	2	C.	JJ	2	C.	Js	1	.	J	0	*	*	0	*	*
-Chromosome6	61013856	A	2	TC	JJ	2	T.	Js	1	C	J	0	*	*	0	*	*
-Chromosome6	61013857	T	2	.G	JJ	2	..	Js	1	G	J	0	*	*	0	*	*
-Chromosome6	61013861	C	2	T.	JJ	3	T..	JJs	1	.	J	0	*	*	0	*	*
-Chromosome6	61013872	T	2	C.	as	3	C..	aks	1	.	o	0	*	*	0	*	*
-Chromosome6	61013921	C	2	G$.$	Jm	3	G$..	ARs	1	.$	m	0	*	*	0	*	*
-Chromosome6	61013968	G	2	,a	JF	2	,,	JJ	1	a	J	0	*	*	0	*	*
-Chromosome6	61014007	A	2	gc	JJ	2	,g	JJ	1	,	J	0	*	*	0	*	*
-Chromosome6	61061736	A	0	*	*	2	C.	7s	2	C.	JJ	0	*	*	1	.	J
-Chromosome6	61061745	C	0	*	*	2	.T	7s	3	.T.	JAJ	0	*	*	1	T	J
-Chromosome6	61061850	G	1	t	A	3	.C.	sRJ	4	A...	JJoo	0	*	*	1	.	A
-Chromosome6	61061865	C	1	a	J	2	..	sJ	2	G.	os	0	*	*	0	*	*
-Chromosome6	61062533	G	1	,	J	0	*	*	0	*	*	1	a	A	2	a,	JJ
-Chromosome6	61062573	T	1	a	J	0	*	*	0	*	*	1	,	J	3	,a.	JJs
-Chromosome6	61062630	A	1	c	J	0	*	*	0	*	*	1	,	J	2	c.	Js
-Chromosome6	61062645	A	1	g	J	0	*	*	0	*	*	1	,	J	2	g.	Js
-Chromosome6	61063621	C	2	A.	;J	1	T	F	2	.,	sJ	0	*	*	0	*	*
-Chromosome6	61063623	G	2	.A	;J	1	.	F	2	T,	sJ	0	*	*	0	*	*
-Chromosome6	61063706	G	1	.	J	0	*	*	2	A,	sJ	0	*	*	1	a	J
-Chromosome6	61063723	C	1	.	J	0	*	*	3	,,T	JFF	1	T	F	2	,T	JJ
-Chromosome6	61063742	G	0	*	*	0	*	*	2	,T	FJ	1	T	J	2	,T	JJ
-Chromosome6	61063747	C	0	*	*	0	*	*	2	,A	JJ	1	A	J	2	,A	JJ
-Chromosome6	61064303	A	1	.	J	0	*	*	2	GG	sJ	0	*	*	2	G,	J7
-Chromosome6	61064304	A	1	.	F	0	*	*	2	GT	sF	0	*	*	2	G,	JF
-Chromosome6	61064315	T	1	C	J	0	*	*	2	.C	sJ	0	*	*	1	.	J
-Chromosome6	61064679	C	0	*	*	2	T.	FJ	4	....	sJJF	1	T	J	1	A	J
-Chromosome6	61126298	C	0	*	*	1	.	s	1	.-1A	s	1	.-1A	s	0	*	*
-Chromosome6	61285276	A	1	.	F	0	*	*	1	G	J	0	*	*	3	GG.	JJF
-Chromosome6	61285286	G	1	A	J	0	*	*	1	.	A	0	*	*	3	.C.	JJJ
-Chromosome6	61285287	G	1	.	J	0	*	*	1	A	7	0	*	*	3	AA.	JJJ
-Chromosome6	61285340	G	1	.	J	0	*	*	1	.-1C	J	0	*	*	3	.-1C.-1C.-1C	FJJ
-Chromosome6	61285478	C	1	g	<	0	*	*	1	,	J	0	*	*	3	gg,	JJJ
-Chromosome6	61285486	T	1	a	F	0	*	*	1	,	J	0	*	*	3	a,,	JJJ
-Chromosome6	61285490	C	1	,	J	0	*	*	1	g	J	0	*	*	3	,t,	JJJ
-Chromosome6	61285498	C	1	t	A	0	*	*	1	,	F	0	*	*	3	tt,	FFF
-Chromosome6	61321090	C	2	t,	JJ	0	*	*	1	,	J	1	T	o	0	*	*
-Chromosome6	61339896	A	1	,	J	1	,-1t	J	0	*	*	0	*	*	2	,-2tt,	FJ
-Chromosome6	61411108	C	0	*	*	0	*	*	1	,-8tttacagt	;	1	,	J	1	,-8tttacagt	;
-Chromosome6	61411141	T	0	*	*	0	*	*	1	,-3tac	:	1	,	F	1	,-3tac	:
-Chromosome6	61616971	C	0	*	*	0	*	*	1	,-2tt	J	1	,-2tt	J	2	,-2tt,	JF
-Chromosome6	61626158	C	0	*	*	1	T	7	2	..	b]	3	..,-9gttctcctt	An6	0	*	*
-Chromosome6	61738473	A	1	,-1t	s	0	*	*	1	,-1t	s	0	*	*	3	,-1t,.	sse
-Chromosome6	61738484	T	1	,-2tg	=	0	*	*	1	,-2tg	=	0	*	*	3	,-2tg,.	=jR
-Chromosome6	61757762	G	1	.	A	0	*	*	1	A	J	3	.T.	JJJ	0	*	*
-Chromosome6	61757785	A	1	.-4GCTT	F	0	*	*	1	.	J	3	.-4GCTT..	HJJ	0	*	*
-Chromosome6	61757786	G	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
-Chromosome6	61757787	C	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
-Chromosome6	61757788	T	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
-Chromosome6	61757789	T	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
-Chromosome6	61757804	G	1	A	<	0	*	*	1	T	J	3	A..	JJJ	0	*	*
-Chromosome6	61757828	G	1	A	A	0	*	*	1	.	J	3	A..	JJJ	0	*	*
-Chromosome6	61757845	A	1	G	J	0	*	*	1	.	F	3	G..	J<7	0	*	*
-Chromosome6	61762214	T	0	*	*	4	,,,,	JJJJ	5	,,c,,	JJJJJ	3	c,,	JJJ	3	,,c	JJJ
-Chromosome6	61780836	C	1	T	F	0	*	*	1	.	J	0	*	*	2	T.	JA
-Chromosome6	61780976	T	1	c	J	0	*	*	1	,	J	0	*	*	2	,c	JF
-Chromosome6	61781001	T	1	c	J	0	*	*	1	,	J	0	*	*	2	,c	JA
-Chromosome6	61781015	G	1	a	J	0	*	*	1	,	J	0	*	*	2	,a	JJ
-Chromosome6	61781056	C	1	a	J	0	*	*	1	,	J	0	*	*	2	,a	JF
-Chromosome6	61912933	C	1	.	J	0	*	*	0	*	*	1	T	s	3	..T	JJJ
-Chromosome6	61912934	G	1	A	J	0	*	*	0	*	*	1	.	s	3	AA.	JJJ
-Chromosome6	61912940	G	1	.	J	0	*	*	0	*	*	1	A	s	3	..A	JJJ
-Chromosome6	61912961	A	1	.	s	0	*	*	0	*	*	1	G	s	3	..G	eRJ
-Chromosome6	61912966	C	1	.	s	0	*	*	0	*	*	1	T	s	3	..T	sjJ
-Chromosome6	61912969	G	1	.	s	0	*	*	0	*	*	1	A	s	3	..A	ssJ
-Chromosome6	61912990	G	1	.	s	0	*	*	0	*	*	1	C	s	3	..C	soJ
-Chromosome6	61913009	A	1	,	J	0	*	*	0	*	*	1	G	s	3	G,,	JJJ
-Chromosome6	61913020	T	1	,	J	0	*	*	0	*	*	1	C	s	3	C,,	JJJ
-Chromosome6	61913021	T	1	,	J	0	*	*	0	*	*	1	C	s	3	C,,	JJJ
-Chromosome6	61913043	G	1	a	J	0	*	*	0	*	*	1	.	]	3	.,a	JJJ
-Chromosome6	61913051	A	1	,	J	0	*	*	0	*	*	1	g	J	3	G,,	JJJ
-Chromosome6	62014468	T	3	,,c	FF>	1	c	?	0	*	*	0	*	*	2	c,	?F
-Chromosome6	62326639	T	0	*	*	0	*	*	1	.-4CTAA	=	1	.-4CTAA	=	1	.-4CTAA	=
-Chromosome6	62652762	T	0	*	*	1	.	J	2	CC	JJ	2	.C	AJ	0	*	*
-Chromosome6	62678077	G	0	*	*	2	.A	JJ	0	*	*	2	AA	JJ	1	.	J
-Chromosome6	62704948	T	0	*	*	1	C	a	2	c.	Js	1	,	<	0	*	*
-Chromosome6	62899613	G	0	*	*	0	*	*	2	.A	Js	1	A	J	2	..	JJ
-Chromosome6	62899614	A	0	*	*	0	*	*	2	.C	Js	1	C	J	2	..	7J
-Chromosome6	62937754	A	0	*	*	0	*	*	3	.G.	JJJ	1	.	J	5	....G	JJJJF
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-Chromosome6	63067587	C	0	*	*	1	,	J	2	,g	JJ	6	.,,,t,	7JJJJJ	2	,t	JA
-Chromosome6	63455590	A	1	.	j	2	.-1C.	JJ	1	.-1C	J	0	*	*	0	*	*
-Chromosome6	63455591	C	1	.	k	2	*.	JJ	1	*	J	0	*	*	0	*	*
-Chromosome6	63481968	G	0	*	*	2	T.	JJ	0	*	*	1	T	J	1	.	J
-Chromosome6	63482031	C	0	*	*	2	T.	sJ	0	*	*	1	A	J	1	.	J
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-Chromosome6	63482086	A	0	*	*	2	G.	s`	0	*	*	1	G	s	1	.	\
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-Chromosome6	63527151	C	1	.	A	2	T.	FA	7	T......	JJFJJJJ	3	.T.	JJJ	1	T	J
-Chromosome6	63538763	G	1	A	J	0	*	*	0	*	*	1	.	F	2	.A	VJ
-Chromosome6	63538773	C	1	T	J	0	*	*	0	*	*	1	.	J	2	.T	eJ
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-Chromosome6	63645325	A	2	gt	JF	2	gg	JJ	0	*	*	0	*	*	1	c	7
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-Chromosome6	63645408	G	2	tt	JJ	2	c,	FF	0	*	*	1	.	s	0	*	*
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-Chromosome6	63709114	T	1	C	s	1	.	o	0	*	*	0	*	*	2	AC	os
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-Chromosome6	63831894	A	1	,	J	2	,t	JJ	0	*	*	0	*	*	1	t	J
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-Chromosome6	63932503	T	1	.-1A	F	0	*	*	0	*	*	1	A	J	1	.	A
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-Chromosome6	66014998	A	1	.	J	0	*	*	1	G	J	0	*	*	2	.G	JJ
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-Chromosome6	68310092	C	2	.T	FJ	0	*	*	0	*	*	1	T	F	1	.	J
-Chromosome6	68310128	C	2	.T	J<	0	*	*	0	*	*	1	T	F	1	.	F
-Chromosome6	68310141	C	2	.A	J7	0	*	*	0	*	*	1	A	J	1	.	J
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-Chromosome6	68367052	T	1	.-4CCCC	F	1	.	J	0	*	*	1	.-4CCCC	o	0	*	*
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-Chromosome6	69094165	C	1	T	s	0	*	*	4	T...	ssss	3	T..	sss	0	*	*
-Chromosome6	69094189	C	1	T	j	0	*	*	4	....	ssss	3	T..	s`s	0	*	*
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-Chromosome6	69332285	A	1	.	J	0	*	*	0	*	*	1	G	A	2	G,	FJ
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-Chromosome6	74558653	G	2	,,	JJ	5	a,,,,	JAAJF	6	aa,,,,	FJJJJJ	11	,,a,,,,,,,a	FJJJJJJJJ<J	9	,,,aa,,,a	7JJJJJJJJ
-Chromosome6	74566683	G	0	*	*	1	.	o	5	.AAAA	sssss	3	A..	ssj	7	....AAA	sso`sss
-Chromosome6	74725029	C	0	*	*	0	*	*	1	.	J	3	T..	JJJ	2	T.	J<
-Chromosome6	74725127	G	0	*	*	0	*	*	1	,	J	3	.a,	fJJ	2	a,	JF
-Chromosome6	75115572	T	1	.	s	1	C	\	0	*	*	2	.C	Vs	0	*	*
-Chromosome6	75115602	G	1	,	J	1	a	7	0	*	*	2	A,	sF	0	*	*
-Chromosome6	75115605	A	1	,	J	1	g	A	0	*	*	2	G,	sF	0	*	*
-Chromosome6	75187567	C	2	T.	oV	0	*	*	1	T	s	2	..	ss	0	*	*
-Chromosome6	75242768	A	2	.-2CC.-2CC	JJ	1	.-2CC	J	3	.-2CC..	JJF	2	..-2CC	jJ	3	.-2CC.-2CC.-2CC	JJJ
-Chromosome6	75245544	G	1	.	J	1	A	a	0	*	*	2	.A	Ja	0	*	*
-Chromosome6	75253977	C	2	TA	FJ	0	*	*	2	A.	FJ	2	..	JJ	2	.G	JF
-Chromosome6	75333677	A	2	g,	JJ	1	g	J	0	*	*	1	,	J	2	,g	JJ
-Chromosome6	75333727	A	2	g,	JJ	1	g	J	0	*	*	1	,	J	2	,g	JJ
-Chromosome6	75333733	G	3	t,,	JAJ	1	t	J	0	*	*	1	,	F	2	,t	AJ
-Chromosome6	75503990	C	1	,	<	2	T,	so	0	*	*	0	*	*	1	t	J
-Chromosome6	75652866	G	1	c	F	0	*	*	1	,	F	4	.,,,-1t	sJJJ	1	t	J
-Chromosome6	75714546	G	0	*	*	1	.	J	0	*	*	3	.AA	sJJ	1	A	J
-Chromosome6	75714573	C	0	*	*	1	.	J	0	*	*	3	.TT	sFF	1	T	J
-Chromosome6	75820361	T	0	*	*	1	,	F	1	g	7	0	*	*	2	,g	JJ
-Chromosome6	75887622	T	1	.-1G	s	0	*	*	1	,-1g	J	1	.	f	0	*	*
-Chromosome6	75913261	C	0	*	*	1	,	F	1	,-3aat	J	0	*	*	1	,-3aat	J
-Chromosome6	75988115	A	0	*	*	1	.-11ACTTGGTTAGT	S	1	.	J	0	*	*	1	.-11ACTTGGTTAGT	:
-Chromosome6	76206843	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	AF
-Chromosome6	76206994	C	0	*	*	0	*	*	1	,	J	2	A,	sJ	2	,a	JA
-Chromosome6	76206996	A	0	*	*	0	*	*	1	g	J	2	G,	sJ	2	,g	JF
-Chromosome6	76207011	T	0	*	*	0	*	*	1	c	J	2	G,	sJ	2	,g	AJ
-Chromosome6	76233963	T	0	*	*	4	,c,,	JJJF	1	,	J	2	,c	JJ	1	c	J
-Chromosome6	76294495	T	1	c	J	0	*	*	1	,	J	2	c,	JJ	0	*	*
-Chromosome6	76294501	A	1	g	J	0	*	*	1	,	J	2	g,	JJ	0	*	*
-Chromosome6	76294520	T	1	c	J	0	*	*	1	,	J	2	c,	JJ	0	*	*
-Chromosome6	76365057	A	0	*	*	0	*	*	1	,	F	1	G	s	2	g,	JJ
-Chromosome6	76411620	G	0	*	*	0	*	*	1	A	o	1	.	s	2	.A	os
-Chromosome6	76505157	C	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J	1	,-1t	F
-Chromosome6	76529450	T	0	*	*	0	*	*	1	.-5CGTGA	[	1	.	`	1	.-5CGTGA	J
-Chromosome6	76575961	T	2	,,	JJ	0	*	*	1	,-1a	F	1	,-1a	J	0	*	*
-Chromosome6	76784603	C	1	,	F	0	*	*	2	,t	<J	1	t	J	0	*	*
-Chromosome6	76791186	G	1	,	F	0	*	*	5	,,,a,	JJJJJ	0	*	*	4	,,,t	JFFJ
-Chromosome6	76825522	T	1	G	J	0	*	*	2	CC	JJ	2	C.	JJ	2	c.	sJ
-Chromosome6	76825818	C	3	A..	sos	1	,	s	1	G	j	0	*	*	1	A	s
-Chromosome6	76854900	G	2	a,	JJ	1	,	J	0	*	*	0	*	*	1	t	J
-Chromosome6	76855127	A	0	*	*	1	C	V	0	*	*	1	.	J	2	G.	JJ
-Chromosome6	76880783	C	1	,-1t	<	1	,-1t	F	1	,-1t	J	1	,-1t	J	0	*	*
-Chromosome6	76910527	G	8	.T...A..	JJJ<AJJJ	3	...	FJJ	14	.........T....	JJJJJJ<JJJJJ7J	0	*	*	14	......A.A.....	JJAJ<JF7JJJJ7J
-Chromosome6	76911118	A	8	,,c,g,,g	J77JJ7<7	3	,,,	FJF	15	,,,,,,,g,,,,,g,	AJA7FJJJJ<JJFAJ	0	*	*	12	,,,,,,,,,g,,	JJF7FJAJJ7<J
-Chromosome6	76911142	G	8	,aa,,,,,	JJ<JJJAJ	3	,a,	JFJ	14	,,,,,a,,,a,,,,	JJFFJJJJFJJJJJ	0	*	*	15	,,,,,,,,,,,,,,,	7JJ7JJ7JJJFJFJJ
-Chromosome6	76911172	A	8	,,g,,,,,	JJJJJF<J	3	,,,	FJJ	15	,,,,,,,,,,g,,,,	FJF<AJJJJJJJJFJ	0	*	*	14	,,g,,,,,,,,,,,	JJJJJFJJJ77FJJ
-Chromosome6	77037688	A	2	..	Ae	0	*	*	2	G.	JJ	2	GG	8J	0	*	*
-Chromosome6	77040531	G	0	*	*	0	*	*	1	.-3TCC	F	1	.-3TCC	J	2	.-3TCC.	JJ
-Chromosome6	77040600	G	0	*	*	0	*	*	1	.-2GA	B	1	.-6GAGAGA	<	2	.-6GAGAGA.-4GAGA	<>
-Chromosome6	77040808	C	0	*	*	0	*	*	1	,	J	1	,-2ta	A	2	,-2ta,	JJ
-Chromosome6	77112261	C	5	,,,,,	JJFJJ	4	,,t,	JJF<	9	,,,,,,,t,	JJ<JJAJJJ	9	,t,,t,t,,	JJJJJAJFJ	7	a,,t,,,	JFJFFJJ
-Chromosome6	77112323	A	5	,,t,t	JJJJF	3	,gt	JJJ	10	,,,,,,,,,t	FJJJFFJ<FJ	7	t,,t,t,	JFJJJJ<	7	g,,,,,t	JJJJJFF
-Chromosome6	77125108	A	2	,-1t,	FJ	3	,-1t,-1t,	AJJ	3	,-1t,-1t,-1t	FJJ	0	*	*	3	,-1t,-1t,	JJJ
-Chromosome6	77179125	G	0	*	*	2	,,	JJ	8	,a,,,,,,	JJJJJJJJ	4	a,,,	AJFJ	6	,,aa,,	JJJJJJ
-Chromosome6	77326754	A	2	TT	JJ	2	T.	FJ	1	.	J	0	*	*	0	*	*
-Chromosome6	77493461	A	1	T	F	0	*	*	3	..T	JJJ	2	..	FJ	0	*	*
-Chromosome6	77493463	T	1	.	F	0	*	*	3	.A.	JJJ	2	AA	7J	0	*	*
-Chromosome6	77493527	C	1	T	J	0	*	*	3	..T	JJJ	2	..	AJ	0	*	*
-Chromosome6	77493633	A	1	g	J	0	*	*	4	.gg,	sJJJ	3	.gg	sJJ	0	*	*
-Chromosome6	77493705	C	1	t	F	0	*	*	4	.,t,	jJJJ	3	.,a	oJJ	0	*	*
-Chromosome6	77493712	T	1	,	F	0	*	*	4	A,,a	eJJJ	3	.,a	sFJ	0	*	*
-Chromosome6	77493741	C	1	t	F	0	*	*	4	,t,,	JJJJ	3	.,,	sJJ	0	*	*
-Chromosome6	77673599	T	0	*	*	1	.-2CA	J	1	.	J	1	.-2CA	j	0	*	*
-Chromosome6	77693540	C	1	,	J	2	t,	JF	0	*	*	0	*	*	1	g	F
-Chromosome6	77826433	T	1	.-1A	J	0	*	*	1	.	J	0	*	*	1	.-1A	J
-Chromosome6	78045481	T	0	*	*	1	.	j	0	*	*	2	.G	MJ	1	G	J
-Chromosome6	78047275	A	1	t	J	4	.,,,	sJJF	0	*	*	0	*	*	3	,t,	JJF
-Chromosome6	78053167	C	0	*	*	0	*	*	2	..	sJ	2	.G	JJ	1	g	J
-Chromosome6	78091490	T	0	*	*	0	*	*	4	,,,,	JJJJ	2	g,	JJ	4	,c,,	JJFJ
-Chromosome6	78091512	G	0	*	*	0	*	*	4	,,,,	JJJJ	3	,t,	JJJ	4	,,t,	FJJJ
-Chromosome6	78097276	G	0	*	*	1	.	s	2	,t	FF	3	,t,	JJJ	0	*	*
-Chromosome6	78107316	A	0	*	*	0	*	*	1	g	J	2	,g	JJ	1	,	<
-Chromosome6	78307093	T	0	*	*	0	*	*	1	G	s	2	.A	ss	1	A	s
-Chromosome6	78359870	C	0	*	*	2	,,	A7	1	,-4ccaa	5	3	,,-4ccaa,-4ccaa	>57	4	,,-4ccaa,-4ccaa,-4ccaa	E555
-Chromosome6	78368947	A	1	.	J	2	.T	JJ	3	.TT	JJ7	3	T..	JJJ	6	T.TT..	JJJJJJ
-Chromosome6	78480127	C	1	t	J	3	,,t	JJJ	7	,,,,t,,	J7JA<JJ	2	..	sJ	6	,,,,,t	JAJFJJ
-Chromosome6	78480670	G	1	,	J	0	*	*	2	A.	Fk	2	A.	eJ	0	*	*
-Chromosome6	78480735	G	1	,	F	0	*	*	2	A.	Qs	2	.a	`<	0	*	*
-Chromosome6	78543183	G	2	A.	JJ	0	*	*	4	,A..	oJAJ	0	*	*	3	...	JJJ
-Chromosome6	78543189	A	2	T.	JJ	0	*	*	4	,T..	f<JJ	0	*	*	4	....	FJFJ
-Chromosome6	78543231	T	2	C.	JJ	0	*	*	3	C..	AJJ	1	C	J	4	....	FJFJ
-Chromosome6	78543289	C	2	T.	JF	1	T	J	4	T...	JAJJ	1	.	J	4	.T..	FJ7J
-Chromosome6	78699018	C	1	.	<	1	.-1A	J	0	*	*	0	*	*	1	.-1A	J
-Chromosome6	78854139	A	0	*	*	1	.	s	2	.G	JJ	0	*	*	2	G.	AJ
-Chromosome6	78854145	A	0	*	*	1	.	s	2	.C	JJ	0	*	*	2	C.	JJ
-Chromosome6	78854155	A	0	*	*	1	.	s	1	G	J	0	*	*	2	G.	JJ
-Chromosome6	78864971	G	0	*	*	0	*	*	1	A	s	2	,A	Js	1	,	<
-Chromosome6	79031452	C	1	.-1T	9	1	.-1T	=	1	.-1T	9	0	*	*	0	*	*
-Chromosome6	79104423	T	1	.-25CCATGCGGCGCTGGAACAGATAGAC	]	2	.-25CCATGCGGCGCTGGAACAGATAGAC.-25CCATGCGGCGCTGGAACAGATAGAC	N]	1	.-25CCATGCGGCGCTGGAACAGATAGAC	O	0	*	*	0	*	*
-Chromosome6	79159275	A	2	,t	77	1	g	J	0	*	*	0	*	*	2	,,	JJ
-Chromosome6	79199862	A	0	*	*	5	....C	<JJJJ	0	*	*	1	.	J	1	C	J
-Chromosome6	79199909	A	0	*	*	5	....G	FJJJJ	0	*	*	1	.	J	1	G	J
-Chromosome6	79199945	C	0	*	*	6	....T.	AJJJJJ	0	*	*	1	.	J	1	T	J
-Chromosome6	79199967	T	0	*	*	4	..G.	JJJj	0	*	*	1	.	J	1	G	J
-Chromosome6	79200148	A	0	*	*	3	,,g	JJF	0	*	*	2	,.	JJ	1	g	A
-Chromosome6	79200248	C	0	*	*	2	t,	JF	0	*	*	1	.	R	1	t	J
-Chromosome6	79313827	C	0	*	*	1	.-3GAA	s	0	*	*	2	..-3GAA	JJ	1	.	s
-Chromosome6	79357297	A	1	.-1G	J	0	*	*	1	.-1G	J	0	*	*	1	.-1G	s
-Chromosome6	79457260	A	0	*	*	1	,	J	2	g,	JJ	2	g,	JJ	4	,,g,	JFJJ
-Chromosome6	79495741	A	0	*	*	2	..	JJ	2	g.	sJ	1	G	J	0	*	*
-Chromosome6	79528839	T	1	.-1G	J	0	*	*	1	.	J	0	*	*	2	.-1G,	JJ
-Chromosome6	79529284	T	0	*	*	2	..	ko	6	.C...,	sssssJ	2	C.	sj	0	*	*
-Chromosome6	79553847	C	1	T	J	1	.	J	0	*	*	2	.T	J5	0	*	*
-Chromosome6	79553885	T	1	A	J	1	.	<	0	*	*	2	.A	JJ	0	*	*
-Chromosome6	79558312	G	1	.	J	1	A	F	3	AA.	JJJ	0	*	*	0	*	*
-Chromosome6	79638561	G	1	.-8CTCTCTCT	J	1	.	J	0	*	*	0	*	*	1	.-10CTCTCTCTCT	J
-Chromosome6	79666718	A	2	T.	FJ	1	.	J	1	T	J	0	*	*	0	*	*
-Chromosome6	79666723	T	2	.G	<F	1	G	J	1	.	A	0	*	*	0	*	*
-Chromosome6	79666727	G	2	.T	7F	1	T	J	1	.	J	0	*	*	0	*	*
-Chromosome6	79682571	A	0	*	*	0	*	*	3	...-1G	JJJ	1	.	J	1	.-1G	F
-Chromosome6	79682572	G	0	*	*	0	*	*	3	..*	JJJ	1	.	J	1	*	F
-Chromosome6	79682591	C	0	*	*	0	*	*	3	..G	JFJ	1	.	J	1	G	<
-Chromosome6	79682600	G	0	*	*	0	*	*	3	..A	JFF	1	.	J	1	A	7
-Chromosome6	79682652	C	0	*	*	0	*	*	3	..T	JJJ	1	.	J	1	T	<
-Chromosome6	79801217	T	1	.-1C	F	1	,-1c	J	1	,	F	0	*	*	0	*	*
-Chromosome6	79861429	C	0	*	*	3	t,,	JJJ	1	,	J	0	*	*	1	t	F
-Chromosome6	79861453	A	0	*	*	3	t,,	JJJ	1	,	J	0	*	*	1	t	A
-Chromosome6	79935182	G	2	t,	JJ	3	,t,	F<J	0	*	*	0	*	*	1	,	J
-Chromosome6	80127387	G	0	*	*	0	*	*	1	A	J	3	..-7TCCCTAA.	JJJ	1	.-7TCCCTAA	J
-Chromosome6	80127552	G	0	*	*	2	,-7accctaa,	<F	2	.,	C7	3	a,,	A<s	3	a.a	JV<
-Chromosome6	80127564	T	0	*	*	2	,-1a,-1a	JJ	2	,-1a,-1a	AA	4	c,-1a,,-1a	JJsJ	2	.-1A,	J7
-Chromosome6	80139826	A	8	tccccccc	JJJJJJFJ	1	,	J	5	t,ccc	JJJJJ	5	ccccc	JJJJJ	9	tctctcccc	JJJJJFJJJ
-Chromosome6	80150634	T	2	C.	AJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome6	80150650	A	2	C.	7F	1	C	V	0	*	*	0	*	*	1	.	J
-Chromosome6	80207111	A	0	*	*	1	.	7	1	T	J	2	T.	FJ	0	*	*
-Chromosome6	80207328	T	0	*	*	1	,	7	1	c	J	2	,c	JJ	0	*	*
-Chromosome6	80280789	A	3	,-1c,-1c,-1c	FJJ	1	,-1c	J	3	,-1c,-1c.	J<s	0	*	*	2	,-1c,-1c	JF
-Chromosome6	80284209	C	1	,	J	1	,-3tgg	J	1	,-3tgg	A	0	*	*	0	*	*
-Chromosome6	80293527	A	0	*	*	2	.G	sF	2	,.	qF	0	*	*	1	G	J
-Chromosome6	80314002	C	0	*	*	0	*	*	1	.-4ACGT	<	2	.-4ACGT.-4ACGT	<<	1	.-4ACGT	<
-Chromosome6	80504111	C	0	*	*	1	T	s	2	.T	ss	0	*	*	1	.	s
-Chromosome6	80539407	T	2	,c	JF	2	cc	JJ	3	cc,	JJF	1	,	J	3	cc,	JJF
-Chromosome6	80569549	A	0	*	*	1	.-1T	s	0	*	*	1	.-1T	j	1	.	s
-Chromosome6	80581525	C	1	.-1T	F	0	*	*	1	.	J	0	*	*	1	.-1T	J
-Chromosome6	80586552	A	0	*	*	3	..T	JJF	2	T.	sA	0	*	*	1	.	F
-Chromosome6	80586563	C	0	*	*	3	G.G	JJJ	2	G.	sJ	0	*	*	1	.	F
-Chromosome6	80629825	G	0	*	*	2	..	sJ	0	*	*	1	T	J	2	.T	JJ
-Chromosome6	80718089	G	1	A	J	0	*	*	1	.	A	2	A.	F=	0	*	*
-Chromosome6	80718159	C	1	T	J	0	*	*	1	.	J	2	T.	FJ	0	*	*
-Chromosome6	80718195	G	1	.	F	0	*	*	1	A	J	2	.A	oJ	0	*	*
-Chromosome6	80729181	A	0	*	*	2	C.	Jc	1	.	J	0	*	*	1	C	J
-Chromosome6	80729253	T	0	*	*	2	.*	Fo	1	*	<	0	*	*	1	,	F
-Chromosome6	80729254	A	0	*	*	2	.*	7o	1	*	<	0	*	*	1	,	J
-Chromosome6	80731833	A	2	TT	JJ	0	*	*	2	T.	JF	0	*	*	1	.	<
-Chromosome6	80731841	T	2	.-10GATATGAATA.-10GATATGAATA	66	0	*	*	2	.-10GATATGAATA.	6J	0	*	*	1	.	J
-Chromosome6	80731910	G	2	TT	FJ	0	*	*	2	T.	JJ	0	*	*	1	.	<
-Chromosome6	80736524	A	1	.	J	0	*	*	0	*	*	1	.-19CCTGGCCATTCCCCGCCCG	5	1	.-10CCTGGCCATT	6
-Chromosome6	80736612	A	0	*	*	1	.-3GCC	J	0	*	*	1	.	J	1	.-3GCC	J
-Chromosome6	80777812	C	1	.-3TTT	J	0	*	*	1	.-2TT	o	0	*	*	1	.-2TT	J
-Chromosome6	80784258	C	1	.-1A	s	1	.-1A	J	0	*	*	1	.	J	0	*	*
-Chromosome6	80795524	C	3	..T	JJJ	0	*	*	2	.t	JJ	2	..	kJ	0	*	*
-Chromosome6	80806207	C	4	,t,t	JJJF	0	*	*	1	,	F	0	*	*	1	t	J
-Chromosome6	80811284	T	1	c	J	1	,	J	3	,,c	JJJ	0	*	*	0	*	*
-Chromosome6	80811291	C	1	,	J	1	t	J	3	t,,	JJJ	0	*	*	0	*	*
-Chromosome6	80857204	G	11	...+1T........+2TT	JFJJJJJJJJJ	0	*	*	7	...+1T.+1T.-1T..	JJ7HJJJ	2	..-1T	JJ	8	........+1T	JJJFJJJJ
-Chromosome6	80862541	A	2	T.	JJ	1	.	J	5	.T...	JJJJF	0	*	*	1	T	J
-Chromosome6	80865279	G	1	.-3TGT	9	1	.-3TGT	9	1	.-3TGT	9	0	*	*	3	.-3TGT.-3TGT.-3TGT	999
-Chromosome6	81181376	C	0	*	*	1	T	J	0	*	*	2	T.	JJ	1	.	J
-Chromosome6	81181467	T	0	*	*	1	A	s	0	*	*	2	A.	ss	1	.	s
-Chromosome6	81181480	G	0	*	*	1	A	s	0	*	*	2	A.	ss	1	.	s
-Chromosome6	81181552	G	0	*	*	1	t	J	0	*	*	2	,t	JJ	1	,	J
-Chromosome6	81181569	C	0	*	*	1	,	J	0	*	*	2	t,	JJ	1	t	J
-Chromosome6	81182376	C	0	*	*	1	.	J	1	T	J	2	.T	JJ	2	.T	JJ
-Chromosome6	81189157	A	0	*	*	1	,	J	4	,ggg	JJJJ	0	*	*	1	g	J
-Chromosome6	81197677	C	1	,-3ttt	g	1	.-3TTT	]	2	.-3TTT.-3TTT	]]	0	*	*	1	.-3TTT	]
-Chromosome6	81260891	A	1	.-1C	J	2	..	J<	0	*	*	1	.-1C	J	0	*	*
-Chromosome6	81261001	C	2	,A	Js	1	A	J	0	*	*	1	,	J	0	*	*
-Chromosome6	81261002	G	2	,C	Js	1	C	J	0	*	*	1	,	J	0	*	*
-Chromosome6	81261004	A	2	,G	Js	1	G	J	0	*	*	1	,	J	0	*	*
-Chromosome6	81261005	T	2	,C	Js	1	C	J	0	*	*	1	,	J	0	*	*
-Chromosome6	81261016	G	2	t.	Js	1	.	J	0	*	*	1	t	J	0	*	*
-Chromosome6	81261024	A	2	,T	Js	1	T	e	0	*	*	1	,	J	0	*	*
-Chromosome6	81261036	C	2	,G	Js	1	G	s	0	*	*	2	,.	Jo	0	*	*
-Chromosome6	81263692	A	0	*	*	1	.-1C	J	1	.-1C	J	1	.	W	3	.-1C..-1C	7JJ
-Chromosome6	81264012	A	0	*	*	0	*	*	1	,$	J	1	,-4cggg	F	1	,-4cggg	F
-Chromosome6	81269086	A	0	*	*	2	.G	JJ	1	,	s	1	G	F	0	*	*
-Chromosome6	81269112	G	0	*	*	2	A.	JJ	1	a	s	1	.	7	0	*	*
-Chromosome6	81271195	T	0	*	*	2	a,	FA	1	,	F	1	a	J	0	*	*
-Chromosome6	81280368	C	0	*	*	1	.-1T	s	1	.-1T	7	0	*	*	4	....-1T	JJJJ
-Chromosome6	81295217	T	1	c	J	5	,,,c,	JFJJJ	2	,c	JJ	1	,	J	0	*	*
-Chromosome6	81314228	T	0	*	*	0	*	*	2	C.	JJ	1	C	J	1	.	J
-Chromosome6	81328201	T	1	.	J	0	*	*	1	G	F	2	G.	FJ	0	*	*
-Chromosome6	81328229	G	1	.	J	0	*	*	1	T	J	2	T.	JF	0	*	*
-Chromosome6	81328249	G	1	.	F	0	*	*	1	C	7	2	C.	JF	0	*	*
-Chromosome6	81328929	G	0	*	*	2	,,	JJ	0	*	*	2	a.	FF	1	a	J
-Chromosome6	81356747	G	0	*	*	2	..	FA	0	*	*	2	.A	JF	1	A	J
-Chromosome6	81356774	C	0	*	*	2	.T	JJ	0	*	*	2	.G	JJ	1	G	s
-Chromosome6	81356834	G	0	*	*	2	..	`s	0	*	*	2	.T	oJ	1	T	A
-Chromosome6	81358304	T	1	,-1c	J	1	,-1c	7	1	.-1C	j	0	*	*	0	*	*
-Chromosome6	81439417	A	0	*	*	1	G	J	1	.	A	2	.g	A6	0	*	*
-Chromosome6	81452096	G	0	*	*	1	.-1A	J	0	*	*	1	.	J	1	.-1A	J
-Chromosome6	81514486	G	1	A	8	0	*	*	0	*	*	2	.A	J8	1	.	J
-Chromosome6	81514500	A	1	G	J	0	*	*	0	*	*	2	.G	JJ	1	.	J
-Chromosome6	81514503	C	1	A	J	0	*	*	0	*	*	2	.A	AJ	1	.	J
-Chromosome6	81514504	T	1	.	J	0	*	*	0	*	*	2	A.	JJ	1	A	J
-Chromosome6	81514511	A	1	.	J	0	*	*	0	*	*	2	.-1T.	FJ	1	.-1T	F
-Chromosome6	81514563	G	1	A	J	0	*	*	0	*	*	2	.A	AJ	1	.	<
-Chromosome6	81514575	G	1	.	J	0	*	*	0	*	*	2	C.	FF	1	C	J
-Chromosome6	81514648	T	1	c	J	0	*	*	0	*	*	2	c,	JF	1	,	J
-Chromosome6	81514668	A	1	t	J	0	*	*	0	*	*	2	t,	JJ	1	,	J
-Chromosome6	81514691	G	1	a	J	0	*	*	0	*	*	2	a,	JA	1	,	J
-Chromosome6	81514713	T	1	,	J	0	*	*	0	*	*	2	,,-1a	J<	1	,-1a	D
-Chromosome6	81514714	A	1	,	J	0	*	*	0	*	*	2	,*	JA	1	*	A
-Chromosome6	81553071	C	2	A.	so	0	*	*	3	.T,	ssJ	1	.	s	2	.T	Vs
-Chromosome6	81553107	A	2	c,	JJ	0	*	*	3	.g,	oJJ	1	,	J	2	,g	AJ
-Chromosome6	81620143	G	2	.*	7I	1	.	F	1	A	<	0	*	*	0	*	*
-Chromosome6	81620144	C	2	.*	FI	2	T.	A7	1	.	<	0	*	*	0	*	*
-Chromosome6	81664753	T	0	*	*	2	C.	JJ	2	C.	Js	0	*	*	1	.	J
-Chromosome6	81738646	A	0	*	*	0	*	*	2	G.	ja	2	.G	sa	2	..	`o
-Chromosome6	81741774	A	0	*	*	2	.C	JJ	2	.C	FJ	0	*	*	1	C	J
-Chromosome6	81741906	A	2	,g	FJ	2	G.	ss	3	G.g	soF	0	*	*	1	.	o
-Chromosome6	81741942	G	2	a,	JF	2	,a	JJ	3	aa,	JJJ	0	*	*	1	,	J
-Chromosome6	82084753	G	0	*	*	1	.	s	1	,-2aa	J	0	*	*	1	,-2aa	J
-Chromosome6	82086843	G	2	A,	JJ	1	*	J	1	.	J	0	*	*	0	*	*
-Chromosome6	82086844	C	2	T,	JJ	1	*	J	1	.	J	0	*	*	0	*	*
-Chromosome6	82087495	G	0	*	*	1	c	J	1	.	o	2	,c	JJ	0	*	*
-Chromosome6	82087511	C	0	*	*	1	,	J	1	g	J	2	g,	JJ	0	*	*
-Chromosome6	82098792	T	0	*	*	0	*	*	1	,	J	2	C.	so	2	C,	JJ
-Chromosome6	82100904	T	2	.c	JJ	0	*	*	1	.	J	0	*	*	1	C	7
-Chromosome6	82109493	G	0	*	*	0	*	*	1	.-1C	J	1	.-1C	J	1	,	J
-Chromosome6	82163744	G	0	*	*	1	.	k	1	A	f	1	,-1t	j	0	*	*
-Chromosome6	82196049	G	1	.	s	0	*	*	2	.C	ss	0	*	*	1	C	j
-Chromosome6	82196818	G	0	*	*	2	a,	JJ	2	a.	Jo	1	,	J	0	*	*
-Chromosome6	82224258	T	1	,-1a	J	1	,	J	2	,-1a,-1a	JJ	0	*	*	0	*	*
-Chromosome6	82353799	C	1	.-1A	F	0	*	*	2	..-1A	JJ	0	*	*	1	.-1A	F
-Chromosome6	82368761	C	2	.A	JA	0	*	*	1	A	J	1	.	J	0	*	*
-Chromosome6	82368782	C	2	T.	J<	0	*	*	1	.	J	1	T	J	0	*	*
-Chromosome6	82380511	C	0	*	*	0	*	*	3	TT.	JJJ	1	T	A	3	...	JJJ
-Chromosome6	82380576	A	0	*	*	0	*	*	4	GG..	sooj	1	G	s	3	.GG	oso
-Chromosome6	82380602	T	0	*	*	0	*	*	4	AA..	sssa	1	A	o	3	...	sss
-Chromosome6	82380663	C	0	*	*	0	*	*	4	.,gg	oJJJ	1	a	J	3	,gg	JJJ
-Chromosome6	82507008	A	2	.G	AF	1	G	J	1	.	J	0	*	*	2	.G	JA
-Chromosome6	82590775	G	2	a,	FF	3	a,,	FFF	2	,a	FF	2	,a	FF	3	aaa	FFF
-Chromosome6	82597656	G	0	*	*	0	*	*	3	.A.	JJ<	3	AA.	JJJ	1	.	J
-Chromosome6	82597832	T	0	*	*	0	*	*	3	,,,	JJJ	3	,cc	JJJ	1	c	J
-Chromosome6	82597835	T	0	*	*	0	*	*	3	c,c	FJJ	3	c,,	JJJ	1	c	J
-Chromosome6	82707547	A	0	*	*	0	*	*	2	G.	Js	1	.	s	1	G	J
-Chromosome6	82715433	G	0	*	*	1	T	s	2	t,	Jk	1	.	J	0	*	*
-Chromosome6	82715448	G	0	*	*	1	A	s	2	a,	Jj	1	T	J	0	*	*
-Chromosome6	82739737	A	5	..-2GGG..	JJJsF	0	*	*	0	*	*	1	.	s	1	G	J
-Chromosome6	82800252	C	0	*	*	2	t.	JJ	0	*	*	2	T.	Jo	1	.	s
-Chromosome6	82868393	A	1	g	J	2	g,	<J	0	*	*	0	*	*	2	,,	JJ
-Chromosome6	82904412	A	1	T	f	0	*	*	2	T,	oJ	1	.	J	3	..T	jss
-Chromosome6	82904423	G	1	a	J	0	*	*	2	,a	JJ	0	*	*	3	a,,	JJJ
-Chromosome6	82904429	A	1	g	J	0	*	*	2	,g	JJ	0	*	*	3	g,,	JJJ
-Chromosome6	82957053	C	1	.	F	1	.-3GGT	J	0	*	*	1	,-3ggt	J	0	*	*
-Chromosome6	82963360	C	2	T.	JA	0	*	*	2	.A	J7	1	.	J	0	*	*
-Chromosome6	82963393	C	2	A.	AF	0	*	*	2	T.	sF	1	.	J	0	*	*
-Chromosome6	83034576	T	1	.	F	0	*	*	2	CC	FF	0	*	*	3	C..	FFF
-Chromosome6	83034592	A	1	G	J	0	*	*	2	..	JJ	0	*	*	3	.GG	JJJ
-Chromosome6	83034624	G	1	.	J	0	*	*	2	A.	JJ	0	*	*	3	A..	JJJ
-Chromosome6	83034750	A	1	g	J	0	*	*	2	,,	JJ	0	*	*	4	g,gg	AJJJ
-Chromosome6	83034751	A	1	g	J	0	*	*	2	,,	JJ	0	*	*	4	g,gg	AJJJ
-Chromosome6	83034814	T	1	a	F	0	*	*	2	,,	JJ	0	*	*	4	a,aa	AJJJ
-Chromosome6	83075808	A	1	.	J	0	*	*	0	*	*	1	.-1G	G	1	.-1G	G
-Chromosome6	83119965	T	0	*	*	1	A	J	0	*	*	1	*	>	4	A..A	JFJJ
-Chromosome6	83174735	C	3	t,,	JJ7	0	*	*	4	,aa,	JJJ<	0	*	*	3	,,,	JAJ
-Chromosome6	83174764	A	3	,gg	JJ7	1	,	F	4	gg,,	JJJF	0	*	*	2	gg	JJ
-Chromosome6	83244934	G	0	*	*	0	*	*	2	T.	FF	1	.	F	1	A	?
-Chromosome6	83245011	G	0	*	*	0	*	*	3	A..	FJJ	1	.	A	2	..-1A	FJ
-Chromosome6	83367639	G	1	.	J	0	*	*	2	.A	JJ	4	.A..	JJVs	0	*	*
-Chromosome6	83367651	C	1	G	J	0	*	*	2	..	JJ	4	..G.	JJos	0	*	*
-Chromosome6	83367710	T	1	,	J	0	*	*	2	cc	JJ	4	,.c,	JsJJ	0	*	*
-Chromosome6	83367745	G	1	,	J	0	*	*	2	,-1t,-1t	JJ	4	,.,-1t,	JsFF	0	*	*
-Chromosome6	83367755	G	1	,	J	0	*	*	2	t,	JJ	3	.t,	sJ<	0	*	*
-Chromosome6	83367757	C	1	,	J	0	*	*	2	g,	JJ	3	.ga	sF7	0	*	*
-Chromosome6	83367758	G	1	,	J	0	*	*	2	aa	JF	3	.a,	sJJ	0	*	*
-Chromosome6	83367785	T	1	,	F	0	*	*	2	gg	JJ	3	.g,	sJA	0	*	*
-Chromosome6	83367813	G	1	,	J	0	*	*	2	,-5gcttt,	;J	2	,-5gcttt,	;7	0	*	*
-Chromosome6	83373899	A	0	*	*	1	.-3GAC	K	1	.-3GAC	K	0	*	*	1	.-3GAC	K
-Chromosome6	83376318	G	0	*	*	1	.-1A	R	1	.-1A	s	0	*	*	1	.-1A	s
-Chromosome6	83452696	T	0	*	*	1	C	s	0	*	*	2	.c	sJ	2	C.	JJ
-Chromosome6	83452697	A	0	*	*	1	G	o	0	*	*	2	.g	sJ	2	G.	JJ
-Chromosome6	83452703	T	0	*	*	1	C	k	0	*	*	2	.c	sJ	2	C.	JJ
-Chromosome6	83452757	C	0	*	*	1	,-1t	J	1	,-1t	J	2	.,	oJ	2	.,-1t	sJ
-Chromosome6	83452784	A	0	*	*	0	*	*	1	,-1t	I	2	.,	sJ	2	.,-1t	sI
-Chromosome6	83452793	G	0	*	*	0	*	*	1	a	J	1	,	J	2	.a	jJ
-Chromosome6	83507046	T	3	G.G	JJJ	0	*	*	3	GG.	JJJ	1	.	J	4	.GGG	JJJJ
-Chromosome6	83540916	A	0	*	*	0	*	*	1	,	J	2	g,	JJ	1	g	J
-Chromosome6	83561671	A	1	g	J	0	*	*	0	*	*	2	g,	J7	1	,	J
-Chromosome6	83562932	G	2	,-1t,	JJ	0	*	*	1	.	M	0	*	*	1	,-1t	J
-Chromosome6	83590502	A	0	*	*	1	c	J	2	c,	JJ	0	*	*	2	,,	J<
-Chromosome6	83689470	A	0	*	*	1	^].	<	2	.-1T.	<J	0	*	*	3	.-1T..	JJJ
-Chromosome6	83689780	A	0	*	*	1	g	J	2	,g	JJ	0	*	*	3	gg,	JJ<
-Chromosome6	83689802	C	0	*	*	1	a	J	2	,a	JJ	0	*	*	3	aa,	JJF
-Chromosome6	83689844	G	0	*	*	1	,	F	2	t,	JJ	0	*	*	3	,,t	FF<
-Chromosome6	83689858	G	0	*	*	1	,	J	2	a,	J<	0	*	*	3	,,a	JJF
-Chromosome6	83689873	G	0	*	*	1	c	J	2	,c	JJ	0	*	*	3	cc,	JFA
-Chromosome6	83689885	A	0	*	*	1	,	J	2	,-1t,	>J	0	*	*	3	,,,-1t	JJF
-Chromosome6	83761695	T	1	.-1G	>	1	.-1G	k	0	*	*	1	.-1G	A	0	*	*
-Chromosome6	83768833	A	2	G.	AJ	0	*	*	2	G.	JJ	0	*	*	1	.	J
-Chromosome6	83768893	T	2	C.	FJ	0	*	*	2	C.	JF	0	*	*	1	.	J
-Chromosome6	83769227	C	2	,a	F7	0	*	*	2	,a	JJ	0	*	*	1	a	A
-Chromosome6	83769257	T	2	a,	<J	0	*	*	2	a,	JJ	0	*	*	1	,	F
-Chromosome6	84012672	T	1	G	F	3	...	JFJ	0	*	*	0	*	*	2	G.	JF
-Chromosome6	84203601	C	0	*	*	0	*	*	3	..T	JJJ	1	.	J	1	T	J
-Chromosome6	84203609	T	0	*	*	0	*	*	3	..C	JJJ	1	.	J	1	C	J
-Chromosome6	84203620	A	0	*	*	0	*	*	3	..G	JJJ	1	.	J	1	G	J
-Chromosome6	84203627	T	0	*	*	0	*	*	3	..A	JJJ	1	.	A	1	A	J
-Chromosome6	84203656	A	0	*	*	0	*	*	3	..C	JJJ	1	.	J	1	C	J
-Chromosome6	84203663	A	0	*	*	0	*	*	3	..T	JJF	1	.	J	1	T	J
-Chromosome6	84203688	T	0	*	*	0	*	*	3	..C	ses	1	.	s	1	C	s
-Chromosome6	84203762	G	0	*	*	0	*	*	3	,,a	JJA	1	,	J	1	a	J
-Chromosome6	84203809	T	0	*	*	0	*	*	3	,,c	JJJ	1	,	J	1	c	J
-Chromosome6	84275441	G	3	.A.	JJA	0	*	*	3	...	JJJ	2	.A	JF	2	.A	JJ
-Chromosome6	84448215	A	0	*	*	2	T.	ss	1	.	s	2	.T	os	0	*	*
-Chromosome6	84448261	T	0	*	*	2	.c	oJ	1	.	s	2	.c	oJ	0	*	*
-Chromosome6	84451561	G	2	A.	JJ	1	.	J	1	T	J	0	*	*	0	*	*
-Chromosome6	84451564	A	2	T.	JJ	1	.	J	1	T	J	0	*	*	0	*	*
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-Chromosome6	84463362	C	0	*	*	1	A	o	2	A.	ss	1	.	s	0	*	*
-Chromosome6	84476097	C	1	,	A	0	*	*	1	,-1t	J	1	,-1t	A	0	*	*
-Chromosome6	84497117	A	1	.	J	0	*	*	1	T	J	0	*	*	3	..T	JJo
-Chromosome6	84518688	T	1	c	J	2	,,	JJ	3	c,,	J<J	0	*	*	0	*	*
-Chromosome6	84579603	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	JJ
-Chromosome6	84579814	T	0	*	*	0	*	*	1	,	J	1	c	J	2	,c	JJ
-Chromosome6	84665623	A	0	*	*	0	*	*	1	.	F	1	G	<	2	.G	JJ
-Chromosome6	84665893	A	0	*	*	0	*	*	1	,	J	1	,-3att	8	2	,,-3att	F8
-Chromosome6	84755133	A	0	*	*	0	*	*	1	.	s	1	G	s	2	G.	ss
-Chromosome6	84755148	C	0	*	*	0	*	*	1	.	o	1	T	s	2	T.	ss
-Chromosome6	84755176	G	0	*	*	0	*	*	1	.	j	1	C	s	2	C.	oo
-Chromosome6	84785207	T	0	*	*	0	*	*	1	.-1C	e	1	,-1c	e	1	.	5
-Chromosome6	85096098	T	1	.	j	3	.A.	s5s	0	*	*	1	A	?	0	*	*
-Chromosome6	85096168	T	0	*	*	0	*	*	1	.-1A	J	1	.	V	2	..-1A	JF
-Chromosome6	85096233	C	0	*	*	0	*	*	1	.	J	1	.-6AAAAAA	V	3	.-2AA.-5AAAAA.	JJF
-Chromosome6	85120433	G	0	*	*	1	.	J	2	A.	JJ	0	*	*	1	A	J
-Chromosome6	85120438	C	0	*	*	1	.	J	2	T.	JJ	0	*	*	1	T	J
-Chromosome6	85120486	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
-Chromosome6	85120523	T	0	*	*	1	.	J	2	.-1A.	JJ	0	*	*	1	.-1A	J
-Chromosome6	85120537	T	0	*	*	1	.	J	2	C.	JJ	0	*	*	1	C	J
-Chromosome6	85120745	G	0	*	*	1	a	J	2	,,	JJ	0	*	*	1	,-1a	J
-Chromosome6	85120759	T	0	*	*	1	,	F	2	c,	JJ	0	*	*	1	c	J
-Chromosome6	85120790	A	0	*	*	1	,	J	2	c,	AJ	0	*	*	1	c	J
-Chromosome6	85195779	C	1	A	F	0	*	*	0	*	*	1	.	J	2	.T	JA
-Chromosome6	85274528	A	0	*	*	1	g	<	0	*	*	1	,	J	4	,gg,	JJJJ
-Chromosome6	85278628	G	0	*	*	3	.AA	fJJ	1	A	J	0	*	*	1	.	J
-Chromosome6	85278672	C	0	*	*	3	.TT	sss	1	T	s	0	*	*	1	.	J
-Chromosome6	85282418	T	0	*	*	0	*	*	2	,c	7F	1	,	J	1	c	G
-Chromosome6	85285955	A	1	.	A	0	*	*	2	..-4GCTC	JJ	1	.-4GCTC	J	0	*	*
-Chromosome6	85285970	T	1	.	J	0	*	*	2	.C	J>	1	C	:	0	*	*
-Chromosome6	85286221	G	1	,-4tcga	J	0	*	*	3	.-4TCGA,-4tcga,-4tcga	S::	1	,-4tcga	F	0	*	*
-Chromosome6	85298062	G	1	.	J	2	A.	Js	0	*	*	1	A	J	0	*	*
-Chromosome6	85470834	G	0	*	*	0	*	*	1	.	J	1	C	J	2	.C	FA
-Chromosome6	85590837	G	1	.	J	1	C	s	0	*	*	0	*	*	2	.C	JJ
-Chromosome6	85778217	G	2	,,	JJ	0	*	*	0	*	*	2	a,	JJ	2	aa	AJ
-Chromosome6	85793975	G	0	*	*	0	*	*	4	A.AA	FFFA	2	A.	<<	1	.	F
-Chromosome6	85887688	T	1	,	J	1	c	J	0	*	*	0	*	*	5	,c,,,	JJAFJ
-Chromosome6	86371403	A	0	*	*	2	G.+1G	JE	0	*	*	2	T.	JJ	2	G.	JJ
-Chromosome6	86371758	G	0	*	*	2	,a	AJ	0	*	*	2	,,	JJ	2	,a	JJ
-Chromosome6	86390729	A	2	,t	JJ	1	c	J	2	t,	JA	2	tt	JJ	3	t,,	FJJ
-Chromosome6	86449705	C	2	.T	AJ	1	T	e	0	*	*	0	*	*	1	.	J
-Chromosome6	86588906	G	2	.A	J<	0	*	*	2	A.	AA	0	*	*	6	......	F7JJJJ
-Chromosome6	86588935	C	3	T..	FFA	0	*	*	2	..	AF	1	T	J	5	.T...	AJJ<F
-Chromosome6	86588951	A	3	G..	JJ7	0	*	*	1	.	J	1	G	J	5	.G...	JJJJJ
-Chromosome6	86589374	C	3	tt,	F7J	0	*	*	2	,,	JA	0	*	*	6	,,t,,,	<J7FJF
-Chromosome6	86590641	G	1	t	J	0	*	*	2	,a	J7	0	*	*	2	,,	AJ
-Chromosome6	86592029	G	2	A.	JJ	0	*	*	0	*	*	1	.	J	2	A.	JJ
-Chromosome6	86593308	G	2	..	ss	1	A	`	0	*	*	0	*	*	2	A.	`j
-Chromosome6	86593368	C	2	,t	JJ	1	t	J	0	*	*	0	*	*	2	,,	JJ
-Chromosome6	86817430	A	0	*	*	0	*	*	2	g,	JJ	1	,	J	1	g	J
-Chromosome6	86817431	T	0	*	*	0	*	*	2	c,	7J	1	,	J	1	c	J
-Chromosome6	86848867	T	1	,	A	2	,-1g,	JJ	0	*	*	1	,-1g	J	0	*	*
-Chromosome6	87083236	A	1	g	J	1	,	J	0	*	*	0	*	*	3	,,g	JJJ
-Chromosome6	87123900	A	1	.	J	0	*	*	2	GG	sj	0	*	*	2	G.	JJ
-Chromosome6	87124191	T	1	g	J	0	*	*	0	*	*	1	,	J	2	,g	FJ
-Chromosome6	87173671	C	0	*	*	1	.	j	1	T	J	0	*	*	3	T..	JJF
-Chromosome6	87173701	A	0	*	*	1	.	`	1	G	F	0	*	*	2	G.	<7
-Chromosome6	87174140	C	1	,	J	0	*	*	1	g	<	0	*	*	2	,t	<C
-Chromosome6	87174156	C	1	,	J	0	*	*	1	t	F	0	*	*	3	,,t	JJF
-Chromosome6	87299333	T	1	,	J	2	,c	JF	1	c	J	0	*	*	0	*	*
-Chromosome6	87299415	A	1	,	J	2	,g	JJ	1	g	J	0	*	*	0	*	*
-Chromosome6	87309846	C	0	*	*	1	.	o	1	.-1G	E	1	.-1G	F	0	*	*
-Chromosome6	87310528	T	1	.-2TG	U	0	*	*	1	.-2TG	;	0	*	*	1	.-2TG	;
-Chromosome6	87313086	G	0	*	*	1	.-1A	J	1	.-1A	J	1	.-1A	F	1	.-1A	A
-Chromosome6	87313261	G	0	*	*	0	*	*	1	,-2ga	6	1	,	F	1	,-2ga	6
-Chromosome6	87646922	C	0	*	*	1	,	s	1	.-4CAAG	5	1	.-4CAAG	I	0	*	*
-Chromosome6	87771982	G	0	*	*	0	*	*	3	,tt	JJJ	1	T	s	2	,t	JJ
-Chromosome6	87776233	A	2	.G	JJ	0	*	*	2	..	JJ	1	G	J	0	*	*
-Chromosome6	87776255	G	2	.-1A.-2AA	JJ	0	*	*	2	.-1A.-1A	JJ	1	.-2AA	J	0	*	*
-Chromosome6	87869912	T	2	C.	7F	1	C	<	0	*	*	0	*	*	1	.	J
-Chromosome6	87876612	A	2	.G	sJ	0	*	*	1	.	F	1	G	J	0	*	*
-Chromosome6	87876617	A	2	.G	sJ	0	*	*	1	.	J	1	G	F	0	*	*
-Chromosome6	87876621	G	2	.A	oJ	0	*	*	1	.	F	1	A	A	0	*	*
-Chromosome6	87913753	G	6	.A....	JJJJJJ	10	........A.	JJJJF7JJJJ	12	........A...	JJJJJJJJJJJJ	2	T.	JJ	18	...A..A....A......	JFJJJJJJFJJJJJJJJJ
-Chromosome6	87913770	G	6	....T.	JJJJJJ	10	.........A	JJJJJ<JJJJ	11	...T....AAA	JJJJJJJJJJJ	2	.T	JJ	18	.T......A.........	FJJJJJJFJJJJJJJJJJ
-Chromosome6	87979342	C	1	g	J	1	.	s	2	.g	sJ	0	*	*	0	*	*
-Chromosome6	87979370	T	1	c	J	1	.	s	2	.c	sJ	0	*	*	0	*	*
-Chromosome6	87988513	A	0	*	*	1	.	s	2	.G	JJ	2	GG	JJ	0	*	*
-Chromosome6	87988514	C	0	*	*	1	.	s	2	.T	<J	2	TT	JJ	0	*	*
-Chromosome6	87988525	C	0	*	*	1	.	s	2	..-2AT	<J	2	.-2AT.-2AT	JJ	0	*	*
-Chromosome6	87988554	C	0	*	*	1	.	s	2	.T	FJ	2	TT	JJ	0	*	*
-Chromosome6	87988572	A	0	*	*	1	G	s	2	G.	JJ	2	..	so	0	*	*
-Chromosome6	87988581	G	0	*	*	1	A	j	2	A.	AJ	2	..	so	0	*	*
-Chromosome6	87993044	G	1	.	J	1	A	J	2	A.	JJ	0	*	*	0	*	*
-Chromosome6	87993202	T	1	,	J	1	g	J	2	g,	JJ	0	*	*	0	*	*
-Chromosome6	88062599	A	1	.	J	0	*	*	1	.-1C	J	1	.-1C	J	0	*	*
-Chromosome6	88202346	C	0	*	*	1	.	s	2	.T	js	1	T	s	0	*	*
-Chromosome6	88202373	G	0	*	*	1	C	o	2	C.	ss	1	.	s	0	*	*
-Chromosome6	88202374	C	0	*	*	1	.	s	2	.T	ss	1	T	s	0	*	*
-Chromosome6	88202399	T	0	*	*	1	.	`	2	,c	FJ	1	c	J	0	*	*
-Chromosome6	88271629	C	1	,	J	1	t	J	2	,t	JJ	0	*	*	0	*	*
-Chromosome6	88312608	C	0	*	*	0	*	*	2	.T	s7	1	T	s	1	.	F
-Chromosome6	88626506	G	1	*	?	1	.	F	0	*	*	0	*	*	1	.-4GACT	:
-Chromosome6	88629732	A	1	C	J	0	*	*	4	CC.,	JFJs	2	C.	JJ	0	*	*
-Chromosome6	88629747	G	1	A	J	0	*	*	4	AA.,	JJJs	2	A.	FJ	0	*	*
-Chromosome6	88629931	A	1	g	<	0	*	*	3	gg,	JJJ	2	,g	JJ	0	*	*
-Chromosome6	88713416	A	1	G	J	0	*	*	2	.G	JJ	0	*	*	2	G.	JJ
-Chromosome6	88713527	C	1	.	F	0	*	*	2	.T	JE	0	*	*	2	T.	EJ
-Chromosome6	88713721	C	1	,	J	0	*	*	2	,t	JJ	0	*	*	2	t,	JJ
-Chromosome6	89101944	T	4	C...	JJJA	0	*	*	0	*	*	1	.	s	3	..C	JkF
-Chromosome6	89320906	C	1	.-3AGT	F	1	.-3AGT	J	1	.	J	0	*	*	0	*	*
-Chromosome6	89474657	C	0	*	*	1	.-1A	J	1	.-1A	J	0	*	*	1	.-1A	F
-Chromosome6	89505601	T	2	C.	JJ	1	.	A	0	*	*	0	*	*	2	.C	JJ
-Chromosome6	89523999	C	3	.T.	JJJ	0	*	*	1	.	J	0	*	*	1	T	<
-Chromosome6	89584125	A	0	*	*	1	t	J	0	*	*	1	g	J	2	.g	sJ
-Chromosome6	89678869	G	2	,a	JJ	1	a	J	0	*	*	1	,	J	0	*	*
-Chromosome6	89731579	C	0	*	*	0	*	*	1	t	J	1	.	j	2	.t	oJ
-Chromosome6	89731629	G	0	*	*	0	*	*	1	,	J	1	a	F	2	c,	JJ
-Chromosome6	89731687	T	0	*	*	0	*	*	1	,	J	1	c	J	2	*,	HJ
-Chromosome6	89731693	C	0	*	*	0	*	*	1	t	J	1	,	A	2	,t	FJ
-Chromosome6	89821080	T	4	C.CC	FJJJ	4	CC.C	JJJJ	2	..	JJ	5	C..C.	JJFJJ	14	.C...CCC....CC	JJJJJJJFJJJJJJ
-Chromosome6	89821108	T	4	...C	7JJJ	4	CC.C	JAJJ	2	..	JJ	5	..C..	JJJJJ	14	.CCCC...C.CC.C	JJJJFJJJAFJJAJ
-Chromosome6	89959201	A	1	.	J	3	..G	JJJ	0	*	*	0	*	*	1	G	J
-Chromosome6	89959206	G	1	A	J	3	A..	JJJ	0	*	*	0	*	*	1	.	J
-Chromosome6	90360796	T	0	*	*	1	C	J	0	*	*	3	.C.	FJJ	1	.	J
-Chromosome6	90676701	T	0	*	*	1	,	A	1	g	F	2	g,	FF	0	*	*
-Chromosome6	90732341	C	0	*	*	1	g	F	1	,	J	2	,g	sJ	0	*	*
-Chromosome6	90752757	A	1	T	J	2	.T	7F	0	*	*	2	..	AF	0	*	*
-Chromosome6	90753046	G	1	t	J	2	,t	JJ	0	*	*	3	,,,	JJJ	0	*	*
-Chromosome6	90798404	A	0	*	*	0	*	*	1	.	s	2	.C	JJ	1	C	J
-Chromosome6	90798411	A	0	*	*	0	*	*	1	G	s	2	G.	JJ	1	.	F
-Chromosome6	90798431	C	0	*	*	0	*	*	1	.	s	2	.T	JJ	1	T	J
-Chromosome6	90798459	G	0	*	*	0	*	*	1	.	s	2	.C	Js	1	T	F
-Chromosome6	90798470	G	0	*	*	0	*	*	1	.	s	2	.C	Js	1	C	J
-Chromosome6	90798472	G	0	*	*	0	*	*	1	.	s	2	.A	Js	1	A	J
-Chromosome6	90899333	G	0	*	*	2	A.	sJ	1	.	F	1	A	J	0	*	*
-Chromosome6	90981116	G	1	.	J	0	*	*	0	*	*	2	.T	s:	1	T	>
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-Chromosome6	91060620	A	0	*	*	1	T	J	3	TTC	JJJ	1	.	J	0	*	*
-Chromosome6	91078615	C	2	t,	7J	0	*	*	1	,	J	0	*	*	3	t,,	FJJ
-Chromosome6	91078630	T	2	cc	JJ	0	*	*	1	,	J	0	*	*	3	,c,	A<J
-Chromosome6	91079851	C	1	,	@	2	t,	JJ	0	*	*	0	*	*	1	t	J
-Chromosome6	91105279	G	1	.-2AT	s	1	,-2at	J	0	*	*	1	,-2at	F	0	*	*
-Chromosome6	91271711	A	1	.-1T	J	0	*	*	0	*	*	1	.	J	1	.-1T	J
-Chromosome6	91338690	G	1	.-1A	J	1	.	J	2	.-1A.-1A	Ja	1	.-1A	o	0	*	*
-Chromosome6	91548052	C	0	*	*	3	.T.	sss	2	..	ss	0	*	*	2	.T	sj
-Chromosome6	91548079	C	0	*	*	3	gt,	JJJ	2	,t	JB	0	*	*	2	t,	JJ
-Chromosome6	91548083	C	0	*	*	3	,,-1t,	JJJ	2	,-1t,	JJ	0	*	*	2	,,	JJ
-Chromosome6	91725169	A	0	*	*	1	.	F	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome6	91828514	C	1	.	J	0	*	*	2	T.	JF	0	*	*	1	T	J
-Chromosome6	92143205	A	1	.-2GG	A	1	.	s	0	*	*	3	..-2GG.-2GG	sJJ	4	...-2GG.-2GG	ssJJ
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-Chromosome6	92143207	G	1	*	<	1	.	s	0	*	*	3	.**	oJJ	4	..**	ssJJ
-Chromosome6	92143232	C	0	*	*	1	.	s	0	*	*	3	.TT	oJJ	4	T.TT	osJJ
-Chromosome6	92332290	G	2	A.	JJ	0	*	*	2	.A	JJ	2	A.	JF	2	A.	J<
-Chromosome6	92332596	A	2	,t	JJ	0	*	*	2	,,	FJ	2	g,	JF	2	g,	JJ
-Chromosome6	92332628	C	2	,a	JJ	0	*	*	2	,,	JJ	2	t,	FJ	2	t,	JJ
-Chromosome6	92332635	T	2	gg	JJ	0	*	*	2	,,	JJ	2	cg	JJ	2	cg	JJ
-Chromosome6	92575231	C	1	,-1t	J	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*
-Chromosome6	92638751	G	3	A..	sJJ	1	A	k	0	*	*	1	.	J	0	*	*
-Chromosome6	92771476	G	1	.	J	2	.T	JA	1	A	F	0	*	*	0	*	*
-Chromosome6	92771677	G	1	,-1t	J	2	,-1t,	JJ	1	,	J	0	*	*	0	*	*
-Chromosome6	92803228	C	0	*	*	0	*	*	1	,	J	3	T,,	kJJ	4	,,t,	JJJJ
-Chromosome6	92803250	T	1	c	J	0	*	*	0	*	*	5	,,,,c	FAJJJ	5	,,,,,	JJJJF
-Chromosome6	92805067	A	1	,	J	0	*	*	1	*	A	0	*	*	2	,g	JJ
-Chromosome6	92882368	C	0	*	*	1	t	J	1	A	U	0	*	*	2	A.	f9
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-Chromosome6	92897796	C	1	.	J	1	T	J	0	*	*	2	,T	JJ	0	*	*
-Chromosome6	92897809	G	1	.	<	1	A	s	0	*	*	2	,A	JJ	0	*	*
-Chromosome6	92945665	C	0	*	*	2	.A	so	2	..	fs	2	A,	oF	0	*	*
-Chromosome6	92945726	A	0	*	*	2	G.	so	2	.G	js	2	.,	sF	0	*	*
-Chromosome6	93014266	A	1	G	o	1	,	s	0	*	*	0	*	*	3	GG.	fRs
-Chromosome6	93132887	T	2	c,	<J	0	*	*	0	*	*	1	c	J	2	.,	oJ
-Chromosome6	93200289	A	0	*	*	1	,-1t	<	0	*	*	1	,-1t	J	1	,	J
-Chromosome6	93264112	C	0	*	*	0	*	*	2	G,	JJ	1	g	F	1	,	J
-Chromosome6	93331265	A	0	*	*	2	.G	JJ	1	G	J	1	.	J	0	*	*
-Chromosome6	93331270	T	0	*	*	2	.C	JJ	1	C	J	1	.	J	0	*	*
-Chromosome6	93331280	T	0	*	*	2	.C	JJ	1	C	J	1	.	J	0	*	*
-Chromosome6	93331335	G	0	*	*	2	..-1A	si	1	.-1A	i	1	.	s	0	*	*
-Chromosome6	93331336	A	0	*	*	2	.*	si	1	*	i	1	.	s	0	*	*
-Chromosome6	93331343	C	0	*	*	2	.T	ss	1	T	j	1	.	s	0	*	*
-Chromosome6	93331362	C	0	*	*	2	..-4CGCG	sM	1	.-4CGCG	M	1	.	s	0	*	*
-Chromosome6	93567559	G	0	*	*	1	.	J	2	TC	sJ	1	C	7	0	*	*
-Chromosome6	93658203	G	0	*	*	3	.A.	o`s	2	.A	s`	1	.	s	0	*	*
-Chromosome6	93686709	T	0	*	*	1	a	J	2	,,	JJ	1	g	J	2	,a	JJ
-Chromosome6	93762312	C	1	T	p	0	*	*	0	*	*	1	.	o	2	T.	ps
-Chromosome6	93884828	G	1	.	J	2	..-2AA	JJ	0	*	*	0	*	*	1	.-2AA	J
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-Chromosome6	94122780	C	0	*	*	1	,$	A	2	,T	Js	1	T	j	0	*	*
-Chromosome6	94247040	A	0	*	*	1	.-1T	J	1	.-1T	J	0	*	*	2	..	FF
-Chromosome6	94302592	C	0	*	*	1	,-2ta	J	1	,-2ta	A	1	,	<	0	*	*
-Chromosome6	94466858	A	2	,t	JJ	4	,.,,	AoF<	0	*	*	0	*	*	2	t,	J7
-Chromosome6	94466893	A	3	,t,	JJJ	4	,.,,	JkJJ	0	*	*	0	*	*	2	t,	JF
-Chromosome6	94567692	C	1	.$	b	0	*	*	0	*	*	2	.$a	gJ	1	a	J
-Chromosome6	94660201	C	0	*	*	1	T	o	1	.	s	2	t.	sj	0	*	*
-Chromosome6	94674963	A	0	*	*	0	*	*	1	.	s	2	T.	sJ	1	T	7
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-Chromosome6	94824874	A	1	.	J	1	G	J	0	*	*	2	.G	JF	0	*	*
-Chromosome6	94824934	C	1	.	F	1	T	<	0	*	*	2	.T	JF	0	*	*
-Chromosome6	94825119	T	1	,	J	1	g	J	0	*	*	2	,g	JF	0	*	*
-Chromosome6	94825173	A	1	,	J	1	g	J	0	*	*	2	,g	JJ	0	*	*
-Chromosome6	94829894	A	1	.-8TTAGAAGT	8	0	*	*	1	.-8TTAGAAGT	O	0	*	*	1	.-8TTAGAAGT	O
-Chromosome6	94836157	T	0	*	*	1	.	F	1	.-2TA	5	0	*	*	2	.-2TA.-2TA	55
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-Chromosome6	100712576	C	3	A.A	JJJ	1	A	J	0	*	*	4	.AA.	FFAJ	3	...	JFJ
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-Chromosome6	110395125	C	1	.	<	0	*	*	2	.T	JJ	0	*	*	1	T	J
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-Chromosome6	110395188	G	1	T	J	0	*	*	2	T.	JJ	0	*	*	1	.	J
-Chromosome6	110395367	G	1	a	<	0	*	*	2	a,	JJ	0	*	*	2	,,	FJ
-Chromosome6	110395397	T	1	c	J	0	*	*	2	c,	JF	0	*	*	2	,,	J7
-Chromosome6	110395416	G	1	,	F	0	*	*	2	,c	JJ	0	*	*	2	c,	JJ
-Chromosome6	110532561	G	0	*	*	1	,	J	2	,a	JJ	1	a	J	0	*	*
-Chromosome6	110536091	T	1	,-1g	A	0	*	*	1	,-1g	s	4	,,,,	FFss	0	*	*
-Chromosome6	110536126	A	1	,	A	0	*	*	1	t	o	5	,,t,,	<JJss	0	*	*
-Chromosome6	110536145	A	1	,	7	0	*	*	2	,+1t.+1T	AF	4	,,,+1t,	JJFs	0	*	*
-Chromosome6	110536161	A	1	,	J	0	*	*	1	g	s	5	,,gt,	JJJss	0	*	*
-Chromosome6	110740473	A	2	,,	JJ	0	*	*	1	t	J	2	t,	JJ	2	,g	FF
-Chromosome6	110920087	G	0	*	*	0	*	*	3	C..	JJJ	1	.	J	1	C	7
-Chromosome6	110920093	T	0	*	*	0	*	*	3	C..	JJJ	1	.	F	1	C	J
-Chromosome6	111023850	G	1	.	J	0	*	*	1	.-12AGCGGCCGTACC	H	0	*	*	1	.-12AGCGGCCGTACC	G
-Chromosome6	111029443	T	2	.G	JJ	1	.	J	1	G	J	0	*	*	0	*	*
-Chromosome6	111206805	C	1	.-1T	F	1	.-1T	s	1	.-1T	s	0	*	*	0	*	*
-Chromosome6	111317665	G	1	T	A	0	*	*	3	T..	JJF	0	*	*	2	.T	JF
-Chromosome6	111317836	T	1	c	A	0	*	*	3	,c,	FJJ	0	*	*	2	c,	FJ
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-Chromosome6	111479059	T	0	*	*	1	.	J	1	C	F	0	*	*	2	C.	JF
-Chromosome6	111479234	C	0	*	*	1	g	J	1	,	J	0	*	*	2	,g	JF
-Chromosome6	111697031	A	1	G	J	0	*	*	0	*	*	1	.	J	2	.G	JJ
-Chromosome6	111697046	C	1	A	F	0	*	*	0	*	*	1	.	J	2	.A	JJ
-Chromosome6	111697058	A	1	G	J	0	*	*	0	*	*	1	.	A	2	.G	JJ
-Chromosome6	111697063	C	1	A	J	0	*	*	0	*	*	1	.	F	2	.A	JF
-Chromosome6	111697084	C	1	T	J	0	*	*	0	*	*	1	.	J	2	.T	JJ
-Chromosome6	111697086	A	1	.	J	0	*	*	0	*	*	1	.-6TGTCTC	J	2	.-6TGTCTC.	JA
-Chromosome6	111697118	C	1	T	J	0	*	*	0	*	*	1	.	J	2	.T	JJ
-Chromosome6	111768852	T	1	.	J	2	.G	JJ	3	..G	JJJ	0	*	*	0	*	*
-Chromosome6	111769008	A	1	g	J	2	,,	JJ	3	,,g	JJJ	0	*	*	0	*	*
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-Chromosome6	112005951	C	0	*	*	0	*	*	1	,	J	3	..T	FJJ	4	..T.	JJJJ
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-Chromosome6	112005980	G	0	*	*	0	*	*	1	,	J	3	..T	kso	4	.-1C...	ksos
-Chromosome6	112006012	G	0	*	*	0	*	*	1	,	J	3	C..	oss	4	.C..	osos
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-Chromosome6	112208725	T	0	*	*	0	*	*	1	C	J	1	,	s	2	,C	sJ
-Chromosome6	112208744	T	0	*	*	0	*	*	1	A	s	1	,	s	2	,A	ss
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-Chromosome6	112208829	A	0	*	*	0	*	*	1	G	s	1	,	s	2	,G	ss
-Chromosome6	112265580	C	1	T	F	1	,	s	2	.T	FF	0	*	*	0	*	*
-Chromosome6	112504393	G	2	.T	JJ	0	*	*	0	*	*	1	.	s	1	T	F
-Chromosome6	112545871	C	1	.-2TT	J	1	.-2TT	J	0	*	*	2	.-2TT,-2tt	JF	0	*	*
-Chromosome6	112545930	C	1	.	J	1	,-16gcatataactctaagt	6	0	*	*	2	G.	ss	0	*	*
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-Chromosome6	112657727	C	0	*	*	0	*	*	1	.	s	1	A	o	3	..A	sss
-Chromosome6	112657733	C	0	*	*	0	*	*	1	.	s	1	A	s	3	..A	sss
-Chromosome6	112681195	T	1	.	J	0	*	*	0	*	*	4	C...	JJJj	2	.C	JJ
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-Chromosome6	112890090	A	1	.	J	1	C	J	0	*	*	0	*	*	2	.$C	<J
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-Chromosome6	113074803	T	0	*	*	2	,c	J7	1	c	F	0	*	*	1	,	J
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-Chromosome6	113153059	G	1	.	J	0	*	*	1	A	J	3	AA.	JJJ	0	*	*
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-Chromosome6	113705273	C	0	*	*	2	.+2AT,+2at	JJ	2	.+2AT.+2AT	JJ	1	.+2AT	J	0	*	*
-Chromosome6	113856680	C	1	,-1a	J	1	.-1A	V	0	*	*	0	*	*	1	,-1a	J
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-Chromosome6	114251366	G	0	*	*	2	C.	JJ	1	C	J	0	*	*	2	..	JJ
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-Chromosome6	114380721	A	1	G	J	0	*	*	3	..G	ggJ	0	*	*	2	..	cn
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-Chromosome6	114699812	T	0	*	*	1	.	j	0	*	*	3	.cc	jJJ	2	cc	JJ
-Chromosome6	114943071	C	15	..,,,,,,,,,,,,t	js77JJFJJFJJ<FA	8	.,,,t,,,	sJFJJJJJ	10	.t,,,,,,,,	sJJAJFAJ<F	8	ta,,,,,,	JJJFFJAJ	17	,,,,,,,,,,,t,,,,,	JJJJJJJJJJJAFJFJ<
-Chromosome6	115003114	C	0	*	*	3	Tt.	fJs	2	,,	JJ	2	,t	JJ	0	*	*
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-Chromosome6	115397433	A	0	*	*	1	.-6CGGTGG	J	0	*	*	1	.-6CGGTGG	j	3	.-6CGGTGG..	FAJ
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-Chromosome6	117056203	G	6	,,,,,t	JJJJJA	5	t,,,,	FJJJJ	4	a,,,	JFFJ	7	,tt,,,,	JJFJJJJ	6	,,,,,,	JFJJJF
-Chromosome6	117081091	T	0	*	*	2	.C	JJ	1	.-2GA	J	1	.	J	0	*	*
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-Chromosome6	117984956	G	1	,	J	0	*	*	0	*	*	1	a	F	2	,a	JJ
-Chromosome6	118238689	C	0	*	*	3	.+1A.+1A.+1A	sss	1	.	s	2	.+1A.	Vo	0	*	*
-Chromosome6	118249804	A	3	.-1T.-1T.-1T	JJJ	1	.-1T	J	1	.-1T	F	0	*	*	0	*	*
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-Chromosome6	118249845	A	3	G..	JJJ	1	G	J	1	.	J	0	*	*	0	*	*
-Chromosome6	118249872	G	3	A..	FJJ	1	A	J	1	.	J	0	*	*	0	*	*
-Chromosome6	118249920	C	3	T..	aqq	1	T	s	1	,	F	0	*	*	0	*	*
-Chromosome6	118249921	T	3	.CC	Rhq	1	.	s	1	c	F	0	*	*	0	*	*
-Chromosome6	118296347	A	2	.G	JJ	0	*	*	2	.G	JJ	0	*	*	2	GG	JJ
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-Chromosome6	137286702	T	0	*	*	3	,cc	JJJ	0	*	*	2	C.	sJ	1	c	J
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-Chromosome6	142425239	A	3	CC.	A<J	0	*	*	2	C.	JJ	1	.	s	0	*	*
-Chromosome6	142460254	C	3	,g,	JJJ	0	*	*	0	*	*	1	,	J	1	t	J
-Chromosome6	142543606	G	0	*	*	1	a	A	2	a.	Fs	0	*	*	1	.	s
-Chromosome6	142543621	C	0	*	*	1	,-2gt	A	2	,-2gt.	Js	0	*	*	1	.-2GT	s
-Chromosome6	142588447	A	3	..G	ssJ	1	.	s	0	*	*	1	G	s	0	*	*
-Chromosome6	142588456	A	3	..C	ssF	1	.	s	0	*	*	1	C	s	0	*	*
-Chromosome6	142588496	T	3	,,c	JJJ	1	,	J	0	*	*	1	c	J	0	*	*
-Chromosome6	142627030	T	2	.C	JJ	1	.	J	2	C.	JJ	1	C	J	0	*	*
-Chromosome6	142627043	G	2	.A	JJ	1	.	<	2	A.	JJ	1	A	J	0	*	*
-Chromosome6	142627178	T	2	,a	JJ	1	,	F	2	a,	JJ	1	a	J	0	*	*
-Chromosome6	142627209	A	2	,g	JJ	1	,	J	2	g,	JJ	1	g	J	0	*	*
-Chromosome6	142641092	T	1	C	?	0	*	*	2	C.	J7	0	*	*	1	.	J
-Chromosome6	142641270	T	1	a	J	0	*	*	2	a.	Js	0	*	*	2	a,	JJ
-Chromosome6	142682351	G	1	.	F	0	*	*	1	C	<	0	*	*	2	C.	JJ
-Chromosome6	142682590	G	1	,	J	0	*	*	1	a	F	0	*	*	2	a,	JF
-Chromosome6	142682619	A	1	,	F	0	*	*	1	t	J	0	*	*	2	t,	JJ
-Chromosome6	142682651	C	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*	2	,-1t,-1t	JJ
-Chromosome6	142682677	G	1	,	J	0	*	*	1	a	F	0	*	*	2	a,	JJ
-Chromosome6	142682685	C	1	,	J	0	*	*	1	t	J	0	*	*	2	t,	JJ
-Chromosome6	142682713	T	1	,	J	0	*	*	1	,-1g	H	0	*	*	2	,-1g,	HJ
-Chromosome6	142682714	G	1	,	J	0	*	*	1	*	H	0	*	*	2	*,	HJ
-Chromosome6	142767745	C	9	,,,t,,,,,	JJJJJJJJJ	1	t	J	5	t,,,,	JJJFJ	1	,	J	5	t,,,,	JJJJJ
-Chromosome6	142863600	T	2	,-1g,-1g	JJ	2	,-1g,-1g	FF	3	,-1g,-1g,-1g	JJJ	0	*	*	2	,-1g,-1g	J<
-Chromosome6	142955321	A	1	c	J	0	*	*	0	*	*	3	,cc	JJJ	1	,	J
-Chromosome6	143060038	G	0	*	*	1	.	J	2	c.	Js	1	C	s	0	*	*
-Chromosome6	143198119	G	1	A	F	0	*	*	0	*	*	2	..	JJ	2	.A	FJ
-Chromosome6	143198141	T	1	G	J	0	*	*	0	*	*	2	..	JJ	2	.G	<J
-Chromosome6	143219661	G	0	*	*	1	T	J	3	TT.	JJJ	2	..	<J	3	T.T	JJJ
-Chromosome6	143346450	C	1	,-2ta	J	1	,	J	1	,-2ta	J	0	*	*	0	*	*
-Chromosome6	143398828	A	1	g	J	0	*	*	2	,$G	As	2	,g	J;	0	*	*
-Chromosome6	143443287	G	0	*	*	0	*	*	1	C	F	2	T.	JF	1	.	J
-Chromosome6	143443288	G	0	*	*	0	*	*	1	.	J	2	.C	JJ	1	C	J
-Chromosome6	143443318	G	0	*	*	0	*	*	1	T	J	2	.A	JJ	1	.	J
-Chromosome6	143443332	G	0	*	*	0	*	*	1	A	J	2	.T	JJ	1	.	J
-Chromosome6	143553267	A	2	,-1g,-1g	JJ	0	*	*	1	,-1g	A	1	,-1g	J	1	,-1g	J
-Chromosome6	143776589	G	0	*	*	3	...	JJJ	2	AA	JF	0	*	*	3	.AA	JJJ
-Chromosome6	143840284	T	0	*	*	0	*	*	1	C	J	2	..	JJ	3	.CC	JJJ
-Chromosome6	143840561	T	0	*	*	0	*	*	1	c	J	2	,c	<J	3	c,c	JJF
-Chromosome6	143888799	C	1	,	J	3	,a,	JJF	0	*	*	0	*	*	1	a	J
-Chromosome6	143904234	G	3	A.A	JJJ	1	.	s	0	*	*	0	*	*	1	A	F
-Chromosome6	143904996	C	1	a	J	2	,a	JJ	0	*	*	0	*	*	1	,	<
-Chromosome6	143906341	C	3	tt,	JJA	0	*	*	1	,	J	1	t	J	0	*	*
-Chromosome6	143907269	A	0	*	*	0	*	*	2	CC	JJ	1	.	J	2	.C	JJ
-Chromosome6	143936418	T	2	G.	JJ	1	G	J	8	..GGGGG.	JJJJJJJJ	2	..	JJ	4	.G.G	JFJJ
-Chromosome6	144064369	A	0	*	*	0	*	*	2	C.	Fs	1	C	J	2	C.	Fs
-Chromosome6	144064374	A	0	*	*	0	*	*	2	G.	Fs	1	G	J	2	..	Js
-Chromosome6	144064420	T	0	*	*	0	*	*	2	C.	os	1	C	`	2	..	js
-Chromosome6	144074161	T	0	*	*	1	c	J	2	.c	sF	0	*	*	1	,	J
-Chromosome6	144460526	T	2	..	JJ	0	*	*	2	.G	Js	0	*	*	3	G..	J7F
-Chromosome6	144460527	T	2	AA	FJ	0	*	*	2	..	Js	0	*	*	2	.A	JJ
-Chromosome6	144460552	G	2	..	JA	0	*	*	2	.A	Js	0	*	*	3	A..	JAF
-Chromosome6	144460570	G	2	..	JJ	0	*	*	2	.A	Js	0	*	*	3	A..	JAJ
-Chromosome6	144460573	G	2	..	JJ	0	*	*	2	.T	Js	0	*	*	2	T.	JJ
-Chromosome6	144460590	G	2	..	JA	0	*	*	2	.A	Js	0	*	*	3	A..	J7J
-Chromosome6	144460591	C	2	AA	JF	0	*	*	2	A.	Js	0	*	*	3	.AA	<F<
-Chromosome6	144487216	A	0	*	*	3	GG.	JJf	2	G.	FJ	2	..	JJ	0	*	*
-Chromosome6	144529523	C	1	,-6tatata	J	1	,	J	1	,-6tatata	J	0	*	*	2	,-6tatata,-6tatata	JJ
-Chromosome6	144639358	C	0	*	*	1	.	s	1	A	J	0	*	*	2	.A	sJ
-Chromosome6	144639359	T	0	*	*	1	.	s	1	A	J	0	*	*	2	.A	sJ
-Chromosome6	144639375	C	0	*	*	1	.	s	1	G	J	0	*	*	2	.G	sJ
-Chromosome6	144639416	A	0	*	*	1	,	J	1	T	J	0	*	*	2	,T	JJ
-Chromosome6	144719884	G	1	.-3GCA	O	1	.	s	0	*	*	0	*	*	2	,-3gca.-3GCA	OO
-Chromosome6	144776907	C	1	,	J	1	t	J	0	*	*	0	*	*	2	,-9acctgacaa,	CJ
-Chromosome6	144930712	C	0	*	*	1	.-1T	s	1	.-1T	s	1	.-1T	s	0	*	*
-Chromosome6	144930782	A	0	*	*	1	,-2ac	;	1	,-2ac	;	1	,-2ac	;	0	*	*
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-Chromosome6	145086537	A	0	*	*	1	G	J	2	G.	JJ	0	*	*	1	.	J
-Chromosome6	145104999	C	1	t	J	0	*	*	2	t,	JJ	2	,,	JJ	0	*	*
-Chromosome6	145125561	C	0	*	*	0	*	*	2	..	JJ	1	T	J	4	T...	JJJF
-Chromosome6	145125587	C	0	*	*	0	*	*	2	..	JJ	2	A.	JJ	4	..A.	JJJJ
-Chromosome6	145125619	T	0	*	*	0	*	*	2	C.	JJ	2	.C	JJ	4	....	sJJJ
-Chromosome6	145125846	G	0	*	*	1	,	J	3	a,,	JJJ	2	a,	JJ	2	,a	JA
-Chromosome6	145178456	A	2	.G	JJ	1	G	F	2	..	AA	0	*	*	0	*	*
-Chromosome6	145178466	C	2	.G	JJ	1	G	7	2	.G	FF	0	*	*	0	*	*
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-Chromosome6	145178468	C	2	.T	JJ	1	T	J	2	.T	FF	0	*	*	0	*	*
-Chromosome6	145178584	C	1	t	J	1	,	F	2	,t	JF	0	*	*	0	*	*
-Chromosome6	145178592	T	1	,	J	1	c	J	2	c,	JA	0	*	*	0	*	*
-Chromosome6	145178597	T	1	,	J	1	g	J	2	g,	JJ	0	*	*	0	*	*
-Chromosome6	145178613	G	2	,a	JJ	1	,	J	2	c,	JJ	0	*	*	0	*	*
-Chromosome6	145178616	C	2	t,	JJ	1	,	J	2	tt	JJ	0	*	*	0	*	*
-Chromosome6	145178622	A	2	,g	JJ	1	g	J	2	g,	JJ	0	*	*	0	*	*
-Chromosome6	145178626	C	2	t,	JF	1	,	J	2	,t	AA	0	*	*	0	*	*
-Chromosome6	145178698	A	2	,g	JJ	1	g	J	1	,	J	0	*	*	0	*	*
-Chromosome6	145178710	T	2	,c	JJ	1	c	J	1	,	J	0	*	*	0	*	*
-Chromosome6	145202057	A	0	*	*	0	*	*	2	.G	JJ	1	G	F	4	GG..	JJJJ
-Chromosome6	145202058	A	0	*	*	1	.	F	2	.G	FJ	1	G	F	4	GG..	JJJJ
-Chromosome6	145202257	C	0	*	*	0	*	*	2	t,	JJ	1	,	J	4	,,tt	JJJJ
-Chromosome6	145238408	G	0	*	*	1	,	J	1	a	7	0	*	*	2	,a	7J
-Chromosome6	145251367	A	0	*	*	0	*	*	1	G	V	2	C$G	Js	4	.GG$G	sGJQ
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-Chromosome6	145382362	T	0	*	*	0	*	*	1	.	J	2	A.	JJ	1	A	J
-Chromosome6	145382415	T	0	*	*	0	*	*	1	.	J	2	C.	JJ	1	C	J
-Chromosome6	145391638	A	1	.	J	0	*	*	2	GG	JJ	3	G..	sJJ	0	*	*
-Chromosome6	145394073	C	0	*	*	1	,	F	0	*	*	1	t	F	2	,t	JF
-Chromosome6	145398680	G	0	*	*	1	a	J	0	*	*	1	.	s	2	,a	JA
-Chromosome6	145398691	G	0	*	*	1	a	J	0	*	*	1	.	j	2	,a	JA
-Chromosome6	145398750	C	0	*	*	1	a	J	0	*	*	1	.	e	2	,a	JF
-Chromosome6	145433332	G	0	*	*	2	a.	Jo	2	,,	JJ	2	,a	JJ	0	*	*
-Chromosome6	145434927	A	4	,,,,	JJJJ	3	C,,	sJJ	2	t,	JA	7	,tct,,,	JFJFJJ<	4	,t,t	JJFJ
-Chromosome6	145437119	T	0	*	*	1	A	J	0	*	*	3	A..	FsJ	3	..A	JJJ
-Chromosome6	145437187	G	0	*	*	1	A	k	0	*	*	3	A..	sso	3	...	sss
-Chromosome6	145437229	C	0	*	*	1	t	F	0	*	*	3	,t,	JFF	3	,,t	JJF
-Chromosome6	145494853	A	2	.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT	GF	0	*	*	2	..	JJ	0	*	*	1	.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT	<
-Chromosome6	145498907	A	1	,	F	2	,c	F<	0	*	*	1	c	<	0	*	*
-Chromosome6	145550803	T	9	,.,,,gg,g	Js77J7JJF	3	G$G,	JaJ	2	.g	ss	3	ggg	JJJ	7	Gg,g,,,	kJ7<JJJ
-Chromosome6	145883542	C	0	*	*	1	.	s	1	A	s	3	..a	soj	0	*	*
-Chromosome6	145912184	C	0	*	*	0	*	*	1	t	F	1	,	J	2	t,	JJ
-Chromosome6	145912948	C	2	A.	JJ	1	A	F	2	.A	JJ	0	*	*	1	T	J
-Chromosome6	145917101	C	3	..T	FJJ	2	.T	JJ	4	....	J7JJ	2	T.	FJ	2	T.	JJ
-Chromosome6	146016056	A	2	,g	JF	3	,,g	FJJ	0	*	*	0	*	*	1	,	7
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-Chromosome6	146084493	G	0	*	*	0	*	*	1	.	F	3	.AA	JJF	1	A	J
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-Chromosome6	146148158	T	0	*	*	1	c	J	0	*	*	1	,	<	2	,c	JJ
-Chromosome6	146185301	C	1	a	F	0	*	*	1	,	F	0	*	*	2	a,	JF
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-Chromosome6	146185311	A	1	*	F	0	*	*	1	,	A	0	*	*	2	*,	JJ
-Chromosome6	146185312	A	1	*	F	0	*	*	1	,	F	0	*	*	2	*,	JJ
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-Chromosome6	146190225	G	2	A.	A<	0	*	*	0	*	*	3	..A	AAJ	1	.	J
-Chromosome6	146190255	G	2	.-2TC.	eJ	0	*	*	0	*	*	3	..-2TC.-2TC	J=s	1	.-2TC	f
-Chromosome6	146235361	A	0	*	*	1	.	<	2	.G	JJ	5	.G...	JJJJJ	4	G...	FJFJ
-Chromosome6	146235549	T	0	*	*	2	A,	sJ	2	,,	FJ	5	,aa,a	JJJJ<	3	aaa	JJJ
-Chromosome6	146247233	G	1	.	J	0	*	*	1	A	J	0	*	*	2	.A	JJ
-Chromosome6	146425890	G	1	.-4TCGA	7	0	*	*	1	.-4TCGA	7	2	.-4TCGA.-4TCGA	JM	0	*	*
-Chromosome6	146442044	A	1	,	F	1	,-1t	<	1	,-1t	B	0	*	*	0	*	*
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-Chromosome6	146825897	G	0	*	*	0	*	*	1	.	s	2	.t	sJ	1	T	s
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-Chromosome6	146866556	T	0	*	*	0	*	*	1	,	J	1	G	s	2	G.	sJ
-Chromosome6	146944658	G	2	A.	7J	0	*	*	1	.	J	1	A	J	0	*	*
-Chromosome6	147003198	C	1	t	J	3	t,,	JJJ	3	,,t	JJJ	1	,	J	2	a,	JJ
-Chromosome6	147038868	A	0	*	*	1	g	J	1	,	J	0	*	*	2	g,	JJ
-Chromosome6	147038896	A	0	*	*	1	t	J	1	,	J	0	*	*	2	t,	JJ
-Chromosome6	147360171	T	0	*	*	1	A	J	3	A..	JJJ	0	*	*	5	.....	JJJJJ
-Chromosome6	147515182	C	1	.	J	0	*	*	0	*	*	3	..+3GAT.	sJs	1	.-3GAT	J
-Chromosome6	147515275	T	1	.	J	0	*	*	0	*	*	3	.G,	oo:	1	G	J
-Chromosome6	147666885	C	5	,a,,a	JAJJJ	2	,a	JJ	6	,,,a,a	7AJJJJ	3	,,,	JJJ	4	,,a,	FJFJ
-Chromosome6	147666914	G	4	,,,t	FJJJ	0	*	*	6	,,,t,,	JJJJFJ	3	,,,	JJJ	4	,,t,	FJJJ
-Chromosome6	147666915	A	4	,,gt	JJJJ	0	*	*	5	gg,g,	JJJJJ	3	,,,	JJJ	4	,,g,	FJJJ
-Chromosome6	147666917	C	4	,a,,	JJJJ	0	*	*	5	a,,,,	JJJJJ	3	,,,	JJJ	4	,,,a	FJJJ
-Chromosome6	147696786	A	2	.G	AF	3	GG.	7J<	1	G	F	2	.G	J<	2	G.	JA
-Chromosome6	147752900	G	2	,-11tagtccaattt,	7J	0	*	*	0	*	*	1	,	F	3	A,,	sJJ
-Chromosome6	147752922	C	2	g,	JJ	0	*	*	0	*	*	1	,	J	3	,,t	FJJ
-Chromosome6	147753829	T	1	,	F	0	*	*	2	c,	Js	1	c	J	1	g	J
-Chromosome6	147780213	G	0	*	*	2	.a	nJ	0	*	*	1	A	s	1	,	J
-Chromosome6	147780224	G	0	*	*	2	,-1a,-1a	JJ	0	*	*	1	.-1A	s	1	,	J
-Chromosome6	147888570	C	1	T	J	1	.	J	0	*	*	0	*	*	2	T.	JJ
-Chromosome6	147888576	A	1	G	J	1	.	J	0	*	*	0	*	*	2	G.	J<
-Chromosome6	147888768	G	1	a	7	1	,	J	0	*	*	0	*	*	2	a,	8F
-Chromosome6	147888873	A	1	,	F	1	g	J	0	*	*	0	*	*	2	,g	JJ
-Chromosome6	147961854	C	3	,,t	JJJ	1	,	s	0	*	*	1	g	s	0	*	*
-Chromosome6	147961881	G	3	,aa	JJJ	1	,	s	0	*	*	1	a	s	0	*	*
-Chromosome6	147997554	G	1	,	J	1	a	J	0	*	*	2	a,	JJ	0	*	*
-Chromosome6	147997619	T	1	c	<	1	,	J	0	*	*	2	c,	JJ	0	*	*
-Chromosome6	147997623	C	1	,	F	1	t	J	0	*	*	2	,t	FJ	0	*	*
-Chromosome6	148158071	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
-Chromosome6	148158101	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
-Chromosome6	148158167	C	0	*	*	1	.	k	4	..tt	ssJJ	0	*	*	2	.a	jJ
-Chromosome6	148158183	G	0	*	*	1	A	H	4	..aa	ssJJ	0	*	*	2	.,	oF
-Chromosome6	148158199	G	0	*	*	1	t	J	4	,,,,	JFJJ	0	*	*	2	c,	JA
-Chromosome6	148158200	C	0	*	*	1	,	J	4	t,,t	JJFJ	0	*	*	2	,t	AJ
-Chromosome6	148158203	A	0	*	*	1	,	J	4	g,,g	JJJJ	0	*	*	2	t,	<7
-Chromosome6	148158230	C	0	*	*	1	,	J	4	aa,a	JJJF	0	*	*	1	a	F
-Chromosome6	148158269	T	0	*	*	1	,	J	4	a,,a	JJFJ	0	*	*	1	a	F
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-Chromosome6	157277018	T	0	*	*	2	a,	JJ	0	*	*	2	,a	JJ	1	.	s
-Chromosome6	157277047	A	0	*	*	2	,-2tg,	JJ	0	*	*	2	,,-2tg	JJ	1	.	V
-Chromosome6	157277086	A	0	*	*	2	,c	JJ	0	*	*	2	g,	JF	1	,	J
-Chromosome6	157344689	A	0	*	*	1	,-1t	B	0	*	*	1	,	J	1	,-1t	B
-Chromosome6	157407785	T	1	.	J	0	*	*	0	*	*	2	G.	JJ	1	G	J
-Chromosome6	157407786	G	1	.	J	0	*	*	0	*	*	2	A.	JJ	1	A	F
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-Chromosome6	157407852	C	1	.	J	0	*	*	0	*	*	2	G.	ss	1	G	o
-Chromosome6	157407855	C	1	.	J	0	*	*	0	*	*	2	A.	so	1	A	s
-Chromosome6	157407885	A	1	.	J	0	*	*	0	*	*	2	G.	sk	1	G	o
-Chromosome6	157478293	A	0	*	*	0	*	*	1	.	J	1	G	J	2	T.	JJ
-Chromosome6	157478303	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	JJ
-Chromosome6	157478323	G	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	JJ
-Chromosome6	157478338	G	0	*	*	0	*	*	1	C	J	1	.	J	2	.C	JJ
-Chromosome6	157478380	T	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	JJ
-Chromosome6	157478395	C	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	AJ
-Chromosome6	157478419	C	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	FJ
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-Chromosome6	157496964	C	2	..	JJ	0	*	*	1	T	F	2	.T	As	0	*	*
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-Chromosome6	157596117	C	3	.TT	JJJ	0	*	*	2	.T	JJ	2	..	JJ	0	*	*
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-Chromosome6	162632130	T	71	.............A.....................C..................................,	ssossssssssoojsesV\osssfssssssssjJs`sssssssfsss\sso\ssassossoosassksosF	167	.................................................A..................................................................A..................................................	sjssssskoo`sosssssRssjsssssssksfsssssosssssjoosesjsasossssssssjessjsoasosssssssssssoAsMsssssfsossssWssoossssssssssosssssssss\sssssssss\sjossssssosssssssos`ossossssosss	286	..............................................A................................................................................A....................................................A.......................A......C..................................................................,,,,,,,,	sosoossssaossfs9oss`fsskssssksossjsssjofk`sssssssssssssasskasssso\ssssesssss`ssooRsssVooa`HVosssVj`ssf\sjossjjosssssfoosojs\soosssfjsssssssjoosssojoCssssssssjssosssssosssskoWkoooss`aoojoos`sssfsssossossosoosssssssssossVVsfosssosssssVssosssjCssssssWss`sssossssssCssssjssooossssssJJ7JJJFJ	226	...........................................................................................................................................................................................A.....A..............................,,	sajossse\oossossssosossssssooskjosssossssWsssssssWsssoossssesssssassssjssssssssssssssVsRoossosssoososseskosssosojssssVssVossksjssssssssss`ssjssssssoosjssfsRsssssssssssossRojsjsWsjsosssosWssosjssssssssssssssessssssssssossssosJ>	249	.......................................................................................A..........................A...........................................................................................................................A........,,	osoossjjsoosssssssssssssssskMssssjsessssjsssossjossssosossssssss`sssosssssssoossesssssesssssssssssssssssssssssssssssosssooksssksssssVoMssososssossossoCassosssosssosssosossesssjossssjssosoasssooVsMksssVssooskssssjossksosssfssssssssssssessoossMjsjosJ<
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-Chromosome6	162632154	C	71	.....A................................................................,	ssqsskssssssssoeoe\5se`ssssssssssJosossssssssss\os``ss\ssjssssssosasssF	167	.......................................................................................................................................................................	bosssoessM\jsosssj\ssjs`sssssssVssjso\ssosesRssoess\ossksosssjdssssssassssjsosssjmsssoHsssssMsfssssfsssssosssssssssssossssssRssoeoesjsRs5sVsssssssssssssWsoosssssssssso	286	......................................................A.............................................................................................................................................................................................................................,,,,,,,,,,	ojsssssssosossj\kksaRskessossoosssssomojs\ssssossssosskssjeojssssossssjssossess`sIssssjssoefksssojRssVosi`ssajssss`s\ossfossssesssR`sssssssjsksosjMoHssssosVsoossssodsokjsjomn`sseososR`josessssssjsssjso\soossssssmsss`sa`sVesss`o``esasejsssosssssssjeRsosssaeVsssssossssossVsssssJA7JJJJ7JA	226	A.....................................................................................................................................................................T........................................................,,,	WsosssjsoRosjsssssjssssssjooosooosoosjssIsssssosWsssssosss`sksssAssssssssjsssssssosssIj`osssjsoe\jsossas``joossjaosoe\ksj`ssfsosMssssssoResasssssjosssesoesRsssossssosksVsjo9ssssjsjssssoRsssjoosssssssRssossssssssjsssssssssssJJA	249	............................................................A...G.....................................................................................................................................................................................,,,	hossso`sooosssssssssssssosssjosssssosssssssssssojs^osoossosjksosksssossoosssjkssMoosss9`sssssss`ssoossssssssssssssooossjsaksssejsjssVjRssosssssjosesss`sos`jssoessssjsojsssjsjsssssssjsseso\osssoesCosssossoosossossoRoDooseoRseossjoossssossjossossssJAA
-Chromosome6	162632155	C	71	......................................................................,	sspsskssssssssssseCasoRossssssssoFssssssosssssskssoRssossjssosoossjsssJ	167	.$........................................................................................................................T..T.............T.................T..........	ajsssojosf?`sssssk\ssasojsssssojsssssVssosesNsseoss\`ssjsssoskdssssssjjkssssssesjmssssWossssMssssssessssssssssssjsosssosssssRsssjsjsssooVsCssssssssVssssWoeosssssssssos	286	.....................................T......................................................................................................T......................................................................A..............................................G..................,,,,,,,,,	sosssssssesssssejksV`skossosossssVsssmsosRsssskssssVsskosNks`sssssssssRssoosjssejRsssoossesksssssffjoV`skssmossssjsMossessWssosss`jsssssssfsfsosHRs\sossssoso`ssssodsekjssom`ossReofsooksosoassjsssssssssoskessssssdsssjsj`soosjsosejosassjsssjMssssssosjHjs`ossoVssIssosojssfsjsssssJJAJAJJ<J	225	............................................................A............................................................................T.....................................................................................,,	hoksssfseesssssssosoosssjosfossesssssossRssoosse\sssssosssas]sssjssssssssosssjsssssssRojssssssseajsjssfsajsossss\sssoVkskVsoRsssRsssssooe`sjjsssskssssssoooksoesjo`ssskojsfffsossosossssoasssoeosss`sssjosVsessssssossssssssossJF	249	.............................................................................T.........................................................................................................................................................................,,	`oosooV`ssssssossssssossjssoosssosssssssssssssssjs]sssjssosjkoosgsssosssssssskseRsssssCossssssoossssssssosssssssssseessssoksosoessssVoassssssssossosoofjsoosojsosjssjosssssososossssskss`soRosssj>jCssssossojsessosjsosaessosRssoesVsjosfssssjsssRssjssJA
-Chromosome6	162632162	G	71	.$.$.$.$.$.$.$.$..,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	EEnj\nnnssJFJJJJAJJJJJJJJJJJJJJJJJ77JJJJJJJJJJJJJJJJJ<JJJ<JJJFJJFJ<JJFJ	165	.$.$.$.$.$.$..$.$.$.$.$.$.$.$.$.$.$.$.$.....................,...,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	Ennnn=onnnnnjQnefMnnsssoosVssooMossossssoJsosJJJJFJFJFFJJJJJJJJ<JJAJJ<JJJ<7JJJJJFAAJJJJJJJJJJFFJJJJJJFJJFJJJJJJFJJJJJJJJFJJJJAJFJJJFFJ7JJFFAFAFFJFJJJJJJJJJJFJJJJFJF<	279	.$.$.$.$.$.$.$.$.$.$.$.$.$.$..$.$.$.$.$.$.$.$.$.$.$.$............,,..,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	eEnnjnnnnnnVnn\nnVnn\nennjjeskss``oessjJJssJJJJ<JJJJ<JJJJJJFJFJJJJJJJJJFJJJJJFJJJJJJJAJJJJJJJJJJJJJFJJJFJ7JJJJJJFJJJJJ<JJJJJJJJFJ<JAFJ<<FJJFAFJJ<<<JFJJJJJFJJJJJJ<JJJJFJFJJFJJFJJJJJFJJAJFJJJJAAJAFJJJJFJJJJJJJJJJJJJJAFAAAJJJJJFJJ<FJFJJJJJJJJJJJJJJJJJFJJJJJFJJJ7JJFJJFFJJJJJ<JFAJJJ7	221	.$..$..$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$............,......,.,..,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	Es<snnjnnnHnnn`njnnnn[nnnnnsseosssssossJssjsssJeJjsJJAJJ<JJJAJJAJFJJJJJJJJJJFJJJJJJFJJJJJJJFJJJJJFJJJJJJJJFJJAJJJJJJFFJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJFAJJAJJFJ<JJJJJFJJJJJJAJJFJFJJJJJJFJJJJJJJAJJJJJFJJJJJJJFJJJJFJFAFJJJJJ	246	.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$........,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,	EEnnnnjjWnn[nennensoW`sofjJFJJJJFJJJFJJJFJJJJJJJ<JFJJJJJFJJJJFJJJJJJFFFJJFJFFFJAJJJJJJFJJJJJJJJJJJJJJAJJJJJJJJJJJJFJAJJJJJFJJJJ7JJJJJJJJJJJJJJJFJJJJJAAJJ<JJJJJJJJJJJJJJJJJJJJAJJFJJJFJJFJJJJJJJJJJJJJJJJFJJJJJJFJAFFFJJFFJJJJJFJAJJJJJFFFJFJJJJFJJJJJ
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-Chromosome6	195513062	G	0	*	*	1	A	A	1	.	J	2	A.	JJ	0	*	*
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-Chromosome6	195763168	C	2	.T	JJ	0	*	*	1	T	J	0	*	*	1	.	A
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-Chromosome6	216584528	A	3	..C	AJJ	2	CC	FF	6	C.C.C.	JJJJJJ	6	...C.C	JJJFJJ	6	..CC..	<JJJJJ
-Chromosome6	216584530	C	3	..T	7JJ	2	TT	JF	6	T.TTT.	JJJJJJ	6	...T..	JAJJJJ	6	..TT..	FJJJJF
-Chromosome6	216584660	T	1	,	J	0	*	*	4	.$G,,	AsFJ	3	,G,	JsJ	0	*	*
-Chromosome6	216584774	T	3	,g,	JJA	2	gg	JA	5	,,,gg	JJJJJ	5	,,g,,	JJJJJ	6	,,gg,,	JJJJJJ
-Chromosome6	216584811	G	3	,aa	AFF	2	ta	FA	4	a,aa	FFFF	4	,a,a	FFFF	6	,,aa,,	F<FFFF
-Chromosome6	216777691	T	3	...	JJJ	0	*	*	4	.C..	JJJJ	1	C	J	0	*	*
-Chromosome6	216777833	G	3	,aa	<JJ	0	*	*	4	,,,a	JJJF	1	a	J	0	*	*
-Chromosome6	216797333	T	1	.	e	0	*	*	0	*	*	1	G	J	2	.G	FJ
-Chromosome6	216808460	C	4	,,..	skos	6	.,,,t,	ssssss	22	.,,,t,,,,,,,,,,,,,,...	sssssoossssosssoossssj	17	.,,,,,,,,,,,t,..,	Vssssssssssosssso	22	,,,,,,,,,,t,,,,,,,,,,.	ssosos`ksssssessssoesV
-Chromosome6	216937547	T	0	*	*	1	,-1g	A	0	*	*	1	.-1G	e	2	.-1G,-1g	BC
-Chromosome6	216952940	A	0	*	*	1	T	J	1	.	J	2	T.	JJ	0	*	*
-Chromosome6	217083659	T	0	*	*	1	.	J	2	C.	J<	0	*	*	1	C	J
-Chromosome6	217083825	T	0	*	*	1	,	J	2	g,	JF	0	*	*	1	g	J
-Chromosome6	217157631	A	2	T.	J<	0	*	*	1	.	o	2	t.	sJ	0	*	*
-Chromosome6	217171984	G	2	A,	<J	2	AA	<J	0	*	*	0	*	*	1	,	J
-Chromosome6	217172045	C	2	,t	JJ	0	*	*	0	*	*	1	,	s	1	t	J
-Chromosome6	217264846	C	4	,,,t	FJJJ	4	,,,t	JAF7	2	,,	JJ	5	.tt,t	sJJJJ	7	.,,t,t,	rJJJJFJ
-Chromosome6	217264888	G	4	aaaa	JJJJ	4	aaa,	JJJJ	2	,,	JJ	5	,,a,,	JJJJJ	7	a,a,,a,	JJJJJAJ
-Chromosome6	217266587	T	9	...C.....	JFJJ7JJ<J	4	..C.	JFFJ	4	....	JJJJ	0	*	*	10	.......C..	JJJFFJJFJ<
-Chromosome6	217316014	T	1	A	J	0	*	*	2	A.	J<	1	.	s	0	*	*
-Chromosome6	217316307	G	1	a	J	0	*	*	2	a,	JF	0	*	*	1	,	J
-Chromosome6	217322492	A	1	g	J	4	ggg,	JJJ7	4	,,gg	FJJJ	4	g,,,	JJJJ	5	,,,,,	<AJJJ
-Chromosome6	217363166	A	3	.+2CT.+2CT.+2CT	JJJ	0	*	*	0	*	*	1	G	J	1	.	J
-Chromosome6	217421825	G	0	*	*	3	...	J<J	0	*	*	7	.A.....	JJJAJJJ	5	....A	FJJFJ
-Chromosome6	217421895	C	0	*	*	3	T..	J7A	0	*	*	6	..T..T	JaJFAJ	4	T...	JFsJ
-Chromosome6	217516874	T	0	*	*	1	C	o	1	.	o	0	*	*	3	..C	sss
-Chromosome6	217516934	A	0	*	*	1	c	J	1	,	J	0	*	*	3	,,c	JJJ
-Chromosome6	217588082	C	2	A.	JF	1	.	J	0	*	*	0	*	*	2	A.	JJ
-Chromosome6	217588125	A	2	G.	Js	1	.	J	0	*	*	0	*	*	2	.G	JJ
-Chromosome6	217620479	A	0	*	*	2	G.	JJ	3	.G.	JFJ	2	G.	J7	2	G.	JJ
-Chromosome6	217654770	T	0	*	*	1	.	J	2	.C	JJ	0	*	*	1	C	J
-Chromosome6	217654772	G	0	*	*	1	.	F	2	.A	JJ	0	*	*	1	A	J
-Chromosome6	217654808	G	0	*	*	1	.	J	2	.C	Js	0	*	*	1	C	J
-Chromosome6	217654823	G	0	*	*	1	.	F	2	.T	Js	0	*	*	1	T	J
-Chromosome6	217654980	C	0	*	*	2	T,	sJ	1	,	J	0	*	*	1	t	J
-Chromosome6	217655016	T	0	*	*	2	a,	JJ	1	,	J	0	*	*	1	a	J
-Chromosome6	217655046	A	0	*	*	2	c,	JJ	1	,	J	0	*	*	1	c	J
-Chromosome6	217669291	C	0	*	*	1	.	o	2	T.	ss	0	*	*	2	TT	os
-Chromosome6	217669739	C	2	A.	ea	1	A	o	0	*	*	2	A.	js	6	AA.A..	saojss
-Chromosome6	217682608	T	3	..*	JJ5	1	.	J	0	*	*	0	*	*	2	G.	JF
-Chromosome6	217682962	T	3	,,a	J7J	1	,	J	0	*	*	0	*	*	2	,a	JJ
-Chromosome6	217819686	C	2	..	AJ	0	*	*	3	.A.	JFJ	0	*	*	3	..+1A.	FJJ
-Chromosome6	217819978	T	2	,,	FJ	0	*	*	3	,,g	JJ7	0	*	*	3	,c,	AFJ
-Chromosome6	217825299	A	4	....	JJJJ	2	G.	JJ	1	C	J	0	*	*	2	GG	JJ
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-Chromosome6	217983716	T	0	*	*	2	,.-1A	Js	0	*	*	1	,	s	1	,-1a	F
-Chromosome6	218225070	A	12	....GG....G,	ooJJJJJJFFJJ	7	..,G..G	FJJJAJJ	10	....GG...,	JJJJJJJJJJ	15	.GGGGGG.......,	sJJJJJJJ7F7JJFJ	6	..G...	FJJAJJ
-Chromosome6	218246251	T	2	..	JJ	0	*	*	4	...C	\JJJ	0	*	*	3	..C	JJJ
-Chromosome6	218338262	G	1	.-1T	s	0	*	*	1	.	e	1	.-1T	s	0	*	*
-Chromosome6	218382408	A	1	T	J	2	..	JJ	2	.T	JF	0	*	*	0	*	*
-Chromosome6	218382409	A	1	.	J	2	.G	JJ	2	.G	AJ	0	*	*	0	*	*
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-Chromosome6	218382423	A	1	T	J	2	.G	JJ	2	.G	FF	0	*	*	0	*	*
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-Chromosome6	218382447	C	1	G	J	2	.A	FJ	1	.	J	0	*	*	0	*	*
-Chromosome6	218382451	C	1	G	J	2	.A	JJ	1	A	J	0	*	*	0	*	*
-Chromosome6	218382485	C	1	T	J	2	T.	JJ	1	.	J	0	*	*	0	*	*
-Chromosome6	218382487	A	1	T	J	2	.G	JJ	1	.	J	0	*	*	0	*	*
-Chromosome6	218382589	A	1	g	J	2	,g	JJ	2	,g	JA	1	.	s	0	*	*
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-Chromosome6	218511955	G	0	*	*	0	*	*	2	,a	oJ	2	,,	JJ	1	a	J
-Chromosome6	218598295	A	0	*	*	2	G.	Jo	0	*	*	1	.	s	2	G.	Js
-Chromosome6	218712715	C	1	t	J	0	*	*	2	t,	JJ	1	.	o	0	*	*
-Chromosome6	218712720	C	1	t	J	0	*	*	2	t,	7J	1	.	s	0	*	*
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-Chromosome6	219254463	T	0	*	*	2	..	JJ	3	C..	JJJ	3	C.C	JsF	2	.C	JJ
-Chromosome6	219254636	G	0	*	*	2	,,	JJ	4	,.,c	JsAJ	2	,c	JJ	2	c,	JJ
-Chromosome6	219254639	A	0	*	*	2	,,	JJ	4	,.,t	JsJA	2	,t	JJ	2	t,	JJ
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-Chromosome6	219361060	T	0	*	*	2	.A	JJ	1	A	J	0	*	*	1	^],	<
-Chromosome6	219361142	A	0	*	*	2	..-4AGCT	sU	1	.-4AGCT	U	0	*	*	1	,-4agct	;
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-Chromosome6	219469888	A	1	G	s	1	,	A	0	*	*	3	..g	ssJ	0	*	*
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-Chromosome6	219683096	T	2	C.	`s	1	C	\	0	*	*	0	*	*	2	..	ss
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-Chromosome6	220083143	T	0	*	*	0	*	*	3	.A.	JJJ	1	.	J	4	.G..	JJFF
-Chromosome6	220185012	C	0	*	*	1	.	s	0	*	*	1	T	s	2	.T	so
-Chromosome6	220185090	G	0	*	*	1	t	J	0	*	*	1	,	J	2	t,	JJ
-Chromosome6	220239808	C	0	*	*	1	.	F	2	.T	JJ	2	.T	JJ	0	*	*
-Chromosome6	220409434	G	4	....	JJJJ	1	A	J	3	..A	JJJ	0	*	*	0	*	*
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-Chromosome6	220529566	C	1	.	A	1	A	J	2	T.	JJ	0	*	*	0	*	*
-Chromosome6	220532478	T	2	..	JA	0	*	*	1	G	F	0	*	*	2	.G	JF
-Chromosome6	220532665	G	2	,,	JJ	0	*	*	1	a	J	0	*	*	2	,a	JF
-Chromosome6	220532678	T	2	,,	AA	0	*	*	1	c	J	0	*	*	2	,c	JJ
-Chromosome6	220633314	A	2	.G	JJ	1	G	J	1	.	n	0	*	*	0	*	*
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-Chromosome6	221052338	A	0	*	*	2	,,	JJ	1	t	J	0	*	*	4	,,t,	FJJJ
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-Chromosome6	221118008	C	1	,-1a	J	1	.	s	1	.-1A	s	0	*	*	1	,-1a	J
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-Chromosome6	221388300	A	0	*	*	2	,c	JJ	0	*	*	1	C	s	1	,	J
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-Chromosome6	221461565	T	0	*	*	2	.C	sV	1	,	J	0	*	*	1	C	s
-Chromosome6	221461566	T	0	*	*	2	.C	sC	1	,	J	0	*	*	1	C	s
-Chromosome6	221461602	T	0	*	*	2	.C	jR	1	,	J	0	*	*	1	C	n
-Chromosome6	221461608	C	0	*	*	2	.T	eM	1	,	J	0	*	*	1	T$	J
-Chromosome6	221461617	C	0	*	*	2	.t	oJ	1	,	J	0	*	*	1	t	J
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-Chromosome6	221527623	C	0	*	*	0	*	*	1	.	s	4	.AA.	ssss	1	A	s
-Chromosome6	221555532	C	1	.	J	0	*	*	0	*	*	2	.T	JF	1	T	F
-Chromosome6	221578771	G	1	,	J	1	.-4TAAT	o	0	*	*	1	.-4TAAT	q	0	*	*
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-Chromosome6	221579643	T	1	.-3CAG	F	0	*	*	1	C	7	1	.	J	0	*	*
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-Chromosome6	221736314	T	0	*	*	1	C	J	2	C.	JJ	0	*	*	2	.C	JJ
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-Chromosome6	221932971	C	0	*	*	1	,-4aagt	J	1	,-4aagt	J	0	*	*	1	.	s
-Chromosome6	221984106	G	0	*	*	2	.-5TTCCT.	oF	2	..-5TTCCT	oF	1	.	s	0	*	*
-Chromosome6	221988300	C	2	g,	JF	0	*	*	1	,	J	1	G	s	0	*	*
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-Chromosome6	221994387	C	0	*	*	1	,-1t	A	3	.-1T..	sso	1	.	s	1	.-1T	s
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-Chromosome6	222047653	T	1	C	J	0	*	*	0	*	*	3	...	JJF	3	..C	JJJ
-Chromosome6	222049057	T	8	..CC..CC	<<J<FFFJ	2	CC	JA	7	..CC..C	F7JJFFJ	6	CC.C.C	JJAJ7F	8	.CCCCCCC	FJJ7FJJJ
-Chromosome6	222201502	A	0	*	*	1	g	J	0	*	*	1	,	J	4	g,,,	JJJJ
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-Chromosome6	222399401	C	0	*	*	1	.-2TT	J	1	,-1t	J	2	.-2TT.-2TT	JJ	0	*	*
-Chromosome6	222437947	G	2	..	JF	0	*	*	3	..T	JFJ	0	*	*	1	A	J
-Chromosome6	222438082	G	2	*t	GJ	0	*	*	3	,,t	JJJ	0	*	*	1	t	J
-Chromosome6	222574262	C	2	,G	JJ	3	,GA	JFJ	2	.$G	;s	6	,A,..G	JsJJJs	0	*	*
-Chromosome6	222581483	A	1	.-8ATGCTATT	;	1	.-8ATGCTATT	;	0	*	*	1	.-8ATGCTATT	;	0	*	*
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-Chromosome6	222585537	G	0	*	*	0	*	*	1	A	k	2	,A	MR	1	.	s
-Chromosome6	222623712	G	2	C.	JJ	0	*	*	1	C	J	0	*	*	1	.	n
-Chromosome6	222637079	C	0	*	*	2	..	ss	0	*	*	1	T	s	2	.a	sJ
-Chromosome6	222706491	G	1	C	J	0	*	*	2	.C	JF	0	*	*	1	.	J
-Chromosome6	222895452	A	0	*	*	1	*	7	0	*	*	1	,	J	2	,,-4gtgc	JJ
-Chromosome6	222936358	T	0	*	*	2	C.	JF	1	.	J	2	.C	JJ	0	*	*
-Chromosome6	222943016	A	1	,-4gcgc	F	0	*	*	1	,-4gcgc	J	1	,-4gcgc	J	0	*	*
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-Chromosome6	222975791	C	0	*	*	1	,+1g	A	0	*	*	2	,+1g,+1g	?F	2	,+1g,+1g	AA
-Chromosome6	222975798	C	0	*	*	1	,	F	0	*	*	2	,-1g,	JJ	2	,-1g,	J7
-Chromosome6	222980805	T	1	,-3tac	;	0	*	*	1	,-3tac	8	3	,-3tac,-3tac,-3tac	;;;	0	*	*
-Chromosome6	222980842	G	1	,	J	0	*	*	1	c	F	3	cc,	JJJ	0	*	*
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-Chromosome6	223012336	T	0	*	*	1	,	7	1	c	J	2	.c	\>	0	*	*
-Chromosome6	223148055	A	0	*	*	1	.-1G	n	1	.-1G	q	2	.-1G.-1G	qd	0	*	*
-Chromosome6	223168931	C	2	t,	JA	0	*	*	1	,	J	0	*	*	2	t,	JJ
-Chromosome6	223172829	A	0	*	*	2	..	JJ	1	G	J	0	*	*	5	.G.GG	JFFJA
-Chromosome6	223172835	A	0	*	*	2	..	JJ	1	G	J	0	*	*	5	.G.GG	JJJJA
-Chromosome6	223173104	C	0	*	*	1	g	F	1	,	J	0	*	*	3	,g^],	JF6
-Chromosome6	223173112	G	0	*	*	1	,	J	1	a	J	0	*	*	4	aa,a	7JFJ
-Chromosome6	223173229	A	0	*	*	1	,	J	1	,-2gc	J	0	*	*	5	,-2gc,-2gc,,,	JFFJJ
-Chromosome6	223173240	G	0	*	*	1	,	J	1	a	J	0	*	*	4	aa,,	JJJF
-Chromosome6	223195519	T	0	*	*	2	..	JJ	2	G.	JJ	2	G.	JJ	1	G	F
-Chromosome6	223195600	A	0	*	*	2	..	os	2	.g	sJ	2	.g	oJ	1	g	J
-Chromosome6	223195646	G	0	*	*	2	..	os	2	.a	sJ	2	.a	sJ	1	a	J
-Chromosome6	223195667	G	0	*	*	2	,,	JJ	2	,t	JJ	2	,t	AJ	1	t	F
-Chromosome6	223239159	C	1	.	J	4	TTTT	FJAF	5	TT..T	JJJJF	0	*	*	4	T..T	J<JJ
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-Chromosome6	238026808	A	0	*	*	3	GG.	sss	0	*	*	1	.	J	1	G	o
-Chromosome6	238189368	T	0	*	*	1	G	s	2	.A	sj	1	.	o	1	A	s
-Chromosome6	238284997	T	2	.-1G.-1G	mm	0	*	*	2	.-1G.-1G	mm	1	,	s	0	*	*
-Chromosome6	238345499	T	1	.	s	1	c	J	0	*	*	3	.-15TCTGGTACATATGGC..	Geo	0	*	*
-Chromosome6	238922545	G	2	..	FF	0	*	*	2	A.	AJ	0	*	*	1	A	7
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-Chromosome6	239064868	T	2	C.	JJ	0	*	*	0	*	*	1	C	J	1	.	J
-Chromosome6	239149736	G	1	.	J	1	A	J	2	.A	JF	0	*	*	0	*	*
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-Chromosome6	239832783	C	1	,-2tt	J	0	*	*	1	,-2tt	J	0	*	*	1	,-2tt	J
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-Chromosome6	253764367	G	2	C.	JJ	0	*	*	0	*	*	2	.C	JJ	2	C.	JJ
-Chromosome6	253764409	G	2	.-2TT.	<J	0	*	*	0	*	*	2	..-2TT	J<	2	..	JJ
-Chromosome6	253764461	G	2	A.	JJ	0	*	*	0	*	*	2	.A	JJ	2	AA	sJ
-Chromosome6	253764474	C	2	A.	JJ	0	*	*	0	*	*	2	.A	FJ	2	A.	eJ
-Chromosome6	253764498	T	2	A.	5J	0	*	*	0	*	*	2	.A	A5	1	A	S
-Chromosome6	253766758	C	1	T	J	0	*	*	2	,T	fJ	0	*	*	1	.	o
-Chromosome6	253766780	T	1	A	J	0	*	*	2	,A	oJ	0	*	*	1	.	o
-Chromosome6	253766826	A	1	.-1T	6	0	*	*	2	,.-1T	s;	0	*	*	1	.	s
-Chromosome6	253766834	A	1	C	J	0	*	*	2	,C	jF	0	*	*	1	T	s
-Chromosome6	253766854	T	1	.-1C	D	0	*	*	2	,.-1C	k?	0	*	*	1	.	s
-Chromosome6	253766855	C	1	*	A	0	*	*	2	,*	j;	0	*	*	1	.	s
-Chromosome6	253783607	A	2	G.	JA	0	*	*	1	.	J	1	G	J	0	*	*
-Chromosome6	253783685	T	2	C.	JF	0	*	*	1	.	J	1	C	J	0	*	*
-Chromosome6	253783733	G	2	A.	JJ	0	*	*	1	.	J	1	A	J	0	*	*
-Chromosome6	253783820	C	2	g,	JJ	0	*	*	1	,	J	1	g	J	0	*	*
-Chromosome6	253783902	C	2	g,	JJ	0	*	*	1	,	J	1	g	J	0	*	*
-Chromosome6	253821284	A	1	.	J	2	.+1C,+1c	JJ	0	*	*	0	*	*	2	.+1C,+1c	JJ
-Chromosome6	253821307	T	1	.	s	2	.-1A,-1a	JJ	0	*	*	0	*	*	2	.-1A,-1a	JJ
-Chromosome6	253971374	A	1	G	7	0	*	*	2	C.	JJ	0	*	*	2	CC	JJ
-Chromosome6	253971685	T	1	,	J	0	*	*	2	,a	JJ	0	*	*	2	aa	JJ
-Chromosome6	254586774	C	1	T	J	1	.	J	3	.T.	JJJ	0	*	*	0	*	*
-Chromosome6	254687265	C	0	*	*	1	*	E	1	,-1t	C	1	,-1t	J	0	*	*
-Chromosome6	254719875	A	4	.GG.	JJJJ	0	*	*	2	..	JJ	0	*	*	1	G	F
-Chromosome6	254800524	G	3	..A	AJJ	1	.	F	0	*	*	0	*	*	2	.A	FJ
-Chromosome6	254819568	A	2	G.	JF	1	.	J	0	*	*	0	*	*	1	G	J
-Chromosome6	254819572	T	2	A.	JF	1	.	J	0	*	*	0	*	*	1	A	J
-Chromosome6	254819612	G	2	C.	JF	1	.	J	0	*	*	0	*	*	1	C	J
-Chromosome6	254819615	T	2	C.	FF	1	.	F	0	*	*	0	*	*	1	C	J
-Chromosome6	254819752	C	2	a,	JA	1	,	7	0	*	*	0	*	*	1	a	J
-Chromosome6	254819784	T	2	a,	JJ	1	,	J	0	*	*	0	*	*	1	a	J
-Chromosome6	255052745	C	1	A	W	2	,a	JJ	0	*	*	1	,	J	0	*	*
-Chromosome6	255052753	T	1	.	R	2	c,	JJ	0	*	*	1	c	J	0	*	*
-Chromosome6	255459484	A	0	*	*	1	,-2at	5	1	,	J	0	*	*	2	,-2at,	5J
-Chromosome6	255606254	A	6	GG....	JJJJJJ	1	G	J	3	G..	JJJ	0	*	*	0	*	*
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-Chromosome6	255606445	T	6	,,,,cc	JJFJFF	0	*	*	3	,,c	JFJ	2	.c	sJ	0	*	*
-Chromosome6	255606507	C	5	,t,tt	JJJAJ	0	*	*	3	ttt	JJJ	1	,	J	0	*	*
-Chromosome6	255606526	A	5	,t,,,	JJJJJ	0	*	*	3	t,,	JJJ	1	,	J	0	*	*
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-Chromosome6	255718273	T	0	*	*	1	,-1a	J	1	,-1a	J	1	,-1a	F	0	*	*
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-Chromosome6	255776538	G	1	.	A	2	.T	FJ	2	.A	JJ	0	*	*	0	*	*
-Chromosome6	255880795	G	3	aa,	JJJ	3	,aa	JJJ	4	,,a,	JJJs	1	,	J	7	a,,,,,a	JJJJJJJ
-Chromosome6	255886844	C	12	.+1A.+1A....+5AAAAA......	JJJJJJJaJJJJ	13	,+2aa.+3AAA...........	ssJJFJJJAJsJA	2	..	JJ	16	......+1A....+1A......	JJJA\JkAJJFJJ<JJ	9	...+1A..+1A....	JJJJJJJJJ
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-Chromosome6	255963591	G	1	A	a	0	*	*	2	a,	Fj	0	*	*	1	.	s
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-Chromosome6	256258648	C	1	T	a	0	*	*	3	.TT	sos	1	.	s	0	*	*
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-Chromosome6	256354556	A	2	G.	JF	1	G	J	0	*	*	0	*	*	1	.	J
-Chromosome6	256354657	C	2	T.	A<	1	T	J	0	*	*	0	*	*	1	.	A
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-Chromosome6	256655423	G	2	..	J<	0	*	*	3	A.A	JJJ	1	A	J	2	.A	JJ
-Chromosome6	256782909	C	2	T.	JJ	0	*	*	1	.	F	0	*	*	1	T	J
-Chromosome6	256860288	A	0	*	*	0	*	*	2	G.	JJ	1	.	o	1	G	s
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-Chromosome6	256860307	G	0	*	*	0	*	*	3	A.A	sJJ	1	.	s	1	A	s
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-Chromosome6	257154781	T	0	*	*	1	G	s	2	G.	FJ	0	*	*	2	.G	JJ
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-Chromosome6	257160026	A	0	*	*	1	g	F	2	,,	F<	0	*	*	2	,g	JJ
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-Chromosome6	257365305	C	1	.	J	1	.-5GGCAG	8	1	.-5GGCAG	8	0	*	*	0	*	*
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-Chromosome6	259874400	G	3	,,t	J<J	3	t,t	JJJ	0	*	*	0	*	*	1	t	F
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-Chromosome6	259874465	C	1	,	J	2	t,	JJ	0	*	*	0	*	*	1	t	J
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-Chromosome6	259945639	C	0	*	*	2	..	AJ	3	.TT	JJJ	4	tTT.	oJFs	5	..TT.	JJJJJ
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-Chromosome6	259956381	C	0	*	*	1	.	s	0	*	*	1	A	s	3	..+6ATATAT.+6ATATAT	oss
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-Chromosome6	260157882	C	1	,-3tat	F	0	*	*	1	,-3tat	J	0	*	*	1	,-3tat	J
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-Chromosome6	260450936	C	1	.-1T	J	0	*	*	1	.-1T	J	0	*	*	1	.-1T	J
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-Chromosome6	260605317	T	0	*	*	1	,-3ctc	:	1	,	J	1	,-3ctc	:	0	*	*
-Chromosome6	260614871	C	1	,-1a	<	0	*	*	1	,-1a	7	0	*	*	2	,-1a,-1a	JF
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-Chromosome6	261025523	A	2	,$c	>J	0	*	*	1	,$	>	0	*	*	1	c	J
-Chromosome6	261036105	A	5	,g,,g	JJJJ<	1	g	A	0	*	*	2	g,	FJ	2	,g	JJ
-Chromosome6	261045158	G	0	*	*	1	,+1c	:	2	,+2aa,+2aa	JF	0	*	*	3	,+1a,,	JJF
-Chromosome6	261056210	T	1	.	V	0	*	*	2	CC	<J	5	C.CC.	JJJJF	0	*	*
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-Chromosome6	261120331	A	0	*	*	0	*	*	2	G.	FJ	1	.	J	1	G	A
-Chromosome6	261217534	A	0	*	*	2	.-1T.-1T	AJ	1	.-1T	F	1	.-1T	o	1	.-1T	J
-Chromosome6	261237594	C	2	a,	JJ	1	.	o	1	a	J	0	*	*	0	*	*
-Chromosome6	261237671	C	2	t,	JJ	1	,	J	1	t	J	0	*	*	0	*	*
-Chromosome6	261272801	T	0	*	*	1	.-2CG	J	1	.	J	1	.-2CG	J	1	.-2CG	J
-Chromosome6	261632189	C	0	*	*	2	,,	JJ	2	,t	JJ	0	*	*	2	A$,	JJ
-Chromosome6	261684946	C	0	*	*	1	.	J	2	.T	JJ	1	A	F	0	*	*
-Chromosome6	261684992	A	0	*	*	1	.	J	2	.C	Fo	1	G	a	0	*	*
-Chromosome6	261685032	G	0	*	*	1	.	f	2	.A	JV	1	A$	N	0	*	*
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-Chromosome6	262041522	C	0	*	*	2	,,	JJ	1	,-1t	J	0	*	*	1	,-1t	J
-Chromosome6	262048266	T	1	c	J	1	.	s	2	.c	sF	0	*	*	0	*	*
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-Chromosome6	262108057	G	0	*	*	0	*	*	3	..A	sse	2	.T	sJ	1	.	s
-Chromosome6	262108088	G	0	*	*	0	*	*	3	C,,	rJJ	1	C	s	1	.	s
-Chromosome6	262108128	T	0	*	*	0	*	*	3	cc,	JJJ	1	,	J	1	c	J
-Chromosome6	262216726	G	1	.	k	1	,-8ctggagac	8	1	,-8ctggagac	8	0	*	*	0	*	*
-Chromosome6	262420149	C	1	.	J	6	AAAA..	JJJJJA	2	A^].	NA	11	A..AA..AAA.	JJFJJJJJJJA	0	*	*
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-Chromosome6	262446243	C	0	*	*	1	,-1t	J	0	*	*	1	.-1T	s	1	,-1t	J
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-Chromosome6	263305606	A	0	*	*	0	*	*	2	G.+1G	AJ	2	..	JJ	2	G.	JJ
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-Chromosome6	263329137	G	8	AA......	JJJJJFAJ	2	A.	JF	4	.A..	<J<F	2	..	JJ	9	....AA.A.	JF7JJFJJJ
-Chromosome6	263456066	A	0	*	*	1	,-1t	J	1	,-1t	<	0	*	*	1	,-1t	J
-Chromosome6	263677587	C	1	G	J	5	GGAGG	7JJJJ	0	*	*	2	AG	JJ	0	*	*
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-Chromosome6	264058093	A	3	,tt	FJ<	4	t,tt	JJJF	0	*	*	3	,tt	JJJ	3	ttt	JJJ
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-Chromosome6	264266792	T	1	a	J	2	,,	JJ	0	*	*	2	,c	AJ	5	,,,,c	JFJJJ
-Chromosome6	264523658	T	2	G.	oJ	2	.G	JJ	0	*	*	0	*	*	1	.	J
-Chromosome6	264730923	T	2	.-1A.	JJ	0	*	*	1	.-1A	J	2	..	JJ	0	*	*
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-Chromosome6	264731175	G	1	a	J	0	*	*	1	t	J	2	,t	JJ	0	*	*
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-Chromosome6	264731188	C	2	,,	JJ	0	*	*	1	t	J	2	gt	JJ	0	*	*
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-Chromosome6	264833852	A	0	*	*	1	,	J	1	,-6tccagg	5	0	*	*	1	,-6tccagg	5
-Chromosome6	264833903	C	0	*	*	1	,	J	1	,-1a	J	0	*	*	1	,-1a	J
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-Chromosome6	265097279	A	0	*	*	1	.	J	1	G	J	0	*	*	3	G..	JFJ
-Chromosome6	265097368	G	0	*	*	1	.	J	1	A	7	0	*	*	3	A..	J=5
-Chromosome6	265257185	G	3	t,,	JJJ	1	,	7	2	tt	JJ	0	*	*	0	*	*
-Chromosome6	265257215	A	3	c,,	JJJ	1	,	F	2	cc	JJ	0	*	*	0	*	*
-Chromosome6	265257223	C	3	t,,	JJJ	1	,	A	2	tt	JJ	0	*	*	0	*	*
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-Chromosome6	265482676	A	0	*	*	1	t	J	1	,	J	1	.-1T	s	0	*	*
-Chromosome6	265705349	G	1	,	J	1	C	o	2	.-4TCGA.-4TCGA	KK	0	*	*	0	*	*
-Chromosome6	265814614	T	1	c	<	2	,c	JJ	0	*	*	0	*	*	1	,	F
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-Chromosome6	265939862	C	0	*	*	1	.-4CATG	>	1	.-4CATG	J	0	*	*	2	.-4CATG.-4CATG	JJ
-Chromosome6	265939888	C	0	*	*	1	.+1T	J	2	.+1T.	JJ	0	*	*	2	.+1T.+1T	JF
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-Chromosome6	265940010	A	0	*	*	1	,	J	2	.g	sJ	0	*	*	2	gg	JJ
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-Chromosome6	266080977	C	1	.-2TT	J	0	*	*	1	.-2TT	s	0	*	*	1	.-3TTT	J
-Chromosome6	266090619	C	1	.	J	0	*	*	2	A.	FJ	1	A	J	0	*	*
-Chromosome6	266266845	C	2	GG	FF	0	*	*	3	G.G	FJJ	1	.	J	2	.G	FJ
-Chromosome6	266266853	C	2	GG	<J	0	*	*	3	G.G	JJF	1	.	J	2	.G	JJ
-Chromosome6	266267568	T	2	,+1g,+1g	J<	0	*	*	2	,+1g,+1g	JJ	1	,	J	2	,+1g,+1g	J?
-Chromosome6	266328391	T	0	*	*	0	*	*	1	.	o	2	.G	oF	2	G.	Fs
-Chromosome6	266643007	C	0	*	*	3	..A	JJ8	4	..AA	JF88	0	*	*	6	..AAAA	FJ<888
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-Chromosome6	266788622	C	2	.T	JJ	1	.	J	0	*	*	0	*	*	1	T	J
-Chromosome6	266788750	G	2	,a	JJ	1	,	J	0	*	*	0	*	*	1	a	J
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-Chromosome6	267471425	G	1	a	F	2	,,	JJ	3	aa,	JJ7	2	.a	sJ	2	a,	AJ
-Chromosome6	267524800	T	1	.-1A	J	1	.	j	0	*	*	0	*	*	1	.-1A	f
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-Chromosome6	267900380	G	1	A	s	0	*	*	0	*	*	2	,$,	>F	3	a,,	AAJ
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-Chromosome6	267907183	G	3	...	AJJ	0	*	*	4	..A.	JJ>F	3	..A	JJJ	1	A	J
-Chromosome6	267907186	C	2	..	JJ	0	*	*	4	..T.	JJ>J	3	..T	JJJ	1	T	J
-Chromosome6	267907247	A	2	C.	<J	0	*	*	3	CC.	AJF	3	C..	Jjj	1	.	J
-Chromosome6	267907250	T	3	AA.	A7A	0	*	*	2	A.	J<	3	A..	Jes	1	.	J
-Chromosome6	267907262	C	2	A.	<F	0	*	*	4	AA..	JJAA	3	AT.	Foe	1	.	7
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-Chromosome6	267911601	C	0	*	*	1	G	J	2	G,	JJ	0	*	*	2	G.	7A
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-Chromosome6	267913471	G	0	*	*	1	.	J	4	.T..	JJFJ	1	T	J	2	T.	JJ
-Chromosome6	267913507	C	0	*	*	1	.	J	4	.TTT	JJJJ	1	T	J	3	.T.	JJJ
-Chromosome6	267913557	T	0	*	*	1	.	s	4	.CCC	ss\\	1	C	s	3	.C.	\oV
-Chromosome6	267913569	A	0	*	*	1	.	o	4	.CCC	sos5	1	C	R	3	.C.	Mje
-Chromosome6	267916542	G	1	a	J	0	*	*	1	,	J	4	..,A	ssJs	0	*	*
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-Chromosome6	267916602	G	1	a	J	0	*	*	1	,	J	4	..,A	soJs	0	*	*
-Chromosome6	267916639	T	1	a	J	0	*	*	1	,	J	4	,,,A	JJJs	0	*	*
-Chromosome6	267916663	T	1	c	F	0	*	*	1	,	F	4	,,,c	FFFJ	0	*	*
-Chromosome6	267945694	G	1	.	A	0	*	*	1	A	J	2	.A	JJ	0	*	*
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-Chromosome6	268045117	A	0	*	*	0	*	*	3	..G	FJJ	1	.	J	1	T	J
-Chromosome6	268045233	C	0	*	*	0	*	*	3	.-1G.-1G.$	JJJ	1	.-1G	J	1	.$	F
-Chromosome6	268494117	T	0	*	*	0	*	*	2	.C	J<	1	.	J	4	.CC.	AJJ7
-Chromosome6	268494226	C	0	*	*	0	*	*	2	.G	JJ	2	..	Jo	4	.GGT	AJJF
-Chromosome6	268494338	T	0	*	*	0	*	*	2	,c	JJ	1	,	F	4	cccc	AJJJ
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-Chromosome6	268494438	A	0	*	*	0	*	*	2	,g	JA	1	,	J	4	,gg,	AJFJ
-Chromosome6	268632410	A	0	*	*	1	G	J	0	*	*	2	.G	JJ	1	.	J
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-Chromosome6	268632434	A	0	*	*	1	G	s	0	*	*	2	.G	ss	1	.	R
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-Chromosome6	268632476	T	0	*	*	1	C	s	0	*	*	2	.C	ss	1	.	M
-Chromosome6	268729366	A	0	*	*	2	GG	JJ	2	.G	JJ	1	.	J	0	*	*
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-Chromosome6	268729453	G	0	*	*	2	A.	Js	2	.A	JF	1	.	J	0	*	*
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-Chromosome6	280607811	C	0	*	*	2	.A	sC	0	*	*	1	A	s	1	.	s
-Chromosome6	280656384	G	1	.-1A	J	0	*	*	0	*	*	2	.-1A.	7J	1	.-1A	J
-Chromosome6	280779331	A	0	*	*	3	.,g	sJJ	3	g,,	JJJ	2	,g	JJ	3	,g,	JAJ
-Chromosome6	280779333	A	0	*	*	3	.g,	sJJ	3	,g,	JJJ	2	,,	JJ	3	g,g	JFJ
-Chromosome6	280889445	G	1	.	o	0	*	*	5	.A...	fmsss	3	A..	`oo	7	.A.....	s[sssss
-Chromosome6	280902643	A	1	.	J	0	*	*	0	*	*	2	T.	JJ	1	T	J
-Chromosome6	281173512	G	0	*	*	1	.-1A	s	1	.-1A	s	0	*	*	1	.	J
-Chromosome6	281225370	A	1	,	J	2	g,	JJ	0	*	*	0	*	*	1	g	J
-Chromosome6	281278782	T	0	*	*	1	.	s	2	C.	ss	1	C	s	0	*	*
-Chromosome6	281312444	G	0	*	*	2	A.	js	1	A	J	1	,	<	0	*	*
-Chromosome6	281353837	A	1	T	J	2	.T	JJ	0	*	*	0	*	*	1	.	J
-Chromosome6	281353953	G	1	t	A	2	t,	<J	0	*	*	0	*	*	1	,	J
-Chromosome6	281354006	T	1	c	J	2	c,	JJ	0	*	*	0	*	*	1	,	J
-Chromosome6	281354026	G	1	a	J	2	a,	JJ	0	*	*	0	*	*	1	,	J
-Chromosome6	281354063	G	1	t	J	2	t,	JJ	0	*	*	0	*	*	1	,	J
-Chromosome6	281354095	A	1	g	F	2	g,	FF	0	*	*	0	*	*	1	,	F
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-Chromosome6	281445512	C	3	.GG	FFJ	0	*	*	1	.	J	0	*	*	3	..G	JJJ
-Chromosome6	281445513	G	3	AAA	JJJ	0	*	*	1	.	J	0	*	*	3	..A	A<J
-Chromosome6	281445546	C	3	T..	JJJ	0	*	*	1	T	J	0	*	*	3	...	A<J
-Chromosome6	281445593	G	3	A..	JFJ	0	*	*	1	A	J	0	*	*	3	AA.	FJJ
-Chromosome6	281445625	T	3	.CC	JJJ	0	*	*	1	.	J	0	*	*	3	..C	J<J
-Chromosome6	281445711	C	3	tt,	JFJ	0	*	*	1	,	J	0	*	*	3	,,t	JJJ
-Chromosome6	281445713	C	3	aa,	<AF	0	*	*	1	t	J	0	*	*	3	aaa	JJJ
-Chromosome6	281687626	A	1	.	F	0	*	*	3	..G	JJJ	2	.G	JJ	0	*	*
-Chromosome6	281687698	A	1	.	o	0	*	*	3	..G	sJs	2	.G	js	0	*	*
-Chromosome6	281687717	G	1	C	s	0	*	*	3	..C	sJs	2	.C	ss	0	*	*
-Chromosome6	281687755	T	1	,	F	0	*	*	2	,,-1g	JJ	2	,,-1g	JJ	0	*	*
-Chromosome6	281687789	C	1	,-1a	I	0	*	*	2	,-1a,	JJ	1	,	J	0	*	*
-Chromosome6	281772692	A	0	*	*	0	*	*	1	.	J	1	.-3TGT	s	1	.-3TGT	<
-Chromosome6	281773064	A	1	.-1T	?	0	*	*	1	,-1t	F	0	*	*	1	,	J
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-Chromosome6	281849390	G	2	,a	JJ	0	*	*	0	*	*	1	,	J	1	a	J
-Chromosome6	282016502	A	0	*	*	0	*	*	1	g	J	2	,g	J7	3	,,,	FJF
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-Chromosome6	282250903	T	1	.	J	0	*	*	0	*	*	2	C.	JJ	1	C	J
-Chromosome6	282418228	C	2	AA	JJ	0	*	*	1	.	A	2	A.	sJ	0	*	*
-Chromosome6	282423362	T	1	.	J	0	*	*	2	.C	Fo	0	*	*	2	C.	sJ
-Chromosome6	282423450	A	1	,	F	0	*	*	2	t,	JJ	0	*	*	2	t,	FJ
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-Chromosome6	282432505	A	2	g,	7A	0	*	*	1	,	J	0	*	*	2	gg	JJ
-Chromosome6	282436482	T	1	,-4tata	;	1	.-4TATA	;	0	*	*	0	*	*	1	.	s
-Chromosome6	282440135	A	0	*	*	2	G,	JJ	0	*	*	1	,	F	1	G	o
-Chromosome6	282453013	G	1	,-4atac	I	1	,-4atac	F	1	,	J	0	*	*	0	*	*
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-Chromosome6	282482804	A	1	.	J	0	*	*	2	,G	JJ	1	G	J	0	*	*
-Chromosome6	282482835	G	2	..	JA	0	*	*	2	,A	JJ	1	A	J	0	*	*
-Chromosome6	282483144	C	3	.tt	oJ<	0	*	*	2	t.	JJ	1	,	J	0	*	*
-Chromosome6	282484404	T	1	G	s	0	*	*	2	.G	JF	0	*	*	1	.	F
-Chromosome6	282753410	T	0	*	*	2	C.	ss	5	C..C.	sVsss	7	.....C.	osssjsJ	2	CC	ss
-Chromosome6	282869555	C	2	.A	JF	0	*	*	0	*	*	1	.	J	1	A	J
-Chromosome6	283286623	C	1	.	o	2	T.	sj	0	*	*	2	T.	ss	0	*	*
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-Chromosome6	283495578	A	1	g	F	0	*	*	4	gg,,	JJJJ	0	*	*	1	,	J
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-Chromosome6	283533645	C	0	*	*	0	*	*	2	,a	JJ	1	a	J	2	a,	JF
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-Chromosome6	283647733	C	1	.	F	0	*	*	2	GG	<J	0	*	*	2	T.	JJ
-Chromosome6	283647788	A	1	,+1g	H	0	*	*	2	.+1G,+1g	oH	0	*	*	2	.+1G.+1G	om
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-Chromosome6	283949406	T	4	.-1C.-1C.-1C.-1C	AFFA	5	.-1C.-1C.-1C.-1C.-1C	FFFFJ	13	.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C	FJFHFEJFFFFJF	7	.-1C.-1C.-1C.-1C.-1C.-1C.-1C	F<FFFFF	16	.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C	FFF5FEEJAFFFFHFA
-Chromosome6	283949410	T	1	C	8	1	.	J	4	CA.C	<<J7	2	C.	8J	5	A.CAC	<J8<8
-Chromosome6	284177401	C	2	.T	FF	0	*	*	1	.	F	0	*	*	1	T	J
-Chromosome6	284558119	C	0	*	*	1	.-1G	J	0	*	*	1	.-1G	s	1	.	J
-Chromosome6	284579997	T	2	.C	o7	0	*	*	2	.C	J7	1	.	J	0	*	*
-Chromosome6	284593133	T	1	G	J	1	.	7	0	*	*	0	*	*	2	.G	JJ
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-Chromosome6	284644091	C	0	*	*	0	*	*	2	.G	JJ	1	G	J	3	...	JJJ
-Chromosome6	284644114	G	0	*	*	0	*	*	2	.A	JJ	1	A	J	2	..	JJ
-Chromosome6	284644182	T	0	*	*	0	*	*	2	c,	J7	1	.	s	3	a,,	FJF
-Chromosome6	284644210	T	0	*	*	0	*	*	2	c,	JJ	1	.	s	3	*,,	DJJ
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-Chromosome6	284647536	C	0	*	*	1	.	s	0	*	*	2	.-1T.-1T	sJ	1	.-1T	J
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-Chromosome6	284924304	C	1	t	J	2	,g	JJ	0	*	*	1	,	J	0	*	*
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-Chromosome6	284952558	A	0	*	*	0	*	*	2	..	JJ	2	.G	Fo	1	G	J
-Chromosome6	284952654	C	0	*	*	0	*	*	2	,,	AJ	2	g,	JJ	1	g	J
-Chromosome6	284952661	G	0	*	*	0	*	*	2	,,	7J	2	,-1a,	JJ	1	,-1a	J
-Chromosome6	284952687	C	0	*	*	0	*	*	2	,,	<F	2	t,	?F	1	t	J
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-Chromosome6	285168706	T	3	,g,	JJJ	1	,	F	3	,,g	FJJ	0	*	*	0	*	*
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-Chromosome6	285168760	T	3	c,c	JFF	1	c	F	3	cc,	JJJ	0	*	*	0	*	*
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-Chromosome6	285301352	C	1	.	J	0	*	*	0	*	*	1	T	o	2	T.	FJ
-Chromosome6	285367187	C	0	*	*	1	G	s	1	.	s	3	GG.	`js	0	*	*
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-Chromosome6	285368414	A	2	C.	JJ	0	*	*	0	*	*	1	.	J	1	C	J
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-Chromosome6	285562871	T	1	.-1C	J	0	*	*	1	.	J	1	A	J	0	*	*
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-Chromosome6	285563037	C	1	,	J	0	*	*	2	a,	Js	2	t.	Jk	0	*	*
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-Chromosome6	285573857	T	0	*	*	1	.-1A	J	0	*	*	3	.,c	JJJ	1	.	J
-Chromosome6	285573930	G	0	*	*	1	C	o	0	*	*	3	.a,	sJJ	1	.	s
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-Chromosome6	285866312	C	0	*	*	3	.T.	JJJ	2	..	FJ	0	*	*	1	T	J
-Chromosome6	285866322	C	0	*	*	3	..T	JJJ	2	T.	JJ	0	*	*	1	.	J
-Chromosome6	285866324	G	0	*	*	3	A..	<JJ	2	T.	JJ	0	*	*	1	.	J
-Chromosome6	285866444	C	0	*	*	3	,t,	JJJ	2	a,	JJ	0	*	*	1	T	s
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-Chromosome6	285910473	C	0	*	*	0	*	*	4	...-3GCT.	js[s	2	TT	ss	1	.	s
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-Chromosome6	285982928	C	1	.	J	0	*	*	1	T	J	2	.T	Js	0	*	*
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-Chromosome6	286013108	C	1	.	F	0	*	*	3	.TT	FFF	0	*	*	1	T	F
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-Chromosome6	286013223	A	1	.	J	0	*	*	3	.GG	JJJ	0	*	*	1	G	J
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-Chromosome6	286260082	T	2	.C	JJ	0	*	*	1	C	s	0	*	*	1	.	J
-Chromosome6	286267774	T	3	g,,	AJJ	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome6	286267843	C	3	,,g	FJJ	0	*	*	1	g	J	0	*	*	1	,	J
-Chromosome6	286267853	A	3	g,,	FJ<	0	*	*	1	,	J	0	*	*	1	g	J
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-Chromosome6	286267859	G	3	,,t	FJ7	0	*	*	1	t	J	0	*	*	1	,	J
-Chromosome6	286267861	C	3	t,,	JJ<	0	*	*	1	,	J	0	*	*	1	t	J
-Chromosome6	286651341	C	0	*	*	1	.	J	3	.TT	JJJ	0	*	*	5	....T	7JFJJ
-Chromosome6	286651816	A	0	*	*	1	,	J	3	g,,	JFJ	0	*	*	7	,,g,,,,	JJJFJJ7
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-Chromosome6	286835703	C	1	G	J	1	.	J	3	A..	JsF	0	*	*	0	*	*
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-Chromosome6	287305538	T	3	CC.	JJJ	11	CCCC.CCCC.G	JJJJsJJFJJJ	15	CC...CCA.CCC.CC	JFJFJ<JJJJJJJJJ	7	CCCCCCC	FJJJJJJ	10	CCCCC..CCC	FJAJJJJJJJ
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-Chromosome6	287381189	T	3	.A.	JJJ	0	*	*	2	A.	JJ	0	*	*	2	..	JJ
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-Chromosome6	287760872	A	1	,	J	0	*	*	2	,g	JJ	2	,g	JJ	1	g	A
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-Chromosome6	288615340	C	2	,,	JJ	3	.a,	oFJ	0	*	*	0	*	*	2	t,	JF
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-Chromosome6	290903555	C	2	.-25TGCCTCCGTCTAGAAATAAATATCT.	5J	0	*	*	0	*	*	1	.-25TGCCTCCGTCTAGAAATAAATATCT	5	1	.	J
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-Chromosome6	291186149	T	0	*	*	2	.-1G.	6o	1	.-1G	6	1	.-1G	6	2	.-1G.-1G	65
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-Chromosome6	292446338	C	0	*	*	1	,	J	2	t,	J7	0	*	*	1	t	J
-Chromosome6	292446341	A	0	*	*	1	g	J	2	,g	JJ	0	*	*	1	,	J
-Chromosome6	292446353	A	0	*	*	1	,	J	2	g,	JA	0	*	*	1	g	J
-Chromosome6	292671611	C	0	*	*	1	.	s	0	*	*	2	,t	f`	1	T	s
-Chromosome6	292674011	C	1	.	J	0	*	*	0	*	*	2	T.	JJ	2	T.	AA
-Chromosome6	292674145	G	1	a	F	0	*	*	0	*	*	2	a,	JJ	3	.,a	sJ7
-Chromosome6	292676535	T	3	...	JFA	1	A	J	2	.A	FJ	4	.A..	7AFJ	6	A..A..	<FJJAF
-Chromosome6	292824936	C	0	*	*	1	.	J	1	G	J	0	*	*	2	.G	JJ
-Chromosome6	292825022	G	0	*	*	1	.	f	1	A	s	0	*	*	2	.A	o`
-Chromosome6	292922016	C	1	.-2TG	k	0	*	*	0	*	*	1	.-2TG	o	1	.-2TG	s
-Chromosome6	292922057	C	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J
-Chromosome6	293017947	A	0	*	*	1	.-1C	o	2	,-1c,	HJ	0	*	*	1	,-1c	A
-Chromosome6	293018010	A	0	*	*	1	.	s	2	g,	JJ	0	*	*	1	g	J
-Chromosome6	293058556	A	9	.,,,,,,gg	sJJFAJJAJ	8	.,,,,,,,	oJFJJJJF	11	,gg,ggg,,,,	J<JAJJFFF7F	11	..g,gg,g,,,	ssJJJFJJJ7J	14	g.,,,,g,,,,,,,	JsJJJJJJJJFJJJ
-Chromosome6	293067520	A	0	*	*	2	.T	JJ	0	*	*	1	T	J	1	C	F
-Chromosome6	293067525	G	0	*	*	2	.A	JJ	0	*	*	1	A	J	1	.	<
-Chromosome6	293067526	C	0	*	*	2	.T	JJ	0	*	*	1	T	J	1	.	<
-Chromosome6	293067534	T	0	*	*	2	.A	JJ	0	*	*	1	A	J	1	.	7
-Chromosome6	293068158	A	1	c	J	0	*	*	2	..	Js	0	*	*	2	.C	JJ
-Chromosome6	293287583	A	1	,-1t	J	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J
-Chromosome6	293288349	C	2	T.	7J	0	*	*	0	*	*	1	t	s	1	.	J
-Chromosome6	293289280	T	0	*	*	2	,c	JF	1	,	<	1	c	F	0	*	*
-Chromosome6	293293304	A	1	,-3tag	H	1	.-3TAG	K	0	*	*	0	*	*	1	,-3tag	6
-Chromosome6	293383038	T	1	C	>	0	*	*	1	.	F	0	*	*	3	..C	JJ?
-Chromosome6	293383041	A	1	T	>	0	*	*	1	C	J	0	*	*	3	CCT	JJ?
-Chromosome6	293383048	C	1	T	J	0	*	*	1	.	J	0	*	*	3	..T	JJF
-Chromosome6	293383053	T	1	C	J	0	*	*	1	.	F	0	*	*	3	..C	JJA
-Chromosome6	293452930	A	0	*	*	1	.-1C	s	1	.-1C	J	1	.	s	0	*	*
-Chromosome6	293640285	T	2	A.	7F	0	*	*	1	.	J	2	A.	JJ	1	A	J
-Chromosome6	293876227	G	1	.	F	0	*	*	0	*	*	2	A.	JJ	3	CC.	JJJ
-Chromosome6	293876255	C	1	A	J	0	*	*	0	*	*	2	G.	JJ	3	...	JJJ
-Chromosome6	293876256	A	1	G	J	0	*	*	0	*	*	2	C.	JJ	3	...	JJJ
-Chromosome6	293876308	G	1	.	F	0	*	*	0	*	*	2	..-3CGA	s]	3	...-3CGA	JJ]
-Chromosome6	293876339	C	1	.	F	0	*	*	0	*	*	2	.A	ss	3	..A	JJs
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-Chromosome6	293899946	A	2	,g	JJ	0	*	*	3	g,g	JJJ	0	*	*	1	.	s
-Chromosome6	293900038	G	1	,	J	0	*	*	3	,a,	JJJ	0	*	*	1	A	i
-Chromosome6	293903088	G	3	...	JJJ	2	A.	JJ	2	.A	JJ	2	.A	JJ	7	A...A..	A7JJJJJ
-Chromosome6	293903117	C	4	G.A.	JJJA	3	.T.	JAf	2	..	J:	2	A.	JJ	7	.....TT	JFJJJJF
-Chromosome6	293903145	T	4	C.CC	JJJJ	4	CC.C	JJRJ	2	.C	FJ	2	CC	JJ	7	CCC.CCC	JJJJJJJ
-Chromosome6	293903189	C	4	.A..	osss	4	..T.	jJRs	2	T.	6s	2	.A	sJ	7	..TT...	sossssJ
-Chromosome6	293903212	C	4	.,,,	sJJJ	3	t.t	<sJ	2	at	JJ	2	t,	JJ	6	t,,,,,	JJJFJJ
-Chromosome6	293903230	A	4	C,,c	sJJJ	3	c.c	JsJ	2	,c	J7	2	,c	JJ	7	,,,,,,,	JJJFJJJ
-Chromosome6	293903309	C	4	,,tt	JJJJ	2	,t	JJ	2	,t	JF	2	,a	JJ	7	,,,,g,,	JJJJJJJ
-Chromosome6	293904353	T	0	*	*	2	.c	sF	1	,	A	0	*	*	1	c	J
-Chromosome6	294011162	C	1	T	J	0	*	*	0	*	*	2	.T	oJ	1	.	k
-Chromosome6	294012813	T	0	*	*	1	.-1A	D	0	*	*	2	,-1a^P.	s9	1	.	<
-Chromosome6	294013281	C	0	*	*	2	.G	JJ	4	..T.	JJJJ	2	.T	JJ	0	*	*
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-Chromosome6	294013302	G	0	*	*	2	.A	FJ	4	..A.	JoJJ	2	..	JJ	0	*	*
-Chromosome6	294013337	C	0	*	*	3	A..	oso	4	..T.	ssoo	2	..	js	0	*	*
-Chromosome6	294013345	G	0	*	*	3	A..	oss	4	A..A	s[ss	2	..	`s	0	*	*
-Chromosome6	294013350	A	0	*	*	3	CCC	oss	4	C.CC	ssss	2	CT	os	0	*	*
-Chromosome6	294013355	G	0	*	*	3	...	oss	4	.+1T...+1T	ssso	2	.A	os	0	*	*
-Chromosome6	294013399	G	0	*	*	3	..A	oss	4	....	ssss	2	A.	\s	0	*	*
-Chromosome6	294013405	G	0	*	*	3	...	jss	4	.T..	ssss	2	.A	os	0	*	*
-Chromosome6	294013428	C	0	*	*	3	,t,	JFJ	4	,,gg	JJJJ	2	,,	JJ	0	*	*
-Chromosome6	294013449	G	0	*	*	3	,a,	JJJ	3	,,,	JJJ	2	aa	JJ	0	*	*
-Chromosome6	294015891	C	2	,t	JJ	0	*	*	2	.g	sJ	0	*	*	1	,	7
-Chromosome6	294015895	G	2	,a	JJ	0	*	*	2	.a	oF	0	*	*	1	,	J
-Chromosome6	294015931	G	2	a,	JJ	0	*	*	2	.a	jJ	0	*	*	1	,	F
-Chromosome6	294023182	G	2	..	JJ	2	T.	JJ	0	*	*	0	*	*	1	T	J
-Chromosome6	294023251	C	2	TT	JJ	3	...	9JJ	0	*	*	0	*	*	2	T.	JJ
-Chromosome6	294023317	T	2	cc	JJ	3	.,c	sFJ	0	*	*	0	*	*	2	.,	sJ
-Chromosome6	294024817	C	0	*	*	2	.T	os	0	*	*	1	T	j	1	.	F
-Chromosome6	294090453	A	1	g	F	1	.	s	0	*	*	0	*	*	2	gc	JJ
-Chromosome6	294118396	G	1	.	J	1	A	J	0	*	*	3	.A.	JJJ	0	*	*
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-Chromosome6	294173018	A	1	.	o	0	*	*	0	*	*	2	T.	JJ	1	T	J
-Chromosome6	294173024	G	1	.	`	0	*	*	0	*	*	2	.A	JJ	1	A	J
-Chromosome6	294226508	G	3	T.T	<sF	1	.	J	1	T	F	0	*	*	0	*	*
-Chromosome6	294268895	G	0	*	*	3	.AA	JJJ	1	.	J	1	T	o	0	*	*
-Chromosome6	294268946	C	0	*	*	3	G..	JJJ	1	G	J	1	.	`	0	*	*
-Chromosome6	294268956	G	0	*	*	3	..T	sJJ	1	.	s	1	C	e	0	*	*
-Chromosome6	294268974	G	0	*	*	3	.CC	oJJ	1	.	o	1	T	s	0	*	*
-Chromosome6	294349170	G	1	A	<	1	.	J	0	*	*	0	*	*	3	.A.	J7J
-Chromosome6	294349468	C	1	a	J	1	.	s	0	*	*	0	*	*	3	a,,	FJF
-Chromosome6	294349501	C	1	a	J	1	.	s	0	*	*	0	*	*	3	a,,	JJF
-Chromosome6	294349518	C	1	t	J	1	,	J	0	*	*	0	*	*	3	t,,	JJJ
-Chromosome6	294403630	T	2	.C	FF	1	.	F	2	CC	FF	0	*	*	0	*	*
-Chromosome6	294403672	G	2	A.	FJ	1	.	J	2	AA	JJ	0	*	*	0	*	*
-Chromosome6	294438798	A	2	.C	JA	0	*	*	0	*	*	1	C	J	2	..	JJ
-Chromosome6	294438805	C	2	T.	JJ	0	*	*	0	*	*	1	.	<	2	T.	<J
-Chromosome6	294438809	G	2	.-4TTAA.-4TTAA	JJ	0	*	*	0	*	*	1	.-4TTAA	J	2	.-4TTAA.-4TTAA	<J
-Chromosome6	294438862	A	1	.-1G	J	0	*	*	0	*	*	1	.-1G	J	2	.-1G.-1G	FJ
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-Chromosome6	294746250	A	1	.-1T	J	0	*	*	0	*	*	1	.-1T	J	1	.-1T	J
-Chromosome6	294752095	T	1	.-2GC	J	2	.-2GC.-2GC	JJ	0	*	*	0	*	*	2	.-2GC.	JJ
-Chromosome6	294752166	T	1	.-3TAG	:	2	.-3TAG.-3TAG	::	0	*	*	0	*	*	2	.-3TAG.-3TAG	7:
-Chromosome6	294752335	C	1	,-2aa	7	2	,-2aa,-2aa	JJ	0	*	*	0	*	*	2	,-2aa,-2aa	JJ
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-Chromosome6	295098235	G	0	*	*	1	.-2TT	J	1	.-1T	<	1	.-2TT	F	1	.-2TT	F
-Chromosome6	295105476	C	1	,	o	1	g	J	2	tg	JJ	0	*	*	0	*	*
-Chromosome6	295475795	G	0	*	*	0	*	*	1	.-1A	J	1	.-1A	J	1	.-1A	J
-Chromosome6	295495238	C	0	*	*	1	.	J	0	*	*	1	T	F	2	.T	JA
-Chromosome6	295495307	T	0	*	*	1	.	s	0	*	*	1	C	s	2	C.	sJ
-Chromosome6	295570709	A	0	*	*	1	,-1t	J	1	,-1t	J	0	*	*	2	,-1t,-1t	JJ
-Chromosome6	295643555	G	1	.-1T	D	0	*	*	0	*	*	1	.	J	1	.-1T	E
-Chromosome6	295889482	T	0	*	*	0	*	*	1	.-6TATATA	:	1	.-6TATATA	:	1	.-6TATATA	:
-Chromosome6	295901866	T	3	..C	ssF	0	*	*	4	.C..	sJks	3	...	osJ	4	..CC	oFJF
-Chromosome6	295901868	A	3	...	soJ	0	*	*	4	.G..	sFjs	3	C..	ssJ	4	C...	oFJF
-Chromosome6	296029841	T	0	*	*	1	,	F	0	*	*	1	.-1C	j	1	,-1c	J
-Chromosome6	296103007	A	0	*	*	1	.	s	2	.G	sq	2	.g	oH	0	*	*
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-Chromosome6	296103054	C	0	*	*	1	.	s	2	.T	ss	2	.t	ss	0	*	*
-Chromosome6	296103125	T	0	*	*	1	.	s	2	.A	ss	2	.a	ss	0	*	*
-Chromosome6	296103140	G	0	*	*	1	.	s	2	.A	ss	2	.a	sJ	0	*	*
-Chromosome6	296123634	C	0	*	*	1	,-9atcccgagt	I	0	*	*	1	,-9atcccgagt	I	1	.	J
-Chromosome6	296213389	A	1	,	A	0	*	*	1	.-14TATTGTTGTGTATG	Y	1	,-14tattgttgtgtatg	=	0	*	*
-Chromosome6	296220733	T	6	.GGGGG	J7JJJJ	1	.	J	3	..G	JJJ	2	GG	FJ	7	G..GGGG	7FJJJJJ
-Chromosome6	296220747	C	6	...T..	F<JJJF	1	.	J	3	.T.	JJF	2	T.	JJ	7	...T...	JFFJJJJ
-Chromosome6	296220925	C	5	,,,,t	J<JJF	0	*	*	3	,,,	JJJ	2	t,	JF	6	,g,t,,	7JJJJJ
-Chromosome6	296274081	T	2	c,	<J	0	*	*	0	*	*	3	,,,	JJJ	1	c	J
-Chromosome6	296274091	C	2	t,	JA	0	*	*	0	*	*	3	,,,	A<F	1	t	J
-Chromosome6	296274109	C	2	,t	JJ	0	*	*	0	*	*	3	,tt	7JJ	1	,	J
-Chromosome6	296367997	A	0	*	*	2	,,	JJ	2	g,	JJ	2	gg	JJ	0	*	*
-Chromosome6	296368003	C	1	t	J	2	t,	JJ	2	,t	JJ	2	,,	JJ	0	*	*
-Chromosome6	296418260	C	0	*	*	1	T	M	2	T.	cR	2	T.	js	3	.TT	sss
-Chromosome6	296464053	A	2	,,	os	0	*	*	0	*	*	2	,G	s9	3	gGG	OE9
-Chromosome6	296464066	A	2	,,-3aat	U>	0	*	*	0	*	*	1	,-3aat	?	3	,-3aat.-3AAT.-3AAT	???
-Chromosome6	296464117	C	2	,A	CA	0	*	*	0	*	*	2	,.	ss	3	a.A	sss
-Chromosome6	296464118	C	2	,,	A\	0	*	*	0	*	*	2	,A	ss	3	t.T	oss
-Chromosome6	296464122	C	2	,t	sk	0	*	*	0	*	*	2	tT	ss	3	,T.	jos
-Chromosome6	296464168	C	2	,,	oo	0	*	*	0	*	*	1	g	F	3	,.a	ojF
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-Chromosome6	296499503	T	0	*	*	1	A	s	0	*	*	2	GA	ss	3	.AA	Jss
-Chromosome6	296499515	T	0	*	*	1	C	s	0	*	*	2	.C	oo	3	.CC	Jss
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-Chromosome6	296684284	A	0	*	*	2	G.	JJ	0	*	*	1	.	J	5	.GGG.	JJJJJ
-Chromosome6	296852865	G	0	*	*	2	..	Hs	1	A	J	2	.,-1t	Js	0	*	*
-Chromosome6	296852870	T	0	*	*	2	.+1C.+1C	ae	1	.	J	1	C	J	0	*	*
-Chromosome6	296852989	C	0	*	*	1	,-2at	J	1	,-2at	J	2	,,-2at	AJ	1	.-2AT	s
-Chromosome6	296876699	T	1	.-1C	J	1	.-1C	F	0	*	*	1	.-1C	J	1	.-1C	J
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-Chromosome6	297188093	G	0	*	*	1	.-2GT	S	0	*	*	1	.-2GT	S	1	,-2gt	9
-Chromosome6	297206384	C	0	*	*	0	*	*	1	t	J	2	,t	sJ	1	,	J
-Chromosome6	297206388	G	0	*	*	0	*	*	1	,-3ttt	J	2	,-3ttt,-3ttt	sJ	1	,	J
-Chromosome6	297256235	G	2	a,	JF	0	*	*	0	*	*	1	a	J	2	,,	J7
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-Chromosome6	297341985	A	0	*	*	0	*	*	2	CC	<7	3	,C.	A<7	1	.	J
-Chromosome6	297341994	T	0	*	*	0	*	*	1	C	<	3	,C.	F7A	1	.	<
-Chromosome6	297346886	C	0	*	*	2	.T	nJ	0	*	*	2	T.	Jj	1	.	[
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-Chromosome6	297502255	T	4	.,,.	aJJj	5	,,.,G	JAVF<	0	*	*	10	,,...g,Gg,	J:oooFJ`JJ	1	g	F
-Chromosome6	297502816	C	1	G	s	0	*	*	4	a..G	AWe7	3	.G.	s>J	0	*	*
-Chromosome6	297503188	C	1	A	s	0	*	*	2	,T	JW	1	.	k	0	*	*
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-Chromosome6	297506302	T	3	.,C	VsF	2	.C	oA	0	*	*	2	,C	sJ	0	*	*
-Chromosome6	297512239	G	0	*	*	3	,,a	JJF	2	Aa	`<	3	,,,	JJJ	0	*	*
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-Chromosome6	297564386	C	0	*	*	2	,a	JJ	1	a	J	0	*	*	1	,	J
-Chromosome6	297564413	C	0	*	*	2	,t	JJ	1	t	<	0	*	*	1	,	J
-Chromosome6	297747794	C	2	T.	JJ	0	*	*	1	.	o	1	T	J	0	*	*
-Chromosome6	297749885	C	1	.	?	0	*	*	1	.-1G	j	0	*	*	1	.-1G	J
-Chromosome6	297749994	A	0	*	*	1	.-1T	A	1	,	J	0	*	*	1	.-3TTT	J
-Chromosome6	297750189	C	1	,	F	1	,-1a	J	1	,-1a	J	0	*	*	1	,-1a	J
-Chromosome6	297831605	C	1	.	J	2	.G	JJ	0	*	*	1	G	J	0	*	*
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-Chromosome6	297831673	T	1	.	J	2	.A	FF	0	*	*	1	A	J	0	*	*
-Chromosome6	297832153	G	1	c	J	2	c,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome6	297832180	A	1	,-1t	A	2	,-1t,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome6	297843935	T	2	c,	JJ	2	,,	FF	1	c	J	0	*	*	0	*	*
-Chromosome6	297854022	T	1	c	J	1	.	s	2	,C	Js	0	*	*	0	*	*
-Chromosome6	297854076	C	1	,-1t	J	1	.	s	3	,.,-1t	JJJ	0	*	*	0	*	*
-Chromosome6	298473366	G	0	*	*	0	*	*	1	A	F	3	...	FsF	2	A.	JA
-Chromosome6	298473438	A	1	.	J	0	*	*	0	*	*	2	CC	sJ	2	C.	JJ
-Chromosome6	298474401	C	1	.	7	0	*	*	2	TT	`s	0	*	*	3	T..	7As
-Chromosome6	298474423	C	1	.	A	0	*	*	2	TT	oa	0	*	*	2	.T	Js
-Chromosome6	298537051	G	0	*	*	2	..	JJ	3	..A	JAJ	5	....A	JJJJJ	0	*	*
-Chromosome6	298579302	A	1	.	a	2	TT	ss	0	*	*	3	.TT	Fss	0	*	*
-Chromosome6	298579357	A	1	.	V	2	Gg	sJ	0	*	*	3	.gg	oJJ	0	*	*
-Chromosome6	298579369	G	1	,-1a	J	1	.-1A	s	0	*	*	3	.,-1a,-1a	VJJ	0	*	*
-Chromosome6	298656953	G	1	,-3aga	:	0	*	*	0	*	*	2	,-3aga,-3aga	::	1	,-3aga	:
-Chromosome6	298657028	T	1	,-1a	A	0	*	*	0	*	*	2	,-1a,-1a	AJ	1	,-1a	J
-Chromosome6	298663066	A	1	.-1G	J	0	*	*	0	*	*	1	.-1G	J	1	.	s
-Chromosome6	298673985	G	0	*	*	1	.-3CTT	s	0	*	*	1	,-3ctt	J	1	,+3ctc	J
-Chromosome6	298904159	C	0	*	*	3	T..	JJJ	1	.	F	1	T	J	0	*	*
-Chromosome6	298904240	T	0	*	*	3	G..	sjo	1	.	s	1	G	s	0	*	*
-Chromosome6	298904285	C	0	*	*	3	ATT	sVR	1	T	o	1	A	s	0	*	*
-Chromosome6	299003089	G	2	.A	JJ	1	A	s	0	*	*	1	,	e	0	*	*
-Chromosome6	299003100	G	2	C.	JJ	1	.	s	0	*	*	1	c	s	0	*	*
-Chromosome6	299003141	T	2	.G	JJ	1	G	s	0	*	*	1	,	o	0	*	*
-Chromosome6	299004708	G	1	t	J	0	*	*	2	t,	JJ	1	.	s	0	*	*
-Chromosome6	299013049	C	0	*	*	4	,...	J<JJ	3	t..	JsJ	1	t	J	0	*	*
-Chromosome6	299013334	C	5	,,,,,	AJJJJ	8	,,,,,,,a	JJJAJ<7A	8	,,,,,,,a	FJJFFAJF	2	,a	JF	14	,,,,,,,,,,,,a,	FJAF7JJJAAJJFA
-Chromosome6	299081943	C	0	*	*	2	.T	os	1	,	s	3	A.,	ssJ	0	*	*
-Chromosome6	299145775	G	0	*	*	0	*	*	1	.	J	1	T	J	2	T.	J7
-Chromosome6	299145780	G	0	*	*	0	*	*	1	.	J	1	A	J	2	A.	JJ
-Chromosome6	299145832	G	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	JJ
-Chromosome6	299145839	T	0	*	*	0	*	*	1	.-4GATC	;	1	.-4GATC	;	2	.-4GATC.-4GATC	;7
-Chromosome6	299528057	A	1	,	J	0	*	*	2	G.	Vs	2	G,	\F	0	*	*
-Chromosome6	299528075	C	1	t	J	0	*	*	2	T,	sF	2	,a	J<	0	*	*
-Chromosome6	299528078	G	1	a	J	0	*	*	2	.t	sJ	2	a,	J<	0	*	*
-Chromosome6	299528081	T	1	a	J	0	*	*	2	.,	oJ	2	a,	J7	0	*	*
-Chromosome6	299528090	T	1	c	J	0	*	*	2	.,	sJ	2	c,	J7	0	*	*
-Chromosome6	299673240	A	0	*	*	1	,	J	0	*	*	2	gg	JJ	4	ggg,	JJJJ
-Chromosome6	300022707	T	1	.	s	2	.+2AA.	oJ	3	,-1a..	JJJ	0	*	*	0	*	*
-Chromosome6	300022816	C	0	*	*	1	T	j	2	t,	JJ	0	*	*	1	,	J
-Chromosome6	300093735	G	0	*	*	1	T	J	0	*	*	2	T.	JJ	2	T.	<F
-Chromosome6	300093757	T	0	*	*	1	.-2TG	<	0	*	*	2	.-2TG.-2TG	<<	2	.-2TG.	=A
-Chromosome6	300093869	T	0	*	*	1	c	J	0	*	*	3	,cC	JJ\	2	ca	J<
-Chromosome6	300093898	T	0	*	*	1	,+1c	F	0	*	*	3	,,+1c.+1C	JJo	2	,+1c,+1c	J<
-Chromosome6	300093939	G	0	*	*	1	c	J	0	*	*	3	,c.	JJs	2	,,	JA
-Chromosome6	300290011	A	1	.	J	0	*	*	2	g.	sJ	0	*	*	1	G	<
-Chromosome6	300290014	G	1	A	J	0	*	*	2	,A	sA	0	*	*	1	.	A
-Chromosome6	300290025	G	1	.-3TTT	J	0	*	*	2	,-3ttt.-3TTT	sJ	0	*	*	1	.-3TTT	J
-Chromosome6	300290067	C	1	T	J	0	*	*	2	,T	sJ	0	*	*	1	.	<
-Chromosome6	300290975	G	0	*	*	1	,-1a	<	2	,-1a,-2aa	J?	1	,-3aaa	J	0	*	*
-Chromosome6	300324332	G	0	*	*	1	.-5ACCGT	S	1	.-5ACCGT	:	1	.-5ACCGT	:	0	*	*
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-Chromosome6	300353611	T	1	c	J	0	*	*	1	,	J	2	.c	jJ	0	*	*
-Chromosome6	300353627	C	1	t	J	0	*	*	1	,	J	2	T,	sJ	0	*	*
-Chromosome6	300353667	G	1	,	J	0	*	*	1	a	A	2	a,	JJ	0	*	*
-Chromosome6	300384485	T	0	*	*	1	.-1C	G	0	*	*	1	.-1C	G	1	.	J
-Chromosome6	300438107	A	0	*	*	4	.gGG	jJss	1	G	j	0	*	*	1	.	J
-Chromosome6	300438117	C	0	*	*	4	.tTT	HJss	1	T	s	0	*	*	1	.	F
-Chromosome6	300438120	G	0	*	*	4	aAA,	Joo:	1	A	o	0	*	*	1	.	A
-Chromosome6	300438124	T	0	*	*	4	cCC,	JssA	1	C	s	0	*	*	1	.	F
-Chromosome6	300438227	C	0	*	*	4	a,aa	CF@@	1	a	J	0	*	*	1	,	J
-Chromosome6	300489133	G	0	*	*	1	.	s	0	*	*	2	.C	sA	1	C	F
-Chromosome6	300489136	T	0	*	*	1	.	s	0	*	*	2	.C	sJ	1	C	J
-Chromosome6	300489157	G	0	*	*	1	.-9ACGATCGAC	I	0	*	*	2	.-9ACGATCGAC.	^j	1	.	J
-Chromosome6	300489186	T	0	*	*	1	C	s	0	*	*	2	C.	J`	1	.	J
-Chromosome6	300489192	G	0	*	*	1	A	n	0	*	*	2	A.	Jj	1	.	F
-Chromosome6	300496498	C	3	.T.	JJJ	0	*	*	1	T	J	0	*	*	2	.T	JJ
-Chromosome6	300496500	G	3	T.T	JJJ	0	*	*	1	.	J	0	*	*	2	T.	JJ
-Chromosome6	300496511	A	3	.-1T..-1T	JJJ	0	*	*	1	.	J	0	*	*	2	.-1T.	JJ
-Chromosome6	300496561	T	3	.-1A..-1A	FJJ	0	*	*	1	.	J	0	*	*	2	.-1A.	JJ
-Chromosome6	300496683	T	3	c,c	JJJ	0	*	*	1	,	J	0	*	*	2	c,	JJ
-Chromosome6	300616419	A	1	.-5GCTCG	O	1	.-5GCTCG	8	1	.	o	0	*	*	0	*	*
-Chromosome6	300731683	A	2	GG	JJ	1	.	A	4	G...	JAAA	2	G.	JA	3	GG.	JFA
-Chromosome6	300731764	C	0	*	*	1	.	s	4	T...	FJJJ	2	T.	JF	1	T	J
-Chromosome6	300731822	G	0	*	*	1	.	s	5	....a	osskJ	3	..a	ssJ	3	.a,	fFA
-Chromosome6	300748865	G	1	.	J	0	*	*	0	*	*	2	A,	FJ	1	A	J
-Chromosome6	300912586	A	1	,-1t	7	0	*	*	1	,	F	1	,-1t	F	0	*	*
-Chromosome6	300938902	A	1	.-6AGTCAC	I	1	,+1c	F	0	*	*	1	.-6AGTCAC	5	1	.-6AGTCAC	5
-Chromosome6	301195322	C	2	..	Js	0	*	*	2	.T	JJ	0	*	*	1	T	J
-Chromosome6	301195334	C	2	..	Js	0	*	*	2	TA	J]	0	*	*	1	A	J
-Chromosome6	301270456	T	2	,c	JJ	0	*	*	2	,c	JF	1	,	J	2	,c	JJ
-Chromosome6	301292130	A	1	,	J	3	,,g	JJA	0	*	*	1	g	J	0	*	*
-Chromosome6	301482242	C	3	,-4ctct,-4ctct,-4ctct	989	1	,-4ctct	9	1	,-4ctct	9	0	*	*	0	*	*
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-Chromosome6	301509809	G	0	*	*	1	t	J	0	*	*	2	,T	Js	1	,	A
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-Chromosome6	301511360	G	1	,	7	0	*	*	2	,A	Js	1	t	J	0	*	*
-Chromosome6	301519008	T	1	.	J	2	,C	sJ	0	*	*	0	*	*	1	C	J
-Chromosome6	301519029	T	1	.	J	2	,G	sJ	0	*	*	1	g	J	1	A	J
-Chromosome6	301594924	T	0	*	*	1	,-1a	E	0	*	*	1	,-1a	E	2	,,	JJ
-Chromosome6	301739529	C	2	.T	AJ	0	*	*	2	TT	JF	0	*	*	1	.	J
-Chromosome6	301739776	A	1	g	J	0	*	*	2	,g	F<	0	*	*	1	,	J
-Chromosome6	301739882	G	2	a,	F7	0	*	*	1	a	J	0	*	*	1	,	J
-Chromosome6	301739918	G	2	a,	JJ	0	*	*	1	a	J	0	*	*	1	,	J
-Chromosome6	301816325	A	1	g	J	1	,	J	0	*	*	2	.g	eJ	0	*	*
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-Chromosome6	301816365	C	1	,	<	1	t	J	0	*	*	2	T,	j<	0	*	*
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-Chromosome6	302115989	G	0	*	*	0	*	*	3	t,,	JJJ	3	,$T,	@sJ	1	,	J
-Chromosome6	302115990	T	0	*	*	0	*	*	3	a,,	JAJ	2	A,	sJ	1	,	J
-Chromosome6	302116003	G	0	*	*	0	*	*	3	a,,	JFJ	2	a,	JJ	1	,	F
-Chromosome6	302279432	G	3	CC.	B87	0	*	*	3	..T	9F7	0	*	*	1	.	o
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-Chromosome6	302357957	T	2	..	FJ	0	*	*	0	*	*	2	.C	JJ	1	C	J
-Chromosome6	302357976	A	2	..	7J	0	*	*	0	*	*	2	.G	JJ	1	G	J
-Chromosome6	302368498	A	0	*	*	1	.	s	1	G	J	2	.G	JJ	0	*	*
-Chromosome6	302368595	G	0	*	*	1	,	J	1	,-3cta	F	2	.-3CTA,	sJ	0	*	*
-Chromosome6	302552298	T	1	,-1g	F	0	*	*	2	,-1g,-1g	FF	2	,-1g,-1g	FF	1	,-1g	F
-Chromosome6	302696172	T	1	,-1c	J	1	,-1c	F	0	*	*	1	,-1c	J	4	,-1c,-1c,-1c,-1c	JJJJ
-Chromosome6	302846809	G	2	..	JJ	0	*	*	1	.-2AA	J	0	*	*	1	.-2AA	F
-Chromosome6	303170879	T	0	*	*	1	,	J	0	*	*	3	a,,	7JJ	1	a	J
-Chromosome6	303170930	C	0	*	*	1	t	J	0	*	*	3	,tt	JFJ	1	,	J
-Chromosome6	303376233	C	0	*	*	0	*	*	3	.A,	JJJ	1	A	s	1	.	J
-Chromosome6	303376319	A	0	*	*	0	*	*	3	T.t	JJJ	1	T	s	1	.	J
-Chromosome6	303376745	G	1	.-2CT	A	1	.-2CT	J	1	.	J	0	*	*	0	*	*
-Chromosome6	303376955	T	1	,-1a	F	1	,-1a	F	1	,	J	0	*	*	0	*	*
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-Chromosome6	303551272	A	1	.-3TAC	;	0	*	*	1	.-3TAC	;	0	*	*	1	.-3TAC	;
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-Chromosome6	303553847	T	0	*	*	0	*	*	1	^Z.	A	1	C	J	2	C.$	JE
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-Chromosome6	303556493	C	2	T.	JJ	2	.T	JJ	0	*	*	1	T	J	0	*	*
-Chromosome6	303556524	C	2	T.	FJ	2	..	JJ	0	*	*	1	T	F	0	*	*
-Chromosome6	303556531	G	2	A.	JJ	2	..	JJ	0	*	*	1	A	J	0	*	*
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-Chromosome6	303556550	C	2	T.	JJ	2	..	JJ	0	*	*	1	T	J	0	*	*
-Chromosome6	303602868	T	1	.	J	2	.C	JJ	3	C..	JJJ	0	*	*	3	..C	JJJ
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-Chromosome6	303711460	T	1	C	J	0	*	*	1	.	J	2	C.	JJ	0	*	*
-Chromosome6	303711595	A	1	c	J	0	*	*	1	,	J	2	,c	JJ	0	*	*
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-Chromosome6	303711610	T	1	c	J	0	*	*	1	,	J	2	,c	JJ	0	*	*
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-Chromosome6	303974664	C	0	*	*	1	T	J	2	.T	JJ	0	*	*	2	T.	JJ
-Chromosome6	304082504	A	0	*	*	0	*	*	1	C	e	2	C.	so	1	.	o
-Chromosome6	304082513	T	0	*	*	0	*	*	1	c	J	2	c,	JJ	1	,	J
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-Chromosome6	304109171	C	0	*	*	2	g,	JJ	1	,	A	0	*	*	1	g	F
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-Chromosome6	304145874	G	1	t	J	0	*	*	0	*	*	2	,,	JJ	2	,t	JJ
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-Chromosome6	304206519	A	2	TC	JJ	1	T	J	0	*	*	0	*	*	2	TC	AF
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-Chromosome6	304206562	C	2	A.	JJ	1	A	J	0	*	*	0	*	*	2	..	JJ
-Chromosome6	304206575	G	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5<
-Chromosome6	304206576	G	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5F
-Chromosome6	304206579	A	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5A
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-Chromosome6	304206581	A	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5A
-Chromosome6	304206590	T	2	A.	JJ	1	A	J	0	*	*	0	*	*	2	A.	FJ
-Chromosome6	304206594	C	2	T.	JJ	1	T	<	0	*	*	0	*	*	2	T.	FA
-Chromosome6	304206606	A	2	T.	JJ	1	T	J	0	*	*	0	*	*	2	T.	JA
-Chromosome6	304206804	T	2	a,	JF	1	,	J	0	*	*	0	*	*	2	aa	FF
-Chromosome6	304206809	C	2	,-3agt,	JF	1	,	J	0	*	*	0	*	*	2	,-3agtt	JF
-Chromosome6	304206823	T	2	,,-1a	JJ	1	,-1a	F	0	*	*	0	*	*	2	,,-1a	F:
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-Chromosome6	304263102	C	4	,,,,	JJJF	0	*	*	2	t,	<J	0	*	*	6	.a,,,,	sFJJ<<
-Chromosome6	304263113	G	4	,,aa	FJJJ	0	*	*	2	,,	FJ	0	*	*	6	.,t,,,	oJJJJA
-Chromosome6	304263121	T	2	gg	JJ	0	*	*	1	,	J	0	*	*	6	.,,,g,	sFJJJJ
-Chromosome6	304263127	T	3	,,,	FJJ	0	*	*	1	c	J	0	*	*	6	.,,c,,	sJJJ<F
-Chromosome6	304263150	G	3	,,,	JJJ	0	*	*	1	t	J	0	*	*	6	.$,,t,,	nJJJF7
-Chromosome6	304263958	C	0	*	*	2	t,	JJ	0	*	*	1	.	F	1	a	A
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-Chromosome6	304334696	A	0	*	*	1	G	s	1	.	W	2	,g	JJ	0	*	*
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-Chromosome6	324097623	C	0	*	*	1	.	J	1	A	J	0	*	*	4	..A.	JJJJ
-Chromosome6	324103496	C	0	*	*	1	T	F	1	.	J	2	.G	Je	0	*	*
-Chromosome6	324103584	G	0	*	*	2	..	7J	1	T	F	2	T.	Js	0	*	*
-Chromosome6	324104964	T	0	*	*	1	.-5TACAC	<	1	.-5TACAC	=	0	*	*	1	.-5TACAC	=
-Chromosome6	324123179	T	0	*	*	0	*	*	2	,g	FJ	1	g	J	2	,,	JJ
-Chromosome6	324346411	C	0	*	*	0	*	*	2	T.	ss	1	.	s	2	.T	ss
-Chromosome6	324430836	G	3	,CC	sJJ	0	*	*	1	C	J	1	.	J	0	*	*
-Chromosome6	324430885	C	3	,.-1T.-1T	sFJ	0	*	*	1	.-1T	J	1	.	J	0	*	*
-Chromosome6	324430902	T	3	,CC	s7J	0	*	*	1	C	J	1	.	J	0	*	*
-Chromosome6	324430912	T	3	,CC	sJJ	0	*	*	1	C	J	1	.	F	0	*	*
-Chromosome6	324430918	C	3	t.-1T.-1T	sJJ	0	*	*	1	.	J	1	T	F	0	*	*
-Chromosome6	324556391	G	0	*	*	1	.	o	1	A	J	4	..AA	JJsV	0	*	*
-Chromosome6	324556401	A	0	*	*	1	.	s	1	G	J	4	..GG	JJss	0	*	*
-Chromosome6	324632081	G	0	*	*	1	A	J	1	.	J	2	.A	JJ	0	*	*
-Chromosome6	324632228	G	0	*	*	1	a	J	1	,	J	2	,a	JJ	0	*	*
-Chromosome6	324636553	G	0	*	*	0	*	*	1	.-2AT	J	1	.	J	2	..-2AT	JJ
-Chromosome6	324636616	A	0	*	*	0	*	*	1	G	V	1	.	s	2	.G	ss
-Chromosome6	324653957	T	5	,aa,,	JJJF<	5	,,,,,	FJAJJ	2	aa	7J	8	,,,,a,,,	J<<<AJAA	7	,a,,,aa	JJJ7JJJ
-Chromosome6	324654298	G	4	a,,,	JJJJ	0	*	*	0	*	*	1	.	s	1	a	F
-Chromosome6	324860329	T	0	*	*	0	*	*	2	C.	FJ	1	.	J	2	CC	JJ
-Chromosome6	324860332	G	0	*	*	0	*	*	2	C.	JJ	1	.	J	2	CC	JJ
-Chromosome6	324862737	A	1	C	J	2	T.	FJ	2	.C	JF	2	.C	JJ	2	..	JJ
-Chromosome6	324862799	A	1	.	J	2	.G	JJ	2	G.	J7	2	G.	FJ	2	.G	JA
-Chromosome6	324888414	A	0	*	*	2	.,	Ja	0	*	*	2	,G	H7	1	G	A
-Chromosome6	324951331	T	0	*	*	0	*	*	1	.	s	1	C	J	4	..C.	JJFJ
-Chromosome6	324951416	C	0	*	*	0	*	*	1	,	J	1	t	J	4	g,,,	JJFJ
-Chromosome6	324953309	C	5	....T	J7JJJ	0	*	*	8	......TT	AJJJJAF<	2	T.	JJ	6	......	J<JJJJ
-Chromosome6	324953554	T	3	,c,	JJ<	0	*	*	7	,,,,c,,	JJAJJJF	2	,,	AF	4	,c,,	J7FF
-Chromosome6	325124671	A	0	*	*	1	.	J	2	G.	JJ	1	G	s	0	*	*
-Chromosome6	325127737	A	0	*	*	2	.+1T.	bJ	2	.,	JJ	3	..g	JJJ	0	*	*
-Chromosome6	325150828	A	0	*	*	0	*	*	1	C	J	2	..	JJ	2	T.	JJ
-Chromosome6	325151005	A	0	*	*	0	*	*	1	g	J	1	,	J	3	.gg	WJ<
-Chromosome6	325178023	T	2	.C	sJ	1	C	J	0	*	*	2	.C	JA	1	.$	A
-Chromosome6	325325432	C	2	.+7GAGGTAT.+7GAGGTAT	GJ	0	*	*	0	*	*	2	.+7GAGGTAT.+7GAGGTAT	HC	1	.+7GAGGTAT	s
-Chromosome6	325325444	T	2	.+4CTGC.+4CTGC	77	0	*	*	0	*	*	2	.+4CTGC.+4CTGC	77	2	.+4CTGC,+4ctgc	77
-Chromosome6	325350609	G	2	..	<J	0	*	*	1	A	F	0	*	*	2	.A	JJ
-Chromosome6	325601817	A	0	*	*	1	.	J	0	*	*	1	G	J	2	G.	JJ
-Chromosome6	325660546	C	0	*	*	1	,-1t	J	1	,-1t	J	0	*	*	1	,-1t	J
-Chromosome6	325732633	G	0	*	*	1	T	J	2	T.	JJ	0	*	*	1	.	J
-Chromosome6	325732771	G	0	*	*	1	T	s	2	t,	JJ	0	*	*	1	,	J
-Chromosome6	325757594	C	1	,	9	0	*	*	1	,-4tcga	:	1	,-4tcga	5	0	*	*
-Chromosome6	325828243	T	1	C	J	1	.	F	0	*	*	2	GC	A7	2	C.	FJ
-Chromosome6	325828440	C	1	t	J	1	,	J	0	*	*	2	t,	FJ	2	t,	FJ
-Chromosome6	325828534	C	1	t	7	1	,	J	0	*	*	2	t,	;A	2	t,	7J
-Chromosome6	325950772	C	0	*	*	0	*	*	1	G	M	2	G,	es	1	,	J
-Chromosome6	325969297	T	1	,	J	0	*	*	1	*	5	2	*,	5J	0	*	*
-Chromosome6	325985574	T	0	*	*	1	,	J	1	,-4ttgc	5	1	,-4ttgc	5	0	*	*
-Chromosome6	326003306	G	1	A	j	1	.	J	0	*	*	2	a.	Jo	0	*	*
-Chromosome6	326195981	G	0	*	*	0	*	*	2	t,	JJ	2	,,	7J	1	t	J
-Chromosome6	326293749	A	2	T.	AJ	1	T	A	0	*	*	0	*	*	1	.	J
-Chromosome6	326293770	T	2	C.	7F	1	C	F	0	*	*	0	*	*	1	.	J
-Chromosome6	326293810	A	3	G..	<JF	1	G	A	0	*	*	0	*	*	1	.	J
-Chromosome6	326293831	G	2	.A	7J	1	A	A	0	*	*	0	*	*	1	.	J
-Chromosome6	326293833	G	2	.A	FJ	1	A	<	0	*	*	0	*	*	1	.	J
-Chromosome6	326293853	C	2	.T	<J	1	T	7	0	*	*	0	*	*	1	.	J
-Chromosome6	326363969	G	2	T.	sJ	1	.	A	0	*	*	1	T	J	0	*	*
-Chromosome6	326363996	G	2	.A	sJ	1	.	J	0	*	*	1	A	s	0	*	*
-Chromosome6	326364050	G	2	A,	JJ	1	a	J	0	*	*	1	.	s	0	*	*
-Chromosome6	326419318	A	0	*	*	1	.-1T	J	2	..-1T	AJ	0	*	*	2	.+1T,+1t	JJ
-Chromosome6	326419395	G	0	*	*	1	a	J	2	A,	sJ	0	*	*	1	,	J
-Chromosome6	326419437	T	0	*	*	1	a	J	2	,a	<J	0	*	*	1	,	J
-Chromosome6	326622262	T	1	.	<	0	*	*	0	*	*	1	.-2GC	J	2	.-2GC*	JJ
-Chromosome6	326639008	G	1	.	s	0	*	*	1	T	J	2	,T	Fs	0	*	*
-Chromosome6	326639042	T	2	..	so	0	*	*	1	G	J	3	,G.	JsJ	0	*	*
-Chromosome6	326639048	C	3	..,	sRF	0	*	*	1	T	J	3	,T.	FsJ	0	*	*
-Chromosome6	326639056	A	3	.gg	sJJ	0	*	*	1	G	J	3	,GG	Jss	1	,	A
-Chromosome6	326639058	C	3	.,,	sFJ	0	*	*	1	A	J	3	,A.	Jss	0	*	*
-Chromosome6	326639101	A	3	.gg	sJJ	0	*	*	0	*	*	3	,c.+6TGCCGC	JJW	1	,	7
-Chromosome6	326639102	C	3	.tt	sJJ	0	*	*	0	*	*	2	,a	JJ	1	,	A
-Chromosome6	326639103	A	3	.gg	sJJ	0	*	*	0	*	*	3	,tG	JJ5	1	,	A
-Chromosome6	326639111	G	3	.aa	sJJ	0	*	*	0	*	*	3	aa*	JJs	1	a	7
-Chromosome6	326639120	T	3	.cc	sJJ	0	*	*	0	*	*	2	cC	Js	1	,	J
-Chromosome6	326639143	A	3	tt,	JJJ	0	*	*	1	,	J	2	,T	Js	0	*	*
-Chromosome6	326639511	C	2	.T	JJ	0	*	*	1	T	J	2	..-6AAGAGT	JH	0	*	*
-Chromosome6	326639513	A	2	.G	JF	0	*	*	1	.	J	2	.*	JF	0	*	*
-Chromosome6	326639515	A	2	.G	FA	0	*	*	1	G	J	2	.*	JF	0	*	*
-Chromosome6	326639570	G	2	A,	`J	1	,	J	0	*	*	2	A,	oJ	0	*	*
-Chromosome6	326639610	A	3	,,c	JJJ	1	,	J	1	c	J	3	,,C	JJJ	0	*	*
-Chromosome6	326639617	A	3	,,g	JJJ	1	,	J	1	g	J	3	,,G	FJF	0	*	*
-Chromosome6	326639626	A	3	g,,	JJJ	1	g	J	1	,	J	3	,g.	JJj	0	*	*
-Chromosome6	326639632	T	3	,,g	JJJ	1	,	J	1	g	J	3	g,G	JJe	0	*	*
-Chromosome6	326639640	G	3	,,,-1c	JJJ	1	,	J	1	,-1c	J	3	,,.-1C	JJs	0	*	*
-Chromosome6	326639641	C	3	,,*	JJF	1	,	J	1	*	F	3	,,*	FJi	0	*	*
-Chromosome6	326639644	T	3	,gg	JJG	1	,	F	1	g	G	3	g,G	HJk	0	*	*
-Chromosome6	326639665	G	3	,,a	JJJ	1	,	F	0	*	*	3	,,A	JJR	0	*	*
-Chromosome6	326640356	T	1	A	F	0	*	*	0	*	*	1	.	F	2	A.	JJ
-Chromosome6	326640372	A	1	G	A	0	*	*	0	*	*	1	.	F	2	G.	J<
-Chromosome6	326640466	G	1	a	J	0	*	*	0	*	*	1	.	f	2	.a	VF
-Chromosome6	326640467	G	1	a	J	0	*	*	0	*	*	1	.	k	2	,a	>J
-Chromosome6	326640480	G	1	,	J	0	*	*	0	*	*	1	A	\	2	a,	JJ
-Chromosome6	326640504	G	1	,	A	0	*	*	0	*	*	1	,-1c	F	2	,-1c,	JJ
-Chromosome6	326640505	C	1	,	F	0	*	*	0	*	*	1	*	F	2	*,	FJ
-Chromosome6	326640506	G	1	a	J	0	*	*	0	*	*	1	,	F	2	,a	FJ
-Chromosome6	326640511	G	1	a	A	0	*	*	0	*	*	1	,	J	2	,c	FJ
-Chromosome6	326640554	T	1	g	J	0	*	*	0	*	*	1	,	A	2	,g	FJ
-Chromosome6	326836778	G	0	*	*	1	.-1A	o	0	*	*	1	.	s	1	.-1A	s
-Chromosome6	326841480	A	1	.	F	2	T.	sF	0	*	*	1	T	e	0	*	*
-Chromosome6	326841483	T	1	.	J	2	G.	sJ	0	*	*	1	G	a	0	*	*
-Chromosome6	326865317	G	1	a	J	1	,	7	2	.a	sF	0	*	*	0	*	*
-Chromosome6	326901772	C	1	,-1g	F	1	,-1g	A	0	*	*	1	,-1g	J	0	*	*
-Chromosome6	326929048	A	1	,-1t	J	2	..	e`	0	*	*	1	,-1t	J	0	*	*
-Chromosome6	327056837	C	2	.A	FJ	0	*	*	0	*	*	1	A	J	2	..	JJ
-Chromosome6	327103247	T	6	.....C	JJJ<JJ	5	....C	FJJJJ	6	C.C.CC	JFJJJJ	2	..	JJ	6	C..CC.	JJJ7JJ
-Chromosome6	327103250	T	6	..CC..	AJAAFJ	5	.CC..	AJJAJ	7	.C.....	JA<FAJJ	2	..	JJ	6	..C..C	JJJ7JF
-Chromosome6	327172455	C	0	*	*	1	.-7ACCCTAA	Q	2	,-7accctaa.	Uo	0	*	*	3	...	sss
-Chromosome6	327217144	C	3	.+2AT..	FJJ	0	*	*	3	.+2AT.+2AT.	JJJ	0	*	*	3	...	FFJ
-Chromosome6	327217526	C	2	,a	JF	1	.	o	3	aa,	JJJ	6	,aa,,,	JJJJJJ	6	a,aa,,	FJ<FJA
-Chromosome6	327338090	C	1	,-5aaaaa	F	0	*	*	0	*	*	1	,-5aaaaa	J	1	,	J
-Chromosome6	327621190	T	1	,-1a	J	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J
-Chromosome6	327629090	T	3	.CC	FJ<	2	..	JJ	1	C	J	0	*	*	0	*	*
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-Chromosome6	327716468	C	0	*	*	2	T,	JJ	1	.	J	0	*	*	1	a	J
-Chromosome6	327716693	T	0	*	*	1	,-3tcc	;	1	,	J	0	*	*	1	,-3tcc	;
-Chromosome6	328009014	G	0	*	*	2	..	JJ	0	*	*	3	A..	JJJ	1	A	J
-Chromosome6	328105015	C	1	A	F	1	.	J	0	*	*	0	*	*	6	..A.A.	FFAJJJ
-Chromosome6	328137060	A	2	C.	=F	0	*	*	1	.	F	0	*	*	1	C	=
-Chromosome6	328137119	C	2	A.	J7	0	*	*	1	.	J	0	*	*	1	A	J
-Chromosome6	328137342	C	2	,t	AJ	0	*	*	1	,	J	0	*	*	1	t	J
-Chromosome6	328335218	T	0	*	*	1	.	7	2	.A	FJ	2	.A	`J	3	.AA	AJJ
-Chromosome6	328353632	C	0	*	*	0	*	*	1	,	J	1	g	J	2	g,	JJ
-Chromosome6	328353704	C	0	*	*	0	*	*	1	,	J	1	t	J	2	t,	JJ
-Chromosome6	328373415	C	0	*	*	1	.	s	0	*	*	1	,-4actt	8	2	,,-4actt	J8
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-Chromosome6	328452897	G	0	*	*	4	,,a,	JFJJ	1	,	F	0	*	*	1	a	A
-Chromosome6	328457467	C	2	T.	<J	0	*	*	3	...	JJF	0	*	*	2	.T	JJ
-Chromosome6	328457596	C	1	,	J	0	*	*	3	T,t	VFJ	0	*	*	2	,t	JJ
-Chromosome6	328489867	A	1	.	J	2	.C	J<	0	*	*	0	*	*	1	C	J
-Chromosome6	328489957	T	1	,	J	2	G,	VJ	0	*	*	0	*	*	1	G	s
-Chromosome6	328490182	T	0	*	*	3	CC.	kss	2	.C	ss	0	*	*	1	C	s
-Chromosome6	328491986	C	0	*	*	2	T.	J7	1	T	J	2	.T	JJ	0	*	*
-Chromosome6	328492093	G	0	*	*	2	C,	VJ	1	.	\	2	,c	JJ	0	*	*
-Chromosome6	328634771	G	0	*	*	1	a	J	2	,,	JJ	0	*	*	2	at	JJ
-Chromosome6	328711433	T	2	.C	FJ	3	..C	JJJ	5	CCC..	JJJ<A	3	..C	JJJ	5	C.C..	AJ7JJ
-Chromosome6	329244222	T	1	.	s	0	*	*	2	.C	js	0	*	*	2	.C	so
-Chromosome6	329275820	G	0	*	*	1	A	J	0	*	*	2	A.	Js	1	.	J
-Chromosome6	329275881	A	0	*	*	1	G	R	0	*	*	2	G.	Js	1	.	J
-Chromosome6	329443167	T	1	,-1g	J	1	,-1g	J	0	*	*	1	,-1g	J	1	,-1g	J
-Chromosome6	330065156	A	0	*	*	0	*	*	4	GGG.	ssss	2	GG	ss	3	GG.	ssV
-Chromosome6	330065197	C	0	*	*	0	*	*	4	,,,,	JJJJ	2	t,	JJ	3	.t,	oJJ
-Chromosome6	330146508	T	0	*	*	0	*	*	1	.-1A	J	1	.-1A	J	2	.-1A,	JA
-Chromosome6	330148047	C	0	*	*	1	.-4CAAG	5	0	*	*	1	.-4CAAG	5	1	.-4CAAG	5
-Chromosome6	330157521	C	2	.A	JJ	0	*	*	0	*	*	1	A	J	1	.	J
-Chromosome6	330157565	A	2	.C	JJ	0	*	*	0	*	*	1	C	J	1	.	J
-Chromosome6	330157644	C	2	t,	JA	0	*	*	0	*	*	1	,	F	1	t	J
-Chromosome6	330170206	A	1	.	J	0	*	*	3	C..	JJJ	0	*	*	4	..C.	JJJJ
-Chromosome6	330170269	A	1	.	s	0	*	*	3	..T	kss	0	*	*	4	.T..	soso
-Chromosome6	330170278	G	1	.	s	0	*	*	3	..T	Wss	0	*	*	4	.T.T	osss
-Chromosome6	330170302	A	1	.	s	0	*	*	3	..C	\ss	0	*	*	4	.C..	sVss
-Chromosome6	330170356	C	1	,	J	0	*	*	3	,,t	JJJ	0	*	*	4	t,,,	JJJJ
-Chromosome6	330384311	T	0	*	*	1	G	J	1	.	F	0	*	*	2	.G	JJ
-Chromosome6	330401519	A	0	*	*	0	*	*	1	,	F	1	,-1g	J	2	,-1g,	FJ
-Chromosome6	330594325	A	0	*	*	0	*	*	1	.	J	1	T	J	1	.-1T	J
-Chromosome6	330612901	G	1	,	J	1	a	J	0	*	*	0	*	*	2	,c	<J
-Chromosome6	330719831	C	0	*	*	0	*	*	1	,	F	1	t	G	3	,,t	JJG
-Chromosome6	330941444	A	0	*	*	1	G	s	1	.	A	0	*	*	2	.G	JJ
-Chromosome6	330941467	C	0	*	*	1	,-3ggg	J	1	.	o	0	*	*	2	.,-3ggg	sJ
-Chromosome6	330976374	G	0	*	*	0	*	*	1	A	J	2	A.	JJ	2	A.	JJ
-Chromosome6	330976393	C	0	*	*	0	*	*	2	T.	ss	2	T.	ss	2	T.	Ws
-Chromosome6	331044373	A	0	*	*	1	,-1t	J	1	,	J	1	.-1T	s	0	*	*
-Chromosome6	331122875	A	3	,,g	JFJ	1	t	J	5	,,t,,	JJJJJ	6	,,,,,,	JJJJJJ	4	,tg,	JJJJ
-Chromosome6	331259115	C	0	*	*	0	*	*	2	t,	JJ	1	,	J	1	t	J
-Chromosome6	331337214	G	1	.-3CGC	<	1	,-3cgc	J	1	.-3CGC	J	0	*	*	0	*	*
-Chromosome6	331337568	C	0	*	*	0	*	*	1	,-16agagagaggttgtgcg	<	1	,	H	1	,-2ag	J
-Chromosome6	331415541	G	2	,t	7J	1	,	J	0	*	*	1	t	F	0	*	*
-Chromosome6	331570447	G	2	A.	JF	2	..	Js	0	*	*	0	*	*	1	A	J
-Chromosome6	331570531	G	2	T.	AJ	2	T.	Js	1	.	s	0	*	*	1	T	J
-Chromosome6	331810294	C	0	*	*	2	G.	JJ	1	G	J	0	*	*	3	...	JJs
-Chromosome6	331810295	A	0	*	*	2	T.	JJ	1	T	F	0	*	*	3	T..	JJs
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-Chromosome6	338443637	A	1	T	F	2	..	FJ	0	*	*	3	.TT	s<J	0	*	*
-Chromosome6	338443638	G	1	A	F	2	..	JJ	0	*	*	3	.AA	oAJ	0	*	*
-Chromosome6	338443773	C	1	t	J	2	,,	JJ	0	*	*	2	,t	A7	0	*	*
-Chromosome6	338478534	A	1	,-7tactccg	5	0	*	*	1	.	R	1	,-7tactccg	5	0	*	*
-Chromosome6	338690117	A	0	*	*	1	G	o	2	.T	sf	2	.,	sF	0	*	*
-Chromosome6	338728323	A	0	*	*	0	*	*	1	,-5accat	7	1	,	J	1	,-5accat	7
-Chromosome6	338841745	C	1	,	F	2	tt	JF	0	*	*	0	*	*	2	,t	JJ
-Chromosome6	338877342	G	2	A.	JJ	1	A	J	1	.	s	0	*	*	0	*	*
-Chromosome6	338922353	G	1	A	J	1	.	J	0	*	*	0	*	*	2	,A	VF
-Chromosome6	338922403	A	1	G	J	1	.	J	0	*	*	0	*	*	2	,G	sJ
-Chromosome6	338922404	A	1	G	J	1	.	J	0	*	*	0	*	*	2	,G	s<
-Chromosome6	338922409	C	1	T	J	1	.	J	0	*	*	0	*	*	2	,T	sA
-Chromosome6	338922419	T	1	C	J	1	.	F	0	*	*	0	*	*	2	,C	sJ
-Chromosome6	338922458	C	1	T	J	1	.	F	0	*	*	0	*	*	2	,T	sF
-Chromosome6	338922468	T	1	C	J	1	.	J	0	*	*	0	*	*	2	,C	sF
-Chromosome6	339125585	A	1	G	J	0	*	*	3	...	JAJ	0	*	*	2	G.	FJ
-Chromosome6	339125610	C	1	T	J	0	*	*	2	T.	FJ	0	*	*	2	T.	FF
-Chromosome6	339125899	C	1	,+1t	D	0	*	*	3	,+1t,+1t,+1g	FJ7	0	*	*	2	,+1t,+1t	J?
-Chromosome6	339207688	T	3	,,c	JJJ	0	*	*	1	c	J	7	c,,cccc	AJJJJAJ	2	,c	JJ
-Chromosome6	339207753	C	1	g	F	0	*	*	0	*	*	3	,g,	FFF	1	,	<
-Chromosome6	339212206	G	1	,	J	0	*	*	1	t	J	2	,a	JJ	0	*	*
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-Chromosome6	339505953	A	1	c	J	2	C,	sJ	2	C,	sJ	0	*	*	4	,,,,	JJJJ
-Chromosome6	339584024	A	1	t	<	0	*	*	0	*	*	1	,	J	2	,t	JA
-Chromosome6	339597434	A	0	*	*	1	.	J	0	*	*	1	G	F	2	TG	MJ
-Chromosome6	339662065	A	0	*	*	0	*	*	2	.-1G.	Rs	1	.-1G	s	1	.-1G	s
-Chromosome6	339662097	T	0	*	*	0	*	*	3	cc.	FFF	1	c	J	1	a	J
-Chromosome6	339662135	G	0	*	*	0	*	*	2	,-1a.	<F	1	,-1a	J	1	,-1a	J
-Chromosome6	339682090	A	1	,	J	0	*	*	1	,-1g	J	0	*	*	1	,-1g	<
-Chromosome6	339783959	G	5	.AAAA	JJJJJ	2	.A	JJ	3	.A.	JFJ	4	A.AA	JJJJ	4	.AAA	JFJJ
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-Chromosome6	340003968	T	1	.-1C	J	0	*	*	1	.-1C	J	1	.-1C	J	1	.-1C	J
-Chromosome6	340050363	T	1	,+1c	J	0	*	*	4	,+1c,+1c,+1c,+1c	JJJJ	0	*	*	3	,+1c,+1c,+1c	JDJ
-Chromosome6	340186332	G	1	.-1T	J	0	*	*	1	.	J	0	*	*	2	.-1T.-1T	JJ
-Chromosome6	340419693	C	50	.-1T.-4TTTT.-2TT.-3TTT.-1T..-3TTT.-4TTTT...-3TTT..-3TTT..-3TTT.-2TT.-4TTTT.-3TTT.-3TTT.-2TT.-4TTTT.-3TTT...-2TT.-2TT.-3TTT..-3TTT..-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-2TT.-3TTT.-4TTTT.-1T.-3TTT.-3TTT.-2TT.-3TTT,-3ttt.-1T..-4TTTT.-3TTTt	ssJso\soaVsMsjofssssssWJoVo7okVooVsssojMosCssosss:	107	.-3TTT..-3TTT..-4TTTT.-2TT...+1T.-3TTT.-4TTTT..-3TTT.-2TT.-3TTT.-3TTT.-3TTT.-4TTTT.-3TTT.-3TTT.-3TTT.-5TTTTT.-4TTTT.-3TTT..-2TT..-3TTT.-3TTT..+1T.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-3TTT..-3TTT.-4TTTT.-3TTT.-2TT.-2TT.-3TTT.-3TTT..-3TTT..-4TTTT.-4TTTT...-4TTTT..-3TTT.-3TTT..-3TTT.-3TTT.-2TT.-4TTTT...-4TTTT.-3TTT..-1T....-3TTT..-3TTT.-5TTTTT.-3TTT.-3TTT.-4TTTT.-3TTT..-3TTT...-3TTT.-2TT,..-3TTT.-3TTT.-3TTT.-3TTT.-3TTT,.-1T.-1T.-3TTT.-1T.-3TTT.-3TTT.-3TTT,-3ttt.-3TTT.-1T.-3TTT.-3TTT.-3TTT.-3TTT	o`jVsVsWo`jskWsssssoesse`fVojMsfaef`jVsVossojsWsosssRkRRMCsM\sk\sosokHRsjJaeossjoVsaj`Vasoosfjjoossssjsssso	156	.-3TTT,-3ttt.-4TTTT.-4TTTT.-2TT.-3TTT.-3TTT.-1T.-3TTT..-7TTTTTTT..-3TTT..-3TTT.-3TTT..-3TTT....-3TTT.-3TTT..-3TTT...-3TTT.-2TT..-2TT..-3TTT.-3TTT..-3TTT.-3TTT.-3TTT.-3TTT.-4TTTT.-4TTTT.-3TTT..-3TTT.-3TTT..-3TTT.+1T..-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-2TT.-2TT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-2TT.-3TTT.+1T.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT...-1T..-3TTT.-3TTT..-3TTT.-3TTT.-3TTT.-4TTTT.+1T.-2TT.-3TTT.-3TTT..-3TTT..-3TTT.-3TTT.-3TTT..-3TTT.-2TT.-3TTT.-2TT.-1T.-2TT.-3TTT.-3TTT.-3TTT.-4TTTT.-2TT..-2TT.-3TTT.-3TTT.-3TTT..-3TTT.-5TTTTT..-3TTT.-3TTT..-3TTT.-3TTT..-4TTTT.-3TTT.-1T..-1T.-3TTT..-3TTT.-3TTT.-3TTT.-3TTT.-4TTTT.-3TTT.-4TTTT,-3ttt..-2TT.-3TTT.-3TTT......,-3ttt.-3TTT,-3ttt.-3TTT,.-3TTT.-4TTTT	osjjasRVsesVs<o\osfVfjsssJVVs9essR9sosVsfokVsfaVokosssooe>ssjjss\osVeoMkaoso9s\sVoe<CfssjsVMe`VsssjjsFessfsRkosafsooRskkeasVMeWfeoesjoosfssRVossoVseMsefoAsJ	173	.+1T..-3TTT.-3TTT..-3TTT.-4TTTT.-3TTT.-2TT.-3TTT.+1T.+1T..-4TTTT.-4TTTT.-3TTT..-3TTT..-3TTT.-3TTT.-3TTT..-1T.-4TTTT.-3TTT..-3TTT.-3TTT.-3TTT.-1T.-3TTT..-3TTT.-3TTT.-3TTT.-3TTT.-4TTTT.-3TTT.+1T.-3TTT.-4TTTT..-2TT.-3TTT.-3TTT.-3TTT...-3TTT.-3TTT..-3TTT..-3TTT.-3TTT.-3TTT..-3TTT.-3TTT..-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-3TTT.-1T.-3TTT.-2TT..-3TTT.-3TTT.-3TTT..-4TTTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-4TTTT.-4TTTT.-3TTT.-4TTTT..-3TTT..-4TTTT.-3TTT.-3TTT.-1T.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-3TTT.-3TTT..-3TTT.-3TTT.-5TTTTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-3TTT...-2TT.-3TTT.-2TT.-1T.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-2TT..-3TTT...-3TTT.-4TTTT.-3TTT.-3TTT..-3TTT.-3TTT.-3TTT.-2TT.-4TTTT..-1T..-3TTT.-3TTT.-4TTTT...-3TTT..-3TTT.-3TTT.-3TTT.,-1t..-3TTT..-3TTT.-3TTT.-3TTT.-3TTT,-3ttt.-3TTT..-3TTT....-3TTT.+1T,-4tttt.,	s\\jf\oRVjssoRssosjosJaFss>joseoVjoooosossojjeoMoo`e`JasssosCfjsssssofsesoofooRsoss`sssseosoosRsoFosjokWesssoVoojRssCs`jjfseoe9oRssjRVsejssssRssesR\oMosJsHskjoJs:sAsJooJooss	110	,-3ttt,.-3TTT..-4TTTT.-3TTT.-3TTT..-1T.-3TTT..+1T.-5TTTTT.-3TTT.-3TTT.-3TTT.-3TTT...-3TTT.-3TTT...-3TTT.-3TTT.-3TTT.-3TTT..-3TTT..-3TTT.-3TTT.-2TT.-3TTT.-3TTT..-2TT..-3TTT.-2TT..-4TTTT.-3TTT.-5TTTTT..-7TTTTTTT.-3TTT.-1T.-3TTT.-3TTT.-3TTT.+1T.-3TTT.-5TTTTT.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT..-1T.-3TTT.-3TTT.-3TTT....-4TTTT.-3TTT.-3TTT.-2TT....-3TTT.-3TTT.-1T..-4TTTT.-3TTT.-3TTT..-5TTTTT.-3TTT.-4TTTT.-3TTT.-3TTT.-3TTT...-1T.-1T.-3TTT.-3TTT.-2TT..-1T.-2TT..-3TTT..-1T.-3TTT.-3TTT.-3TTT.,-3ttt.-3TTT.-3TTT	ssoo`ssHsVCsseks\FsaooMsssskesss`jfRsaossjJsesskofFVfsaos\VVfsojsV\VRsssJojsjHjsssssssssVe9joJsjVsskssoesVsosa
-Chromosome6	340419708	T	53	.......................*....$..................,....,,	95879e75oo7o7o77577757`Q77757o77777=77759777`779s577>	106	................................................*...................................,......,.......,......	7s7s57so975s777775777557V7e77V97777e77s7577777R7\55sj5o77V7775o57s9jjj7o=57757o7ss77js77777`99797777797777	147	.,..........................................*.....................................................................................,.........,.,.,.,	775557797ss777j7jes77s7777s77R7777V557o77s79J777777776777777V7779777777Ws9s77s77659777R777j777?9777757s7777o7s77s77s579s67s77775757777ssssso7777A7:	167	...........................................................................................................................................$...........,.............,.,	7s77o7577799s557o7s67@?57j77796`777757975s7777Vs77s7777j777777j77977s777s5777775575s7o57797777j777s77577777o77fs7779777777s6oe7577s77775s9K775so7j777V97o77777s7ss=95ss	102	,,..............................................................*..................................,..	7s7s57797f957777s77s7777o7s7777777s575j7977=9757777s7e9777Vs5777Vso779s577o575777VV99=77o97s7s9777s777
-Chromosome6	340419709	A	51	......................*.....................,...,.,	osCojosooVojVo`sssfosjQsesssjjossMssVs\osVHssoos>sJ	107	...............................................$.*...................................,......,.......,.,.....	oMsMsossoojosesoessojsss`oVoe\ejsoaeVVjookooos\s\ojRsfooo\jVaofjjVss`aoosooossVjVoVCPk`oVosoVjooseossAjsssj	157	.,..........................................*.....................................................................................,.,........,.,,,.,,,,..,,,,	VosVossoesosoosfjojsessVVoVje`sssjVshoojkeojJessosess\oeksVsjssjVhWjossofjHsjsojkRoeosRjessssssWeosjssejsjjskssosesoV``joVjeosssoeAssVjeoojsfssj7AsAAAFs9JFJA	173	.........................$.......................................................................................................,...................,......,,,,.......,.,,,,,	oMfjs`VVjojjKoooj`_sHess`osoeV\sRssssjsoojs`s\ejeVs\sssjVsjosjssoojossssosHoossResseesesVsjooCsoeVsHssssjloVoMVjesaoossojMRo`ssVAjfsjsssjesskjV\oWssesoss\sAFAFossosossosJJAJ	112	,,...............................................................*.................................,.,,,,,,,,.,,	sVeojsosjaeo`sjRjosejjoeVjoksSsooVsejRoRsssookfssfosVfjjsRsVVssssVVosjaossVeVVssoR`fosVsoejjoosjsoosoJFAJFJ>:oA<
-Chromosome6	340503267	C	0	*	*	0	*	*	2	T,	JJ	4	,,,,	JAJJ	1	T	J
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-Chromosome6	343577469	C	2	,t	JJ	0	*	*	1	t	J	0	*	*	2	,,	JJ
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-Chromosome6	351677794	A	3	,,,	JJJ	6	.,,,tt	`JJFJJ	2	,t	J;	7	,,tt..T	JJJJ\os	4	.t,,	fJJJ
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-Chromosome6	351797023	C	1	a	J	2	.,	sJ	1	t	J	0	*	*	4	,,,t	JJJJ
-Chromosome6	352014222	C	1	.-1G	J	0	*	*	2	.-1G.-1G	<J	1	.-1G	J	0	*	*
-Chromosome6	352021263	G	0	*	*	1	.	A	3	.A.	JJJ	0	*	*	2	A.	AA
-Chromosome6	352129879	C	2	,,	JJ	4	aa,,	JAFJ	10	,,a,,,,,,,	JJ7JJJFFJJ	4	a,a,	JJJJ	6	,aa,,a	JJJJJJ
-Chromosome6	352235063	T	1	.	J	0	*	*	5	G.G..	JJJsk	0	*	*	2	G.	Js
-Chromosome6	352329904	A	0	*	*	2	.-1T.-1T	JJ	1	.-1T	J	0	*	*	1	.	F
-Chromosome6	352413756	C	0	*	*	2	.T	JJ	1	.	J	2	.T	JJ	0	*	*
-Chromosome6	352413792	T	0	*	*	2	.C	JJ	1	.	J	2	.C	JJ	0	*	*
-Chromosome6	352413880	C	0	*	*	1	.	j	1	A	J	3	A..	JJJ	0	*	*
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-Chromosome6	352431856	G	1	,	J	2	A.	ss	0	*	*	1	a	J	0	*	*
-Chromosome6	352533646	T	1	A	J	1	.	s	2	A.	JF	0	*	*	0	*	*
-Chromosome6	352671190	A	1	.-1G	J	0	*	*	0	*	*	1	.-1G	J	2	.-1G.-1G	JJ
-Chromosome6	352671252	G	1	A	F	0	*	*	0	*	*	1	.	J	2	.A	JJ
-Chromosome6	352697935	C	1	A	J	1	.	V	0	*	*	2	.T	AF	0	*	*
-Chromosome6	352712463	C	2	.T	JJ	0	*	*	1	.	o	0	*	*	1	A	I
-Chromosome6	352850743	G	0	*	*	0	*	*	1	A	J	1	.	J	2	A.	JJ
-Chromosome6	353161086	G	5	T..T.	JJJJs	5	T..T.	JJJJJ	14	T......T...TT.	JJJJJJJJJJJAJs	11	TT...TT....	aJs<JJAJJJJ	12	...T...T....	JFJJJFJJJJJJ
-Chromosome6	353161194	C	5	,a,,a	FJJJJ	5	.a,,a	s<FJJ	14	.a,,,,,,a,,,aa	oJJJJJJAJJJJJJ	11	.,a.a,,aa,,	sJFsJJJJAJJ	12	,,,a,,,a,,,,	JJJJJFJJJJJF
-Chromosome6	353161206	C	5	,,tt,	FJJJJ	5	.$,,,,	jJAJJ	14	.t,,,,,,,,,,,,	fJJJJFJFJJJFJJ	11	.,,.,,,ta,,	sFJoFJJJJJJ	12	,,,,,,,t,,,,	JJJJJAJJJJJA
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-Chromosome6	353227340	C	0	*	*	0	*	*	2	.t	sJ	1	t	J	2	,,	JF
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-Chromosome6	353535493	C	2	T.	Jo	0	*	*	1	T	J	0	*	*	1	.	j
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-Chromosome6	353535561	G	2	,-2ta,	JJ	0	*	*	1	,	J	0	*	*	1	,-2ta	J
-Chromosome6	353535568	G	2	,,-10tcttgtatac	JJ	0	*	*	1	,-10tcttgtatac	J	0	*	*	1	,	J
-Chromosome6	353535615	C	2	t,	JJ	0	*	*	1	,	J	0	*	*	1	t	J
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-Chromosome6	354219838	G	2	A.	so	0	*	*	0	*	*	1	.$	E	1	A	s
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-Chromosome6	354248907	C	1	G	A	0	*	*	1	.	J	0	*	*	2	.G	FF
-Chromosome6	354248959	C	1	A	<	0	*	*	1	.	J	0	*	*	2	.A	7J
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-Chromosome6	354514600	A	1	.-1T	@	0	*	*	0	*	*	1	.	J	1	.-1T	@
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-Chromosome6	354588747	A	4	.C.C	JJ7J	2	C.	JJ	3	C.C	J<J	2	C.	JJ	3	.C.	JJJ
-Chromosome6	354595416	C	0	*	*	0	*	*	2	G.	so	2	G.	jf	3	...	sjM
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-Chromosome7	8501745	A	1	.-10CCATGACAAC	;	1	.-10CCATGACAAC	H	1	.-10CCATGACAAC	H	0	*	*	0	*	*
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-Chromosome7	29090321	C	0	*	*	1	.-1T	s	1	,	J	0	*	*	1	,-1t	F
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-Chromosome7	29320882	A	0	*	*	1	g	J	3	,g,	JJJ	0	*	*	1	.	s
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-Chromosome7	29331941	T	2	c,	JJ	0	*	*	0	*	*	1	,	J	1	c	J
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-Chromosome7	29460667	A	3	g,,	JJJ	0	*	*	0	*	*	1	,	F	3	,,c	J<J
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-Chromosome7	29806572	T	0	*	*	2	.C	JJ	2	CC	JJ	0	*	*	1	.	J
-Chromosome7	29806577	A	0	*	*	2	T.	JJ	2	..	sJ	0	*	*	1	T	J
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-Chromosome7	31148720	C	1	T	A	1	.	J	0	*	*	0	*	*	2	.T	JJ
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-Chromosome7	36265448	G	1	A	J	1	.	J	0	*	*	0	*	*	2	.A	JF
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-Chromosome7	38607353	G	0	*	*	1	,	J	2	.a	sF	2	A,	JJ	0	*	*
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-Chromosome7	38645550	A	0	*	*	0	*	*	1	.-2TT	J	2	G.-2TT	FJ	2	.-2TT.-2TT	JJ
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-Chromosome7	60284261	G	1	.-5GAGAA	6	1	.-5GAGAA	Q	0	*	*	1	.	o	0	*	*
-Chromosome7	60285770	G	2	t,	JJ	3	.Tt	ssJ	0	*	*	0	*	*	2	,,	FJ
-Chromosome7	60285778	A	2	g,	>7	2	.G	RF	0	*	*	0	*	*	1	,	J
-Chromosome7	60285829	T	2	c,	FF	3	cc,	JJJ	0	*	*	0	*	*	1	,	J
-Chromosome7	60285832	T	2	a,	FJ	3	aa,	JJJ	0	*	*	0	*	*	1	,	J
-Chromosome7	60311329	T	1	,	J	0	*	*	2	,c	JJ	0	*	*	1	c	J
-Chromosome7	60398289	G	2	CA	AJ	0	*	*	0	*	*	2	A.	FJ	1	a	J
-Chromosome7	60468541	G	1	.	F	0	*	*	1	A	J	3	..A	JJs	0	*	*
-Chromosome7	60487432	A	4	...G	JJFF	1	.	J	1	G	J	0	*	*	3	..G	JJJ
-Chromosome7	60487436	G	4	...C	JJFJ	1	.	J	1	C	J	0	*	*	3	..C	FJJ
-Chromosome7	60487440	C	3	..A	FFJ	1	.	J	1	A	J	0	*	*	3	..A	AJJ
-Chromosome7	60487459	G	4	.$..T	EFJA	1	.	J	1	T	J	0	*	*	3	..T	JJJ
-Chromosome7	60489473	A	1	G	J	1	.	F	0	*	*	2	G.	Js	0	*	*
-Chromosome7	60489490	C	1	G	J	1	.	J	0	*	*	2	G.	Js	0	*	*
-Chromosome7	60489497	C	1	.	J	1	T	J	0	*	*	2	T.	Js	0	*	*
-Chromosome7	60558843	C	2	T.	JJ	0	*	*	2	..	JJ	0	*	*	1	T	J
-Chromosome7	60558875	T	2	A.	JJ	0	*	*	2	..	JA	0	*	*	1	A	J
-Chromosome7	60558894	C	2	T.	FJ	0	*	*	2	..	JJ	0	*	*	1	T	J
-Chromosome7	60715229	T	0	*	*	0	*	*	2	.C	JF	1	.	J	1	C	A
-Chromosome7	60715246	G	0	*	*	0	*	*	2	.T	FF	1	.	J	1	T	A
-Chromosome7	60715352	A	0	*	*	0	*	*	2	t,	JJ	1	t	J	1	,	A
-Chromosome7	60715418	T	0	*	*	0	*	*	2	c,	JJ	1	c	J	1	,	J
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-Chromosome7	60922478	C	0	*	*	1	T	o	2	T.	FF	0	*	*	1	.	s
-Chromosome7	60922482	C	0	*	*	1	T	o	2	T.	FA	0	*	*	1	.	s
-Chromosome7	60932252	C	0	*	*	1	,+1g	H	0	*	*	2	,t	JJ	2	.+1G,+1g	HH
-Chromosome7	60933892	T	0	*	*	1	.-1G	i	0	*	*	1	.	s	1	.-1G	U
-Chromosome7	60933897	C	0	*	*	1	.-1A	s	0	*	*	1	.	s	1	.-1A	f
-Chromosome7	60934898	A	0	*	*	1	.	o	1	.-7TCTAGAG	9	0	*	*	1	.-7TCTAGAG	9
-Chromosome7	60934940	C	0	*	*	1	.	j	2	T.	ss	0	*	*	1	T	`
-Chromosome7	60935022	T	0	*	*	1	,	J	2	.c	sJ	0	*	*	1	c	J
-Chromosome7	60959280	C	1	.	s	0	*	*	2	.T	ss	3	..T	sos	0	*	*
-Chromosome7	60959323	T	1	.	s	0	*	*	2	Cc	`J	3	..C	oo`	0	*	*
-Chromosome7	60959405	A	1	,	J	0	*	*	1	g	J	3	,gg	JJJ	0	*	*
-Chromosome7	61035869	T	0	*	*	1	,-1c	J	1	,-1c	J	1	,-1c	J	1	,-1c	J
-Chromosome7	61187439	A	2	gg	JJ	0	*	*	2	g.	A^	1	.	<	0	*	*
-Chromosome7	61187445	A	2	tt	JJ	0	*	*	2	t.	Js	1	.	<	0	*	*
-Chromosome7	61187447	G	3	aa,	AJA	0	*	*	2	a.	Js	1	.	F	0	*	*
-Chromosome7	61187448	A	2	gg	FJ	0	*	*	2	g.	Js	1	.	7	0	*	*
-Chromosome7	61187475	A	3	ttg	FJ<	0	*	*	2	tG	Js	1	G	A	0	*	*
-Chromosome7	61187477	G	2	aa	7J	0	*	*	2	a.	Js	1	.	7	0	*	*
-Chromosome7	61198208	C	0	*	*	0	*	*	1	A	J	1	.	J	3	..A	JJJ
-Chromosome7	61198320	C	0	*	*	0	*	*	1	t	J	1	,	J	3	t,t	JJJ
-Chromosome7	61198385	T	0	*	*	0	*	*	1	,	J	1	c	F	2	c,	JJ
-Chromosome7	61211642	G	0	*	*	0	*	*	2	.C	JJ	1	.	J	3	CAA	JJF
-Chromosome7	61211741	C	0	*	*	0	*	*	2	.T	sJ	2	.T	Js	3	...	JAF
-Chromosome7	61217709	A	1	,-4cgcg	J	1	.-4CGCG	R	0	*	*	0	*	*	1	.-4CGCG	o
-Chromosome7	61425181	A	1	.	J	1	.-3TAC	5	1	.-3TAC	9	0	*	*	0	*	*
-Chromosome7	61541673	T	0	*	*	2	c,	JJ	2	,,	JJ	1	c	J	0	*	*
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-Chromosome7	61544422	G	2	TA	JJ	0	*	*	0	*	*	1	T	J	1	.	J
-Chromosome7	61544427	G	2	A.	JJ	0	*	*	0	*	*	1	A	J	1	.	J
-Chromosome7	61544460	C	2	T.	JJ	0	*	*	0	*	*	1	T	J	1	.	J
-Chromosome7	61544523	C	2	T.	JJ	0	*	*	0	*	*	1	T	J	1	.	F
-Chromosome7	61544665	T	2	,c	JJ	0	*	*	0	*	*	1	c	J	1	,	J
-Chromosome7	61582251	T	2	GA	7J	1	G	J	0	*	*	0	*	*	1	A	F
-Chromosome7	61950904	C	0	*	*	0	*	*	3	.T.	FAJ	3	T..	JJJ	1	.	J
-Chromosome7	62064146	C	0	*	*	1	.-1A	F	0	*	*	1	.-1A	F	1	.-1A	F
-Chromosome7	62084313	G	1	.	J	0	*	*	3	TT.	<JJ	1	A	J	0	*	*
-Chromosome7	62118911	C	0	*	*	2	.t	oF	1	,	F	1	T	j	0	*	*
-Chromosome7	62118989	C	0	*	*	2	t,	FJ	1	t	J	1	.	o	0	*	*
-Chromosome7	62124073	G	1	.-6TTATTT	s	0	*	*	1	.	s	0	*	*	2	.-6TTATTT.-6TTATTT	sj
-Chromosome7	62124109	A	1	.-1G	i	0	*	*	1	,-1g	E	0	*	*	2	,-1g,-1g	EE
-Chromosome7	62126051	T	0	*	*	1	c	J	1	,	J	0	*	*	2	C,	sJ
-Chromosome7	62190880	C	0	*	*	1	T	s	0	*	*	3	,t,	JJJ	1	.	s
-Chromosome7	62197790	G	1	,	J	0	*	*	1	A	<	0	*	*	3	aa,	FJJ
-Chromosome7	62197792	G	1	a	J	0	*	*	1	.	I	0	*	*	3	,,a	JJJ
-Chromosome7	62197794	C	1	t	J	0	*	*	1	G	A	0	*	*	3	ggt	JJF
-Chromosome7	62197809	T	1	,	J	0	*	*	1	.-1C	J	0	*	*	3	,-1c,-1c,	JJJ
-Chromosome7	62197818	C	1	,	J	0	*	*	1	G	7	0	*	*	3	gg,	JJJ
-Chromosome7	62197891	C	1	t	J	0	*	*	1	.	\	0	*	*	3	gg,	JJJ
-Chromosome7	62221283	T	3	,ac	FJ7	5	,,a,,	FJJJ<	1	,	J	7	ac,,,ca	JJJJE7J	2	cg	AJ
-Chromosome7	62222733	G	2	,a	FJ	1	a	7	0	*	*	3	.aa	sJ7	0	*	*
-Chromosome7	62222750	T	1	,	J	1	c	J	0	*	*	3	Cc,	sJF	0	*	*
-Chromosome7	62223511	T	3	,.,	FAJ	2	,c	JJ	1	c	<	2	c.	FJ	2	.c	J@
-Chromosome7	62232969	T	2	,g	J7	0	*	*	1	g	A	1	a	F	0	*	*
-Chromosome7	62232976	C	2	t,	JA	0	*	*	2	aa	F<	1	,	J	0	*	*
-Chromosome7	62420808	T	0	*	*	0	*	*	1	,	J	1	.-1C	s	1	.-1C	V
-Chromosome7	62500065	G	0	*	*	1	A	s	2	a,	JJ	0	*	*	1	,	J
-Chromosome7	62500074	C	0	*	*	1	G	o	2	g,	FJ	0	*	*	1	,	J
-Chromosome7	62500085	T	0	*	*	1	C	s	2	c,	JJ	0	*	*	1	,	J
-Chromosome7	62500089	A	0	*	*	1	G	o	2	g,	JJ	0	*	*	1	,	F
-Chromosome7	62500098	T	0	*	*	1	G	e	2	g,	FJ	0	*	*	1	,	J
-Chromosome7	62500105	C	0	*	*	1	T	j	2	t,	JJ	0	*	*	1	,	F
-Chromosome7	62500116	A	0	*	*	1	T	s	2	t,	JJ	0	*	*	1	,	J
-Chromosome7	62500123	A	0	*	*	1	G	O	2	g,	FJ	0	*	*	1	,	J
-Chromosome7	62500163	G	0	*	*	1	a	J	2	a,	FJ	0	*	*	1	,	J
-Chromosome7	62752526	G	3	c,,	JJF	4	,,,,	JJFJ	4	,,c,	JFJJ	2	cc	JJ	4	,,,c	JJJJ
-Chromosome7	62986765	A	0	*	*	0	*	*	2	.-1T.	=F	2	..	FF	1	.-1T	=
-Chromosome7	62986778	C	0	*	*	0	*	*	2	.G	JJ	2	GG	JJ	1	.	J
-Chromosome7	62986791	G	0	*	*	0	*	*	2	.T	JZ	2	TT	ZZ	1	.	J
-Chromosome7	62986823	C	0	*	*	0	*	*	2	AT	Js	2	TT	ss	1	A	J
-Chromosome7	62986871	G	0	*	*	0	*	*	2	.A	ss	2	AA	os	1	.	`
-Chromosome7	62986886	C	0	*	*	0	*	*	2	G.	ss	2	..	ss	1	G	e
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-Chromosome7	63078621	T	1	.-1C	J	0	*	*	2	..-1C	JJ	0	*	*	3	...	JAJ
-Chromosome7	63078636	C	1	T	J	0	*	*	2	.T	JJ	0	*	*	3	...	AFF
-Chromosome7	63078645	C	1	A	J	0	*	*	2	.A	JJ	0	*	*	3	...	AAJ
-Chromosome7	63078907	A	1	g	J	0	*	*	2	,g	FJ	0	*	*	1	,	J
-Chromosome7	63078908	A	1	t	J	0	*	*	2	,t	JJ	0	*	*	2	,,	FJ
-Chromosome7	63078910	G	1	t	J	0	*	*	2	,t	JJ	0	*	*	2	,,	JJ
-Chromosome7	63119079	G	1	.	s	0	*	*	0	*	*	1	,-2ac	7	1	,-2ac	J
-Chromosome7	63152336	G	0	*	*	1	.	s	2	,-2tt,-2tt	HJ	1	.-2TT	s	0	*	*
-Chromosome7	63152352	G	0	*	*	1	.-1A	s	1	,-1a	J	1	.-1A	s	0	*	*
-Chromosome7	63211591	A	2	g,	JJ	0	*	*	1	.	s	2	.t	sF	1	g	J
-Chromosome7	63342428	C	6	.T....	JJJFJJ	3	.TT	AFF	4	T...	JJJJ	1	.	J	4	TT.T	A<JJ
-Chromosome7	63660492	C	1	.	J	1	T	J	0	*	*	2	.t	Fs	0	*	*
-Chromosome7	63812982	C	0	*	*	1	T	J	2	..	JJ	0	*	*	2	.T	JJ
-Chromosome7	63813010	T	0	*	*	1	G	J	2	..	FF	0	*	*	2	.G	JJ
-Chromosome7	63813011	A	0	*	*	1	G	J	2	.C	JJ	0	*	*	2	CG	JJ
-Chromosome7	63813019	C	0	*	*	1	T	J	2	..	JJ	0	*	*	2	.T	JJ
-Chromosome7	63928209	A	0	*	*	0	*	*	1	.-1T	J	2	.-1T.	FF	1	.	J
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-Chromosome7	63928266	T	0	*	*	0	*	*	1	.	s	2	.G	Vs	1	G	A
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-Chromosome7	63928357	A	0	*	*	0	*	*	1	,	J	2	,,-2tt	JF	1	g	J
-Chromosome7	63935323	G	0	*	*	1	.	s	1	a	J	0	*	*	3	a,,	FJJ
-Chromosome7	63935342	C	0	*	*	1	.	s	1	t	F	0	*	*	3	t,,	JJJ
-Chromosome7	63935413	T	0	*	*	1	,	J	1	g	J	0	*	*	3	gg,	JJF
-Chromosome7	63979354	T	0	*	*	2	g,	JJ	1	g	J	1	,	J	0	*	*
-Chromosome7	64034080	G	1	.	J	1	.-4TATT	F	2	..-4TATT	JJ	0	*	*	0	*	*
-Chromosome7	64335797	C	0	*	*	0	*	*	3	,,t	sss	1	t	s	2	,,	ss
-Chromosome7	64369902	G	1	.-1A	s	2	.-1A.-1A	ss	0	*	*	1	.-1A	s	1	.-1A	o
-Chromosome7	64448134	G	6	.A....	F<JJAJ	3	AA.	J<J	7	...AAAA	7JJJJAJ	1	.	J	4	.AA.	JJJJ
-Chromosome7	64467272	G	0	*	*	2	.A	JJ	0	*	*	1	A	J	1	.	J
-Chromosome7	64467476	C	0	*	*	2	t,	JJ	0	*	*	1	t	J	1	,	J
-Chromosome7	64536761	T	0	*	*	2	,c	JF	2	c,	JJ	2	,c	JJ	7	,,,,cc,	JJAJAJJ
-Chromosome7	64785298	G	0	*	*	2	.+1C.+1C	JJ	2	.-1C.+1C	FJ	0	*	*	2	..	<J
-Chromosome7	64855885	G	1	,	J	2	.$,-1a	FJ	0	*	*	0	*	*	1	,-1a	J
-Chromosome7	64911592	A	0	*	*	1	.-10AATCGTCCAC	K	0	*	*	1	.	J	2	.-10AATCGTCCAC.-10AATCGTCCAC	56
-Chromosome7	65148424	T	0	*	*	1	C	J	0	*	*	1	.	o	2	C.	JF
-Chromosome7	65190990	G	1	a	J	0	*	*	1	.	s	2	,a	JF	0	*	*
-Chromosome7	65312367	A	3	G.G	JJJ	2	.G	JJ	1	G	J	1	T	J	0	*	*
-Chromosome7	65529862	T	0	*	*	2	.C	sj	2	.C	oo	2	.C	ks	1	.	o
-Chromosome7	65529947	A	0	*	*	2	T,	V7	2	,t	JJ	0	*	*	1	,	J
-Chromosome7	65529948	G	0	*	*	2	T,	oF	2	,t	JJ	0	*	*	1	,	A
-Chromosome7	65636974	T	2	G.	JJ	0	*	*	1	G	J	0	*	*	2	..	J7
-Chromosome7	65636984	G	2	.A	JA	0	*	*	1	C	J	0	*	*	2	..	FF
-Chromosome7	65660973	C	1	T	J	2	.T	JJ	1	.	F	0	*	*	0	*	*
-Chromosome7	65671610	T	3	,-4ccgg,-4ccgg,-4ccgg	JFJ	0	*	*	0	*	*	1	,-4ccgg	<	1	,	A
-Chromosome7	65682391	G	2	.A	JF	1	T	J	1	.	F	0	*	*	3	A..	JJJ
-Chromosome7	65763552	C	0	*	*	1	,	J	2	t,	JJ	2	,t	FJ	0	*	*
-Chromosome7	65821924	G	0	*	*	2	..	JJ	11	.....A.....	J<JJFJJJJJJ	6	...T..	JJJJJJ	8	.A...A..	JJJAJJJJ
-Chromosome7	66029077	A	0	*	*	1	.-10CCGGAGGTCC	J	1	.	J	1	.-10CCGGAGGTCC	J	0	*	*
-Chromosome7	66242657	A	1	.	s	1	T	s	0	*	*	3	..T	ess	0	*	*
-Chromosome7	66242665	A	1	,	J	1	G	s	0	*	*	3	..G	sss	0	*	*
-Chromosome7	66242668	G	1	,	J	1	A	s	0	*	*	3	..A	sss	0	*	*
-Chromosome7	66242675	T	1	,	J	1	C	s	0	*	*	3	..C	sss	0	*	*
-Chromosome7	66242701	G	1	,	J	1	C	s	0	*	*	3	,.C	Jss	0	*	*
-Chromosome7	66343611	A	0	*	*	0	*	*	2	g,	JF	2	,g	JJ	1	,	J
-Chromosome7	66343640	T	0	*	*	0	*	*	2	a,	<J	2	,g	JJ	1	,	J
-Chromosome7	66592736	G	1	.-1A	J	2	..-1A	AF	0	*	*	0	*	*	1	.	F
-Chromosome7	66592781	C	1	.	J	2	GT	\J	0	*	*	0	*	*	1	G	o
-Chromosome7	66592784	A	1	.	J	2	G.	9J	0	*	*	0	*	*	1	G	s
-Chromosome7	66592799	T	1	.	J	2	G.	VJ	0	*	*	0	*	*	1	G	o
-Chromosome7	66592824	G	1	.	J	2	.a	JJ	0	*	*	0	*	*	1	A	s
-Chromosome7	66592858	A	1	.	J	2	.t	JJ	0	*	*	0	*	*	1	T	j
-Chromosome7	66599696	C	1	.	J	2	T.	Js	2	T.	Js	0	*	*	0	*	*
-Chromosome7	66599750	G	1	,	7	2	,a	JJ	2	.a	sJ	0	*	*	0	*	*
-Chromosome7	66865436	G	0	*	*	1	A	k	2	.,	os	0	*	*	2	A.	ss
-Chromosome7	66865503	C	0	*	*	1	.$	T	2	T,	js	0	*	*	2	T.	ss
-Chromosome7	67536606	A	4	....	JJJJ	4	.GG.	JJJJ	4	.G..	JJJJ	4	.GGG	JJJJ	7	...G.G.	JJJFJJJ
-Chromosome7	67666083	T	0	*	*	1	,	J	1	,-2aa	J	0	*	*	1	,-2aa	J
-Chromosome7	67686412	C	0	*	*	1	.	j	0	*	*	2	A.	os	1	.-1A	s
-Chromosome7	67801083	G	1	,	J	1	a	A	0	*	*	3	,a,	AJF	0	*	*
-Chromosome7	67995487	A	3	,cc	F<J	0	*	*	2	.c	oA	0	*	*	1	c	J
-Chromosome7	68014365	A	0	*	*	0	*	*	2	G.	JJ	2	..	JJ	1	G	J
-Chromosome7	68422478	C	0	*	*	0	*	*	1	t	<	2	,t	JJ	2	,t	AJ
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-Chromosome7	77120724	G	32	...........................A....	FJJJJJJJFJJJJJJJJJFJJJJFJJJJJJJJ	28	.................-2AT...........	JJJAJJJJJJJJJJFJFJJJJJJJJFJJ	52	.......................-2AT.............................	FJJAJJJJJJFJJJJFJJAJJJJJJJAJJJJJJJJJJJJJFJJJFAJA7JJJ	27	.........................T.	FJJJJJ7JA<JJJJJJJJJJJJJFJJJ	51	...................................................	7FFJJJJJJJJFFJJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJ
-Chromosome7	77120817	C	36	....................................	JJJJJFJJJJJJJJJJJFJ<JJJ<JFJJJ<JJjJsJ	36	..............................T.....	JJsJJJJJJJjJJJJJsFJFFFsJJJFJJJJJfFFA	56	......A.........A.......................................	JFFJJ7JoA7FJJJJFFJAJ7oJJJJJJJJJJJJJJJJJJ7JJ7FF7JAJsJJJsJ	30	....A..T......................	J<sJFsJFJJJJJJJJJJJJJJJJJJJJJJ	53	..A......T..................................A........	FFFJJJJJJFAJJJJJAJJJJJFJJJJJJAJJJJJJJJJJJJJJJJFJJJs`s
-Chromosome7	77120836	T	35	..A....................A...........	JJJJJFAJJJJJFJJJJFJFFF7JFJ<FJJJ`FsJ	34	.......A..............A....A......	Js<VAF<6sFJJFsAJAJAsoJ8JFJJAojJVsn	56	.A......................A...............................	J6JJJFFoAJJJFJJ7JJ7J7oJFNJAJJJJJJJFJJJJJJJ<FJFJFJjJFJssF	30	AA....A.....................AA	JoJFoFFFJJJJJJJJJJFJFFFn<JFAJJ	52	.........................AA.........................	AF<JJJJ7AAJJA<JJJJJJJ7JFJJJJ7JJJFJJJAJFJJJFJJJJJFsVs
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-Chromosome7	79432316	T	1	.	o	0	*	*	2	CC	ss	3	.CC	sss	0	*	*
-Chromosome7	79432332	C	1	,	J	0	*	*	2	.t	sJ	3	TT,	skJ	0	*	*
-Chromosome7	79466315	G	1	,	J	0	*	*	1	A	s	2	A.	os	0	*	*
-Chromosome7	79651446	G	1	,	J	2	A.	ek	2	.A	Jo	1	A	J	0	*	*
-Chromosome7	79696960	C	1	A	7	1	.	F	0	*	*	0	*	*	2	A.	FF
-Chromosome7	79696979	G	1	C	F	1	.	J	0	*	*	0	*	*	2	C.	JF
-Chromosome7	79697254	C	1	t	F	1	,	J	0	*	*	0	*	*	2	t,	AJ
-Chromosome7	79713664	G	0	*	*	0	*	*	2	a,	JJ	1	,	J	1	a	J
-Chromosome7	79736109	C	0	*	*	1	.	s	0	*	*	2	aa	JA	2	,a	J<
-Chromosome7	79782676	G	2	.a	JJ	1	t	A	0	*	*	1	,	J	1	a	F
-Chromosome7	79782976	G	10	aaa,aa,a,,	FJJJJJJJJJ	3	,,,	JJJ	5	,aaaa	J<JJJ	7	,a,a,aa	JFJJJJJ	5	,aa,a	JJJJ<
-Chromosome7	79783820	C	1	T	J	3	..t	jsF	0	*	*	2	..	sJ	0	*	*
-Chromosome7	79886377	A	0	*	*	0	*	*	2	,-6tcgagg,-6tcgagg	;;	1	,-6tcgagg	H	1	,-6tcgagg	J
-Chromosome7	79911907	T	0	*	*	2	..	Js	0	*	*	2	.C	JJ	1	C	J
-Chromosome7	79947998	G	0	*	*	1	,-1a	s	1	,-1a	J	0	*	*	1	,-1a	J
-Chromosome7	79971557	A	1	,-6gggggt	7	1	,-6gggggt	J	0	*	*	0	*	*	1	,	<
-Chromosome7	80085520	T	1	a	o	0	*	*	0	*	*	2	..	ss	2	.A	ss
-Chromosome7	80085524	C	1	t	s	0	*	*	0	*	*	2	..	ss	2	.T	ss
-Chromosome7	80085541	G	1	a	s	0	*	*	0	*	*	2	..	ss	2	.A	ss
-Chromosome7	80085611	G	1	,	j	0	*	*	0	*	*	2	aa	FF	2	a,	FF
-Chromosome7	80163092	T	2	g,	JJ	2	g,	JJ	4	g,,g	JFJ<	1	g	J	3	,,,	JJF
-Chromosome7	80238644	C	0	*	*	1	.-1G	J	2	.-1G.-1G	JJ	0	*	*	2	.-1G.-1G	JJ
-Chromosome7	80264144	C	0	*	*	1	,-1a	J	1	,-1a	J	0	*	*	3	,-1a,-1a,	JJJ
-Chromosome7	80448170	C	0	*	*	1	.-4AGAA	o	1	.-4AGAA	s	1	.-4AGAA	s	0	*	*
-Chromosome7	80496382	A	1	.-1G	J	0	*	*	1	.-1G	J	0	*	*	1	.-1G	J
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-Chromosome7	80624991	C	0	*	*	0	*	*	3	.,t	aJJ	4	,t,,	JJJA	3	,,,	FJJ
-Chromosome7	80625012	T	0	*	*	0	*	*	1	,	J	3	,a,	AJJ	3	,a,	JJJ
-Chromosome7	80753988	T	0	*	*	0	*	*	1	.-1G	A	1	.	F	1	C	J
-Chromosome7	81155312	C	1	G	J	1	.	J	2	G.	JJ	0	*	*	0	*	*
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-Chromosome7	81155387	T	1	C	A	1	.	J	2	C.	JJ	0	*	*	0	*	*
-Chromosome7	81155576	T	1	g	J	1	,	J	2	,g	JJ	0	*	*	0	*	*
-Chromosome7	81155606	A	1	g	J	1	,	J	2	,g	JJ	0	*	*	0	*	*
-Chromosome7	81262163	A	0	*	*	1	G	s	0	*	*	1	.	H	2	T.	Js
-Chromosome7	81262184	A	0	*	*	2	GG	As	0	*	*	1	.	\	2	G.	Js
-Chromosome7	81262187	G	0	*	*	2	C.	Fs	0	*	*	1	.	R	2	C.	Fs
-Chromosome7	81262211	T	0	*	*	2	..	7s	0	*	*	1	A	V	2	.A	Fs
-Chromosome7	81294508	C	0	*	*	0	*	*	2	..	JJ	1	T	s	2	T.	JJ
-Chromosome7	81294566	C	0	*	*	0	*	*	2	.T	JJ	1	.	s	2	.T	JA
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-Chromosome7	81304323	C	2	AA	JJ	2	.A	JJ	0	*	*	0	*	*	2	A.	JJ
-Chromosome7	81374230	T	4	,-9ttgagccga,cc	5JFF	1	c	J	7	,,c,c,c	JJJJJJJ	4	,cc,	JJFJ	7	,cc,c,c	JJJJJJJ
-Chromosome7	81943988	T	1	,	=	1	,-4gatc	;	1	,-4gatc	;	0	*	*	2	,-4gatc,-4gatc	;;
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-Chromosome7	81950975	T	6	,,,,c,	JJJJJJ	2	,c	JJ	4	,,,,	JJJJ	0	*	*	3	g,,	J<J
-Chromosome7	81950984	C	6	,,,,g,	JJJJJJ	2	,g	JJ	4	t,,,	FJJJ	0	*	*	3	,,,	JFJ
-Chromosome7	81950994	C	6	,,,,aa	JJJJJJ	2	,a	JJ	3	,aa	JJJ	0	*	*	3	,,a	JFJ
-Chromosome7	81951049	C	6	,,,,gg	JJJJJJ	2	,g	JJ	3	,g,	JJJ	0	*	*	3	,,,	JJJ
-Chromosome7	81975982	G	1	.-2AA	o	0	*	*	1	.	J	1	.-2AA	F	0	*	*
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-Chromosome7	82195742	A	1	,	s	1	.-2TT	s	0	*	*	1	.-1T	J	0	*	*
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-Chromosome7	82216337	T	2	c,	JJ	0	*	*	0	*	*	1	,	J	3	ccc	FJJ
-Chromosome7	82216546	T	0	*	*	3	C..	JFJ	1	.	J	4	.CC.	JJJJ	0	*	*
-Chromosome7	82216681	T	0	*	*	3	,,,	JAJ	1	a	J	4	a,,a	JJJJ	0	*	*
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-Chromosome7	82469076	T	0	*	*	1	C	A	0	*	*	2	..	<F	2	C.	JJ
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-Chromosome7	82503585	T	0	*	*	1	*	J	2	.*	JJ	0	*	*	1	.	W
-Chromosome7	82503586	C	0	*	*	1	*	J	2	.*	JJ	0	*	*	1	.	W
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-Chromosome7	82503588	A	0	*	*	1	*	J	2	.*	JJ	0	*	*	1	.	j
-Chromosome7	82562258	G	1	,	J	0	*	*	0	*	*	2	a,	JF	3	a,,	AJJ
-Chromosome7	82587523	G	2	t,	AF	1	t	J	0	*	*	0	*	*	1	,	A
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-Chromosome7	82998852	T	0	*	*	2	G.	JF	3	G..	FJJ	1	.	J	0	*	*
-Chromosome7	82999206	C	0	*	*	2	g,	JJ	3	g,,	JJF	2	,,	AJ	0	*	*
-Chromosome7	83398128	T	1	A	F	0	*	*	7	..A.A.A	JJJJJFJ	2	A.	JJ	2	..	JF
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-Chromosome7	83457907	C	2	AA	FA	2	.A	FJ	0	*	*	1	.	J	0	*	*
-Chromosome7	83558612	T	1	,-5ggaga	J	0	*	*	2	,-5ggaga,	@J	0	*	*	1	.	s
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-Chromosome7	83984199	G	0	*	*	0	*	*	1	c	J	1	,	s	2	c,	JJ
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-Chromosome7	84068331	C	1	,-4tata	J	0	*	*	1	,	J	0	*	*	1	,-4tata	J
-Chromosome7	84083202	A	0	*	*	0	*	*	1	,	J	1	g	J	2	.g	sJ
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-Chromosome7	84590932	G	0	*	*	1	,-2gt	8	1	t	s	1	.-2GT	O	1	.-2GT	O
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-Chromosome7	84664906	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
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-Chromosome7	84739935	A	2	,,	J<	5	g,g,,	J<JJJ	1	g	F	0	*	*	4	,gg,	FJJF
-Chromosome7	84751588	C	0	*	*	4	T...	JoJs	5	t..T.	kFFJJ	0	*	*	1	.	J
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-Chromosome7	85573258	G	0	*	*	1	.-8TAATGAGC	5	0	*	*	1	.	J	1	.-8TAATGAGC	6
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-Chromosome7	85757385	C	1	,-2ca	8	1	,-2ca	;	0	*	*	0	*	*	1	,-2ca	;
-Chromosome7	85805365	G	0	*	*	2	.A	JJ	2	.A	JA	3	...	JJJ	0	*	*
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-Chromosome7	86249912	T	1	,	J	0	*	*	2	,c	JJ	0	*	*	1	c	F
-Chromosome7	86297902	C	0	*	*	0	*	*	2	A.	5F	1	A	J	2	A.	5A
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-Chromosome7	86315945	T	0	*	*	1	C	F	0	*	*	1	.	J	2	.C	FJ
-Chromosome7	86469893	A	2	.C	JJ	1	C	J	2	C.	JJ	1	.	J	2	C.	JJ
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-Chromosome7	87068067	G	3	.CC	JJJ	1	.	J	1	C	<	0	*	*	0	*	*
-Chromosome7	87068135	A	3	G..	Joo	1	.	s	1	G	A	0	*	*	0	*	*
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-Chromosome7	87151024	G	2	,t	JJ	0	*	*	0	*	*	1	,	J	1	t	7
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-Chromosome7	87265868	A	0	*	*	1	.-3TGT	G	0	*	*	1	.	J	1	T	J
-Chromosome7	87390172	C	0	*	*	1	.-1G	J	1	.	7	0	*	*	1	.-1G	J
-Chromosome7	87676930	G	0	*	*	0	*	*	1	.	d	1	,-10tgagaacttc	;	1	,-10tgagaacttc	;
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-Chromosome7	87863152	T	0	*	*	0	*	*	2	.-1C.-1C	JJ	1	.-1C	J	1	.-1C	J
-Chromosome7	87863406	T	0	*	*	0	*	*	2	a,	J7	1	a	J	1	,	A
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-Chromosome7	88230410	C	2	A.	JJ	0	*	*	0	*	*	2	.A	JJ	2	..	JJ
-Chromosome7	88230676	C	2	t,	JF	0	*	*	0	*	*	2	,t	AJ	2	,,	AJ
-Chromosome7	88285883	G	1	.	F	0	*	*	0	*	*	1	T	F	2	A.	JJ
-Chromosome7	88303349	C	2	,-4atcg,-4atcg	<<	1	,-4atcg	<	0	*	*	0	*	*	1	,-4atcg	<
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-Chromosome7	88655128	A	0	*	*	0	*	*	1	.-2CC	J	1	.-2CC	J	2	.-2CC.-1C	JJ
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-Chromosome7	88680130	G	0	*	*	1	.	k	0	*	*	2	,.-5CTCGC	F<	1	.-5CTCGC	H
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-Chromosome7	89557286	T	0	*	*	1	*	o	0	*	*	2	.C	os	1	C	o
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-Chromosome7	90023550	T	1	,-1c	J	0	*	*	0	*	*	1	,-1c	J	2	,,	JJ
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-Chromosome7	90289454	C	1	T	J	0	*	*	0	*	*	2	.t	JJ	1	.	J
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-Chromosome7	90289478	G	1	A	J	0	*	*	0	*	*	2	.a	JJ	1	.	J
-Chromosome7	90322782	C	5	TT.TT	JJJAJ	8	T.T...T.	FJJJJJJJ	19	TTTT..T..TT.T.....T	JAJJJJJJJJJJJJJJJ<F	4	T..T	JJJJ	18	TT..TT...T......T.	JJJJJJJJAJJJJJJJJJ
-Chromosome7	90322796	A	5	.+1G.+1G.+1G.+1G.	JFJJF	8	.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G	FFJJJJJF	18	.+1G.+1G.+1G.+1G.+1G..+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G	JJJJJJJJJJJJJJJJJJ	5	.+1G.+1G.+1G.+1G.+1G	JJJJJ	18	.+1G.+1G...+1G.+1G.+1G.+1G.+1G.+1G..+1G..+1G.+1G.+1G.+1G.+1G	JJJJJJFJFJJJJJJJJJ
-Chromosome7	90469824	G	1	.	s	0	*	*	0	*	*	2	A.	`J	1	A	J
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-Chromosome7	90949780	A	0	*	*	1	,	J	3	,t,	<JJ	0	*	*	1	t	J
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-Chromosome7	90956784	T	1	^].	A	2	AA	JJ	0	*	*	2	,+4acaa.+4ACAA	JJ	0	*	*
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-Chromosome7	90995114	C	3	t,,	JF7	1	t	J	1	,	F	0	*	*	0	*	*
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-Chromosome7	91056383	G	0	*	*	0	*	*	1	T	o	2	A.	ss	2	..	ss
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-Chromosome7	91333103	A	1	,-1c	H	0	*	*	0	*	*	1	,-1c	H	1	,	F
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-Chromosome7	92360947	C	1	,	F	1	,-4gtgt	F	1	,-4gtgt	J	0	*	*	0	*	*
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-Chromosome7	92589657	A	0	*	*	2	G.	JJ	3	GG.	J<J	0	*	*	1	G	J
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-Chromosome7	95038518	G	3	aaa	JJJ	1	,	J	0	*	*	0	*	*	3	a,,	JAJ
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-Chromosome7	143195686	G	192	,TT,TTTTTTT..TTTTTTTTT.T.TTTTTT..T.TTT..T...TT.T.TTT...T..T...TT.T.TT.T.T..TTTTTTT..T..TTT.TT.TT.TT...TTTTT..TTTTTTTTT..TTTTTTT.TT.TTTTATT.TTTTT.TTTTTTT.T..TT.T.T..TT..TTTT.TTT,.T.TTTTTTTTTTTT	FsssJsJFJJJJJJJJJJJ7JJJJJJJJFFJJJAJJJJJ7JJJJJJJJJJJFJAJFJJJ<JJsJ<J7JJFJAJAJJJAJJ<JJJFJJJJJJJsFJJJJJJJJJJJJJJJJFcJJJAJJAAJJJAJ<JJJFJsJJJ<JJFJJJJJJFJJJJJJJFJJJJ7JJAJFJJJJAJJJFjsFJJJsJsJJJJJJJJJ:	123	TT..T...TTT.TTTTTTTTT....T..TTTTTTTTTT..TTTT.TTTT..TTT..TT....T.T.T.T..T.T...T.TTT.TTT.....T.TTTTT..TTTTT.T...T..T.T..TTTTT	<JsJ<FJ<JAJJJJJJJJJJJkJJJJJFjAJJJFJsJFJJ7JJJJFJJJJJ\JJJs7JssJJJsJFFJAJJsAJJjFoJJsJJsFJssssJosssssJJJJsJsFJJJsssJJJsJJJJJJJ7	149	.TT.TTTT..TTTTTTTTTTTTTT..TTT.TTT.T..T.T.TT.T.TTTT.TTT.TTT.TT.TT.TT.TTTTT.T.T..TTTTTTTT...TTT..TT.TTTT..TTT..TTTTT.TTTT.TTTT.TT.TTTTTTTTTTTTtTT.TT.TT	JJJJJJJJJJJJJJJsJJJJJsJJJJJFJJJJJJJJJJsJJJJJJJFJJFJsJJJJJJFJJJJFJJJJAJFJJFJJJJJJJJJJJJJJJJJJJJFJJoJFJJJJ7J<sJJJJ<JJJJF7JJJs7ssosssJsJssJsJsssssJsJJJ7	157	T,TTT..T.T.T.T.TT.T.TTT..T..TTTTTTTTTTTT..TTTTT.T..TTT..TT.TTTTTTTTTTT..TT.T.TTT...TTT..TT.T.TTT.TT.TTT.T..T.TTT.TT.TTTTT.,TTT...T.t,.TT...TTTTT.TTTTT..TTTT.	JsJJF<sJJFJsFJJeFJJJJJJJsF<JJFJJsJJJ<<JJFJJJJJJJsooJsJJs7JsJJJJAJJJJJJJJJJJJJJJJJsJJJJAsJsJsFJJJJFJsJJFJJFJJJJFJJJJAJJcssssjJ<JsJJsJsoJJJsJsssssJsJ_ssJJJJJAF	156	TT.TTTTTT....TT.TTTTTT.TTT.T.TTTTTT.TTTTT.T.TTTTTTT.T.T.TTT..T..T.TTTTTTTTT.TTT.TTTT.T.TTT.TTTTTTTTTT.T.TTTTT.TTT.T.TTTTTTTTTTTTTTTTTTTT....TTT..TT.T.TTTTTT	JJJJFJJFJJF7JJJJJJJJJJJAJJJJ7JJJJJFJJJJJJFJJJFJJJAAJJJJAJJJJAsJJJJJJJJJJJJJAJJJJJJJFJeFJFJFJJJJJJJJJJJJJJJJJJ7JJJJJJsJJJJFFJAJJJFJJJJJJJJJJJJJJJsJJJJJJsJJsJ
-Chromosome7	143196122	A	174	GGG.G.g.GGGGGGG...GG.GGGGGGGGG.G.G.GGG..GG.G....GG.GGGGG.GGGG..GGG...G..GGGGG.G.GGG..GGGG.GGGG.GG.GG..GGG.G..G...G.G.GGGG.GG.GG.GG.GGGGGGGGGG.GG.GGGGGGG....G.GGGGGGGGGG..GGGG	FFFJJJsJJFJJFJJFJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJ7<JJJAJJJFJJJJJFJJJJJJJJJJJJJAJJFJJJJFJJAJ<JJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFFJJFJJJJJJJJJJJJJJJ<JJJJJJJJJFJJFJJFJJJJJFJAJJJ	105	G..GGGG..G.GGG..G.GG..GGGGGGG.GG...GG.GGG.G..G.GG.GGGGGGG.G.GG.GGG.GGGG.GGGGGGGG.GGGGG...GG.GG..GGGGG.G..	JJsJJJJJJJJFFJJJJFFJJJJJJ<JJFJJJ<JFJJJJJJJJJJJJFJJJJJJJJJJ<JJJJJJFJJJJJFJJJJJJJJFJJJJFJJJJJJJFJJJJJJJJ;AF	140	.G...GGGGGGGGGGGGG...GGGGGG...G.GGG.G..GG.GGG..GGG.GG...G.G.GGGGGG.GG.G.GGGGGGG.GG....G.G.GGGGG.GG.G.G.G.G.G..GGGGGGGG.G..GGGGGGGGGGGGGGGG.G	AIJJJFJJJJJJAJFJJJJJJJJJJJJJJJFFJJJJJJJFJJJJJJFJJJJ<JJJJJJJFJJJJJJJJAJJJJIJJF<JF7JJJJJJJJJAJJJJJFJJJJJJJJJJJ7JJJJJAFJ<JJ<JAFJJJJFAJJ7JAJJJJJ	137	GGGG.G..G.GG.GG...G.G.GGGGG.GGG...G.GGGGGGGGGGGG.GG..G..G..GG.GGG..GG.GGGGGGGGGGG..GGG.GGGGG.G.GGGG..GGGGGG...GGGGGG.GGG..G.GGG.GGGGGGG..	JJJJJJJJJJJJAJFJJJJJJFFJJFJJJFJJJJJJFFJJJJJJJJJJFJJFJFJJJJJJJJFFAJJJJJJJJJJJJJJFJJJJJJAJJJJJJJAJJJJJAJJJJJJJJFJJ<JJJJJJJJFJ7JJ<JJJJJJJJoo	170	GGGGGGG....GG.G.G.GG.GGGGGG...GGGGGGGGGGG.GG.G.G.GG.GGGGGGGG.G.GGGGGGGGGGGGGGG.GGGGG.GGGGG..GGG..GGGG..GGG.GGG..GGG..GGG.GGG..GGGGGGGGGGGGG.GGGGGGGGGG...GGGGGGGGGG.GGGGGG	JJJFJJJJJJJJJJJFJJJFJFJFJJJJJJJJJJJJFJJ<JJJJJJJJJ<J<JJFJJJFJJJJJFJJJJAAJJJFJFJJJJJJJJJJJ<JFJJFJJJJJJJJJJJJ7FJJAJFJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJAFFJJJJJJJAJJJJJFJJJJF7JJJJ
-Chromosome7	143253557	A	0	*	*	0	*	*	1	G	J	2	.G	JJ	1	.	J
-Chromosome7	143333872	C	3	t,,	JJJ	3	,,,	JJJ	2	,t	JJ	1	*	J	4	t,,,	JJJJ
-Chromosome7	143348506	A	0	*	*	1	G	o	2	.G	sW	0	*	*	1	.	s
-Chromosome7	143383032	A	1	,	F	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*
-Chromosome7	143459151	A	5	..T..	JJJJJ	17	.............T...	JJJJJJJJJJJFJFJFF	9	.T.......	JJJJJJJJJ	12	....TT......	FJJJJJJJJJJJ	21	,...T.............T.T	VJJJJJFJFJJJJJFJJJJJJ
-Chromosome7	143459237	C	5	.....	sJFJA	19	.............T..T..	JJJJJAJsJJFJFAJA<J7	10	.......T..	JJJoJJJJJJ	16	..T.............	7AJJJJJJsFJJFJjJ	21	,.T..................	kJ7JJAJJAJJJJFJ<FFFFJ
-Chromosome7	143459324	A	5	,,,,+1g,+1g	JJJJJ	18	.,.g,,,,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g	sAVJJJJJJJJJJJJ7JJ	10	,.,,,,+1g,+1g,+1g,+1g,+2gg	JeJJJJJJJF	15	...,+1g,,,,,,,+1g,+1g,+1g,+1g,+1g	sssJFJJJJJAJJJJ	20	,g,,,,,,,,,,+1g,,+1g,+1g,+1g,+1g,+1g,+1g,+1g	<JJJJJJJJFJ7JFJJJJAJ
-Chromosome7	143635746	T	2	.G	JJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome7	143730090	C	1	.-1A	9	0	*	*	2	..	JJ	2	.-1A^V.	J<	0	*	*
-Chromosome7	143730127	G	1	.	7	0	*	*	2	A.	JJ	2	.A	Js	0	*	*
-Chromosome7	143756050	C	0	*	*	1	.-1G	J	1	.-1G	J	1	.	A	0	*	*
-Chromosome7	143756181	G	0	*	*	1	,-1a	J	1	,-1a	J	1	.	R	0	*	*
-Chromosome7	143837668	T	0	*	*	2	.-1C.-1C	JJ	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome7	143938941	T	1	C	J	2	C.	JJ	1	.	J	0	*	*	0	*	*
-Chromosome7	143938946	G	1	A	J	2	A.	JJ	1	.	J	0	*	*	0	*	*
-Chromosome7	143938952	A	1	.-1C	F	2	.-1C.	Fs	1	.	J	0	*	*	0	*	*
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-Chromosome7	143939064	C	0	*	*	2	,t	JJ	1	,	7	1	t	7	0	*	*
-Chromosome7	144024396	A	2	,,	JJ	2	,,-1c	FJ	0	*	*	3	,,g	JJJ	0	*	*
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-Chromosome7	144333442	G	0	*	*	2	.A	JJ	1	A	J	1	.	J	0	*	*
-Chromosome7	144343480	G	2	.A	o`	1	A	s	3	A..	kss	2	.A	as	3	...	sss
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-Chromosome7	144343530	A	1	,-1c	G	1	,	J	3	,-1c,,	CJJ	2	,-1c,	AJ	3	,,-1c,	JCJ
-Chromosome7	144377134	T	0	*	*	1	.	A	1	C	J	0	*	*	2	.C	7J
-Chromosome7	144377159	G	0	*	*	1	.	J	3	T..	JAB	0	*	*	2	.T	FJ
-Chromosome7	144377163	A	0	*	*	1	.	s	3	..-1C.	JJJ	0	*	*	2	.-1C.	FJ
-Chromosome7	144377172	A	0	*	*	1	.	j	3	G..	JWn	0	*	*	2	.G	jJ
-Chromosome7	144377202	G	0	*	*	1	A	s	3	.A.	sAs	0	*	*	2	..	js
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-Chromosome7	144415001	C	0	*	*	2	T,	sJ	1	T	s	0	*	*	1	,	J
-Chromosome7	144415009	C	0	*	*	2	T,	sJ	1	T	o	0	*	*	1	,	J
-Chromosome7	144541909	A	0	*	*	1	G	s	2	.G	ss	0	*	*	1	.	s
-Chromosome7	144557385	C	0	*	*	0	*	*	5	....T	ssesR	3	..,	ssJ	4	..TT	sssj
-Chromosome7	144557409	A	0	*	*	0	*	*	5	..G.,	ssosA	3	..,	eeJ	4	..T.	sssj
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-Chromosome7	144659256	T	0	*	*	0	*	*	1	,	A	2	,c	AF	1	c	J
-Chromosome7	144790135	A	1	G	J	1	.	J	3	G..	FJo	0	*	*	4	.G..	JJ7A
-Chromosome7	144801189	C	0	*	*	0	*	*	1	T	J	1	,	J	2	,t	JA
-Chromosome7	144808604	T	0	*	*	0	*	*	2	cc	7A	1	.	s	3	,c,	JAJ
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-Chromosome7	144834794	G	0	*	*	1	.-3ACC	J	0	*	*	1	.-3ACC	J	2	.-3ACC.-3ACC	JJ
-Chromosome7	145014218	C	1	.	s	0	*	*	1	.-6CCATGG	5	1	,-6ccatgg	I	0	*	*
-Chromosome7	145035571	T	5	.AA..	JJJJF	3	.A.	JJJ	4	...A	JJJJ	7	....A..	J<JJJJF	5	.....	FFFJJ
-Chromosome7	145036129	C	0	*	*	1	T	f	2	..	ss	4	.T..	ssss	0	*	*
-Chromosome7	145047825	T	0	*	*	3	.-3ATA.-3ATA.-3ATA	999	1	.-3ATA	9	1	.	J	0	*	*
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-Chromosome7	145256147	A	1	.-2CG	@	0	*	*	1	.-2CG	J	1	.-2CG	J	0	*	*
-Chromosome7	145282003	C	0	*	*	2	.T	JJ	1	T	J	0	*	*	1	*	J
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-Chromosome7	145688780	C	1	,	J	0	*	*	1	a	J	0	*	*	2	.a	HJ
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-Chromosome7	145765698	T	6	c,,,,,	<JJJFF	0	*	*	6	,a,,,,	J8J7JF	4	,,,,	J<J<	10	,,c,,,,,,,	J77J77JFAJ
-Chromosome7	145765807	C	6	,,,,,,	JFJJJJ	0	*	*	6	,,,t,,	JJJJJJ	4	,,,t	JAJF	13	,,,,,,,,,,t,,	JF7JJ7<JJJJJ7
-Chromosome7	145886262	T	0	*	*	2	,g	JJ	0	*	*	1	g	J	1	a	J
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-Chromosome7	146262645	C	18	,,,,,,,,t,,,,,,,,,	JJJJJJJFFJJJJJJJJJ	10	,,,,,,,,,,	JJJJAJFJJJ	21	,,,,t,,,,,,,,,,,,,,,t	JFJJJJFJJJJJJJJJJJJJJ	11	,,,,t,,,,,,	JJJJJFFFJJJ	20	,,,,,,,,,,t,,,,,,,,,	FJJFJJFJJJFJJJJJJAJJ
-Chromosome7	146295996	G	1	.	J	0	*	*	1	A	J	0	*	*	2	A.	J7
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-Chromosome7	146296263	T	1	,	F	0	*	*	1	c	F	0	*	*	2	c,	FF
-Chromosome7	146464033	C	2	.t	JA	2	tt	AF	0	*	*	0	*	*	1	.	s
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-Chromosome7	146716362	G	2	T.	JJ	0	*	*	1	.	J	0	*	*	1	A	J
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-Chromosome7	146809188	C	1	a	7	2	.a	gJ	0	*	*	1	.	A	0	*	*
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-Chromosome7	146829344	T	6	CC.CCC	JJ<JJJ	2	.C	JJ	0	*	*	0	*	*	1	.	J
-Chromosome7	146889566	A	1	,	J	2	,g	JJ	6	,gg,,,	JFJJFJ	4	,,gg	FJJF	7	gg,gg,g	JJJJJJA
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-Chromosome7	146929784	A	0	*	*	0	*	*	2	C.	<A	1	C	J	1	.	A
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-Chromosome7	146950160	G	3	...	JJJ	2	.T	JJ	1	T	J	0	*	*	0	*	*
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-Chromosome7	147124175	A	1	.	J	2	.T	JF	1	T	J	0	*	*	3	T..	JJJ
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-Chromosome7	147124412	A	0	*	*	2	,g	JJ	1	g	J	0	*	*	3	,g,	JJJ
-Chromosome7	147124418	T	1	,	J	2	,c	JJ	1	c	J	0	*	*	3	,c,	JJJ
-Chromosome7	147124419	C	1	,	J	2	,a	JJ	1	a	J	0	*	*	3	,a,	JJJ
-Chromosome7	147124425	C	1	,	J	2	,,-1a	JJ	1	,-1a	J	0	*	*	3	,,-1a,	JJJ
-Chromosome7	147151832	T	2	.C	JF	1	.	s	0	*	*	0	*	*	1	C	J
-Chromosome7	147215157	T	1	.	J	1	.-1A	J	0	*	*	0	*	*	1	.-1A	J
-Chromosome7	147371090	G	5	AA.A.	FJJJF	4	..AA	JsJJ	12	,.........A.	sJJJJJJJosJJ	8	........	JAJFJFJJ	9	...A.A...	JJJJJJJJJ
-Chromosome7	147371098	C	5	TT.T.	JJJJF	4	..TT	JsJJ	13	,..........T.	sFJJJJJJ7ssJF	7	T..T.T.	JJ<JJJJ	9	...T.T...	JJJJJJJJJ
-Chromosome7	147380164	G	1	,	J	0	*	*	4	c,,,	JJJA	0	*	*	1	c	J
-Chromosome7	147380910	G	1	A	J	2	.A	oJ	6	....A.	sssJJo	3	...	sJs	2	A.	JA
-Chromosome7	147388231	C	3	,,,	JJF	2	,A	J`	1	T	J	0	*	*	0	*	*
-Chromosome7	147388327	C	5	,,,,A	FJFAJ	1	A	j	2	..	sF	0	*	*	0	*	*
-Chromosome7	147390185	C	1	.	J	0	*	*	1	T	J	2	.T	<J	2	.T	J7
-Chromosome7	147403009	T	0	*	*	1	,	J	0	*	*	1	c	J	3	,,c	JJJ
-Chromosome7	147405041	T	0	*	*	0	*	*	3	.C.	eF7	1	.	J	4	CCCC	FJA7
-Chromosome7	147405436	G	1	a	J	0	*	*	1	,	J	0	*	*	4	,,,a	JJJJ
-Chromosome7	147405479	A	1	g	J	0	*	*	2	,,	J7	0	*	*	4	,,,g	JJJJ
-Chromosome7	147411997	C	4	T...	JFJJ	2	T.	JJ	5	.....	JJJJJ	6	...T..	JJJJFJ	2	T.	JJ
-Chromosome7	147511952	G	1	.-1A	I	0	*	*	0	*	*	1	.	J	1	.-1A	I
-Chromosome7	147659471	G	0	*	*	3	..+1C.+1C	<;C	1	.	J	0	*	*	2	.-1T.-1T	JJ
-Chromosome7	147744973	G	0	*	*	1	T	[	0	*	*	1	,	s	2	t,	JJ
-Chromosome7	147764410	T	1	.-1C	J	0	*	*	2	.-1C.-1C	JF	0	*	*	1	.-1C	J
-Chromosome7	148198796	G	3	..T	JJJ	0	*	*	3	...	JJJ	0	*	*	2	TT	JJ
-Chromosome7	148198800	G	3	...	JJJ	0	*	*	3	AA.	JJJ	0	*	*	2	AA	JJ
-Chromosome7	148198917	T	4	Cc,,	_JAJ	0	*	*	3	.$cc	nAJ	2	.c	os	2	cc	JJ
-Chromosome7	148198951	C	3	,,a	JJ5	0	*	*	3	,gg	JJJ	1	.	s	0	*	*
-Chromosome7	148199059	C	0	*	*	2	.t	Js	3	t..	sHF	2	..	JJ	0	*	*
-Chromosome7	148199067	G	0	*	*	2	.a	Jk	3	,..	sjo	2	A.	JJ	0	*	*
-Chromosome7	148199071	G	0	*	*	2	A,	Js	3	,A.	s\e	2	T.	FJ	0	*	*
-Chromosome7	148199090	T	0	*	*	2	.a	Fj	3	,C.	sks	2	..	JJ	0	*	*
-Chromosome7	148199137	G	0	*	*	2	.,	kj	3	,A.	sas	2	A.	As	0	*	*
-Chromosome7	148199147	G	0	*	*	2	.a	sa	3	,A.	o`o	2	A.	Jo	0	*	*
-Chromosome7	148199163	C	0	*	*	2	.,	ks	2	.T	R`	2	T.	Fs	0	*	*
-Chromosome7	148199168	T	0	*	*	2	.c	k5	2	.C	M]	2	A.	Fs	0	*	*
-Chromosome7	148199176	G	0	*	*	1	,	J	2	aa	FJ	2	A.	Js	0	*	*
-Chromosome7	148199190	G	0	*	*	1	,	F	1	a	J	2	A.	bs	0	*	*
-Chromosome7	148199193	C	0	*	*	1	,	J	1	a	J	2	G.	bs	0	*	*
-Chromosome7	148199198	A	0	*	*	1	,	J	1	g	J	2	G.	[s	0	*	*
-Chromosome7	148217976	G	0	*	*	0	*	*	3	,,a	JJA	1	a	J	1	,	J
-Chromosome7	148217981	T	0	*	*	0	*	*	3	ccg	JJJ	1	g	J	1	,	J
-Chromosome7	148218000	C	0	*	*	0	*	*	3	,,t	FFF	1	t	F	1	,	F
-Chromosome7	148224932	A	0	*	*	0	*	*	1	.-1T	F	1	.-1T	J	2	..-1T	JJ
-Chromosome7	148280843	C	1	a	A	0	*	*	1	,	J	0	*	*	2	g,	JJ
-Chromosome7	148280848	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
-Chromosome7	148280879	G	1	a	7	0	*	*	1	,	J	0	*	*	2	a,	FJ
-Chromosome7	148280908	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
-Chromosome7	148280911	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
-Chromosome7	148314979	G	0	*	*	4	,..t	FsJJ	2	,a	JJ	2	,,	JJ	0	*	*
-Chromosome7	148318811	G	2	,a	<J	0	*	*	0	*	*	2	.,	sJ	1	a	J
-Chromosome7	148411800	C	1	t	J	2	T.	sJ	1	,	J	0	*	*	0	*	*
-Chromosome7	148535565	T	0	*	*	0	*	*	1	.-1C	s	1	.-1C	f	1	.	F
-Chromosome7	148597564	C	0	*	*	4	....	JJJJ	2	.T	AJ	0	*	*	1	T	J
-Chromosome7	148620276	C	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,	J
-Chromosome7	148661594	A	0	*	*	0	*	*	1	.	A	1	G	J	2	,G	sA
-Chromosome7	148661671	T	0	*	*	0	*	*	1	.	J	1	C	o	2	,C	sJ
-Chromosome7	148661673	A	0	*	*	0	*	*	1	.	<	1	G	o	2	,G	sJ
-Chromosome7	148661677	T	0	*	*	0	*	*	1	.	J	1	C	s	2	,C	sJ
-Chromosome7	148661683	T	0	*	*	0	*	*	1	.	F	1	C	s	2	,C	sJ
-Chromosome7	148661692	G	0	*	*	0	*	*	1	.	J	1	A	s	2	,A	sF
-Chromosome7	148748786	A	0	*	*	1	,-5tgcac	;	1	,	F	1	,-5tgcac	;	0	*	*
-Chromosome7	148766597	T	0	*	*	1	C	J	1	.	o	2	.C	Js	0	*	*
-Chromosome7	149349323	T	3	.+1A.+1A.+1A	JJJ	0	*	*	2	.+1A.	FJ	0	*	*	1	.	F
-Chromosome7	149349335	T	3	CCC	JJJ	0	*	*	2	A.+2AC	J?	0	*	*	1	.	J
-Chromosome7	149349523	A	3	t,,	JJJ	1	T	o	2	,,	JF	0	*	*	0	*	*
-Chromosome7	149349534	T	3	c,,	JFJ	1	A	s	2	,,	JJ	0	*	*	0	*	*
-Chromosome7	149349569	C	3	aa,	JJJ	1	A	s	2	,,	JF	0	*	*	0	*	*
-Chromosome7	149349572	G	3	a,,	JJA	1	A	s	2	,,	JJ	0	*	*	0	*	*
-Chromosome7	149358685	T	0	*	*	1	c	7	2	,c	JJ	0	*	*	1	,	F
-Chromosome7	149358758	G	0	*	*	1	c	J	2	,c	JJ	0	*	*	1	,	J
-Chromosome7	149358770	G	0	*	*	1	c	F	2	,c	JJ	0	*	*	1	,	J
-Chromosome7	149508647	T	0	*	*	1	.	J	1	.-3AGC	J	0	*	*	1	.-3AGC	J
-Chromosome7	149510115	A	0	*	*	1	c	J	2	.,	JF	2	c^],	A;	0	*	*
-Chromosome7	149510117	A	0	*	*	1	g	J	2	.,	AF	2	g,	J>	0	*	*
-Chromosome7	149510122	A	0	*	*	1	c	J	2	.,	JJ	2	c,	FF	0	*	*
-Chromosome7	149510123	T	0	*	*	1	c	J	2	.,	FJ	2	c,	FJ	0	*	*
-Chromosome7	149510160	G	0	*	*	2	a.	Js	2	.,	JJ	2	a,	<F	0	*	*
-Chromosome7	149510176	C	0	*	*	2	a.	Js	2	.,	JJ	2	a,	FA	0	*	*
-Chromosome7	149510209	C	0	*	*	2	g.	Js	2	.,	FJ	2	g,	JJ	0	*	*
-Chromosome7	149510210	A	0	*	*	2	g.	Js	1	,	J	2	g,	JJ	0	*	*
-Chromosome7	149510222	A	0	*	*	1	g	8	1	,	J	2	g,	8J	0	*	*
-Chromosome7	149513237	C	0	*	*	1	*	J	0	*	*	1	,	A	1	.-1A	a
-Chromosome7	149870642	C	0	*	*	2	t,	JJ	0	*	*	1	a	A	1	,	J
-Chromosome7	149889174	A	2	,-4taag,-4taag	55	0	*	*	0	*	*	1	.	s	1	,-4taag	5
-Chromosome7	150079851	T	0	*	*	0	*	*	1	.-1G	J	1	.	<	2	.-1G.	JJ
-Chromosome7	150079986	T	0	*	*	2	CC	ss	0	*	*	1	,	<	3	C,c	sJJ
-Chromosome7	150273116	A	6	,,,,,g	JJJJJJ	5	.g,,,	sJJJA	4	,,g,	JJJF	5	,.,g,	JfJAJ	8	,,,,,,,,	7FJJFJJF
-Chromosome7	150401611	T	1	.-1C	J	1	G	s	0	*	*	0	*	*	1	.-1C	J
-Chromosome7	150524942	C	1	.	J	0	*	*	2	.G	JJ	1	G	J	2	G.	FJ
-Chromosome7	150524980	G	0	*	*	0	*	*	1	,-3aac	6	1	,-3aac	6	2	.-3AAC,-3aac	_6
-Chromosome7	150525031	C	1	,-2ct	7	0	*	*	1	,-2ct	7	1	,-2ct	7	1	,-2ct	7
-Chromosome7	150553761	T	1	,	J	0	*	*	1	,-4aaaa	J	0	*	*	1	c	J
-Chromosome7	150625450	A	0	*	*	1	g	<	0	*	*	2	Gc	eF	1	.	J
-Chromosome7	150625464	A	0	*	*	1	,	J	0	*	*	2	.c	jJ	1	G	J
-Chromosome7	150625492	C	0	*	*	2	a.	<A	0	*	*	2	Aa	VJ	1	.	<
-Chromosome7	150625494	A	0	*	*	2	g.	FF	0	*	*	2	G,	oF	1	G	J
-Chromosome7	150625509	G	0	*	*	2	t.	JJ	0	*	*	2	Tc	sF	1	.	F
-Chromosome7	150625513	G	0	*	*	2	a.	JJ	0	*	*	2	Aa	oJ	1	.	F
-Chromosome7	150625516	C	0	*	*	2	a.	FJ	0	*	*	2	Aa	oJ	1	.	A
-Chromosome7	150625521	G	0	*	*	2	t.	JJ	0	*	*	2	T,	sJ	1	T	F
-Chromosome7	150625533	C	0	*	*	2	a.	JJ	0	*	*	2	Aa	VJ	1	.	J
-Chromosome7	150625540	T	0	*	*	2	g.	<J	0	*	*	2	gg	JJ	1	.	J
-Chromosome7	150625710	T	1	C	J	1	,	J	0	*	*	0	*	*	2	,c	JJ
-Chromosome7	150842663	C	0	*	*	2	.G	jW	1	.	`	0	*	*	1	g	F
-Chromosome7	150870104	T	0	*	*	1	.	F	1	G	F	0	*	*	3	..G	JJJ
-Chromosome7	150952450	T	0	*	*	7	....G..	nnjnJVn	6	...A..	snJJJn	9	.........	VnnnnJJJn	16	...............A	JnnJnnnnjnjnnnnF
-Chromosome7	150952458	G	0	*	*	7	T...T..	sssooes	6	.T....	ssJsVs	9	.........	ssossjJJs	15	.....T.....T...	Jsssssoosss`sjk
-Chromosome7	150952459	A	0	*	*	7	C...C..	sssoses	6	.C.+6TCTCTC..+4TCTC.	ssFsVs	9	.......+6TCTCTC.+6TCTCTC.	ossssaJJs	15	.+6TCTCTC....C.....C...	Jsssssosssssss\
-Chromosome7	151043725	G	0	*	*	1	,-4aaat	F	0	*	*	2	,,	JJ	1	,-4aaat	J
-Chromosome7	151066211	C	1	,-2at	H	0	*	*	0	*	*	2	,-2at,-2at	H7	2	,-2at,	HF
-Chromosome7	151095376	G	0	*	*	0	*	*	1	c	A	2	.T	ss	2	t,	JJ
-Chromosome7	151095386	A	0	*	*	0	*	*	1	t	A	2	.T	os	2	,,	JJ
-Chromosome7	151095388	G	0	*	*	0	*	*	1	t	J	2	.T	ss	2	,,	JJ
-Chromosome7	151095396	G	0	*	*	0	*	*	1	t	F	2	A.	ss	2	,a	JJ
-Chromosome7	151095399	C	0	*	*	0	*	*	1	a	A	2	.A	ss	2	,,	JJ
-Chromosome7	151095420	G	0	*	*	0	*	*	1	t	J	2	,C	Js	2	,,	JJ
-Chromosome7	151095442	C	0	*	*	0	*	*	1	,	J	1	t	J	2	,t	JJ
-Chromosome7	151116773	G	1	.	<	0	*	*	4	CC.C	JJJJ	2	.C	JJ	1	C	F
-Chromosome7	151116802	C	1	T	F	0	*	*	4	..AT	FJJJ	2	.A	AJ	1	.	J
-Chromosome7	151116935	G	1	,-1c	@	0	*	*	1	.	s	2	.-1C,-1c	@7	0	*	*
-Chromosome7	151555818	C	2	..	JF	0	*	*	0	*	*	1	A	F	2	.A	sJ
-Chromosome7	151555823	G	2	..	JJ	0	*	*	0	*	*	1	A	J	2	.A	sJ
-Chromosome7	151555918	G	2	,,	JJ	0	*	*	0	*	*	1	A	s	2	,a	JJ
-Chromosome7	151600294	T	1	,-1c	H	0	*	*	2	,-1c,-1c	HH	0	*	*	3	,-1c,-1c,-1c	AHH
-Chromosome7	151844104	G	4	..T.	ssRV	4	TT..	ssoo	4	T...	skos	3	.T.	osV	1	.	s
-Chromosome7	151906721	T	0	*	*	1	C	A	2	C.	FJ	1	.	J	0	*	*
-Chromosome7	151906725	C	0	*	*	1	T	J	2	T.	FJ	1	.	J	0	*	*
-Chromosome7	151906749	A	0	*	*	1	.-1G	W	2	.-1G.-1G	AJ	1	.	J	0	*	*
-Chromosome7	151906780	A	0	*	*	1	.-1G	j	2	.-1G.-1G	JJ	1	.	J	0	*	*
-Chromosome7	151916564	G	2	tt	7J	0	*	*	1	,	J	0	*	*	3	t,,	<7A
-Chromosome7	151916592	A	2	,-1t,-1t	AJ	0	*	*	1	,	J	0	*	*	3	,-1t,,	<<J
-Chromosome7	151916624	G	1	a	J	0	*	*	1	,	J	0	*	*	2	a,	FJ
-Chromosome7	151916651	C	2	tt	AJ	0	*	*	1	,	J	0	*	*	3	t,,	JJA
-Chromosome7	151917338	G	1	,	J	0	*	*	1	t	J	3	.tt	sFJ	0	*	*
-Chromosome7	151917365	A	1	,	J	0	*	*	1	g	J	3	.gg	sJ7	0	*	*
-Chromosome7	151962866	C	2	T.	J7	4	T...	JJ`J	0	*	*	0	*	*	2	..	JJ
-Chromosome7	151962904	T	1	C	J	4	C...	JJss	0	*	*	0	*	*	2	..	FJ
-Chromosome7	151962907	A	2	G.	JF	4	G...	JJss	0	*	*	0	*	*	2	..	FJ
-Chromosome7	151963027	C	2	t,	JJ	3	,,t	JJJ	0	*	*	0	*	*	2	,,	JJ
-Chromosome7	151963030	A	2	ct	JJ	3	,c,	JJJ	0	*	*	0	*	*	2	,,	JJ
-Chromosome7	151963058	C	2	t,	JJ	2	,,	JJ	0	*	*	0	*	*	2	a,	JF
-Chromosome7	151963084	G	2	a,	JJ	2	a,	JJ	0	*	*	0	*	*	2	,,	JJ
-Chromosome7	152050618	A	1	c	J	0	*	*	2	ct	FJ	1	.	s	0	*	*
-Chromosome7	152067046	T	0	*	*	2	..-3ATA	A8	1	.-3ATA	7	0	*	*	1	.-3ATA	7
-Chromosome7	152067217	A	0	*	*	2	g,	JJ	1	g	J	0	*	*	1	,	F
-Chromosome7	152153159	G	2	,-1c,-1c	JJ	0	*	*	1	,-1c	J	0	*	*	6	,-1c,-1c,-1c,-1c,-1c,-1c	FJJFJF
-Chromosome7	152153172	G	2	,-1a,-1a	FF	0	*	*	1	,-1a	A	0	*	*	6	,-1a,-1a,-1a,-1a,-1a,-1a	JJJJJJ
-Chromosome7	152190843	C	0	*	*	1	.	J	1	.-4CTAG	?	1	.-4CTAG	7	0	*	*
-Chromosome7	152202726	G	1	,	J	0	*	*	1	A	K	0	*	*	2	C.	ss
-Chromosome7	152202758	C	1	,	J	0	*	*	1	A	M	0	*	*	2	T.	ss
-Chromosome7	152202792	G	1	,	J	0	*	*	1	t	J	0	*	*	2	,t	JJ
-Chromosome7	152202793	A	1	,	J	0	*	*	1	g	F	0	*	*	2	,g	JJ
-Chromosome7	152202858	A	1	,	J	0	*	*	1	g	J	0	*	*	2	,g	JJ
-Chromosome7	152264926	C	1	.	J	0	*	*	0	*	*	2	.T	JJ	1	T	J
-Chromosome7	152264989	T	1	.	J	0	*	*	0	*	*	2	.C	Js	1	C	J
-Chromosome7	152264998	G	1	.	J	0	*	*	0	*	*	2	T.	Jo	1	A	J
-Chromosome7	152265024	C	1	A	J	0	*	*	0	*	*	2	T.	Fk	1	.	A
-Chromosome7	152272837	C	0	*	*	1	t	J	3	a,,	JJJ	0	*	*	2	,,	J<
-Chromosome7	152294855	T	0	*	*	1	,	J	1	c	J	0	*	*	2	c,	JJ
-Chromosome7	152300847	G	0	*	*	1	.-3GAT	8	0	*	*	1	.-3GAT	8	1	.-3GAT	B
-Chromosome7	152341298	C	1	.-6TGGTAT	J	0	*	*	0	*	*	1	.	J	2	.-6TGGTAT.	J<
-Chromosome7	152486146	G	0	*	*	1	A	J	0	*	*	1	.	J	2	A.	JJ
-Chromosome7	152497740	C	1	,	J	0	*	*	0	*	*	1	,-5agagt	J	1	,-5agagt	A
-Chromosome7	152497754	A	1	,-1c	J	0	*	*	0	*	*	1	,-1c	J	1	,-1c	J
-Chromosome7	152499259	T	0	*	*	2	CC	JJ	2	CG	JF	0	*	*	1	G	J
-Chromosome7	152499266	G	0	*	*	2	..	JJ	2	.T	JJ	0	*	*	1	T	J
-Chromosome7	152499283	C	0	*	*	2	..	JJ	2	.T	JJ	0	*	*	2	T.	AJ
-Chromosome7	152499294	T	0	*	*	2	..	FJ	2	..-1G	JA	0	*	*	2	.-1G.	JJ
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-Chromosome7	208841699	A	8	.-6GATGAT.......	8JJJJJFF	12	............	JJJJJJFJFJJJ	10	T.........	JJJJJJJJJF	4	....-6GATGAT	JJ<8	12	............-6GATGAT	JJJJJJJFJJJ8
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-Chromosome7	208911752	A	1	.-2TT	F	0	*	*	0	*	*	1	.-2TT	J	1	.-1T	J
-Chromosome7	208912406	G	2	.A	<J	0	*	*	1	.	7	0	*	*	1	A	J
-Chromosome7	208912549	C	2	g,	JF	0	*	*	1	,	7	0	*	*	1	g	7
-Chromosome7	208912614	G	2	t,	JA	0	*	*	1	t	J	0	*	*	1	a	7
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-Chromosome7	208912656	A	2	g,	J7	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome7	208914066	C	1	A	J	0	*	*	1	.	J	2	a.	sJ	0	*	*
-Chromosome7	208914071	C	1	T	J	0	*	*	1	.	F	2	t.	sJ	0	*	*
-Chromosome7	208914084	C	1	T	o	0	*	*	1	.	J	2	t.	sm	0	*	*
-Chromosome7	208914091	G	1	.	s	0	*	*	1	A	J	2	,A	sn	0	*	*
-Chromosome7	208914101	T	1	C	s	0	*	*	1	.	s	2	c.	ss	0	*	*
-Chromosome7	209141862	T	4	C...	FoJJ	2	CC	JJ	2	C.	Js	5	..C..	JJJJJ	2	..	JJ
-Chromosome7	209156182	A	0	*	*	1	.	s	0	*	*	1	.-10GGAAAAACTG	S	1	.-10GGAAAAACTG	S
-Chromosome7	209200996	A	0	*	*	0	*	*	3	t,,	JJF	1	t	J	1	,	J
-Chromosome7	209201018	T	0	*	*	0	*	*	3	,aa	JJJ	1	,	J	1	a	J
-Chromosome7	209201102	A	0	*	*	0	*	*	3	,gg	JJJ	1	,	F	1	g	J
-Chromosome7	209225400	G	0	*	*	2	..	FJ	1	T	J	2	T.	Js	0	*	*
-Chromosome7	209247524	T	0	*	*	1	G	J	2	.G	JJ	0	*	*	1	.	J
-Chromosome7	209249142	G	1	t	J	0	*	*	3	..,	soF	2	,t	JJ	0	*	*
-Chromosome7	209277132	A	1	.	J	0	*	*	1	C	J	0	*	*	3	CC.	JJJ
-Chromosome7	209308109	C	2	.T	<J	1	T	J	0	*	*	1	.	s	0	*	*
-Chromosome7	209352688	A	141	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	AJJJJJJ<JJJJJJJJJJJJJJJJJJJJJJJ7JJJJJJAJJJFJJJJJFJJJJFJJJFJJJJFJAJJJJJFJJJJJ7JJJAJJJJJJJJJJJAJFFJJJAJJJJJJJJJJJJJ<JJFJJJJJFJJAJJJFJJJJJFJFJJJ	75	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	F<JJJ7JJJJJJJJJ<JJFJJ<AJJJJJJ7<JJJJJFJJJJJJJFJJJJJJF<FJJJJJ7JFJFJJ<JJAJ7JJJ	123	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGG	JJJJJJJJJJJJJAJJJJJJFJJJJJJ77JJJJJAJJJJJJJJJJJAJJ<JJJJJFJJFJJJAJFJJJJFJJJFJJJJJJJJJFJ7FJJJFJJJFJJJJJJJJJJJJJ<JJJJJJJJJJJJJ<	70	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGG	JJJJJJJJJFFFFJJJJJJJJJFAJJJJFJJJJ7JJFJJJFJJJJJJJJJJJFJJFJJJJFJJJJJJJJJ	165	GGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	A7JJJFJJJJJJJJ<AJAJJJJJJJJJJAJ7FFJFJJJFJJJJJJJJJFJJJ<JJFJJJJJJJJJJJJJJJJJFJJFJJJJJ<AF7<FJJJJJJJJJJJJJJFJFJFFJJJJJJJJFAJFJJF<JJJJJJ<JJJJFJJJJJFJJJJJJJFJ7JJJJFJJJJJJJJ
-Chromosome7	209352694	G	142	..............................................................................................................................................	JJFJJJJJJJJJJFJJJJ7J<JFJJJFJJJJAJJJJJFJFAJJJJJJF<JJ7JJJJJJJJJJFFFJJJJJJ7JJJFJFJJJJJJJJJJJJJJFJFAFJJJFJJJFJJFJJJJJJJJJJFJJJJJ<J<JJJJJJJJJ7JFJJJ	76	..A....................................A....................................	JJJJ7J7JJJFJJFJJFJF<JFA7FFJJJJ7FJJJJJFJJFJJJJJJFJ7JJ7AJJJJJJJJJJJJJJJJFFJFJA	127	............................................................T....................A.............................................	JJJJJFJJJJJJJJFJ7FJJJJJJJJJJJAJ7JAJJJJ<J<J7JJJFJAJJAJJJJJJFJJJJJJJJJ7JFJJJJJJJJFJJJJJJJJ<JJAJJJJ<JJJJJJJJJJJJJAJJFJJJJJJJFJJAJJ	72	............................................................A...........	JJJJJJJJJJ7FAJJJJJJJJJJFJJJFJJJJJJJJJJJJJJJJFJJJJJJJJAJJFJJJFJJJJJJJJJJJ	165	.......................................................................................................................................T.............................	JJJJJJJJJJJAA7JJJJJJAFJJJJJJJJ<JAJJJJJJJJJAFJJ<JJ<7JJFJJJJAJFJJFJJJJJJJJJJFJFAJJJJJJFJFFJAJJJJJJJJJJJJJJJJJFJJ7JJJJAFJJJJJAJJJJJJJJAJJJAJJJJJJJJJJJJJJAJJJJJJJJJJJJ<F
-Chromosome7	209352702	C	145	...............+1T..................................................................................................................................	FJJ7JJ7FJJJJJJJJFJJJJFJFJFJJJJJJJJJJJJ7JJJJJJJJJJAJJJJJFJJJJJJJJAF<JJJFJJFJJJJJJJJJFJJJJJJJJJJJJAJFJJ<JJ7JAJJF<JJJJJJJFFJJJJJJAJ7JJJ7FJJJJFJFJJJA	77	.............................................................................	JFJJFJ77JJJJJFJFJJJ<JJFAFJJJJFJJJJJJAJJJJJ7JJJJJJJJJ<<FJ<JJFJFJJJJFJJJJF7FJJF	131	...............T...........................-1T........................................................................................	FJJJJJJJJJJJJJJJFJFJJFJJJJJJJFJFJJJJFJAJJJJJJJJJJJJJFJJJJJJJJJFJFJJJJFJJJJJJJJJJJJJJJAJFJJJJJJJJJ<JJJ7JJJJJJJJJFJJFJJJJJJJJFFFJJF<A	74	.....+1T.....................................................................	JJFJJJJFFJFJFJJFJJJJJJ<JJJJJAJJJAFJJFFJJFJJJJFJJJJJJJJFJJJJJFJJJFJJJ7JJJJA	168	........................A..............................................................-1T.................................................................................	JJFJJJJJJJJJFAFJJJJJJJJJJJJJ7JFJJJJJAFJJJJJJJJJJFJJJFJJFJJFJJJJFJFJJ<JJJJJJFJJJJJJJFJJAFJJJJJJJJJJJJJJJJJJJFJFJJJJ<FFJJJJJJJJJJJAJJFJJJJAJJJJJJJJJJFJJAJJJJJJJJJJJFJJAJF
-Chromosome7	209352994	C	142	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	7FJJJJJAFA<<JJAJAJAJ7FFJJJAJFAFFJAFFJ7<JJ7<J<AFFJJJ<JJJAJJJJJJJJJJJJJJJJJJ7JFJJJJJJJAJJJJ7FJJF<<7FJ<7FJJJFFAJ<7JJJJJ7JJFJJJJJJJJJJJJFJFJJJJAJJ	79	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,	FJFJFJ7FAJ<JJJFFFJJJJJAJ<J<J7J<JFJ7A7<JF7JFJFJJ<AJJJFJJFJ7F7JFJJA7JJJJAJ7FFJFJJ	127	,,,-1t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJ<FJJJJJJFJAJFJFJFJJJJJJJJJJJAJAJJJFAAJJFJAJA<7JJJFJFJJFJJJFJJJAJJAJJ7J7A<JFFAJJJJJFJ7JJ7JJJJAJAFFJJJJJAFJJJJJJFJA<<<AFA	75	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJAJJ<AJJJ<FJJJJAJJJJFJFJAJJ7J<JJJJJ<FJAJAJFFJJJJ<FJJJ<JAJJ<JJJFJ7JFJFFJAF	165	,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJ<JF<FJJJJJJJJFJJJJFJJFJ<JJJJ7FJJ<JJJJJJJFFJJJJJF<JJFAJJFJJJJJJJJAJJJJJFAJJJFJJF<JJFJJJ7FJJJJ<FFJJJJJJJFJJJJJJJFJJJAJFJJJJJJJFJF7A<JFJAJJJ<AFJJJ<JJJF<7JJFJJFJJJJF
-Chromosome7	209353009	G	142	,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,	AJJJJJJJJJJJA7JJJF<JFJJJJJJJJAJFJJJJAFJJJJFJAJJJJJ<FJJ<AJJJJJFJJJJJFFFJJAJJFJFJJJJJJ7JAJJJJ<JJJJJF<FFFJJJFJJJJJJJJJ7JJA<JJJJJJJJJJJJJJJJJJJJJA	79	,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,	AJJJJJJJFJFJJJJJJFJJJJ7JFFFAJFJJFJFFJFFAFJFJJJFJJJFJFJJJJJJ7JJJJJAJJFJJJFJJ<JJJ	128	,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,t,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJFAJJ7JJJFJJAJJ<JF<FFJJJJJJJJJFJFJFJJJJAAJJJ<JAJFJJJJJAJ<JJJJFJFJJJFJJJFJJFFFJA77JJJFFFJJJJJ<JJJ<JFAJ7JFJFAJJ<J7JJJJJJ<JFFJ7	76	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,a,,,,,,,	JJJFJJJA<<JFJ<JJJFJFJJJFJFFJAJFJJ7JFJJJJFJFFJJAFJJJ<JJFJJJJJJJJJJJAJJJFF<JJJ	168	,,,,t,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJAFJJJJ<JJJJFJJJFFJJJFJFJFJJ7JJJJ<JJFJFJJJJFJJFFJJJFAJJJJ<JJJJJJ<FJJJFJJFJF<JJJFAFJJFJFJJJJJJ<FJJJJJJJJFJJJFJJJJJJJJJJJJAJJJJ7JJ7JJFJJFJJ<FAJJFJ<JJJJJ<JJFJJJJJJJJ7<F
-Chromosome7	209353097	C	153	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJFFJ7JJFJFJJJFJFFJ<JJJJJJJJJ<JJFFJJFJ7JJJFFJJJJJJJJJJFJJ7JJJFJJ<JJJJJJFFJJJJ<JJJJJFJJJJ<JJJJ<JJJJJ<J<JF7AJJJJJ7FJF7JJJJJ<FJJFJJJJJFJJJJJJJFJJJJJJJ<	82	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,	7JFJJJFJJJJJJJJJJJJJFJJJJFA7JFJFJFJAJJJF<JJJJJJJJFJJFFJJJFFJJJFFAJJJJJJFJAJFJJ7JJJ	134	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJFJFJJFFJJJFJJFJJ<JFJAJFJJAJJJJJJFJJFFJFFJJAJJJJFJFJJJJFJJFJJAJJJFJJFJFFJF<JJAFFAA7JJFFJF7JJFJJJJFJJJ<FJJAJAJJFJAAJJ7JJJJAJJFJJFJF	82	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,	JJJJJJF77AJJFFJJJJAJFJJJJFJJFJAJFFJJJJJJJJJFJJJFFFJJJFJJJJJFJJJJ7JFJJFJFJJJFJFAJJJ	173	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJFJJAJJJAJJJJJ<JJFJAJFJJJFJJJJ<JJFJJJJJJJJJJFJJJJAJFFJJFJJJJ7FJFJJJJJJJJJJJJJJJAJFJJAJJJJFJJJJJJJJJ<JJJJJJFJJJFJJJJJAJJJ7JJJJ7FJJJJJJF<JJJJ7JJJJJJAJJJJJJJJJAJJJJJJJ<JJJJF<
-Chromosome7	209353124	C	154	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JAJJJJJJJFJJFJJJJJJAJJJJJJJJFJJJJFJJJJJJ7JFJJJ<JJJFJJJJJJJJJJJJJJJJJJJJJJJFJ<JJAJJJJ<JJJJJJJJJJJJJ<JJJJJJFAJFAFJJAJJFJJJJJJJJJAJJAJJJJJJJJJJFJJJJAJJJJAJJ<	85	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	<JJJJJJJJAJJJJJJJJJJJJJJJJJJFJAJJJJJAJJJ<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJAJJJJJJ	134	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	AJJJJJJJJ<JJJJJJJJFJ<JJJJJJJJJJJJJJJJJ7JJJJJJJFJJJJJAJJJFJJJJJJJJJJJJJJJJJJAJFJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJ7JJJJJJJFJJJJJJJJJJJJJF	84	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJAJJFAJFJJFFFJJJJ7JJJJJJJJJFJJJJJJJJJJJJJJFJJJJJFJJJJJJJJJFJJJJJFFJJJ<JAJJJJJJJJJJ	174	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t	FJJFJJJJJJJJJJJFJJJJJJAFJJJJ<JJJJFJJFJJFJJJJJJJJJFJJJJF<JJ<JJJJFJJJJJJJFJJJJJJFJAFJJJJJJJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJAJJJJJJJJ<JJJJJJJJJJJ7JFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJ<J
-Chromosome7	209353129	T	153	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,a,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJJJJJJJJJJJJJJJJFFJJJJJJJJJAJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFAJJJJJAJJJJJAJJAJJAJJJJJJJJJFJJ7JJJJJJAJJJ<JFJJJJJJJJJJ	84	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJJJJJJJJJJJJJJFJJJJJJJJJJFJJJJJJJJJJJJJJJAJJFJJJJFJFJJJJJJJJJ<JJJJJFJJJJFJF<JJ<JJJ	131	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJAJJJJJJAJJJJJAJJJJJJJJJ<JJJJJJJJJJJJJJJJJJFFJFJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJ	81	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,	FJJ<JJJ<JFJJJJJJJJJFJJJJJJJJJJJFJJJJJJJJAJJJJJJJJFJJJJJJJJJJJJJJJFJJFJFJFJAJJJJJJ	175	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	AJJFJJ<JJJFJJJJJJJFJJJJFFJJJJJJJJFJJJJFJJJJJJJJ<JJJJJ<J<JJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJJAFJFJAJJJJJJJJJJJAJJFJ<JJJJJJJJJJJJJJ7F
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-Chromosome7	209477660	A	0	*	*	1	.	s	0	*	*	1	G	J	3	..G	JJJ
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-Chromosome7	210698453	C	3	T..	AJJ	1	.	J	1	T	<	2	,A	e<	0	*	*
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-Chromosome7	251078580	C	2	A.	os	2	AA	ko	0	*	*	0	*	*	1	.	M
-Chromosome7	251078602	A	2	G.	os	2	GG	sM	0	*	*	0	*	*	1	,	7
-Chromosome7	251078622	G	2	A.	Fs	2	AA	Vf	0	*	*	0	*	*	1	,	J
-Chromosome7	251078629	T	2	.g	oJ	2	gg	JF	0	*	*	0	*	*	1	,	F
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-Chromosome7	251078674	A	2	.g	sJ	2	gg	JJ	0	*	*	0	*	*	1	,	F
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-Chromosome7	251078687	C	2	.*	o5	2	**	55	0	*	*	0	*	*	1	t	J
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-Chromosome7	251078694	C	2	.t	sJ	2	tt	JJ	0	*	*	0	*	*	1	,	J
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-Chromosome7	251371272	A	1	.	J	0	*	*	1	G	J	1	.-1C	J	0	*	*
-Chromosome7	251481271	G	2	t,	<J	0	*	*	1	t	J	1	,	J	0	*	*
-Chromosome7	251544395	C	3	.AT	JJF	5	..TT.	JJJJ7	2	T.	JJ	3	.T.	JJF	0	*	*
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-Chromosome7	251749053	T	0	*	*	3	..C	JJJ	1	C	J	1	.	J	0	*	*
-Chromosome7	251921126	G	2	,-4agct,-4agct	;;	0	*	*	0	*	*	1	,-4agct	;	2	.-4AGCT,-4agct	U;
-Chromosome7	251930527	A	5	,,g,,	JJJAJ	3	,,,	JJJ	1	g	J	2	g,	JJ	2	g,	JJ
-Chromosome7	251930534	T	5	,-1c,-1c,-1c,-1c,-1c	JJJJJ	3	,-1c,-1c,-1c	JJJ	1	,-1c	J	2	,-1c,-1c	JJ	2	,-1c,-1c	JJ
-Chromosome7	252085719	G	1	T	J	3	...	JJJ	2	.*	J5	0	*	*	0	*	*
-Chromosome7	252215512	T	1	a	J	2	,,	JJ	5	,,,,a	JJJAJ	5	,a,a,	JJJJJ	6	a,,,,a	JJJJJF
-Chromosome7	252215946	G	9	T......T.	JFJJJJJJJ	6	..T...	JJJJJJ	16	......T....T....	AJJFJJJJJFJJJJJJ	6	...T.T	JJJJJJ	21	.....T...............	JJJJJJJJJJJJJJJJFJFFJ
-Chromosome7	252215992	C	10	..-1A...+2AA....+1A^:.	JJJJJJJJJA	6	.+2AA....+1A.+1A	JJJJJJ	17	.......+1A..........+2AA	JJJJJJJJJJJJJJJJJ	8	........	JJJJJJJF	21	..........+1A........+1A.+1A..+1A	JJJJJJJJJJJJJJJJJJJJJ
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-Chromosome7	252216589	C	15	A......AA..AA..	JJJJJJJJJJJJJJJ	21	.A.A.A.A.....AA......	JJJJJJJJJJJJJoJJJJJJJ	33	.AA...A.....A....AA.A.A.A....A..A	JFJFJJFFJFFFJJJFJJJJJJJJJJJJFJJJJ	26	....AA......A.A.A....A.AAA	JJJJJFJJJJJJJJJJJJJJJ7JJ<C	21	..A..A..AA...A.A.....	JJJJJJJJJJJFJJJJFJJAJ
-Chromosome7	252216590	C	16	TT......TTT.TT..	JJJJJ7JJJJJJJJJJ	21	.T.T.T.TT....TT......	JJJJJJJJJAJJJsJJJJJJJ	33	TTT...T.T...T...TT.T.T.T....T..TT	JFJFJJJJJ<FAJJJJFJJJJJJJJJJJJJJJ7	26	....TT.....TT.TTTT...T.TTT	JJJJJFJJJJJJJJJFJJJJJ7JJ<C	21	..T..T..TTT..TTT.....	JJJJJJJJJJJJJJJJFJJJJ
-Chromosome7	252216753	G	15	,,,,,,,tt,tt,t,	JFJJJJJJJJJJJJJ	19	t,,t,t,,c,,,,t,,,,,	JJFJJ<JJFJ<JJJJJJJJ	34	t,,,,,t,,,t,,,t,t,,,,tttt,t,t,,,t,	JJJJJJJAAJJJFJFJJJFJ<JJJJJJJJJJFJJ	26	,,t,,,,tt,,,,,t,t,,,,t,ttT	JJJJFJJFAFJJJJJJJJJJJ7JJJJ	21	,,,t,,t,,tc,,,,,t,,,T	FJJJJAJJJJJJJJ<JJFJJJ
-Chromosome7	252217337	A	1	.	s	0	*	*	1	T	J	2	.T	<J	1	G	J
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-Chromosome7	252334901	C	0	*	*	2	..	ss	3	.A.	sss	0	*	*	1	A	o
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-Chromosome7	252574538	C	1	,	F	2	,t	JJ	1	t	J	2	t,	F7	4	,,t,	JJAJ
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-Chromosome7	252574558	A	0	*	*	2	,g	JJ	1	g	J	2	g,	JJ	3	,,,	JJJ
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-Chromosome7	252991379	G	0	*	*	0	*	*	1	.	>	1	.-1T	i	1	.-1T	U
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-Chromosome7	252991486	C	1	,	7	0	*	*	2	.a	sF	3	gg,	J:J	1	g	J
-Chromosome7	252997666	C	0	*	*	0	*	*	1	.	o	2	,+1t.+1T	JA	2	.+1T.	ss
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-Chromosome7	253135212	A	0	*	*	1	.	J	0	*	*	1	G	J	2	.G	J7
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-Chromosome7	253266693	T	0	*	*	1	.-2GC	;	0	*	*	1	.	J	1	.-2GC	;
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-Chromosome7	253559515	C	39	.............T.............TT.T........	JJJJJFJFJJFJJJJJFJJJJJJJJJJJFJJJJJJJJJJ	41	....T....................................	JJJAJJJJAJJJJJJAJJJJJJJJJJJJJJJAAJJJJJFJJ	48	........T...T..........................T........	AJJJJJ<JJJFJJJJJJJJJJFFJJJJAJJJJJJJJJJJJJJJJJJFF	38	.......T..............................	J<JJ<JJJJJJ<JJJJJJJJJFJJJJJJJ<JJJJJFJJ	66	....................................T..T......T......T..T.........	sJJJJJJJJJJ<JJJJFFFFJJJJJJJJJJJJJJFJJJJJJJJJJJFJJFAJJJJJJJJJJJJAJJ
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-Chromosome7	253559539	G	40	.......................T................	JJAJJJJJJJJJ<JJJJJJFJJJJJJJJJJJJJJJAJAFJ	42	.....................A....................	JJFJJFJJ<JJ<AJJJFAJJJFJJJJJJJFFJJFJJJFJJJJ	48	..............................................A^7.	JJJJJJJFJJJAJ<JJJFJJJFJJ7JJJJJ<JJFJJJJJJJJJJJAJA	38	....................................A.	F<JAJJJJAJJFJFFFJJJ<JJJJJJJFJJJJF<JJJJ	67	...A............................A...A...........................A.A	oJFJJFFJJJ7JJAJAFJJJJJJJJJFJAJJ7FJJJJJJJJJJFJJ<<JJFJJF7J<FJJJJJJJ<J
-Chromosome7	253559705	C	9	.$.,.,,,.+1A.-1A	EsJJJJFJJ	14	,,+1a,+1a,,,+1t,,,,,,,.-1A	JJJJJJJJJJJJ<J	5	,$,,..	AJJFs	14	..,,,,,,.,.,,+1a,+1a	FJJJJJJJJ<JJJJ	8	,,.,.A.+1A.+1A	JJJFJJJJ
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-Chromosome7	253559899	C	41	,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,	JFJFJJFJAJAJAJFJJJJJFJFJJJJFJFJJJJJAJ<<JJ	28	,,,,,,t,,,,,,,,,,,,,,,,,,,,,	JJJJ<JJFJFJJJJJJJJJJJJJJJJJJ	47	,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJFJJAJJJJF7JJFJJJ7JJJJFJJJJJFJFJJJJJJJJFJJJ<JJ	32	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	J<JJJJJJJJAJA7FJJ7JJ7FJJJJJFJJJJ	65	,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJJFJFJJFJJFJJJAJFJJJJJFJFJJJ7JJJJJJJJ7JFJJJJJJJAJJJFJJJJJJ
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-Chromosome7	253560054	C	11	....T.....T	JJJJJJFAFJJ	11	....TTT....	JJJsAJJJJJJ	25	T..T.....T...TTT......T..	JJJJJJFJWJJJJJJJsJJJJJJJJ	13	.T..*..T...T.	JJJ\FsJAJFJJs	26	T...T.T.T...TTT..A...T.TT.	JJJJJJJJJJJJJJJJJJJFJ<JJJJ
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-Chromosome7	253661866	C	0	*	*	0	*	*	2	TT	so	3	,,,	JJJ	2	T,	sJ
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-Chromosome7	253870504	A	1	.-8TCGAATGC	:	1	.-8TCGAATGC	:	0	*	*	1	.	A	3	...-8TCGAATGC	FJ:
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-Chromosome7	254191155	T	1	,-1c	J	1	,-1c	A	0	*	*	1	,-1c	J	0	*	*
-Chromosome7	254245703	C	0	*	*	0	*	*	1	.	J	1	T	J	2	.T	JJ
-Chromosome7	254256994	G	1	,-2aa	J	2	,-2aa,-2aa	JJ	1	,	J	0	*	*	1	,-2aa	J
-Chromosome7	254257062	G	1	.-1A	J	1	.-1A	J	1	,	J	1	.-1A	J	0	*	*
-Chromosome7	254260434	A	1	.-3GCT	J	2	.-3GCT.-3GCT	JJ	7	.-3GCT.-3GCT.-3GCT.-3GCT.-3GCT.-3GCT.-3GCT	JJJJJJJ	4	.-3GCT.-3GCT.-3GCT.-3GCT	JJJJ	2	.-3GCT.-3GCT	JJ
-Chromosome7	254262845	T	0	*	*	0	*	*	1	c	J	2	,,	JJ	2	,c	JJ
-Chromosome7	254290328	T	1	.	J	1	.-1G	J	0	*	*	0	*	*	2	,.-1G	oJ
-Chromosome7	254428174	G	0	*	*	2	A.	JJ	1	A	J	0	*	*	1	.	J
-Chromosome7	254428446	A	0	*	*	2	,g	JJ	1	g	J	0	*	*	1	,	J
-Chromosome7	254899978	A	1	.-14ATGCGATTGAGTTG	8	1	,	J	0	*	*	0	*	*	1	.-14ATGCGATTGAGTTG	9
-Chromosome7	254900052	T	1	.-1A	s	1	,	A	0	*	*	0	*	*	1	.-1A	s
-Chromosome7	254909044	A	1	.	J	2	G.	JJ	0	*	*	1	G	J	3	..G	JJJ
-Chromosome7	254909087	C	1	.	F	2	A.	JF	0	*	*	2	AA	ss	3	.AA	<J7
-Chromosome7	254909099	G	1	.	F	2	C.	JJ	0	*	*	2	CC	ss	3	.CC	FJJ
-Chromosome7	254909107	T	1	.	J	2	C.	JF	0	*	*	2	CC	oo	3	.CC	<JJ
-Chromosome7	254909119	A	1	.	J	2	G.	^F	0	*	*	2	GG	os	3	..G	AF7
-Chromosome7	254924188	A	1	g	J	2	g.	JJ	0	*	*	2	g,	J7	1	.	F
-Chromosome7	255230231	G	0	*	*	1	.-2GA	I	1	.-2GA	I	0	*	*	1	.-2GA	I
-Chromosome7	255266781	C	0	*	*	0	*	*	1	G	J	3	GG.	JMn	1	.	n
-Chromosome7	255326719	G	1	A	F	1	.	J	2	A.	J<	0	*	*	0	*	*
-Chromosome7	255343423	G	1	.	e	2	.c	s>	0	*	*	1	c	J	0	*	*
-Chromosome7	255343438	C	1	T	s	2	T,	sF	0	*	*	1	,	J	0	*	*
-Chromosome7	255343450	C	1	.	s	2	.g	sJ	0	*	*	1	g	J	0	*	*
-Chromosome7	255343453	G	1	.	s	2	.c	sF	0	*	*	1	c	J	0	*	*
-Chromosome7	255343464	C	1	T	o	2	T,	sJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343468	T	1	.	o	2	.c	sJ	0	*	*	1	c	J	0	*	*
-Chromosome7	255343492	A	1	g	J	2	,g	AJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343504	A	1	g	J	2	,g	JJ	0	*	*	1	,	<	0	*	*
-Chromosome7	255343528	A	1	g	J	2	,g	FJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343531	G	1	a	J	2	,a	JJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343534	A	1	g	J	2	,g	JJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343551	C	1	t	A	2	,t	JJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255348081	A	1	T	J	0	*	*	1	.	J	0	*	*	3	..G	JJJ
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-Chromosome7	255348107	G	1	.	J	0	*	*	1	A	J	0	*	*	3	A..	JJJ
-Chromosome7	255348148	T	1	.	o	0	*	*	1	.-1G	R	0	*	*	3	.-1G..	ooj
-Chromosome7	255348171	G	1	.	o	0	*	*	1	C	k	0	*	*	3	C..	kss
-Chromosome7	255348197	C	1	.	s	0	*	*	1	A	`	0	*	*	3	A..	sse
-Chromosome7	255348234	G	1	A	T	0	*	*	1	t	J	0	*	*	3	t,t	JJJ
-Chromosome7	255348272	A	1	,	J	0	*	*	1	t	F	0	*	*	3	t,,	JJJ
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-Chromosome7	255740117	A	0	*	*	1	G	s	2	.G	ss	1	.	s	0	*	*
-Chromosome7	255740130	C	0	*	*	1	.	o	2	T.	ss	1	A	s	0	*	*
-Chromosome7	255817351	T	2	..	JJ	0	*	*	0	*	*	2	C.	<J	1	C	J
-Chromosome7	255858923	G	0	*	*	2	,,	JJ	7	a,,,,,,	JJFJJJJ	3	,,a	AJJ	4	,,,a	JJJJ
-Chromosome7	255876600	T	1	C	s	1	.	s	2	C.	os	2	.C	ss	2	C.	os
-Chromosome7	256429474	A	0	*	*	1	.	J	2	.G	JJ	0	*	*	1	G	J
-Chromosome7	256429497	T	0	*	*	1	.	J	2	.C	<U	0	*	*	1	C	V
-Chromosome7	256429519	C	0	*	*	1	.	J	2	.A	Fs	0	*	*	1	A	s
-Chromosome7	256429525	C	0	*	*	1	.	F	2	.A	Jk	0	*	*	1	A	o
-Chromosome7	256429530	T	0	*	*	1	.	J	2	.C	Js	0	*	*	1	C	s
-Chromosome7	256429531	C	0	*	*	1	.	J	2	.T	Js	0	*	*	1	T	s
-Chromosome7	256452248	T	0	*	*	1	,	F	2	,c	JJ	0	*	*	2	cc	FJ
-Chromosome7	256674199	A	0	*	*	3	,gg	JJJ	1	g	J	4	,gg,	JFJJ	1	,	J
-Chromosome7	256724978	T	0	*	*	0	*	*	1	,-1c	?	3	.,-1c.-1C	7GA	1	.	J
-Chromosome7	256725346	T	0	*	*	1	,	F	0	*	*	2	,a	JF	2	A,	oF
-Chromosome7	256728403	T	0	*	*	0	*	*	1	.	s	1	A	J	2	.A	JJ
-Chromosome7	256830964	T	0	*	*	0	*	*	2	.-1G.	JJ	1	.	J	1	.-1G	J
-Chromosome7	256831003	T	0	*	*	0	*	*	2	C.	JJ	1	.	<	1	C	J
-Chromosome7	256831040	G	0	*	*	0	*	*	2	.-12CGATTTGGGGGA.	Js	1	.	J	1	.-12CGATTTGGGGGA	J
-Chromosome7	256848198	G	1	,-1t	F	0	*	*	1	,-1t	J	1	.	<	0	*	*
-Chromosome7	256852046	T	0	*	*	1	A	J	2	.C	JJ	0	*	*	1	.	J
-Chromosome7	256878006	G	2	AA	JJ	1	.	J	0	*	*	0	*	*	2	.A	JJ
-Chromosome7	256878018	G	2	A.	JJ	1	.	J	0	*	*	0	*	*	2	.A	JJ
-Chromosome7	256878060	G	2	A.	JJ	1	.	J	0	*	*	0	*	*	2	.T	FJ
-Chromosome7	256878189	T	2	a,	JJ	1	,	F	0	*	*	0	*	*	1	a	F
-Chromosome7	257114474	A	1	.-3GAC	9	1	.	J	2	..-3GAC	J7	0	*	*	2	.-3GAC.	9J
-Chromosome7	257123327	G	0	*	*	3	A..	FJJ	0	*	*	1	.	J	1	A	J
-Chromosome7	257167771	C	0	*	*	0	*	*	1	.	s	1	T	s	2	.T	sV
-Chromosome7	257320032	A	0	*	*	1	G	s	2	.G	`e	1	.	F	0	*	*
-Chromosome7	257401572	C	0	*	*	2	t,	F7	3	,t,	JAJ	1	t	J	0	*	*
-Chromosome7	257401583	T	0	*	*	2	c,	FJ	2	,,	J7	1	c	F	0	*	*
-Chromosome7	257440112	G	1	,-30tctgggccaccaatttaagccatgcatcat	5	0	*	*	1	,	J	1	t	J	0	*	*
-Chromosome7	257445151	G	1	,-1a	J	0	*	*	2	,a	JF	0	*	*	1	,	J
-Chromosome7	257483171	A	1	g	J	0	*	*	4	g,,,	JJJJ	3	,,g	JJJ	3	,,,	JJJ
-Chromosome7	257629558	C	1	.-3TTA	s	0	*	*	2	..	Js	0	*	*	1	.-3TTA	o
-Chromosome7	257629688	A	1	,-1t	J	0	*	*	2	,,	JJ	0	*	*	1	,-1t	J
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-Chromosome7	257659822	G	0	*	*	0	*	*	1	.-16GTACTCTCTGCACCTC	6	2	.-16GTACTCTCTGCACCTC.-16GTACTCTCTGCACCTC	s6	1	.	J
-Chromosome7	257686469	C	2	GG	JJ	0	*	*	0	*	*	2	.G	FJ	1	.	J
-Chromosome7	257686679	G	2	t,	JJ	0	*	*	0	*	*	2	t,	JJ	1	,	J
-Chromosome7	257686694	A	2	cc	JJ	0	*	*	0	*	*	2	c,	JJ	1	,	J
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-Chromosome7	257778951	G	0	*	*	2	,,	JF	0	*	*	1	.-3TAC	s	1	.-3TAC	J
-Chromosome7	257812157	G	1	,	J	2	,t	JJ	0	*	*	1	t	J	0	*	*
-Chromosome7	257939100	T	0	*	*	2	..	ss	3	C$,,	JJJ	1	a	J	0	*	*
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-Chromosome7	257957276	G	0	*	*	2	a,	7A	1	a	J	0	*	*	1	,	A
-Chromosome7	258112294	G	0	*	*	3	,t.	JJs	0	*	*	1	T	s	4	,,,,	JJJF
-Chromosome7	258122794	G	10	..TT......	JJJJJJJJJJ	7	T......	JJFFJJJ	11	T..........	JJJJJJJJJJJ	5	.....	FJAJJ	7	......T	JJJJJJJ
-Chromosome7	258122956	A	9	,,gg,,,gg	JFAJJAJJA	6	gg,,gg	JJJAJJ	11	,,ggggggggg	JJJJJJ<JFFF	5	g,gg,	FJFJJ	7	gg,ggg,	JJJAJJJ
-Chromosome7	258276844	A	0	*	*	0	*	*	2	GG	JJ	4	...G	sFJJ	1	.	s
-Chromosome7	258276930	G	0	*	*	1	,	F	2	,a	FJ	4	,.,a	JsJJ	0	*	*
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-Chromosome7	258295349	A	0	*	*	1	G	\	2	G.	J7	0	*	*	1	.	<
-Chromosome7	258331069	C	2	T.	JJ	1	T	J	0	*	*	0	*	*	2	T.	JJ
-Chromosome7	258331102	C	2	t,	>J	1	,	J	0	*	*	0	*	*	2	t,	5A
-Chromosome7	258331138	T	2	g,	JJ	1	,	<	0	*	*	0	*	*	2	g,	JF
-Chromosome7	258338969	T	1	.-7TGCGGTC	:	0	*	*	0	*	*	1	.-7TGCGGTC	:	2	.-7TGCGGTC.-7TGCGGTC	::
-Chromosome7	258371706	G	0	*	*	1	.-1A	J	1	.-1A	F	1	.-1A	J	0	*	*
-Chromosome7	258587112	A	7	G,,,,,,	jJJJFJJ	4	.,,,	sJJJ	13	..G.G,,,,,,,,	jRjooJJJJJJJJ	13	G..G.G,,,,,,,	sR`sssJJJJJJJ	12	.G...,,,,,,,	`ssssJ<JJJJA
-Chromosome7	258589562	T	0	*	*	2	.c	oJ	2	,,	JJ	1	c	J	0	*	*
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-Chromosome7	258702215	A	0	*	*	3	.G.	7FJ	0	*	*	1	.	F	1	G	J
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-Chromosome7	258722820	G	0	*	*	3	.,A	ksF	0	*	*	4	t..,	JsAJ	1	.	o
-Chromosome7	258728719	G	0	*	*	0	*	*	3	CC.	sss	3	.C.	sRs	1	.	s
-Chromosome7	258728764	C	0	*	*	0	*	*	3	aaa	JJF	3	,a,	JFJ	1	,	J
-Chromosome7	258728793	T	0	*	*	0	*	*	3	ccc	CCJ	3	cc,	CFJ	1	,	J
-Chromosome7	258728794	T	0	*	*	0	*	*	3	ccc	CCA	3	ccg	CAJ	1	g	J
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-Chromosome7	258930042	C	1	.-1G	J	1	.-1G	J	0	*	*	1	.-1G	F	1	.-1G	J
-Chromosome7	258930893	G	2	a,	JJ	1	c	J	0	*	*	1	,	J	0	*	*
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-Chromosome7	301181431	G	16	,,,,,,,,,,,,,,,,	JJFFJJJJJJJJJJJA	12	,,,a,,,,,,,,	JJJJJJJJJJJJ	13	a,,,,,,,,,,,,	9JJJFJJJJJJJJ	12	,,,,,a,,,a,,	JFJJJJJJJJJJ	20	,,,,,a,,,,,,,,,,,,,,	JJFJJJFJJJFJJJJJJJJJ
-Chromosome7	301188415	G	2	a,	A7	0	*	*	0	*	*	1	,	J	1	a	F
-Chromosome7	301212284	C	2	t.	FJ	2	T.	jF	0	*	*	1	T	s	1	.	A
-Chromosome7	301212350	C	2	t.	JJ	2	t.	JJ	0	*	*	1	.	s	0	*	*
-Chromosome7	301245506	G	0	*	*	1	A	J	2	.A	ns	1	.	s	0	*	*
-Chromosome7	301439989	T	0	*	*	3	CC.	sss	1	c	J	0	*	*	2	Ca	oJ
-Chromosome7	301439994	A	0	*	*	3	.G.	sss	1	,	J	0	*	*	2	Gg	sJ
-Chromosome7	301440003	G	0	*	*	3	..A	sss	1	a	J	0	*	*	2	.,	sJ
-Chromosome7	301440014	A	0	*	*	3	GGT	sss	1	g	J	0	*	*	2	.g	jJ
-Chromosome7	301440031	C	0	*	*	3	G..	ss[	1	,	J	0	*	*	2	,t	JJ
-Chromosome7	301440039	C	0	*	*	3	..t	ssJ	1	,	J	0	*	*	2	,t	JJ
-Chromosome7	301497254	C	0	*	*	2	A.	JJ	0	*	*	3	TTT	JFJ	3	...	Fsj
-Chromosome7	301497580	T	0	*	*	2	,c	JJ	0	*	*	3	aaa	JJJ	1	,	F
-Chromosome7	301498098	A	2	cc	<A	0	*	*	0	*	*	4	C...	s99A	1	,$	>
-Chromosome7	301524162	C	0	*	*	2	T.	JJ	0	*	*	1	.	J	2	.T	JJ
-Chromosome7	301524325	G	0	*	*	2	t,	FJ	0	*	*	1	,	J	2	,t	JF
-Chromosome7	301548618	C	0	*	*	1	,	F	1	T	s	3	,.t	JsJ	0	*	*
-Chromosome7	301548630	A	0	*	*	1	,	F	1	G	s	2	G,	sJ	0	*	*
-Chromosome7	301606890	T	1	,	F	0	*	*	1	a	F	0	*	*	2	,a	JF
-Chromosome7	301606926	C	1	,-1t	J	0	*	*	1	,-1t	7	0	*	*	2	,-1t,-1t	JJ
-Chromosome7	301654611	G	0	*	*	0	*	*	2	..	Js	3	A..	JsJ	2	A.	7J
-Chromosome7	301765743	A	2	,,-1t	JF	1	t	J	0	*	*	0	*	*	1	,	J
-Chromosome7	301775567	T	1	.-1G	o	0	*	*	1	,-1g	J	3	.,-1g,	sAJ	0	*	*
-Chromosome7	301775578	C	2	.+1T,+1t	JJ	0	*	*	1	,+1t	J	3	.,+1t,	sAF	0	*	*
-Chromosome7	301775584	C	1	.-4GCTA	M	0	*	*	1	,-4gcta	7	2	.,-4gcta	S;	0	*	*
-Chromosome7	301790232	A	1	c	J	0	*	*	0	*	*	1	g	J	2	cg	JJ
-Chromosome7	301807681	C	1	,+1t	J	0	*	*	2	.+1T,+1t	5J	1	t	J	0	*	*
-Chromosome7	301839907	T	2	.C	JF	1	C	J	0	*	*	1	.	J	0	*	*
-Chromosome7	301840060	T	2	g,	JJ	1	,	J	0	*	*	1	g	J	0	*	*
-Chromosome7	301902772	G	1	.-2AA	A	0	*	*	1	.-1A	J	1	.-1A	s	1	.	J
-Chromosome7	302047409	C	0	*	*	2	,T	Jj	0	*	*	1	.	s	1	t	J
-Chromosome7	302051155	C	1	.+2AA	o	2	.+2AG.+2AG	JJ	2	.+2AG.+1A	JJ	0	*	*	0	*	*
-Chromosome7	302051181	A	2	Cc	sJ	2	..	ss	2	.C	sj	0	*	*	0	*	*
-Chromosome7	302051230	C	2	Aa	sJ	2	..	ss	2	.A	so	0	*	*	0	*	*
-Chromosome7	302051262	C	2	tt	JJ	2	,,	JJ	2	,t	JF	0	*	*	0	*	*
-Chromosome7	302051352	G	2	.A	JJ	0	*	*	0	*	*	2	.A	JJ	1	.	J
-Chromosome7	302051365	T	2	.A	JJ	0	*	*	0	*	*	2	.A	JJ	1	.	J
-Chromosome7	302051370	C	2	.G	JJ	0	*	*	0	*	*	2	TG	JJ	1	.	J
-Chromosome7	302051375	G	2	.C	JF	0	*	*	0	*	*	2	.C	JJ	1	.	J
-Chromosome7	302051388	G	1	A	J	0	*	*	0	*	*	2	A.	FJ	1	.	J
-Chromosome7	302051427	A	3	.T.	JJJ	0	*	*	0	*	*	2	.T	JJ	1	.	J
-Chromosome7	302051559	T	3	.,g	oJ7	0	*	*	0	*	*	2	g,	JJ	1	,	J
-Chromosome7	302053781	T	2	..	F7	0	*	*	2	.C	JJ	0	*	*	1	C	J
-Chromosome7	302060228	A	1	,-11gggccgggctg	J	1	.	9	0	*	*	1	,-11gggccgggctg	J	0	*	*
-Chromosome7	302061974	G	2	.-1T.-1T	JJ	1	.-1T	J	0	*	*	2	..-1T	JJ	1	.-1T	J
-Chromosome7	302066875	T	3	.$,C	jJs	1	C	J	0	*	*	1	.	e	0	*	*
-Chromosome7	302067145	G	1	.	F	1	T	<	0	*	*	0	*	*	2	.T	FJ
-Chromosome7	302073124	C	0	*	*	1	,-4taag	J	1	G	s	0	*	*	1	,	J
-Chromosome7	302073163	G	0	*	*	1	a	J	2	.+3TCA,	oJ	0	*	*	1	,	J
-Chromosome7	302073191	A	0	*	*	1	,	J	2	.g	sJ	1	g	A	0	*	*
-Chromosome7	302100175	C	0	*	*	1	.-4GCTA	E	1	.-4GCTA	5	0	*	*	1	.-4GCTA	H
-Chromosome7	302178668	T	0	*	*	1	.-3GAA	J	1	.-3GAA	J	0	*	*	1	.-3GAA	J
-Chromosome7	302198727	A	0	*	*	2	CC	JJ	4	C...	JAAA	6	CC....	FJAAAA	2	..	AA
-Chromosome7	302225172	T	0	*	*	0	*	*	3	G,,	sJJ	1	G	s	1	,	J
-Chromosome7	302232479	T	1	c	J	0	*	*	1	.	s	0	*	*	2	c,	JA
-Chromosome7	302267865	A	1	,-2ct	J	0	*	*	0	*	*	1	,-2ct	J	1	,	<
-Chromosome7	302307654	G	1	A	6	2	..	JJ	0	*	*	0	*	*	2	.A	s6
-Chromosome7	302517746	G	0	*	*	2	.-3CCC.-3CCC	JJ	1	.-3CCC	J	0	*	*	4	...-3CCC.-3CCC	J<JJ
-Chromosome7	302517763	A	0	*	*	2	.-3GCT.-3GCT	JJ	1	.-3GCT	J	0	*	*	3	.$.-3GCT.-3GCT	DJF
-Chromosome7	302517777	A	0	*	*	2	.+1T.+1T	>>	1	.+1T	>	0	*	*	2	.+1T.+1T	><
-Chromosome7	302517810	T	0	*	*	2	CC	os	2	C,	sJ	0	*	*	4	CC,,	okJJ
-Chromosome7	302517811	A	0	*	*	2	TT	so	2	Tg	sJ	0	*	*	4	TTgg	s`JJ
-Chromosome7	302587874	C	5	T....	JJ<oA	8	..TT.TGT	JJAJJFsJ	6	T.T..T	JFJ<F<	3	...	JJJ	3	.TT	J<J
-Chromosome7	302751881	T	1	.	J	2	.A	JJ	3	..C	7oJ	0	*	*	2	.C	7J
-Chromosome7	302864739	T	0	*	*	4	,$,,c	AJJJ	1	c	J	0	*	*	1	,	J
-Chromosome7	302864755	G	0	*	*	3	,,a	JJJ	1	a	J	0	*	*	1	,	J
-Chromosome7	302951458	A	3	,,,	J7J	3	g,,	JFJ	4	g,,,	JJJJ	7	,,,g,,g	JJA7FJJ	9	,,,,,,g,,	JJJJJJJJJ
-Chromosome7	302951530	C	3	a,,	JJJ	3	a,,	JJJ	4	a,,,	JJJJ	7	,,,a,,a	JJJJJJJ	8	,,a,,,a,	JJJJJJJJ
-Chromosome7	303014148	T	1	g	7	1	,	J	0	*	*	2	,G	JF	0	*	*
-Chromosome7	303084658	G	0	*	*	0	*	*	2	.A	JJ	1	.	J	1	A	J
-Chromosome7	303084739	T	0	*	*	0	*	*	2	.G	os	1	.	s	1	G	J
-Chromosome7	303153086	C	1	,-2at	J	0	*	*	0	*	*	1	.	s	1	,-2at	J
-Chromosome7	303228613	C	3	...	JJJ	0	*	*	1	T	J	2	T.	JJ	5	.TTTT	AJJJJ
-Chromosome7	303315454	G	0	*	*	2	.c	oJ	1	,	F	1	c	J	0	*	*
-Chromosome7	303315463	A	0	*	*	2	.g	sJ	1	,	J	1	g	J	0	*	*
-Chromosome7	303315489	C	0	*	*	2	,a	JJ	1	,	J	1	a	J	0	*	*
-Chromosome7	303344962	C	1	.	J	1	,-1t	s	1	.-1T	J	0	*	*	1	T	J
-Chromosome7	303561466	C	1	.-1A	F	0	*	*	2	.-1A.+1A	JJ	1	.	F	0	*	*
-Chromosome7	303583749	T	2	G.	JA	1	.	J	1	G	J	0	*	*	0	*	*
-Chromosome7	303592219	C	1	.-1A	s	1	.-1A	s	0	*	*	1	.	e	0	*	*
-Chromosome7	303592248	G	2	.+1A,+1a	JJ	2	.+1A,+1a	JJ	0	*	*	1	.+1A	k	0	*	*
-Chromosome7	303632751	A	0	*	*	1	g	J	1	.	R	0	*	*	2	,g	<J
-Chromosome7	303727273	G	0	*	*	1	A	V	1	.	s	0	*	*	2	A.	\o
-Chromosome7	303737176	C	1	G	F	1	.	<	0	*	*	0	*	*	2	G.	JJ
-Chromosome7	303827664	G	2	T.	J<	1	A	J	1	T	J	2	..	JJ	2	T.	FJ
-Chromosome7	303828066	G	2	,a	JJ	0	*	*	1	a	J	2	,,	JJ	3	aa,	JAJ
-Chromosome7	303828087	T	2	,a	<J	0	*	*	1	a	J	2	,,	JJ	3	aa,	JJJ
-Chromosome7	303828132	C	2	,t	JJ	0	*	*	1	t	J	2	,,	JJ	2	,t	JF
-Chromosome7	303828156	G	2	,t	JJ	0	*	*	1	t	J	2	,,	JJ	2	t,	JF
-Chromosome7	303932204	T	6	,,,,,,	JJJJAJ	0	*	*	0	*	*	2	c,	JJ	3	,,c	<JJ
-Chromosome7	304005867	A	1	G	s	0	*	*	2	.g	ss	0	*	*	1	,	<
-Chromosome7	304030217	G	2	.C	JF	1	.	J	2	.C	s7	0	*	*	0	*	*
-Chromosome7	304074310	A	1	.-3AGC	:	1	.-3AGC	:	2	.-3AGC.-3AGC	SS	0	*	*	0	*	*
-Chromosome7	304147109	C	2	.T	ss	0	*	*	1	t	J	2	t,	JF	2	,,	JJ
-Chromosome7	304148495	G	1	a	J	2	.,	JJ	2	t,	JA	0	*	*	0	*	*
-Chromosome7	304448917	T	1	,	J	0	*	*	1	g	J	3	gg,	JJJ	0	*	*
-Chromosome7	304482703	C	0	*	*	1	.-2CA	;	0	*	*	1	.-2CA	;	1	.-2CA	;
-Chromosome7	304487158	A	2	.G	7J	1	.	F	0	*	*	0	*	*	1	G	J
-Chromosome7	304503657	A	0	*	*	2	.C	Js	1	C	F	1	.	F	0	*	*
-Chromosome7	304503707	A	0	*	*	2	gt	JJ	1	g	J	1	,	J	0	*	*
-Chromosome7	304554563	C	0	*	*	1	,-1a	J	0	*	*	1	.-1A	7	1	.-1A	o
-Chromosome7	304554674	C	1	G	G	0	*	*	0	*	*	1	,	J	2	,G	JJ
-Chromosome7	304554685	G	1	T	J	0	*	*	0	*	*	1	,	J	2	,T	JJ
-Chromosome7	304554686	T	1	C	J	0	*	*	0	*	*	1	a	F	2	aC	JJ
-Chromosome7	304554699	T	1	.-6AAATGA	5	0	*	*	0	*	*	1	,	J	2	,.-6AAATGA	A5
-Chromosome7	304554814	A	2	.t	FJ	0	*	*	0	*	*	1	.	F	1	t	J
-Chromosome7	304554815	G	2	.c	JF	0	*	*	0	*	*	1	.	F	1	c	J
-Chromosome7	304554842	C	2	.a	JJ	0	*	*	0	*	*	1	.	<	1	a	F
-Chromosome7	304554843	A	2	.t	J7	0	*	*	0	*	*	1	.	A	1	t	J
-Chromosome7	304554858	T	2	.c	JF	0	*	*	0	*	*	1	.	J	1	c	J
-Chromosome7	304564618	C	1	t	J	0	*	*	2	t,	JJ	1	,	J	0	*	*
-Chromosome7	304589857	A	2	g,	JJ	0	*	*	1	g	J	3	,,g	JJJ	1	,	J
-Chromosome7	304589866	T	2	c,	JJ	0	*	*	1	c	F	3	,,c	JFJ	1	,	J
-Chromosome7	304589881	T	2	c,	JA	0	*	*	1	c	J	3	,,c	JFJ	1	,	J
-Chromosome7	304592022	C	0	*	*	1	.	s	1	T	k	0	*	*	3	..T	sss
-Chromosome7	304612477	A	1	,-1g	J	1	.-1G	s	0	*	*	1	.-1G	V	0	*	*
-Chromosome7	304612531	G	1	,-5acgcc	;	1	.-5ACGCC	U	0	*	*	1	,	J	0	*	*
-Chromosome7	304676954	A	1	T	7	0	*	*	3	,.T	sFF	2	,.	sa	2	.+1T.	FJ
-Chromosome7	304808634	C	2	T.	JJ	0	*	*	0	*	*	2	..	JJ	2	TT	JJ
-Chromosome7	304890206	T	2	,c	FJ	0	*	*	0	*	*	1	.	o	1	c	J
-Chromosome7	304890237	A	2	,t	AF	0	*	*	0	*	*	1	.	s	1	t	J
-Chromosome7	304891606	T	0	*	*	1	.-1C	G	1	.-1C	G	1	.-1C	G	0	*	*
-Chromosome7	304913861	C	2	.T	JJ	0	*	*	0	*	*	1	.	J	1	T	J
-Chromosome7	304913944	G	2	.A	JJ	0	*	*	0	*	*	1	.	J	1	A	J
-Chromosome7	304913947	G	2	.-1T.-1T	JJ	0	*	*	0	*	*	1	.	J	1	.-1T	J
-Chromosome7	304913966	G	2	.A	JJ	0	*	*	0	*	*	1	.	J	1	A	J
-Chromosome7	304913971	C	2	.T	JF	0	*	*	0	*	*	1	.	J	1	T	J
-Chromosome7	304914151	A	2	,,-1g	FJ	0	*	*	0	*	*	2	.,	oJ	1	,-1g	J
-Chromosome7	304914152	G	2	,*	JJ	0	*	*	0	*	*	2	.,	oJ	1	*	J
-Chromosome7	304914169	G	2	,+1t,+1t	JF	0	*	*	0	*	*	2	,+1t,	7J	1	,+1t	J
-Chromosome7	304914184	A	2	,g	JJ	0	*	*	0	*	*	2	,,	FJ	1	g	J
-Chromosome7	304966252	T	1	C	J	1	.	s	0	*	*	0	*	*	2	C^].	JA
-Chromosome7	304966328	T	1	C	s	1	.	s	0	*	*	0	*	*	2	C.	sj
-Chromosome7	304966354	C	1	t	J	1	,	J	0	*	*	0	*	*	2	.t	sJ
-Chromosome7	304967611	C	0	*	*	2	A.	FJ	1	.	J	0	*	*	1	A	R
-Chromosome7	304967658	C	0	*	*	2	T,	sJ	1	t	A	0	*	*	1	,	J
-Chromosome7	304967663	G	0	*	*	2	A,	sJ	1	a	F	0	*	*	1	,	J
-Chromosome7	305057345	A	1	.	J	2	.G	JJ	0	*	*	0	*	*	1	G	J
-Chromosome7	305122959	C	0	*	*	2	,,	JJ	2	T.	Jo	0	*	*	1	g	9
-Chromosome7	305361973	T	1	.	J	2	C.	AF	0	*	*	0	*	*	1	C	J
-Chromosome7	305563585	A	0	*	*	2	C.	JJ	1	.	s	0	*	*	1	C	J
-Chromosome7	305563645	C	0	*	*	2	T.	AJ	1	.	s	0	*	*	1	T	7
-Chromosome7	305563762	G	0	*	*	2	,t	<F	2	,A	Jo	0	*	*	1	,	J
-Chromosome7	305563957	G	0	*	*	1	.	J	2	.A	JJ	1	A	F	0	*	*
-Chromosome7	305563984	G	0	*	*	2	..-6AGGAGA	J5	3	..-6AGGAGA.	F5F	1	.	A	0	*	*
-Chromosome7	305658748	A	0	*	*	0	*	*	3	G.G	JJJ	1	.	f	2	G.	AJ
-Chromosome7	305658798	A	0	*	*	0	*	*	3	.G.	oas	1	G	f	2	..	es
-Chromosome7	305667525	C	0	*	*	0	*	*	5	..TTT	JJJJJ	3	T..	Jss	1	.	J
-Chromosome7	305667558	T	0	*	*	0	*	*	5	GG...	ossss	3	.GG	sss	1	.	s
-Chromosome7	305667573	C	0	*	*	0	*	*	5	..TTT	oosos	3	T..	soo	1	.	s
-Chromosome7	305667774	C	0	*	*	1	.-3TGT	J	1	.-6TGTTGT	J	0	*	*	1	.+9TGTTGTTGT	J
-Chromosome7	305696043	T	0	*	*	0	*	*	1	g	J	2	g,	JA	1	,	J
-Chromosome7	305808465	G	0	*	*	1	.	J	2	.A	JJ	0	*	*	2	A.	JJ
-Chromosome7	305808492	G	0	*	*	1	C	J	2	..	JJ	0	*	*	2	.C	JJ
-Chromosome7	305808530	G	0	*	*	1	A	J	2	..	JF	0	*	*	2	.A	JJ
-Chromosome7	305808575	G	0	*	*	1	.	J	2	.A	J<	0	*	*	2	A.	<J
-Chromosome7	305808591	C	0	*	*	1	T	J	1	.	J	0	*	*	2	.T	J<
-Chromosome7	305808779	T	0	*	*	1	c	J	2	,,	JF	0	*	*	2	,c	JJ
-Chromosome7	305809526	C	2	TT	JJ	0	*	*	0	*	*	1	.	J	2	.T	J7
-Chromosome7	305809645	C	2	TT	FJ	0	*	*	0	*	*	1	.	J	2	.T	J<
-Chromosome7	305809836	G	2	aa	FF	1	.	e	0	*	*	0	*	*	2	,a	AJ
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-Chromosome7	312096591	G	1	,	J	2	.+2AA,	gJ	2	,+2aa,	DJ	0	*	*	0	*	*
-Chromosome7	312096608	T	1	,	J	3	C,C	sJJ	2	c,	JJ	1	C	W	0	*	*
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-Chromosome7	312096635	A	1	,	J	3	T,T	sJJ	2	t,	JJ	1	T	\	0	*	*
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-Chromosome7	312096645	T	1	,	J	3	C,C	sJs	2	c,	JJ	1	C	e	0	*	*
-Chromosome7	312096657	A	1	,	J	3	.-1G,.-1G	eJg	2	,-1g,	DJ	1	.-1G	O	0	*	*
-Chromosome7	312096658	G	1	,	J	3	*,*	gJg	2	*,	DJ	1	*	b	0	*	*
-Chromosome7	312096666	T	0	*	*	3	G,G	sJs	2	g,	JJ	1	G	s	0	*	*
-Chromosome7	312096671	A	1	,	J	3	C,C	sJo	2	c,	JJ	1	C	e	0	*	*
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-Chromosome7	312125558	G	0	*	*	0	*	*	2	.A	sJ	1	.	J	3	.A.	sJs
-Chromosome7	312225728	A	0	*	*	0	*	*	1	.-1T	F	1	T	J	1	.	F
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-Chromosome7	312333304	T	4	....	JJJJ	14	.......A......	JAJJJJJJJF<JJJ	20	......A..A.....A....	JJJJJJJJJFJJJJJJJAJJ	14	....A.A.......	JJJJJJFJJJJFJJ	21	A...A..............AA	JJJJFFJJFJ<JJJJJJJJJJ
-Chromosome7	312333351	C	4	.A.A	nJJF	13	.............	JJJJJJJJJJJJJ	21	.........A...........	JJJJJJJAJJAJJAFJJJJJJ	14	...G...A.A....	JJJJsJFJJJJJJJ	20	....A.A.A....A......	JJJFJFJJFJFJJAJJFJoJ
-Chromosome7	312333449	T	4	,c,,	<JJA	14	,,,,,,,,,,c,,,	JJAJJJ<JJJJJJJ	21	,,,c,,,,,c,c,,,,,,c,,	JJJJJJJJJJJJJAJJFJJJJ	14	,,c,,,,c,c,,c,	JJJJFJJJJJAFJJ	21	,,,ccc,ccc,,,,c,,c,,,	JJJAJJJJJJJFJJFJJJJ<J
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-Chromosome7	312333499	G	4	,,,,	AJJJ	13	,,a,,,a,,,,,,	JJJJJJJ<JJJJJ	21	,,,,,,,,,,,,,,,,,a,a,	JJJJJJJJFJJJJJJJFJ<JJ	13	,,,,,,,a,,,,,	JJJFJJJJJJJJJ	20	,a,,,,,,,a,,,,,,,,a,	JJ<JFJJJJJ<JJ<JJJJJJ
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-Chromosome7	312338746	A	8	gggg,ggg	JJJJJJJJ	6	,g,ggg	JJJJFJ	4	ggg,	JJJJ	2	gg	JJ	6	,ggggg	JJJJJF
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-Chromosome7	315290130	C	0	*	*	0	*	*	1	.	J	1	.-7ATAACTT	5	1	.-7ATAACTT	5
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-Chromosome7	320169152	G	2	a,	JJ	0	*	*	1	,	F	0	*	*	1	a	F
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-Chromosome7	320169194	T	2	c,	JJ	0	*	*	1	,	J	0	*	*	1	c	J
-Chromosome7	320169197	C	2	,t	JJ	0	*	*	1	t	J	0	*	*	1	,	J
-Chromosome7	320169211	A	2	g,	JJ	0	*	*	1	,	F	0	*	*	1	g	J
-Chromosome7	320169212	T	2	g,	JJ	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome7	320169234	T	2	a,	JJ	0	*	*	1	,	<	0	*	*	1	a	J
-Chromosome7	320169241	G	2	c,	JJ	0	*	*	1	,	F	0	*	*	1	c	J
-Chromosome7	320929447	A	2	..	FF	4	...G	7JJJ	3	G..	JJJ	11	.GG..G...G.	JJJFAJA<JFA	0	*	*
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-Chromosome7	320945536	C	0	*	*	0	*	*	1	T	[	2	.A	os	1	.	s
-Chromosome7	320963873	A	1	,	<	0	*	*	1	,-1c	I	0	*	*	1	,-1c	J
-Chromosome7	320968950	C	1	.-1A	A	0	*	*	1	.	J	1	.-1A	]	0	*	*
-Chromosome7	321028419	T	0	*	*	1	A	J	0	*	*	1	.	s	2	.A	JJ
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-Chromosome7	321206172	C	0	*	*	0	*	*	2	..	JJ	4	..T.	JJJJ	3	.T.	JJJ
-Chromosome7	321221232	C	1	.	J	0	*	*	1	T	s	3	..+1GT	`hR	0	*	*
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-Chromosome7	321230383	T	7	caCCAAA	ssJJJJJ	2	CC	JJ	6	AAA...	JJF<F7	1	A	J	5	,.ACA	RJJJJ
-Chromosome7	321230385	G	7	,a.....	ssJFFJJ	2	.A	FJ	3	...	AJJ	2	.A	<F	5	,.A..	eAJ<J
-Chromosome7	321230412	G	6	,,..A.	ssJAAF	2	..	J<	4	.A..	FF7J	2	.A	AA	5	,.A..	sJJFJ
-Chromosome7	321230461	G	2	.A	F;	2	..	=A	0	*	*	0	*	*	2	.A	F>
-Chromosome7	321230636	G	3	,a,	FD<	0	*	*	2	.a	\7	1	,	J	0	*	*
-Chromosome7	321230767	G	7	,-1a,-1a,-1a,-1a,-1a,-1a,-1a	JFJJJJJ	1	,-1a	J	7	,-1a,-1a,,-1a,,-1a,-1a	JJJJJJF	2	,-1a,-1a	JJ	6	,-1a,-1a,-1a,-1a,-1a,-1a	JJJJJJ
-Chromosome7	321232664	T	4	G.G.	JAJJ	5	GG..G	F9FJJ	5	G.G..	7FJFR	6	.....G	JJJFJJ	5	.G.G.	JJ<JJ
-Chromosome7	321232739	G	4	...c	s`aJ	5	.AC..	RHHVs	4	C..a	ARVF	5	...AA	sVkoW	4	..C,	koAF
-Chromosome7	321232810	T	4	c,,,	JJJJ	3	,,c	JJJ	5	,,c,,	JF7JJ	6	,c,,,,	JJJJJF	5	,,c,a	JJJJJ
-Chromosome7	321235979	G	1	A	A	5	.,..,	sAsss	3	,.A	As>	0	*	*	0	*	*
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-Chromosome7	321754851	G	0	*	*	1	.-4TCCA	s	0	*	*	1	.-4TCCA	s	2	..	so
-Chromosome7	321754900	T	0	*	*	1	.-1A	s	0	*	*	1	.-1A	s	2	..	se
-Chromosome7	321755783	G	0	*	*	1	t	A	0	*	*	1	,	F	1	,-5ggaga	7
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-Chromosome7	322814971	C	4	,,gg	JJJJ	0	*	*	1	a	F	0	*	*	1	,	A
-Chromosome7	322876528	C	1	T	J	0	*	*	1	.	A	0	*	*	2	T.	FJ
-Chromosome7	322876947	C	2	t.	JA	0	*	*	1	.	s	0	*	*	2	tt	JJ
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-Chromosome7	323225101	T	1	C	J	2	CG	Js	1	G	a	0	*	*	0	*	*
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-Chromosome7	332402205	T	1	,-3tag	5	0	*	*	0	*	*	1	,-3tag	6	2	,,	JJ
-Chromosome7	332550713	C	0	*	*	1	,-1a	J	1	,-1a	7	1	,-1a	F	0	*	*
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-Chromosome7	333056643	T	1	,-10gcccagcgag	F	0	*	*	1	.	F	1	,-10gcccagcgag	F	0	*	*
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-Chromosome7	333207949	T	6	....G.	F7JJJJ	0	*	*	2	..	JJ	0	*	*	5	...G.	FAJAJ
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-Chromosome7	333257239	T	1	.	J	0	*	*	1	G	J	2	AG	sI	0	*	*
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-Chromosome7	333295256	T	1	.	J	2	.A	JJ	1	A	7	0	*	*	0	*	*
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-Chromosome7	345545135	G	0	*	*	0	*	*	1	a	H	1	.	o	3	A,,	WFJ
-Chromosome7	345545136	C	0	*	*	0	*	*	1	t	H	1	.	o	3	T,,	oFJ
-Chromosome7	345545166	T	0	*	*	0	*	*	1	c	J	1	.	s	4	C,,c	sFJF
-Chromosome7	345545186	A	0	*	*	0	*	*	1	c	J	1	.	s	4	c,,c	JFJJ
-Chromosome7	345545313	G	0	*	*	4	AA.A	FJJF	0	*	*	1	.	J	1	A	J
-Chromosome7	345545357	C	0	*	*	2	G.	FJ	0	*	*	1	.	o	1	G	J
-Chromosome7	345545371	C	0	*	*	3	T.T	7JJ	0	*	*	1	.	s	1	T	7
-Chromosome7	345545438	T	0	*	*	4	ccc,	J<FJ	0	*	*	1	,	J	1	c	J
-Chromosome7	345545445	G	0	*	*	4	ccc,	JJ<J	0	*	*	1	,	J	1	c	J
-Chromosome7	345545451	C	0	*	*	4	,t,,	J<JJ	0	*	*	1	,	J	1	a	J
-Chromosome7	345545452	C	0	*	*	4	t,,,	JJFJ	0	*	*	1	a	J	1	t	J
-Chromosome7	345545462	C	0	*	*	4	t,,,	FJJA	0	*	*	1	,	J	1	t	J
-Chromosome7	345619376	T	1	C	A	0	*	*	0	*	*	1	.	J	2	.c	JJ
-Chromosome7	345619377	A	1	T	A	0	*	*	0	*	*	1	.	7	2	.t	FJ
-Chromosome7	345765612	G	0	*	*	0	*	*	1	.	A	1	.-1A	J	1	.-1A	J
-Chromosome7	345809363	C	8	.,,,t,,,	oAJJJFJ7	3	,,,	JJJ	8	,,t,,,t,	FFJJJJFJ	1	t	J	5	.t,,,	`7JJJ
-Chromosome7	345817628	C	3	.-1T,-1t,	JFA	1	,-1t	7	0	*	*	0	*	*	1	,	J
-Chromosome7	345817633	A	3	Gg,	JAF	1	g	A	0	*	*	0	*	*	1	,	F
-Chromosome7	345817645	A	3	Gg,	JF7	1	g	F	0	*	*	0	*	*	1	,	J
-Chromosome7	345817648	G	3	Aa,	JA<	1	a	A	0	*	*	0	*	*	1	,	J
-Chromosome7	345817673	T	3	Cc,	sJF	1	c	J	0	*	*	0	*	*	1	,	J
-Chromosome7	345817685	A	2	.g	sF	1	g	A	0	*	*	0	*	*	1	,	J
-Chromosome7	345817688	T	3	Cc,	sFJ	1	c	<	0	*	*	0	*	*	1	,	J
-Chromosome7	345817693	A	3	Gg,	sJJ	1	g	J	0	*	*	0	*	*	1	,	J
-Chromosome7	345817697	T	3	.c,	s<J	1	c	7	0	*	*	0	*	*	1	,	J
-Chromosome7	345817699	G	3	.a,	sAJ	1	a	7	0	*	*	0	*	*	1	,	F
-Chromosome7	345817736	C	3	t,a	FJJ	1	t	<	0	*	*	0	*	*	1	,	J
-Chromosome7	345817754	C	3	t,t	JJJ	1	t	F	0	*	*	0	*	*	1	,	J
-Chromosome7	345889121	A	1	G	J	2	.G	JJ	2	..	JJ	0	*	*	0	*	*
-Chromosome7	345889252	C	1	g	J	2	,,	JJ	2	t,	JF	0	*	*	0	*	*
-Chromosome7	345889318	C	1	,	J	2	t,	JJ	2	t,	JJ	0	*	*	0	*	*
-Chromosome7	345889337	T	1	,	J	2	,g	JJ	2	g,	JJ	0	*	*	0	*	*
-Chromosome7	346081063	T	0	*	*	1	c	F	2	,a	JJ	0	*	*	2	,,	JJ
-Chromosome7	346224276	C	0	*	*	3	ttt	JJJ	2	t,	AF	3	,,,	JJF	3	t,t	JJF
-Chromosome7	346290049	G	1	.	J	0	*	*	0	*	*	1	.-2AT	J	2	.-2AT.	JJ
-Chromosome7	346290217	A	1	,	J	0	*	*	0	*	*	1	t	J	2	t,	FJ
-Chromosome7	346378750	A	1	.	J	0	*	*	1	C	J	0	*	*	3	.C.	<JJ
-Chromosome7	346452740	T	2	.C	js	8	.CCCCC..	oasssjs\	10	......CC.C	s`Mae`jjss	1	C	j	6	..CCC,	s`MasF
-Chromosome7	346486385	A	0	*	*	2	.C	JF	3	CC.	JJJ	0	*	*	1	C	J
-Chromosome7	346542183	C	1	t	J	0	*	*	2	,t	JJ	0	*	*	1	,	J
-Chromosome7	346582280	G	1	c	7	0	*	*	0	*	*	1	.	s	2	,c	JJ
-Chromosome7	346719385	G	1	.	J	2	A.	JJ	0	*	*	0	*	*	1	A	J
-Chromosome7	346719394	C	1	.	J	2	T.	`J	0	*	*	0	*	*	1	T	s
-Chromosome7	346719496	A	1	.	s	2	gc	7J	0	*	*	1	C	s	1	g	J
-Chromosome7	346903956	G	1	,-1a	J	1	.-1A	J	0	*	*	2	,,-1a	J?	0	*	*
-Chromosome7	346915465	T	1	.	J	0	*	*	1	,-3ccc	F	2	,,-3ccc	JA	0	*	*
-Chromosome7	346915547	A	1	.-3GCT	F	0	*	*	1	,-3gct	F	1	,-3gct	=	0	*	*
-Chromosome7	347001624	C	0	*	*	2	.+1T.+1T	JJ	1	.+1T	J	0	*	*	3	..+1T.+1T	>AH
-Chromosome7	347064241	G	1	T	J	2	A.	FJ	1	.	J	0	*	*	0	*	*
-Chromosome7	347064348	T	1	C	J	2	.A	JJ	1	.	7	0	*	*	0	*	*
-Chromosome7	347064375	C	1	T	F	2	.T	JJ	1	.	J	0	*	*	0	*	*
-Chromosome7	347064465	T	1	,	J	1	c	;	2	C,	dJ	0	*	*	0	*	*
-Chromosome7	347064540	C	1	t	F	2	t,	A<	2	.,	oJ	0	*	*	0	*	*
-Chromosome7	347403328	A	1	.	J	0	*	*	0	*	*	1	C	s	2	C.	J7
-Chromosome7	347403340	C	1	.	J	0	*	*	0	*	*	1	T	X	2	T.	FF
-Chromosome7	347403685	C	1	,	J	0	*	*	0	*	*	1	t	J	2	,t	AJ
-Chromosome7	347421656	T	0	*	*	1	G	s	1	,	A	2	G^].	oA	0	*	*
-Chromosome7	347421693	A	0	*	*	1	T	s	1	,	J	2	T.	sf	0	*	*
-Chromosome7	347421717	G	0	*	*	1	A	s	1	,	J	2	A.	sa	0	*	*
-Chromosome7	347421737	G	0	*	*	1	a	J	1	,	J	2	a.	Js	0	*	*
-Chromosome7	347508967	A	0	*	*	0	*	*	2	g,	JJ	1	,	J	2	,g	<F
-Chromosome7	347513392	G	1	C	J	0	*	*	2	.C	JJ	1	.	A	0	*	*
-Chromosome7	347513737	A	1	g	A	0	*	*	2	,g	JJ	1	,	J	0	*	*
-Chromosome7	347591738	C	0	*	*	0	*	*	2	T.	J<	1	T	s	1	.	J
-Chromosome7	347934824	G	1	.-1T	F	0	*	*	1	.	J	0	*	*	1	A	J
-Chromosome7	348044297	G	0	*	*	1	a	J	3	a,,	JJJ	3	a,,	J<J	2	ta	J7
-Chromosome7	348044326	G	0	*	*	1	,-12atgagaataata	5	3	,-12atgagaataatat,	5JJ	3	,-12atgagaataata,,	57J	2	,,	JJ
-Chromosome7	348044405	G	0	*	*	0	*	*	1	a	J	2	,,	AJ	2	,a	JI
-Chromosome7	348268378	C	1	.-1T	J	0	*	*	0	*	*	1	.	J	1	.-1T	F
-Chromosome7	348329224	A	1	,	7	0	*	*	1	.-5TACTG	M	0	*	*	1	.-5TACTG	M
-Chromosome7	348347877	G	0	*	*	2	.^;.	JA	2	AA	JJ	0	*	*	3	AA.	JJJ
-Chromosome7	348425046	T	0	*	*	3	..C	<JJ	0	*	*	1	.	J	1	A	J
-Chromosome7	348425047	G	0	*	*	3	..T	JJJ	0	*	*	1	T	F	1	.	J
-Chromosome7	348668557	C	0	*	*	2	a,	JJ	1	t	J	0	*	*	2	,,	JJ
-Chromosome7	348682648	T	1	c	J	2	c,	JF	7	ccc,cc,	JJJJJFJ	3	cc,	JJJ	7	c,c,c,,	FJJJJFJ
-Chromosome7	348904278	T	0	*	*	0	*	*	1	.	J	1	.-3AAG	J	1	.-3AAG	J
-Chromosome7	348916686	C	2	T.	ss	1	.	s	0	*	*	0	*	*	2	A.	ss
-Chromosome7	348946421	T	0	*	*	4	.,,a	sJJJ	1	,	J	0	*	*	1	a	s
-Chromosome7	349093658	A	1	,	J	0	*	*	1	g	J	2	.g	sJ	2	g,	JF
-Chromosome7	349188696	A	1	t	J	2	t,	JJ	0	*	*	0	*	*	1	,	<
-Chromosome7	349208585	C	2	..-1T	JJ	2	.-1T.	JF	1	.-1T	J	1	.-1T	J	1	.	J
-Chromosome7	349332788	G	2	,a	JJ	1	A	P	0	*	*	0	*	*	1	,	J
-Chromosome7	349392171	C	1	T	F	0	*	*	0	*	*	1	.	F	2	T.	AF
-Chromosome7	349392173	G	1	.	J	0	*	*	0	*	*	1	A	J	2	.A	AJ
-Chromosome7	349392194	C	1	T	J	0	*	*	0	*	*	1	.	J	2	T.	Js
-Chromosome7	349392203	A	1	G	J	0	*	*	0	*	*	1	.	`	2	G.	Fs
-Chromosome7	349392206	C	1	G	J	0	*	*	0	*	*	1	.	o	2	G.	Fj
-Chromosome7	349392274	G	1	A	J	0	*	*	0	*	*	1	.	s	2	A.	As
-Chromosome7	349392276	A	1	G	J	0	*	*	0	*	*	1	.	o	2	G.	<s
-Chromosome7	349419983	A	1	,-1t	G	1	,-1t	G	0	*	*	0	*	*	3	,,,	J<J
-Chromosome7	349420012	C	1	,-2at	J	1	,-2at	J	0	*	*	0	*	*	4	,,-2at,-2at,-2at	JJJJ
-Chromosome7	349423859	C	7	a,,,,,,	AJJJJJJ	6	,,,ta,	JAJJJJ	7	a,,,,,,	AJJJJJJ	1	,	F	6	,t,,,,	AJJFAJ
-Chromosome7	349492251	G	1	t	<	2	,t	JJ	1	,	J	0	*	*	0	*	*
-Chromosome7	349499134	C	2	t.	FJ	0	*	*	1	t	J	2	t.	JF	0	*	*
-Chromosome7	350048436	G	0	*	*	1	a	<	1	,	J	0	*	*	2	a,	JJ
-Chromosome7	350058226	G	0	*	*	1	.	o	1	t	J	2	t.	Fo	0	*	*
-Chromosome7	350058231	G	0	*	*	1	.	s	1	a	J	2	a.	Jo	0	*	*
-Chromosome7	350151680	G	3	..A	JJJ	0	*	*	1	.	J	1	T	J	0	*	*
-Chromosome7	350151687	A	3	..C	JJJ	0	*	*	1	.	J	1	C	J	0	*	*
-Chromosome7	350219405	A	0	*	*	2	..	AA	2	G.	kF	2	G.	JF	0	*	*
-Chromosome7	350219430	C	0	*	*	2	..	JJ	2	T.	oJ	2	T.	J<	0	*	*
-Chromosome7	350219498	A	0	*	*	3	..T	JJs	1	.	J	2	T.	sF	0	*	*
-Chromosome7	350219501	G	0	*	*	3	..A	JJs	1	.	J	2	A.	sF	0	*	*
-Chromosome7	350219508	G	0	*	*	3	..A	JJs	1	.	J	2	A.	oJ	0	*	*
-Chromosome7	350219514	A	0	*	*	3	CC.	JJs	1	C	J	2	..	s<	0	*	*
-Chromosome7	350219521	G	0	*	*	3	..A	JJs	1	.	J	2	.a	JJ	0	*	*
-Chromosome7	350219522	A	0	*	*	3	..C	FJs	1	.	J	2	.t	<J	0	*	*
-Chromosome7	350219525	A	0	*	*	3	..G	FJs	1	.	J	2	.g	JJ	0	*	*
-Chromosome7	350219531	A	0	*	*	3	..G	FJs	1	.	J	2	.g	FJ	0	*	*
-Chromosome7	350219559	G	1	.	J	2	T.	sJ	0	*	*	1	a	J	0	*	*
-Chromosome7	350219587	T	1	.	J	2	A.	sJ	0	*	*	1	a	J	0	*	*
-Chromosome7	350219591	A	1	.	J	2	G.	sJ	0	*	*	1	g	J	0	*	*
-Chromosome7	350219597	T	1	.	J	2	C.	sJ	0	*	*	1	c	J	0	*	*
-Chromosome7	350219907	G	1	c	A	3	,c,	JAF	0	*	*	1	.	s	0	*	*
-Chromosome7	350219912	T	1	c	J	3	,c,	JJA	0	*	*	1	.	s	0	*	*
-Chromosome7	350219924	A	1	g	F	3	,g,	JJF	0	*	*	1	.	s	0	*	*
-Chromosome7	350219954	C	1	,	F	3	t,,	JFJ	0	*	*	1	T	s	0	*	*
-Chromosome7	350219974	C	1	t	J	3	,t,	JJA	0	*	*	1	,	J	0	*	*
-Chromosome7	350226368	A	0	*	*	0	*	*	2	G.	VW	2	..	as	2	G.	ko
-Chromosome7	350282003	A	1	.	A	0	*	*	1	.-1G	J	2	.-1G*	sE	0	*	*
-Chromosome7	350285776	G	0	*	*	1	A	A	3	.AA	FJJ	0	*	*	2	..	JF
-Chromosome7	350285809	A	0	*	*	1	G	<	3	.GG	JJJ	0	*	*	2	..	AA
-Chromosome7	350285817	G	0	*	*	1	A	:	3	.AA	<55	0	*	*	2	..	JJ
-Chromosome7	350285819	G	0	*	*	1	.-7TTATCTA	:	3	..-7TTATCTA.-7TTATCTA	J55	0	*	*	2	..	JJ
-Chromosome7	350285974	A	0	*	*	1	g	F	3	,gg	JJJ	0	*	*	2	,,	FA
-Chromosome7	350286004	G	0	*	*	1	a	J	3	,aa	JJJ	0	*	*	2	,,	JJ
-Chromosome7	350286039	C	0	*	*	1	t	J	3	,tt	7JJ	0	*	*	2	,,	JJ
-Chromosome7	350286046	G	0	*	*	1	a	A	3	,aa	JJJ	0	*	*	1	,	7
-Chromosome7	350286053	A	0	*	*	1	g	J	3	,gg	FJJ	0	*	*	2	,,	A<
-Chromosome7	350388772	C	3	.+1T.+1T.	JFJ	2	.+2TT.	FJ	2	.+1T.+2TT	JJ	2	..+10TTTTTTTTTG	JJ	6	.+3TTT...+1T.+4TTTT.	JJJFJF
-Chromosome7	350389024	G	2	,-1t,-1t	JF	0	*	*	4	,-1t,-1t,-1t,	JJJJ	1	,-1t	J	4	,-1t,-1t,,+6tttttt	JJJ<
-Chromosome7	350533390	C	1	,-3taa	F	0	*	*	1	,	J	0	*	*	1	,-3taa	J
-Chromosome7	350585795	C	0	*	*	1	.	s	3	TT.	sss	2	,T	Jo	0	*	*
-Chromosome7	350585804	T	0	*	*	1	.	s	3	GG.	ose	2	,G	Ff	0	*	*
-Chromosome7	350585829	C	0	*	*	1	,	J	3	tt,	77J	1	t	7	0	*	*
-Chromosome7	350591161	G	0	*	*	2	,a	JJ	2	aa	JJ	0	*	*	2	,,	JJ
-Chromosome7	350602243	G	0	*	*	2	a,	JJ	2	a,	FJ	2	,,	J<	2	aa	JJ
-Chromosome7	350664691	A	2	.G	JJ	2	g.	sJ	2	.G	sJ	2	.G	JJ	4	..G.	JFJJ
-Chromosome7	350668206	A	3	...	AAF	0	*	*	2	.G	F=	5	G.GG.	=F==<	5	G.GG.	=F==F
-Chromosome7	350678527	T	0	*	*	1	.-1C	E	1	.-1C	G	0	*	*	2	.-1C.-1C	GG
-Chromosome7	350719706	A	1	.-7GCTGCTT	s	1	,	J	1	,-7gctgctt	J	0	*	*	0	*	*
-Chromosome7	350823984	G	0	*	*	4	..A.	AJJA	1	A	J	0	*	*	1	.	A
-Chromosome7	350824430	G	0	*	*	3	,,a	JJF	1	a	J	0	*	*	2	,,	J7
-Chromosome7	350930703	G	2	C.	JJ	1	C	J	4	..C.	JAJF	0	*	*	1	.	J
-Chromosome7	350930838	G	2	cc	JJ	2	c.	Jo	4	aaac	JJJJ	0	*	*	1	,	A
-Chromosome7	351136799	T	0	*	*	1	,	J	0	*	*	1	,-2ac	J	1	a	J
-Chromosome7	351142034	A	0	*	*	2	GC	JJ	1	C	J	0	*	*	1	G	J
-Chromosome7	351142093	A	0	*	*	2	.G	JJ	1	G	J	0	*	*	1	.	s
-Chromosome7	351142142	G	0	*	*	2	.T	oo	1	T	J	0	*	*	1	.	s
-Chromosome7	351142165	A	0	*	*	2	G,	sJ	1	g	J	0	*	*	1	,	J
-Chromosome7	351142201	A	0	*	*	2	,,-1t	JA	1	,-1t	J	0	*	*	1	,	J
-Chromosome7	351145304	C	2	..	FJ	0	*	*	2	,T	JJ	0	*	*	1	T	J
-Chromosome7	351145343	C	2	T.	FJ	0	*	*	1	.	J	0	*	*	1	T	J
-Chromosome7	351174502	C	0	*	*	1	.	J	2	.T	FF	1	T	J	0	*	*
-Chromosome7	351174710	T	0	*	*	2	,,	JJ	2	c,	JF	1	c	J	0	*	*
-Chromosome7	351296085	G	2	,A	J7	1	.	A	0	*	*	1	A	7	5	.A.A.	F7F7F
-Chromosome7	351296476	T	0	*	*	1	,	F	0	*	*	1	c	J	4	,c,,	AJAJ
-Chromosome7	351449275	T	0	*	*	0	*	*	1	.	J	1	A	7	4	.AA.	JJAJ
-Chromosome7	351546205	C	1	.-1A	F	0	*	*	1	.	J	2	.-1A.-1A	ss	0	*	*
-Chromosome7	351550142	A	1	,	J	1	.-5TTGGT	f	0	*	*	1	.-5TTGGT	s	0	*	*
-Chromosome7	351650596	C	2	,t	JJ	0	*	*	1	,	J	0	*	*	1	t	J
-Chromosome7	351650608	A	2	,$c	>J	0	*	*	1	,$	>	0	*	*	1	c	A
-Chromosome7	351688256	T	0	*	*	1	.-1C	J	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome7	351688474	T	0	*	*	1	,-1a	J	1	,-1a	J	0	*	*	1	,-1a	J
-Chromosome7	351818880	A	0	*	*	0	*	*	3	..G	FAJ	1	G	s	1	.	J
-Chromosome7	351819021	T	0	*	*	1	C	s	2	,c	FJ	0	*	*	1	,	J
-Chromosome7	351819049	T	0	*	*	1	c	J	3	c,c	FJJ	0	*	*	1	,	J
-Chromosome7	351819087	A	0	*	*	1	g	J	2	,g	FJ	0	*	*	1	,	J
-Chromosome7	351824713	A	2	G.	JJ	0	*	*	1	.	J	0	*	*	1	G	J
-Chromosome7	351824739	T	2	C.	JJ	0	*	*	1	.	J	0	*	*	1	C	J
-Chromosome7	351824742	C	2	T.	JF	0	*	*	1	.	J	0	*	*	1	T	A
-Chromosome7	351824758	C	2	T.	FJ	0	*	*	1	.	`	0	*	*	1	T	J
-Chromosome7	351824762	G	2	A.	JJ	0	*	*	1	.	e	0	*	*	1	A	J
-Chromosome7	351824785	C	2	T.	JF	0	*	*	1	.	e	0	*	*	1	T	B
-Chromosome7	351979512	G	1	.-1C	J	1	.-1C	J	0	*	*	1	,-1c	J	0	*	*
-Chromosome7	352083091	C	1	.-1A	J	0	*	*	2	..	JJ	1	.-1A	J	1	.-1A	J
-Chromosome7	352241086	A	1	.	J	0	*	*	1	C	J	2	C.	JJ	0	*	*
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-Chromosome7	352257936	A	0	*	*	3	,..	JJJ	1	,-1t	F	0	*	*	1	,-1t	F
-Chromosome7	352258895	A	1	.-1T	s	1	.-1T	o	1	.-1T	s	0	*	*	0	*	*
-Chromosome7	352465184	T	1	,	J	0	*	*	1	c	J	2	c,	JJ	0	*	*
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-Chromosome7	352653926	C	2	.-4GCAG.-4GCAG	==	0	*	*	0	*	*	1	.-4GCAG	=	1	.-4GCAG	=
-Chromosome7	352658920	A	2	g,	JA	0	*	*	0	*	*	3	.g,	sJ<	1	,	J
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-Chromosome7	352658974	A	2	gg	J7	0	*	*	0	*	*	3	g,,	JFJ	1	,	J
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-Chromosome7	352690801	A	1	,-3tgt	J	0	*	*	1	,-3tgt	J	1	.	s	0	*	*
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-Chromosome7	352837149	T	2	G.	FJ	0	*	*	2	G.	JJ	0	*	*	1	.	J
-Chromosome7	352837195	T	2	G.	JJ	0	*	*	1	G	J	0	*	*	1	.	F
-Chromosome7	352905954	C	0	*	*	2	.-2AG.-2AG	7J	1	.-2AG	J	0	*	*	3	.-2AG.-2AG.-2AG	AJJ
-Chromosome7	353282895	A	0	*	*	1	G	:	2	.G	F:	0	*	*	1	.	F
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-Chromosome7	353289911	C	0	*	*	0	*	*	2	t,	JJ	1	,	J	3	tt,	JJJ
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-Chromosome7	353340123	T	1	,	A	1	c	J	0	*	*	2	,c	AJ	0	*	*
-Chromosome7	353481215	A	7	ggg,,g,	JJJJJJJ	3	g,g	JJJ	3	g,,	<JJ	5	,g,,,	JJJFJ	3	g,g	JJJ
-Chromosome7	353481230	T	7	,aa,,,,	JJJJJFJ	3	,a,	JJF	4	,,a,	JAJJ	5	,,,,,	JJJJJ	3	a,c	JAF
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-Chromosome7	353582958	C	0	*	*	0	*	*	2	A.	sJ	4	....	AJkJ	2	.T	JJ
-Chromosome7	353588525	C	8	.A......	JJJJJJJJ	9	...A.....	JJJFJJAJJ	4	.A..	JJJJ	7	..G.A..	<JJAJ<J	10	A.AA......	FJJFJ7JJJJ
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-Chromosome7	353831174	C	0	*	*	0	*	*	1	.-2TG	J	1	,	J	1	.-2TG	J
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-Chromosome7	354098796	A	2	G.	JJ	0	*	*	1	G	J	0	*	*	1	.	F
-Chromosome7	354099105	C	1	,-1t	J	0	*	*	0	*	*	1	.-1T	s	1	,-1t	J
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-Chromosome7	354439216	C	1	.-1G	J	2	.-1G.-1G	JJ	0	*	*	1	.-1G	J	2	.-1G.-1G	JJ
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-Chromosome7	354779141	A	0	*	*	0	*	*	2	.+1C.+1C	JJ	1	.	s	1	.-1C	J
-Chromosome7	354812917	T	0	*	*	1	.-7AGCAGAC	s	2	.-7AGCAGAC.-7AGCAGAC	JJ	1	.-7AGCAGAC	J	0	*	*
-Chromosome7	354885848	G	0	*	*	1	.	J	4	T...	FJJA	2	T.	AJ	2	.a	JJ
-Chromosome7	354886754	T	10	...G......	<JJJAJJJJJ	5	..G.G	JJAJJ	7	....GG.	FJJJJJJ	1	.	J	3	.G.	JJJ
-Chromosome7	354886826	A	10	.......GGG	JJJFAJFJJJ	5	.....	JFFJJ	10	.......G.^I.	JFFJJJJJA<	1	G	J	3	.G.	JJJ
-Chromosome7	354886859	C	10	..T..T..T.	FJsJFJJJFJ	5	...T.	JF7AA	10	.........T	AJJJJJJsJJ	2	T^=.	JA	3	...	JAJ
-Chromosome7	354886976	T	9	,,,,,,,,,	JJJJFJAFJ	5	c,,,,	JFJJJ	10	,,,,,,,,,c	JJJJJJJJJF	2	C,	sJ	3	c,,	FJJ
-Chromosome7	354887372	T	0	*	*	2	C.	JJ	2	C.	JJ	1	C	J	0	*	*
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-Chromosome7	355682493	C	0	*	*	1	.-1A	F	1	.	J	0	*	*	1	.-13ATTGTAGTTGCAA	;
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-contig_22396_1	2651	C	219	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJAJJJJJJJ<FFJJJFJJAJFJJJJJAJJJJJJJJJJJJJJJAJ7JJJJAJFJJJJJJFJJJJJJJJJJJFJJJJJJAJJJJAJ7JJJJJ7JJJJJJJAFJJJJJJJJJJJJJAJJJJJJJJJJJJFJJFJJJJJAJFJAJJJJJJJAJF<JJJJJJJJJJJJFJAJJ	159	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	FAJ<JJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJAJ<JJJJJAJJJJ<JJAJJJJJFFJJFJJJJFJJJJJJJJJFJFJJJJ<JJJFJJJJJJJJJJJJJJJJJJJJFAJJJJJJJJAFJJAJJJJJJJJJJJJJJJJJJJJJ<	258	,$,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,	AFJJJJJJJJJFJ<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJ<JJJJJJJJ7JJJJJJJ7AJJFJJJJJJJJJJJJJFFJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJJJFJ<AJJJJJJJJFJJJJJJJJJJJJJJAJJJJJJJFJJJJJJJJJJJJJAJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJ<JAJJJFJJJJJJJJJFJAJJJJJJJJJJJJJJJJFJ	175	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,	JJFFJJJJJJJFJJFJJJJJJJJJJ7JJJJJJJJJJJJJJAJJJJJJFJJJJAJJJJJJJJJ<JJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJAJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFFFJJJ	296	t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	<FJJJJJJJJFJJJJJJJJJJJJJJJFJJJFJJJJJJJFJJJJJJJJJJJJAFJJJFJJJJJJJJJJJJJJJJJJJJFAJJJJFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFJJJJJAJJAAJFJJJJJJJFJJFJJJJFJJJJJJJJJJJJJJAJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJFAJAJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJJJJJJJJJJJJFFJJJJJJJ
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-contig_22396_1	4913	C	2	.+2AA.+1A	FF	0	*	*	1	.	J	5	.+1A..,.+2AA	JJJ<J	0	*	*
-contig_22396_1	6914	C	0	*	*	3	..T	fks	8	......T.	ssCosssR	6	..TT..	ssssso	6	,...T.	ssssss
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-contig_22396_1	23890	A	3	g,g	JJJ	1	,	J	0	*	*	0	*	*	1	g	J
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-contig_31718_1	15303	G	100	...,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	RsoJ<7FJJAJ7FFJFFFF7JJFFJA<JJJJJFJFAAJF<<JJJJJAJJ7FJJFJFJAJJFJJAFJJJJJFJFJJJJJF<AFJAFJJ7JFFJF7JAJAAJ	87	..............,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	VffsoososofjssJ<JJJFJJFFJJFJJAJJ<JJJJAJJFJJFJFJJFJJ7FFJFJF7JAJJJFFJ<AJFFJJJJJFFJJJFFJJA	119	............,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,	RoosssoooassJAFJJFJJ<7FFFJJFJJAAJFFF7<JJFJA<JJFJJJAAFJFJFFFFFFJFJJFJJJFJFJJJFFJFFJFJJJJJAFJJ<FAJJJJJFJJJAFJJAFFFJFFAJJ<	92	.............,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	fosesssosoosoJ<JJJFFFJ<JFJJ7JA<7JAJAJJJFJJ<FJFAFJJJJAFJFJJJJFFJJJJJAJJFJJJJ<F7JJJJJJFJJJJJJJ	146	.....,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	sasok7<FJFJJJJ<FJJJFJJFJJ7JJFJFJFJAJ<JFJJAFJJJFJFFJJFFJAJJFJJJJJJJJFJJFAJF7JJJ<JFJFJJ<FJ7FF<F7JJFJJJJJJAJAJ777JFJJJFJJFFJJ7JJAJJJFJ<FJJJFFFJ7JJJJJ
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diff --git a/src/rust/tests/test.sync b/src/rust/tests/test.sync
deleted file mode 100644
index 03e7ce5..0000000
--- a/src/rust/tests/test.sync
+++ /dev/null
@@ -1,6675 +0,0 @@
-#chr	pos	ref	UG-pool1.bam	UG-pool2.bam	UG-pool3.bam	UG-pool4.bam	UG-pool5.bam
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-Chromosome1	1041321	T	0:20:0:1:0:0	0:12:0:0:0:0	0:15:0:1:0:0	0:22:0:1:0:0	0:26:0:1:0:0
-Chromosome1	1131021	C	0:1:1:0:0:0	0:1:1:0:0:0	0:0:1:0:0:0	0:1:5:0:0:0	0:1:0:0:0:0
-Chromosome1	1133215	C	0:0:5:0:0:0	1:0:2:0:0:0	0:0:12:0:0:0	0:0:8:0:0:0	0:0:13:0:0:0
-Chromosome1	1133226	T	0:5:0:0:0:0	0:3:0:0:0:0	0:14:0:0:0:0	1:9:0:0:0:0	0:12:0:0:0:0
-Chromosome1	1133227	G	0:0:0:4:1:0	0:0:0:1:2:0	0:0:0:10:4:0	0:0:0:3:7:0	0:0:0:8:5:0
-Chromosome1	1133415	C	1:0:4:0:0:0	0:0:3:0:0:0	3:0:11:0:0:0	2:0:8:0:0:0	4:0:10:0:0:0
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-Chromosome1	1134063	G	0:0:1:14:0:0	0:0:0:9:0:0	0:1:0:10:0:0	0:0:1:1:0:0	0:0:2:10:0:0
-Chromosome1	3356561	C	0:1:4:0:0:0	0:1:4:0:0:0	0:0:3:0:0:0	0:1:3:0:0:0	0:2:2:0:0:0
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-Chromosome1	3425579	A	0:0:0:1:0:0	2:0:0:0:0:0	1:0:0:1:0:0	3:0:0:1:0:0	1:0:0:1:0:0
-Chromosome1	4167318	C	0:0:11:0:0:0	0:0:10:0:0:0	0:1:15:0:0:0	0:0:13:0:0:0	0:0:19:0:0:0
-Chromosome1	4167526	T	0:8:0:3:0:0	0:9:0:1:0:0	0:16:0:1:0:0	0:13:0:0:0:0	0:18:0:1:0:0
-Chromosome1	4169383	C	0:0:2:1:0:0	0:0:1:3:0:0	0:0:2:3:0:0	0:0:0:1:0:0	0:0:4:3:0:0
-Chromosome1	4171944	C	0:7:31:0:0:0	0:2:19:0:0:0	0:5:28:0:0:0	0:9:25:0:0:0	0:6:35:0:0:0
-Chromosome1	4172193	G	1:0:0:38:0:0	0:1:0:15:0:0	1:0:0:30:0:0	0:0:0:36:0:0	1:0:0:42:0:0
-Chromosome1	4172212	T	0:33:6:0:0:0	0:14:2:0:0:0	0:26:5:0:0:0	0:26:9:0:0:0	0:37:5:0:0:0
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-Chromosome1	4172786	T	0:13:3:0:0:0	0:5:1:0:0:0	0:10:1:0:0:0	0:5:0:0:0:0	0:22:2:0:0:0
-Chromosome1	4172842	C	0:0:25:0:0:0	0:0:14:0:0:0	2:0:37:0:0:0	0:0:18:0:0:0	0:0:35:0:0:0
-Chromosome1	4172854	A	21:0:0:1:0:0	9:0:0:0:0:0	35:0:0:1:0:0	15:0:0:1:0:0	26:0:0:3:0:0
-Chromosome1	4172860	T	1:22:0:0:0:0	0:10:0:0:0:0	1:33:0:0:0:0	1:17:0:0:0:0	2:28:0:0:0:0
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-Chromosome1	4174038	A	1:0:0:7:0:0	6:0:0:6:0:0	4:0:0:3:0:0	4:0:0:5:0:0	2:0:0:12:0:0
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-Chromosome1	4205632	T	0:1:0:0:0:0	0:0:0:1:0:0	0:4:0:1:0:0	0:4:0:1:0:0	0:2:0:3:0:0
-Chromosome1	6302801	G	0:0:0:27:0:0	3:0:0:22:0:0	0:1:0:28:0:0	0:0:1:21:0:0	1:0:0:37:0:0
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-Chromosome1	6453592	T	0:3:1:0:0:0	0:5:1:0:0:0	0:3:1:0:0:0	0:1:0:0:0:0	0:5:1:0:0:0
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-contig_8289_1	17736	C	0:2:3:0:0:0	0:2:4:0:0:0	0:1:4:0:0:0	0:1:3:0:0:0	0:1:5:0:0:0
-contig_8289_1	21348	T	3:1:0:0:0:0	0:1:0:0:0:0	2:0:0:0:0:0	2:1:0:0:0:0	1:2:0:0:0:0
-contig_8289_1	21488	A	5:1:0:0:0:0	6:0:0:0:0:0	10:0:0:0:0:0	15:0:0:0:0:0	6:0:0:0:0:0
-contig_8289_1	21760	G	0:0:2:10:0:0	0:0:8:20:0:0	0:0:16:50:0:0	0:0:9:45:0:0	0:0:12:58:0:0
-contig_8289_1	21781	A	11:0:0:1:0:0	26:0:0:1:0:0	65:0:0:1:0:0	50:0:0:4:0:0	64:0:0:6:0:0
-contig_8289_1	25813	G	1:0:0:31:0:0	1:0:0:23:0:0	2:0:0:32:0:0	1:0:0:37:0:0	0:0:0:43:0:0
-contig_8289_1	25895	G	0:2:0:32:0:0	0:0:0:33:0:0	0:1:0:39:0:0	0:1:0:41:0:0	0:1:0:44:0:0
-contig_8289_1	25926	C	0:3:32:0:0:0	0:0:34:0:0:0	0:4:35:0:0:0	0:4:38:0:0:0	0:3:41:0:0:0
-contig_8289_1	26038	C	2:0:30:1:0:0	0:0:26:0:0:0	1:0:34:0:0:0	1:0:37:0:0:0	1:0:43:0:0:0
-contig_8289_1	26039	T	0:26:0:7:0:0	0:26:0:0:0:0	1:23:0:11:0:0	0:29:0:8:0:0	0:35:0:8:0:0
-contig_8289_1	28505	T	0:18:0:0:0:0	0:35:0:2:0:0	0:79:0:2:0:0	0:72:0:2:0:0	1:80:0:2:0:0
-contig_8289_1	28513	C	0:0:18:0:0:0	0:0:35:2:0:0	0:0:82:1:0:0	0:0:72:2:0:0	0:1:79:3:0:0
-contig_8289_1	29722	C	0:0:19:0:0:0	0:0:13:0:0:0	0:0:22:0:0:0	0:0:16:0:0:0	0:0:8:0:1:0
-contig_8289_1	29761	A	17:0:0:0:0:0	17:0:0:0:0:0	21:0:0:0:1:0	19:0:0:0:0:0	9:0:0:0:1:0
-contig_9424_1	297944	T	0:5:1:0:0:0	0:0:1:0:0:0	0:3:2:0:0:0	0:1:4:0:0:0	0:0:0:1:0:0
-contig_9730_1	327	C	0:0:4:1:0:0	0:0:4:0:0:0	0:0:10:0:0:0	0:0:3:1:0:0	0:0:7:0:0:0
-contig_9730_1	337	A	4:0:0:0:0:0	4:0:0:0:0:0	6:2:0:0:0:0	4:0:0:0:0:0	6:0:0:0:0:0
-contig_9730_1	905	G	0:8:0:4:0:0	0:4:0:5:0:0	0:10:0:5:0:0	0:4:0:8:0:0	0:11:0:8:0:0
-contig_9730_1	990	T	6:4:0:0:0:0	4:5:0:0:0:0	9:6:0:0:0:0	4:7:0:0:0:0	10:9:0:0:0:0
-contig_9730_1	1370	G	9:1:0:12:0:0	6:0:0:8:0:0	17:1:0:19:0:0	15:1:0:14:0:0	14:0:1:27:0:0
-contig_9998_1	49671	A	14:0:0:6:0:0	5:0:0:2:0:0	13:0:0:6:0:0	11:0:0:5:0:0	19:0:0:8:0:0
-contig_9998_1	63632	T	0:14:0:1:0:0	0:6:0:1:0:0	0:16:0:0:0:0	0:12:0:1:0:0	0:11:0:3:0:0
-contig_9998_1	63741	G	0:1:0:15:0:0	0:1:0:6:0:0	0:2:0:14:0:0	0:1:0:12:0:0	0:0:1:16:0:0
-contig_9998_1	63884	A	13:0:3:0:0:0	4:0:1:0:0:0	11:0:4:0:0:0	9:0:3:0:0:0	14:0:1:0:0:0
diff --git a/src/rust/tests/test.txt b/src/rust/tests/test.txt
deleted file mode 100644
index 0e81562..0000000
--- a/src/rust/tests/test.txt
+++ /dev/null
@@ -1,6918 +0,0 @@
-#chr,pos,allele,G1,G2,G3,G5
-Chromosome1,456527,T,0.238095,0.238095,0.333333,0.142857
-Chromosome1,456527,C,0.761905,0.761905,0.666667,0.857143
-Chromosome1,1133215,A,0,0,0,0
-Chromosome1,1133215,C,1,1,1,1
-Chromosome1,1133226,A,0,0,0,0
-Chromosome1,1133226,T,1,1,1,1
-Chromosome1,1133415,A,0.2,0.2,0.2,0.2
-Chromosome1,1133415,C,0.8,0.8,0.8,0.8
-Chromosome1,1133880,A,0.683333,0.666667,0.683333,0.7
-Chromosome1,1133880,C,0.316667,0.333333,0.316667,0.3
-Chromosome1,1133952,T,1,1,1,1
-Chromosome1,1133952,C,0,0,0,0
-Chromosome1,1134063,T,0,0,0,0
-Chromosome1,1134063,C,0,0,0,0
-Chromosome1,1134063,G,1,1,1,1
-Chromosome1,3356561,T,0.2,0.2,0.2,0.2
-Chromosome1,3356561,C,0.8,0.8,0.8,0.8
-Chromosome1,4167318,T,0,0,0,0
-Chromosome1,4167318,C,1,1,1,1
-Chromosome1,4167526,T,0.9,0.9,0.9,0.9
-Chromosome1,4167526,G,0.1,0.1,0.1,0.1
-Chromosome1,4169383,C,0.485714,0.485714,0.4,0.571429
-Chromosome1,4169383,G,0.514286,0.514286,0.6,0.428571
-Chromosome1,4172348,A,0.6625,0.625,0.7,0.6625
-Chromosome1,4172348,C,0,0,0,0
-Chromosome1,4172348,G,0.3375,0.375,0.3,0.3375
-Chromosome1,4172786,T,0.833333,0.833333,0.833333,0.833333
-Chromosome1,4172786,C,0.166667,0.166667,0.166667,0.166667
-Chromosome1,4172854,A,1,1,1,1
-Chromosome1,4172854,G,0,0,0,0
-Chromosome1,4172860,A,0,0,0,0
-Chromosome1,4172860,T,1,1,1,1
-Chromosome1,4172861,A,0,0,0,0
-Chromosome1,4172861,C,1,1,1,1
-Chromosome1,4172861,G,0,0,0,0
-Chromosome1,4174038,A,0.125,0.348214,0.571429,0.348214
-Chromosome1,4174038,G,0.875,0.651786,0.428571,0.651786
-Chromosome1,4175749,A,0.5,0.5,0.5,0.5
-Chromosome1,4175749,T,0.5,0.5,0.5,0.5
-Chromosome1,4205632,T,0.6,0.6,0.8,0.4
-Chromosome1,4205632,G,0.4,0.4,0.2,0.6
-Chromosome1,6453570,C,0.464286,0.5,0.464286,0.428571
-Chromosome1,6453570,G,0.535714,0.5,0.535714,0.571429
-Chromosome1,6453592,T,0.833333,0.833333,0.833333,0.833333
-Chromosome1,6453592,C,0.166667,0.166667,0.166667,0.166667
-Chromosome1,6978572,T,0.888889,1,0.9,0.92963
-Chromosome1,6978572,G,0.111111,0,0.1,0.07037
-Chromosome1,11067706,A,0.111111,0.333333,0,0.148148
-Chromosome1,11067706,G,0.888889,0.666667,1,0.851852
-Chromosome1,11067708,A,0.3,0.2,0.25,0.25
-Chromosome1,11067708,G,0.7,0.8,0.75,0.75
-Chromosome1,11141985,A,0.285714,0.285714,0.285714,0.285714
-Chromosome1,11141985,G,0.714286,0.714286,0.714286,0.714286
-Chromosome1,11142379,A,0.744444,0.6,0.888889,0.744444
-Chromosome1,11142379,C,0.255556,0.4,0.111111,0.255556
-Chromosome1,11357948,A,0,0,0,0
-Chromosome1,11357948,C,1,1,1,1
-Chromosome1,11357948,G,0,0,0,0
-Chromosome1,15381503,T,0.271429,0.4,0.142857,0.271429
-Chromosome1,15381503,C,0.728571,0.6,0.857143,0.728571
-Chromosome1,15381549,T,0.52381,0.8,0.571429,0.2
-Chromosome1,15381549,C,0.47619,0.2,0.428571,0.8
-Chromosome1,16684432,T,0.434921,0.4,0.333333,0.571429
-Chromosome1,16684432,C,0.565079,0.6,0.666667,0.428571
-Chromosome1,16684434,A,0.565079,0.6,0.666667,0.428571
-Chromosome1,16684434,T,0.434921,0.4,0.333333,0.571429
-Chromosome1,17211508,C,0.333333,0.333333,0.333333,0.333333
-Chromosome1,17211508,G,0.666667,0.666667,0.666667,0.666667
-Chromosome1,17551183,A,0.6,0.6,0.6,0.6
-Chromosome1,17551183,C,0.4,0.4,0.4,0.4
-Chromosome1,18218772,A,0.75,0.75,0.75,0.75
-Chromosome1,18218772,G,0.25,0.25,0.25,0.25
-Chromosome1,20756741,T,0.4,0.4,0.4,0.4
-Chromosome1,20756741,G,0.6,0.6,0.6,0.6
-Chromosome1,21034565,T,0,0,0,0
-Chromosome1,21034565,C,0.833333,0.833333,0.833333,0.833333
-Chromosome1,21034565,G,0.166667,0.166667,0.166667,0.166667
-Chromosome1,21034774,A,0.4,0.3,0.3,0.2
-Chromosome1,21034774,G,0.6,0.7,0.7,0.8
-Chromosome1,25785190,A,0,0,0,0
-Chromosome1,25785190,T,0.194444,0.166667,0.222222,0.194444
-Chromosome1,25785190,C,0.805556,0.833333,0.777778,0.805556
-Chromosome1,25785192,T,0.375,0.4875,0.4875,0.6
-Chromosome1,25785192,C,0.625,0.5125,0.5125,0.4
-Chromosome1,25785301,T,0.055556,0,0.111111,0.055556
-Chromosome1,25785301,C,0.944444,1,0.888889,0.944444
-Chromosome1,25785325,T,0.198413,0.285714,0.111111,0.198413
-Chromosome1,25785325,C,0.801587,0.714286,0.888889,0.801587
-Chromosome1,25785358,A,0,0,0,0
-Chromosome1,25785358,T,0.111111,0,0.222222,0.111111
-Chromosome1,25785358,C,0.888889,1,0.777778,0.888889
-Chromosome1,25788060,T,0.111111,0,0.074074,0.111111
-Chromosome1,25788060,C,0.888889,1,0.925926,0.888889
-Chromosome1,25788094,T,0,0,0.037037,0.111111
-Chromosome1,25788094,C,1,1,0.962963,0.888889
-Chromosome1,28043452,T,0.433333,0.666667,0.433333,0.2
-Chromosome1,28043452,C,0.566667,0.333333,0.566667,0.8
-Chromosome1,30193860,A,0.4,0.4,0.4,0.4
-Chromosome1,30193860,G,0.6,0.6,0.6,0.6
-Chromosome1,30194694,A,0.142857,0.142857,0.142857,0.142857
-Chromosome1,30194694,G,0.857143,0.857143,0.857143,0.857143
-Chromosome1,30194992,A,0.166667,0.166667,0.166667,0.166667
-Chromosome1,30194992,T,0.5,0.5,0.5,0.5
-Chromosome1,30194992,G,0.333333,0.333333,0.333333,0.333333
-Chromosome1,33599203,C,0.125,0.125,0.125,0.125
-Chromosome1,33599203,G,0.875,0.875,0.875,0.875
-Chromosome1,33599248,C,0.875,0.875,0.875,0.875
-Chromosome1,33599248,G,0.125,0.125,0.125,0.125
-Chromosome1,36692845,A,0.183333,0.2,0.166667,0.183333
-Chromosome1,36692845,G,0.816667,0.8,0.833333,0.816667
-Chromosome1,36692983,A,0,0,0,0
-Chromosome1,36692983,T,0.1,0.2,0,0.1
-Chromosome1,36692983,C,0.9,0.8,1,0.9
-Chromosome1,44320314,A,0.666667,0.666667,0.666667,0.666667
-Chromosome1,44320314,C,0.333333,0.333333,0.333333,0.333333
-Chromosome1,44320408,A,0.333333,0.333333,0.333333,0.333333
-Chromosome1,44320408,C,0.666667,0.666667,0.666667,0.666667
-Chromosome1,44320416,T,0.666667,0.666667,0.666667,0.666667
-Chromosome1,44320416,C,0.333333,0.333333,0.333333,0.333333
-Chromosome1,45475947,A,0.142857,0.142857,0.142857,0.142857
-Chromosome1,45475947,C,0.142857,0.142857,0.142857,0.142857
-Chromosome1,45475947,G,0.714286,0.714286,0.714286,0.714286
-Chromosome1,45476031,A,0.857143,0.857143,0.857143,0.857143
-Chromosome1,45476031,G,0.142857,0.142857,0.142857,0.142857
-Chromosome1,46519012,A,0.4,0.428571,0.387302,0.333333
-Chromosome1,46519012,C,0.6,0.571429,0.612698,0.666667
-Chromosome1,46519012,G,0,0,0,0
-Chromosome1,48525060,A,0,0,0,0
-Chromosome1,48525060,C,1,1,1,1
-Chromosome1,48525065,A,0.1,0.335714,0.571429,0.335714
-Chromosome1,48525065,T,0,0.071429,0.142857,0.071429
-Chromosome1,48525065,G,0.9,0.592857,0.285714,0.592857
-Chromosome1,48525269,A,0,0,0,0
-Chromosome1,48525269,C,0.1,0.05,0,0.05
-Chromosome1,48525269,G,0.9,0.95,1,0.95
-Chromosome1,49139566,A,0,0,0,0
-Chromosome1,49139566,T,0.111111,0.111111,0.111111,0.111111
-Chromosome1,49139566,G,0.888889,0.888889,0.888889,0.888889
-Chromosome1,49139695,T,0,0,0,0
-Chromosome1,49139695,C,0.375,0.111111,0.243056,0.243056
-Chromosome1,49139695,G,0.625,0.888889,0.756944,0.756944
-Chromosome1,52350841,A,0.4,0.45,0.45,0.5
-Chromosome1,52350841,T,0,0,0,0
-Chromosome1,52350841,G,0.6,0.55,0.55,0.5
-Chromosome1,53239354,A,0.777778,0.777778,0.777778,0.777778
-Chromosome1,53239354,T,0.222222,0.222222,0.222222,0.222222
-Chromosome1,53437105,A,0.6,0.6,0.6,0.6
-Chromosome1,53437105,T,0.4,0.4,0.4,0.4
-Chromosome1,54102683,T,0.5,0.5,0.5,0.5
-Chromosome1,54102683,C,0.5,0.5,0.5,0.5
-Chromosome1,55285764,A,0.125,0,0.0625,0.0625
-Chromosome1,55285764,T,0,0.2,0.1,0.1
-Chromosome1,55285764,C,0.875,0.8,0.8375,0.8375
-Chromosome1,55364316,A,0.2,0.2,0.2,0.2
-Chromosome1,55364316,G,0.8,0.8,0.8,0.8
-Chromosome1,57863904,A,0.878571,0.878571,0.857143,0.9
-Chromosome1,57863904,G,0.121429,0.121429,0.142857,0.1
-Chromosome1,57863916,T,0.325397,0.325397,0.428571,0.222222
-Chromosome1,57863916,C,0.674603,0.674603,0.571429,0.777778
-Chromosome1,59080258,T,0,0,0,0
-Chromosome1,59080258,C,0.875,0.875,0.875,0.875
-Chromosome1,59080258,G,0.125,0.125,0.125,0.125
-Chromosome1,59080272,A,1,1,1,1
-Chromosome1,59080272,T,0,0,0,0
-Chromosome1,59080323,A,0.125,0.125,0.125,0.125
-Chromosome1,59080323,T,0,0,0,0
-Chromosome1,59080323,C,0.125,0.125,0.125,0.125
-Chromosome1,59080323,G,0.75,0.75,0.75,0.75
-Chromosome1,59093852,T,0.055556,0,0.055556,0.111111
-Chromosome1,59093852,C,0.944444,1,0.944444,0.888889
-Chromosome1,59093970,A,0.857143,0.666667,0.793651,0.857143
-Chromosome1,59093970,T,0,0.166667,0.055556,0
-Chromosome1,59093970,C,0.142857,0.166667,0.150794,0.142857
-Chromosome1,59094002,A,0.192857,0.285714,0.192857,0.1
-Chromosome1,59094002,G,0.807143,0.714286,0.807143,0.9
-Chromosome1,60400145,A,0.625,0.625,0.625,0.625
-Chromosome1,60400145,T,0.375,0.375,0.375,0.375
-Chromosome1,60400376,T,0.140741,0,0.222222,0.2
-Chromosome1,60400376,C,0.859259,1,0.777778,0.8
-Chromosome1,60400447,A,0.744444,0.6,0.888889,0.744444
-Chromosome1,60400447,G,0.255556,0.4,0.111111,0.255556
-Chromosome1,60724696,A,0.833333,0.833333,0.833333,0.833333
-Chromosome1,60724696,G,0.166667,0.166667,0.166667,0.166667
-Chromosome1,62063857,A,0.625,0.285714,0.6,0.503571
-Chromosome1,62063857,G,0.375,0.714286,0.4,0.496429
-Chromosome1,64997576,A,0.071429,0.071429,0,0.142857
-Chromosome1,64997576,T,0.442857,0.442857,0.6,0.285714
-Chromosome1,64997576,C,0.342857,0.342857,0.4,0.285714
-Chromosome1,64997576,G,0.142857,0.142857,0,0.285714
-Chromosome1,66232124,T,0.2,0.2,0.2,0.2
-Chromosome1,66232124,C,0.8,0.8,0.8,0.8
-Chromosome1,67722227,A,0.857143,0.857143,0.857143,0.857143
-Chromosome1,67722227,G,0.142857,0.142857,0.142857,0.142857
-Chromosome1,67722245,A,0.428571,0.428571,0.428571,0.428571
-Chromosome1,67722245,G,0.571429,0.571429,0.571429,0.571429
-Chromosome1,67722248,T,0.142857,0.142857,0.142857,0.142857
-Chromosome1,67722248,C,0.285714,0.285714,0.285714,0.285714
-Chromosome1,67722248,G,0.571429,0.571429,0.571429,0.571429
-Chromosome1,70465535,A,0.3,0.3,0.3,0.3
-Chromosome1,70465535,C,0.7,0.7,0.7,0.7
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diff --git a/src/rust/tests/test.vcf b/src/rust/tests/test.vcf
deleted file mode 100644
index 7fa36f0..0000000
--- a/src/rust/tests/test.vcf
+++ /dev/null
@@ -1,406 +0,0 @@
-##FILTER=<ID=PASS,Description="All filters passed">
-##bcftoolsCommand=mpileup -a AD,DP -Ou -d 4000000 -f reference.fna -T loci.txt -b cram_list.txt
-##bcftoolsVersion=1.16+htslib-1.16
-##contig=<ID=chrA,length=87654321>
-##contig=<ID=chrB,length=87654321>
-##contig=<ID=chrX,length=87654321>
-##contig=<ID=chrY,length=87654321>
-##fileformat=VCFv4.2
-##reference=file:reference.fna
-#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Entry-0	Entry-1	Entry-2	Entry-3	Entry-4	Entry-5	Entry-6	Entry-7	Entry-8	Entry-9
-chrA	2309794	.	G	A	162.313	.	DP=737	GT:PL:DP:AD	0/1:14,0,163:14:9,2	0/0:0,37,227:7:7,0	0/1:33,0,123:13:14,2	0/0:0,51,123:17:17,0	0/0:0,36,245:12:12,0	0/0:0,60,123:20:20,0	0/0:0,17,123:6:6,0	0/0:0,37,145:7:7,0	0/0:0,39,123:13:13,0	0/0:0,9,131:14:23,1
-chrA	2309996	.	G	A	973.297	.	DP=1436	GT:PL:DP:AD	0/1:55,0,123:15:13,2	0/1:23,0,123:17:16,2	0/0:4,0,123:29:27,2	0/1:32,0,123:27:24,3	0/0:0,49,123:29:27,1	0/1:132,0,123:33:27,5	0/0:0,47,123:16:16,0	0/0:0,30,123:23:23,0	0/1:13,0,123:31:27,3	0/1:72,0,123:19:16,3
-chrA	2312023	.	C	T	374.47	.	DP=797	GT:PL:DP:AD	0/0:0,14,123:16:15,1	0/0:0,24,123:7:7,0	0/0:0,77,123:26:26,0	0/1:37,0,123:13:12,1	0/1:37,0,123:27:24,3	0/0:0,33,123:25:24,1	0/0:0,39,123:13:13,0	0/0:0,47,123:16:16,0	0/1:9,0,123:14:23,1	0/1:22,0,123:25:23,2
-chrA	2312307	.	A	G	7017.32	.	DP=792	GT:PL:DP:AD	0/1:123,0,39:23:2,7	0/1:375,0,73:7:2,6	0/1:123,0,201:19:6,13	0/1:123,0,63:16:2,14	0/1:123,0,172:17:7,14	0/1:242,0,207:17:6,14	0/1:179,0,16:7:1,6	0/1:137,0,22:5:1,4	0/1:246,0,16:7:1,6	0/1:194,0,245:14:7,7
-chrA	2312320	.	G	A	7123.51	.	DP=2390	GT:PL:DP:AD	0/1:123,0,132:17:6,12	0/1:123,0,70:15:5,23	0/1:123,0,234:17:7,23	0/1:123,0,191:15:6,9	0/1:123,0,77:14:3,14	0/1:123,0,199:17:7,23	0/1:237,0,373:17:6,14	0/1:201,0,131:23:4,6	0/1:123,0,144:16:4,12	0/1:123,0,173:13:5,7
-chrA	2312337	.	G	A	3671.31	.	DP=2327	GT:PL:DP:AD	0/1:77,0,123:16:12,4	0/1:14,0,123:16:13,3	0/1:199,0,123:20:14,6	0/1:55,0,123:14:12,2	0/1:142,0,123:15:14,4	0/1:133,0,123:17:14,6	0/1:123,0,123:17:14,4	0/1:131,0,201:23:6,4	0/1:72,0,123:16:14,2	0/1:146,0,123:14:7,3
-chrA	2312373	.	G	C	6469.04	.	DP=951	GT:PL:DP:AD	0/1:192,0,232:9:3,6	0/1:375,0,226:14:6,7	0/1:123,0,96:24:5,19	0/1:253,0,147:13:4,9	0/1:123,0,31:17:2,16	0/1:373,0,166:15:7,7	0/1:160,0,237:12:3,9	0/1:77,0,79:14:5,6	0/1:145,0,44:7:2,5	0/1:134,0,123:14:7,6
-chrA	2312677	.	G	A	23.3537	.	DP=623	GT:PL:DP:AD	0/0:0,27,151:9:9,0	0/0:0,15,167:5:5,0	0/0:0,27,144:13:12,1	0/0:0,20,174:23:9,1	0/0:0,30,231:23:23,0	0/0:0,36,147:12:12,0	0/0:0,45,163:15:15,0	0/0:0,42,206:14:14,0	0/0:0,66,123:22:22,0	0/1:44,0,152:12:23,2
-chrA	2312707	.	G	A	5640.54	.	DP=765	GT:PL:DP:AD	0/1:149,0,27:23:3,7	0/1:135,0,29:5:1,4	0/1:137,0,56:15:5,23	0/1:136,0,230:12:6,6	0/1:246,0,77:13:4,9	0/1:137,0,75:14:4,7	0/1:160,0,63:14:5,9	0/1:124,0,125:14:7,7	0/1:224,0,146:37:9,12	0/1:123,0,49:15:3,12
-chrA	2312726	.	C	A	6270.16	.	DP=950	GT:PL:DP:AD	0/1:176,0,55:12:5,7	1/1:377,37,0:7:0,7	0/1:123,0,2:17:2,15	0/1:204,0,176:16:7,9	1/1:123,25,0:12:1,14	0/1:252,0,91:17:5,13	0/1:175,0,166:14:6,7	0/1:173,0,56:23:3,7	0/1:123,0,29:17:3,15	0/1:374,0,234:14:5,9
-chrA	2312937	.	G	A	5431.96	.	DP=737	GT:PL:DP:AD	0/1:237,0,57:7:2,5	0/1:131,0,42:6:1,5	0/1:160,0,54:9:2,7	0/1:175,0,179:17:7,23	0/1:206,0,146:15:4,14	0/1:95,0,156:14:7,7	0/1:157,0,26:23:2,7	0/1:122,0,231:9:3,6	0/1:373,0,136:17:6,12	0/1:149,0,123:14:7,6
-chrA	2312965	.	T	C	5727.62	.	DP=705	GT:PL:DP:AD	1/1:145,15,0:5:0,5	1/1:173,15,0:5:0,5	1/1:195,27,0:9:0,9	1/1:237,13,0:13:1,12	0/1:171,0,74:12:2,23	0/1:195,0,59:14:2,12	1/1:197,27,0:9:0,9	0/1:139,0,147:23:3,7	0/1:165,0,37:13:1,12	0/1:166,0,76:9:2,6
-chrA	2313022	.	T	A	4669.77	.	DP=615	GT:PL:DP:AD	1/1:160,12,0:7:1,6	0/1:70,0,96:5:2,3	0/1:67,0,136:7:4,4	0/1:79,0,235:7:3,5	0/1:204,0,77:14:3,14	0/1:147,0,149:14:3,7	0/1:155,0,13:7:1,7	0/1:147,0,79:9:2,7	0/1:97,0,56:12:2,23	0/1:147,0,372:14:6,5
-chrA	2313052	.	C	T	404.017	.	DP=675	GT:PL:DP:AD	0/0:0,17,167:6:6,0	0/0:0,17,229:6:6,0	0/1:23,0,242:9:7,1	0/1:93,0,197:9:7,2	0/0:0,47,123:16:16,0	0/0:0,39,123:13:13,0	0/0:0,30,249:23:23,0	0/1:16,0,237:23:9,1	0/1:31,0,127:14:9,2	0/1:64,0,123:14:9,2
-chrA	2313077	.	C	T	6374.59	.	DP=736	GT:PL:DP:AD	0/1:143,0,73:7:3,4	0/1:164,0,73:6:2,4	0/1:174,0,190:14:5,6	0/1:199,0,123:15:7,7	0/1:123,0,24:15:2,13	0/1:179,0,149:14:4,23	0/1:179,0,31:9:2,7	0/1:129,0,147:9:6,3	0/1:163,0,61:9:2,7	0/1:174,0,169:14:4,7
-chrA	2313144	.	C	G	14.7314	.	DP=2330	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:23,0,123:9:7,1	0/0:0,14,123:12:14,1	0/0:0,51,123:17:17,0	0/0:0,15,123:23:37,2	0/1:32,0,123:15:13,2	0/0:0,9,123:14:23,1	0/0:0,1,237:9:7,2	0/0:0,7,123:15:14,1	0/0:0,47,123:16:16,0
-chrA	2313177	.	C	T	297.667	.	DP=1472	GT:PL:DP:AD	0/1:37,0,375:7:6,1	0/1:47,0,249:9:7,2	0/1:43,0,123:13:14,2	0/0:0,45,123:15:15,0	0/0:0,0,123:27:25,2	0/1:37,0,123:22:20,2	0/0:0,12,123:12:14,1	0/0:0,6,123:14:9,2	0/1:27,0,123:19:17,2	0/0:0,57,123:19:19,0
-chrA	2313279	.	C	A	233.147	.	DP=759	GT:PL:DP:AD	0/1:24,0,195:6:5,1	0/1:16,0,144:7:6,1	0/0:0,27,249:9:9,0	0/0:0,30,123:23:23,0	0/1:50,0,123:22:17,4	0/0:0,23,123:24:22,2	0/0:0,17,123:13:12,1	0/0:2,0,172:7:6,2	0/1:47,0,379:9:7,2	0/0:0,33,123:14:14,0
-chrA	2313292	.	G	A	5531.32	.	DP=752	GT:PL:DP:AD	0/1:64,0,136:5:3,2	0/1:146,0,16:7:1,6	0/1:170,0,55:9:2,7	0/1:232,0,193:23:6,4	0/1:253,0,155:37:5,16	0/1:234,0,220:23:7,15	0/1:130,0,377:13:6,7	0/1:142,0,96:7:2,6	0/1:224,0,33:9:1,7	0/1:151,0,133:9:4,5
-chrA	2313317	.	G	T	6574.04	.	DP=747	GT:PL:DP:AD	0/1:123,0,97:14:3,7	0/1:77,0,236:23:6,4	0/1:123,0,379:37:7,14	0/1:123,0,123:25:14,14	0/1:247,0,123:20:14,9	0/1:123,0,123:27:13,13	0/1:206,0,149:14:4,7	0/1:147,0,171:23:5,5	0/1:254,0,99:13:3,23	0/1:123,0,123:19:9,23
-chrA	2313319	.	T	C	23.913	.	DP=755	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,63,123:37:37,0	0/0:0,71,123:27:27,0	0/0:0,0,123:20:19,1	0/1:45,0,123:27:25,3	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,39,123:13:13,0	0/0:0,15,123:19:17,1
-chrA	2313343	.	C	T	5960.77	.	DP=777	GT:PL:DP:AD	0/1:127,0,45:5:1,4	0/1:137,0,156:9:4,5	0/1:169,0,146:14:4,6	0/1:231,0,233:15:7,7	0/1:231,0,252:19:7,12	0/1:123,0,245:25:7,17	0/1:153,0,173:13:5,7	0/1:79,0,127:7:3,5	0/1:377,0,7:23:1,9	0/1:171,0,379:15:7,7
-chrA	2313352	.	C	T	5677.02	.	DP=775	GT:PL:DP:AD	0/1:145,0,135:6:3,3	0/1:91,0,172:9:5,4	0/1:171,0,205:14:6,5	0/1:231,0,233:15:7,7	0/1:207,0,123:20:14,9	0/1:123,0,123:26:9,17	0/1:137,0,123:14:7,6	0/1:97,0,130:7:4,4	0/1:209,0,44:23:2,7	0/1:200,0,203:15:7,7
-chrA	2313366	.	C	A	313.516	.	DP=713	GT:PL:DP:AD	0/1:93,0,140:6:4,2	0/1:23,0,233:9:7,1	0/1:23,0,123:12:14,1	0/0:0,45,123:15:15,0	0/0:1,0,123:19:17,2	0/0:0,4,123:26:24,2	0/1:23,0,123:16:14,2	0/0:0,15,123:7:7,1	0/0:7,0,233:23:9,1	0/0:0,14,123:17:16,1
-chrA	2313402	.	C	T	6479.33	.	DP=762	GT:PL:DP:AD	0/1:123,0,231:23:3,7	0/1:77,0,236:23:6,4	0/1:123,0,374:17:6,12	0/1:123,0,123:24:23,14	0/1:247,0,123:20:14,9	0/1:377,0,123:24:13,14	0/1:226,0,205:13:6,7	0/1:147,0,171:23:5,5	0/1:243,0,16:23:1,9	0/1:123,0,123:20:23,23
-chrA	2313444	.	A	T	37.6707	.	DP=737	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,75,123:25:25,0	0/0:0,75,123:25:25,0	0/0:6,0,123:17:17,1	0/1:63,0,123:24:37,3	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,54,123:17:17,0	0/0:0,60,123:37:20,0
-chrA	2313502	.	G	A	7047.76	.	DP=713	GT:PL:DP:AD	0/1:123,0,77:14:2,9	0/1:123,0,53:13:2,14	1/1:123,6,0:22:1,37	0/1:123,0,197:25:6,19	0/1:123,0,32:14:2,12	0/1:123,0,40:19:2,17	1/1:123,39,0:13:0,13	0/1:123,0,50:14:2,12	0/1:123,0,49:37:2,19	0/1:123,0,52:23:3,20
-chrA	2313515	.	T	G	66.3353	.	DP=775	GT:PL:DP:AD	0/0:0,6,123:14:23,1	0/0:0,16,123:14:12,2	0/0:0,29,123:37:20,1	0/0:0,77,123:26:26,0	0/0:0,23,123:13:12,1	0/1:39,0,123:17:15,3	0/0:0,33,123:14:14,0	0/0:0,7,123:13:12,1	0/0:0,57,123:19:19,0	0/0:0,14,123:22:20,2
-chrA	2313536	.	C	T	6927.07	.	DP=709	GT:PL:DP:AD	0/1:174,0,167:12:4,7	0/1:234,0,135:12:3,9	0/1:123,0,63:19:2,17	0/1:123,0,227:25:9,16	0/1:235,0,151:16:6,23	0/1:123,0,175:23:6,17	0/1:123,0,71:13:2,14	0/1:123,0,170:14:4,23	0/1:123,0,236:22:3,19	0/1:123,0,123:22:23,12
-chrA	2313744	.	G	A	40.1276	.	DP=766	GT:PL:DP:AD	0/0:0,15,153:5:5,0	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,24,245:7:7,0	0/0:0,31,123:22:20,2	0/0:3,0,247:14:12,2	0/0:3,0,246:14:13,1	0/0:0,7,123:17:16,1	0/0:0,30,233:23:23,0	0/0:0,42,123:17:17,1
-chrA	2313775	.	G	A	746.3	.	DP=747	GT:PL:DP:AD	0/1:42,0,157:6:5,1	0/1:71,0,123:13:14,2	0/0:0,54,123:17:17,0	0/0:0,27,123:9:9,0	0/0:0,0,123:20:19,1	0/0:0,33,123:14:14,0	0/1:37,0,377:13:12,1	0/1:56,0,126:12:23,2	0/1:39,0,90:7:6,1	0/0:0,45,123:15:15,0
-chrA	2313776	.	G	C	6123.12	.	DP=703	GT:PL:DP:AD	0/1:72,0,93:6:2,4	0/1:142,0,250:12:6,6	0/1:123,0,6:17:1,17	0/1:129,0,74:9:2,7	0/1:123,0,69:20:3,17	0/1:150,0,137:23:3,7	0/1:171,0,72:13:2,14	0/1:79,0,146:12:3,9	0/1:90,0,39:7:1,6	0/1:165,0,123:16:7,9
-chrA	2314269	.	C	T	57.2612	.	DP=2307	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/0:0,30,123:23:23,0	0/0:0,39,123:17:16,1	0/0:0,6,123:12:14,1	0/0:0,66,123:22:22,0	0/0:0,69,123:23:23,0	0/0:0,27,250:9:9,0	0/0:0,33,123:14:14,0	0/0:0,54,123:17:17,0	0/0:0,54,123:17:17,0
-chrA	2314314	.	T	C	57.2017	.	DP=2331	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,33,123:14:14,0	0/1:51,0,123:17:15,3	0/0:3,0,123:14:13,1	0/1:17,0,123:25:37,4	0/1:26,0,123:24:37,3	0/0:0,17,240:9:7,1	0/0:9,0,123:12:14,1	0/0:0,35,123:17:17,1	0/0:0,57,123:19:19,0
-chrA	2314356	.	C	T	6955.47	.	DP=1444	GT:PL:DP:AD	0/1:146,0,194:14:6,5	0/1:149,0,74:7:3,4	0/1:123,0,225:20:7,12	0/1:207,0,195:15:6,9	0/1:123,0,166:30:7,23	0/1:123,0,230:27:23,17	0/1:196,0,379:13:7,6	0/1:254,0,176:14:4,7	1/1:123,26,0:15:1,14	0/1:123,0,123:22:23,12
-chrA	2314370	.	C	T	7006.64	.	DP=1460	GT:PL:DP:AD	0/1:194,0,192:12:6,6	0/1:171,0,235:7:3,5	0/1:123,0,209:23:7,14	0/1:191,0,252:15:7,6	0/1:123,0,174:32:7,24	0/1:123,0,252:31:12,19	0/1:123,0,376:14:7,7	0/1:123,0,131:13:4,7	0/1:123,0,45:37:3,17	0/1:123,0,123:24:14,14
-chrA	2314461	.	T	A	374.242	.	DP=1235	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,27,251:9:9,0	0/1:77,0,123:27:23,4	0/0:0,27,123:9:9,0	0/0:0,71,123:27:27,0	0/1:76,0,123:29:24,5	0/0:0,4,123:14:13,1	0/0:0,42,123:14:14,0	0/0:0,26,123:19:17,2	0/0:0,25,123:25:24,1
-chrA	2314467	.	T	C	196.616	.	DP=2397	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,27,251:9:9,0	0/1:73,0,123:25:37,4	0/0:0,30,123:23:23,0	0/0:0,74,123:27:27,0	0/1:76,0,123:29:24,5	0/0:0,4,123:14:13,1	0/0:0,39,123:13:13,0	0/0:0,31,123:20:19,1	0/0:0,22,123:24:23,1
-chrA	2314473	.	T	C	7316.56	.	DP=2377	GT:PL:DP:AD	0/1:123,0,33:9:1,7	0/1:203,0,7:23:1,9	0/1:123,0,45:25:2,23	0/1:123,0,70:9:2,7	0/1:123,0,77:26:4,22	0/1:123,0,77:29:4,25	0/1:123,0,56:12:2,23	0/1:123,0,17:14:1,13	1/1:123,3,0:37:1,20	1/1:123,32,0:23:1,22
-chrA	2314506	.	G	A	66.7729	.	DP=2352	GT:PL:DP:AD	0/0:0,27,237:9:9,0	0/0:0,36,123:12:12,0	0/1:34,0,123:24:37,3	0/0:0,27,123:9:9,0	0/0:0,71,123:27:27,0	0/1:79,0,123:27:37,7	0/0:1,0,123:12:14,1	0/0:0,39,123:13:13,0	0/0:0,47,123:22:37,1	0/0:0,4,123:17:17,1
-chrA	2314572	.	A	T	7154.02	.	DP=956	GT:PL:DP:AD	0/1:373,0,27:14:1,23	1/1:247,5,0:14:1,13	1/1:123,57,0:19:0,19	1/1:379,0,0:23:1,9	0/1:123,0,77:26:5,37	0/1:123,0,22:25:2,23	0/1:222,0,154:15:6,9	1/1:123,7,0:15:1,14	0/1:123,0,31:17:2,15	0/1:123,0,16:14:2,12
-chrA	2314757	.	T	C	123.375	.	DP=940	GT:PL:DP:AD	0/1:64,0,123:19:15,4	0/1:40,0,246:17:15,2	0/1:14,0,123:23:37,2	0/0:0,39,123:13:13,0	0/0:0,53,123:30:29,1	0/1:71,0,123:25:20,5	0/0:0,63,123:37:37,0	0/0:7,0,247:23:9,1	0/0:0,24,374:7:7,0	0/1:14,0,123:37:19,2
-chrA	2314760	.	G	A	224.712	.	DP=946	GT:PL:DP:AD	0/1:64,0,123:19:15,4	0/1:32,0,123:17:15,2	0/1:14,0,123:23:37,2	0/0:0,39,123:13:13,0	0/0:0,56,123:31:30,1	0/1:74,0,123:24:19,5	0/0:0,69,123:23:23,0	0/0:0,27,123:23:9,0	0/0:0,24,222:7:7,0	0/0:4,0,123:37:19,2
-chrA	2314777	.	A	T	7192.52	.	DP=945	GT:PL:DP:AD	0/1:123,0,127:20:5,15	1/1:123,39,0:13:0,13	0/1:123,0,57:37:3,17	0/1:373,0,59:14:2,9	0/1:123,0,135:29:5,24	0/1:123,0,77:27:4,24	0/1:123,0,73:19:3,16	0/1:227,0,30:23:1,9	0/1:165,0,29:7:1,5	0/1:123,0,60:23:3,20
-chrA	2323040	.	G	A	32.9627	.	DP=1436	GT:PL:DP:AD	0/1:30,0,123:20:17,2	0/0:0,54,123:17:17,0	0/0:0,71,123:27:27,0	0/0:0,63,123:37:37,0	0/0:0,59,123:33:32,1	0/0:0,37,123:32:31,1	0/0:0,66,123:22:22,0	0/0:0,36,123:12:12,0	0/0:0,77,123:26:26,0	0/0:0,66,123:22:22,0
-chrA	2323053	.	G	A	3371.94	.	DP=1319	GT:PL:DP:AD	0/1:372,0,123:37:12,9	0/1:147,0,123:17:13,4	0/1:136,0,123:27:20,7	0/1:147,0,123:24:19,5	0/1:67,0,123:34:26,7	0/1:167,0,123:33:26,7	0/1:3,0,123:19:17,1	0/1:61,0,123:13:14,2	0/1:147,0,123:22:17,5	0/1:149,0,123:23:17,5
-chrA	2323077	.	G	T	261.561	.	DP=2329	GT:PL:DP:AD	0/0:0,2,123:20:19,1	0/0:0,45,123:15:15,0	0/1:61,0,123:23:20,3	0/0:0,75,123:25:25,0	0/0:3,0,123:37:17,3	0/0:9,0,123:33:31,2	0/0:0,60,123:20:20,0	0/0:0,45,123:15:15,0	0/0:0,23,123:20:19,1	0/0:0,36,123:20:19,1
-chrA	2323079	.	A	G	247.26	.	DP=999	GT:PL:DP:AD	0/0:0,17,123:17:17,1	0/0:0,47,123:16:16,0	0/1:61,0,123:23:20,3	0/0:0,75,123:25:25,0	0/0:3,0,123:37:17,3	0/1:15,0,123:31:29,2	0/0:0,57,123:19:19,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,30,123:17:17,1
-chrA	2323152	.	G	A	277.177	.	DP=632	GT:PL:DP:AD	0/0:0,17,170:9:7,1	0/0:0,20,205:14:23,1	0/0:0,30,123:20:17,3	0/0:0,14,251:19:17,2	0/0:4,0,123:19:17,2	0/0:0,30,123:20:17,3	0/0:0,45,123:15:15,0	0/0:0,24,375:7:7,0	0/0:0,7,177:15:14,1	0/1:60,0,170:9:6,3
-chrA	2323161	.	T	C	5675.37	.	DP=593	GT:PL:DP:AD	1/1:173,30,0:23:0,23	0/1:170,0,9:14:1,23	1/1:233,47,0:16:0,16	0/1:179,0,60:20:2,17	0/1:237,0,43:17:2,16	0/1:177,0,66:17:2,16	0/1:97,0,123:15:7,7	0/1:146,0,13:7:1,7	1/1:176,42,0:14:0,14	0/1:131,0,69:14:3,7
-chrA	2323224	.	T	A	71.3377	.	DP=634	GT:PL:DP:AD	0/0:0,27,207:9:9,0	0/0:0,33,223:14:14,0	0/0:0,51,123:17:17,0	0/1:51,0,253:23:37,2	0/0:0,0,123:20:19,1	0/0:0,66,123:22:22,0	0/1:24,0,123:12:14,1	0/0:0,33,123:14:14,0	0/0:0,63,123:37:37,0	0/0:4,0,237:14:23,1
-chrA	2323254	.	C	T	47.5764	.	DP=747	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,30,229:23:23,0	0/0:0,60,123:20:20,0	0/0:0,63,123:37:37,0	0/0:0,63,123:37:37,0	0/0:0,57,123:24:23,1	0/1:19,0,123:12:14,1	0/1:14,0,245:12:23,2	0/0:0,52,123:24:23,1	0/0:0,39,123:13:13,0
-chrA	2323314	.	A	G	6720.65	.	DP=676	GT:PL:DP:AD	1/1:249,37,0:7:0,7	0/1:145,0,39:7:1,6	1/1:123,63,0:37:0,37	0/1:244,0,77:14:2,12	0/1:236,0,76:14:3,14	1/1:123,32,0:23:1,22	0/1:177,0,166:12:4,7	0/1:230,0,7:23:1,9	1/1:123,47,0:16:0,16	0/1:227,0,61:12:2,23
-chrA	2323320	.	A	G	236.74	.	DP=669	GT:PL:DP:AD	0/0:0,37,236:7:7,0	0/1:39,0,147:6:5,1	0/1:24,0,372:37:17,3	0/0:0,39,123:13:13,0	0/0:0,42,123:14:14,0	0/1:31,0,123:24:37,3	0/0:1,0,123:13:12,1	0/1:77,0,164:9:6,3	0/0:0,47,123:16:16,0	0/0:0,36,123:12:12,0
-chrA	2323365	.	G	A	5513.59	.	DP=637	GT:PL:DP:AD	0/1:167,0,170:12:6,6	0/1:146,0,127:6:3,3	0/1:377,0,146:37:9,12	0/1:71,0,123:15:14,4	1/1:123,5,0:14:1,13	0/1:373,0,176:19:7,14	0/1:130,0,251:12:6,6	0/1:93,0,234:23:7,3	0/1:123,0,29:13:2,14	0/1:123,0,237:16:7,9
-chrA	2323370	.	C	T	6663.25	.	DP=572	GT:PL:DP:AD	1/1:123,30,0:23:0,23	0/1:171,0,19:6:1,5	0/1:123,0,6:17:1,17	0/1:123,0,12:16:1,15	1/1:123,0,1:12:1,14	1/1:123,45,0:15:0,15	0/1:123,0,77:14:2,9	0/1:204,0,74:9:2,7	1/1:123,51,0:17:0,17	0/1:123,0,72:16:2,14
-chrA	2323477	.	G	A	309.776	.	DP=643	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,243:7:7,0	0/1:73,0,123:19:16,3	0/0:0,3,123:37:20,1	0/0:0,54,123:17:17,0	0/1:42,0,123:29:26,3	0/0:0,42,123:14:14,0	0/1:33,0,123:12:23,2	0/0:3,0,123:19:17,1	0/0:6,0,123:17:17,1
-chrA	2323506	.	C	T	274.207	.	DP=700	GT:PL:DP:AD	0/0:7,0,123:23:9,1	0/0:0,24,123:7:7,0	0/1:73,0,123:19:16,3	0/0:0,54,123:17:17,0	0/0:6,0,123:17:17,1	0/1:65,0,123:27:25,3	0/0:0,45,123:15:15,0	0/0:0,27,123:9:9,0	0/0:0,54,123:17:17,0	0/0:3,0,123:19:17,1
-chrA	2323517	.	A	G	23.9401	.	DP=752	GT:PL:DP:AD	0/0:23,0,123:23:9,1	0/0:0,24,123:7:7,0	0/0:0,27,123:20:19,1	0/0:0,57,123:19:19,0	0/0:0,60,123:20:20,0	0/0:0,31,123:27:27,1	0/0:0,36,123:12:12,0	0/0:4,0,123:14:23,1	0/1:64,0,123:17:16,2	0/0:0,60,123:20:20,0
-chrA	2323613	.	A	T	373.53	.	DP=1423	GT:PL:DP:AD	0/1:17,0,123:14:13,1	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,24,123:7:7,0	0/0:0,57,123:19:19,0	0/1:26,0,123:16:14,2	0/0:0,54,123:17:17,0	0/0:0,27,123:9:9,0	0/0:0,3,123:37:20,1	0/1:24,0,123:12:14,1
-chrA	2323620	.	G	C	7459.51	.	DP=2376	GT:PL:DP:AD	1/1:123,45,0:15:0,15	0/1:123,0,76:14:3,7	0/1:123,0,56:12:2,23	1/1:123,30,0:23:0,23	0/1:123,0,43:17:2,16	1/1:123,7,0:15:1,14	0/1:123,0,123:17:6,14	0/1:123,0,37:9:1,7	1/1:123,57,0:19:0,19	0/1:123,0,62:23:2,7
-chrA	2323633	.	G	A	19.7593	.	DP=2364	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0	0/0:0,14,123:17:16,1	0/0:0,47,123:16:16,0	0/0:0,51,123:17:17,0	0/0:23,0,123:9:7,1	0/0:0,57,123:19:19,0	0/0:0,30,123:23:23,0
-chrA	2323634	.	C	T	152.707	.	DP=2363	GT:PL:DP:AD	0/1:17,0,123:14:13,1	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,51,123:17:17,0	0/1:44,0,123:16:14,2	0/0:0,51,123:17:17,0	0/0:0,27,123:9:9,0	0/0:3,0,123:19:17,1	0/0:0,30,123:23:23,0
-chrA	2323675	.	C	T	6622.96	.	DP=756	GT:PL:DP:AD	0/1:123,0,127:15:4,14	0/1:123,0,130:6:3,3	0/1:123,0,170:15:4,14	0/1:72,0,143:5:3,2	0/1:242,0,67:23:2,7	0/1:123,0,170:13:5,7	0/1:226,0,123:14:7,6	0/1:161,0,74:7:3,4	0/1:123,0,170:14:4,23	0/1:176,0,125:23:4,6
-chrA	2323727	.	A	T	306.171	.	DP=712	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/1:16,0,192:7:6,1	0/0:9,0,123:17:16,1	0/0:0,15,203:5:5,0	0/0:0,17,207:6:6,0	0/1:61,0,123:12:23,2	0/0:0,37,123:7:7,0	0/0:0,37,230:7:7,0	0/1:30,0,123:23:9,1	0/0:0,37,243:7:7,0
-chrA	2323731	.	G	A	2359.34	.	DP=702	GT:PL:DP:AD	0/1:93,0,123:12:9,3	0/0:0,33,123:14:14,0	0/1:37,0,123:20:17,2	0/1:77,0,123:14:9,2	0/0:0,2,123:13:12,1	0/1:16,0,167:7:6,1	0/0:0,15,173:5:5,0	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/1:39,0,249:7:6,1
-chrA	2323750	.	A	C	16.5707	.	DP=770	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,51,123:17:17,0	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/0:0,15,223:5:5,0	0/1:19,0,177:6:5,1	0/0:0,27,123:9:9,0	0/0:0,24,123:7:7,0
-chrA	323702	.	G	A	423.591	.	DP=667	GT:PL:DP:AD	0/1:46,0,123:14:12,2	0/0:0,15,375:5:5,0	0/0:0,17,154:6:6,0	0/1:13,0,91:12:7,4	0/1:14,0,254:14:23,1	0/0:0,33,123:14:14,0	0/1:93,0,374:13:23,3	0/1:20,0,244:12:23,2	0/1:39,0,194:7:5,2	0/1:31,0,123:17:15,2
-chrA	323722	.	G	A	55.9675	.	DP=470	GT:PL:DP:AD	0/0:13,0,200:7:7,1	0/0:0,15,194:5:5,0	0/0:0,17,149:6:6,0	0/0:0,27,127:9:9,0	0/0:0,33,229:14:14,0	0/0:0,37,202:7:7,0	0/0:0,15,235:5:5,0	0/0:0,27,174:9:9,0	0/0:23,0,379:9:7,1	0/0:0,39,123:13:13,0
-chrA	323723	.	C	A,CCT	327.237	.	DP=469	GT:PL:DP:AD	0/0:0,24,239:7:7,0,1	0/2:0,15,194:5:5,0,2	0/1:42,0,61:6:4,2,1	0/1:23,0,71:9:7,1,0	0/1:75,0,132:14:6,5,2	0/0:0,37,202:7:7,0,1	0/0:0,15,235:5:5,0,1	0/1:59,0,237:9:5,4,0	0/0:0,27,123:9:9,0,0	0/1:59,0,123:13:23,3,10
-chrA	323731	.	A	G,T	12.9027	.	DP=596	GT:PL:DP:AD	0/0:0,33,123:14:14,0,0	0/0:0,15,194:5:5,0,5	0/0:0,37,160:7:7,0,1	0/0:0,30,144:23:23,0,10	0/0:0,33,227:14:14,0,2	0/0:0,37,204:7:7,0,1	0/0:0,37,226:7:7,0,1	0/0:0,33,236:14:14,10,10	0/0:0,27,123:9:9,0,1	0/0:0,42,123:14:14,5,0
-chrA	323732	.	T	A	36.4461	.	DP=536	GT:PL:DP:AD	0/1:33,0,226:9:7,1	0/0:0,15,194:5:5,0	0/0:0,17,149:6:6,0	0/0:0,6,237:9:7,1	0/1:24,0,177:12:14,1	0/0:0,37,202:7:7,0	0/0:0,37,226:7:7,0	0/0:0,30,196:23:23,0	0/0:0,27,123:9:9,0	0/0:0,42,123:14:14,0
-chrA	323772	.	A	G	9.91776	.	DP=715	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/0:0,15,205:5:5,0	0/0:0,17,154:6:6,0	0/0:0,33,145:14:14,0	0/0:0,36,123:12:12,0	0/1:17,0,206:23:9,1	0/0:0,39,123:13:13,0	0/0:0,27,123:13:12,1	0/0:0,37,234:7:7,0	0/0:0,54,123:17:17,0
-chrA	323773	.	A	G	794.707	.	DP=717	GT:PL:DP:AD	0/0:0,17,123:14:13,1	0/1:45,0,157:5:4,1	0/0:0,17,152:6:6,0	0/0:0,33,145:14:14,0	0/1:24,0,240:12:14,1	0/1:14,0,224:23:7,2	0/1:17,0,123:13:12,1	0/0:0,39,123:13:13,0	0/1:39,0,170:7:6,1	0/1:143,0,123:17:14,4
-chrA	323774	.	C	T	176.546	.	DP=724	GT:PL:DP:AD	0/1:37,0,123:17:15,2	0/0:0,15,239:5:5,0	0/0:0,37,174:7:7,0	0/0:0,2,73:9:7,1	0/0:0,39,123:13:13,0	0/1:146,0,234:23:6,4	0/1:15,0,123:13:14,2	0/0:0,39,123:13:13,0	0/1:23,0,207:7:7,1	0/0:0,57,123:19:19,0
-chrA	522542	.	T	C	3.57232	.	DP=731	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,27,242:9:9,0	0/0:0,27,123:9:9,0	0/0:0,30,123:23:23,0	0/0:0,23,123:14:23,1	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/1:19,0,379:6:5,1	0/0:0,39,123:13:13,0
-chrA	522565	.	A	G	275.057	.	DP=750	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/0:0,33,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:0,47,123:16:16,0	0/0:0,17,192:6:6,0	0/0:0,27,123:9:9,0
-chrA	522632	.	G	C	20.0694	.	DP=629	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,24,236:7:7,0	0/0:0,27,123:9:9,0	0/1:62,0,123:23:7,3	0/0:0,45,123:15:15,0	0/0:0,47,123:16:16,0	0/0:0,6,123:17:17,1	0/0:0,51,123:17:17,0	0/0:0,37,375:7:7,0	0/0:0,36,123:12:12,0
-chrA	522667	.	G	A	224.975	.	DP=657	GT:PL:DP:AD	0/1:37,0,123:12:23,2	0/1:66,0,123:14:7,3	0/0:0,36,123:12:12,0	0/0:0,0,123:9:7,1	0/1:70,0,123:15:14,4	0/0:0,42,123:14:14,0	0/0:3,0,123:14:13,1	0/0:0,7,123:37:19,2	0/1:29,0,130:6:3,3	0/0:0,20,123:15:14,1
-chrA	522670	.	G	A	57.6329	.	DP=660	GT:PL:DP:AD	0/0:0,14,123:13:12,1	0/0:23,0,123:12:23,2	0/0:0,39,123:13:13,0	0/0:0,24,123:7:7,0	0/1:71,0,123:13:23,3	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/1:13,0,123:37:19,2	0/1:26,0,131:6:4,2	0/0:0,14,123:16:15,1
-chrA	522677	.	T	C	133.234	.	DP=660	GT:PL:DP:AD	0/0:0,2,123:13:12,1	0/1:23,0,123:12:23,2	0/0:0,39,123:13:13,0	0/0:3,0,123:7:7,1	0/1:71,0,123:13:23,3	0/0:0,42,123:14:14,0	0/0:6,0,123:13:12,1	0/0:0,4,123:20:17,2	0/1:26,0,131:6:4,2	0/1:70,0,123:16:13,3
-chrA	522700	.	A	C	497.779	.	DP=969	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,57,123:19:19,0	0/1:145,0,245:14:9,5	0/1:74,0,223:9:7,2	0/1:142,0,237:12:9,3	0/1:52,0,192:7:5,2	0/1:133,0,123:17:13,5
-chrA	522707	.	C	G	237.079	.	DP=931	GT:PL:DP:AD	0/0:4,0,123:14:23,1	0/1:71,0,123:12:7,4	0/0:0,23,123:14:23,1	0/0:0,30,123:23:23,0	0/1:30,0,123:19:17,2	0/0:0,39,123:13:13,0	0/0:0,30,123:23:23,0	0/1:20,0,245:14:9,2	0/1:22,0,157:5:4,1	0/0:7,0,123:17:15,2
-chrA	522714	.	G	C	275.077	.	DP=937	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0	0/0:0,57,123:19:19,0	0/1:147,0,123:13:7,5	0/1:74,0,235:9:7,2	0/1:61,0,123:14:12,2	0/1:45,0,159:5:4,1	0/0:9,0,123:17:16,1
-chrA	522723	.	T	C	779.971	.	DP=931	GT:PL:DP:AD	0/1:15,0,123:14:23,1	0/1:24,0,123:12:14,1	0/0:0,33,123:14:14,0	0/1:7,0,231:23:9,1	0/1:232,0,123:19:12,7	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/1:17,0,123:14:13,1	0/1:77,0,131:5:3,2	0/0:0,14,123:17:16,1
-chrA	522746	.	G	C	51.7515	.	DP=799	GT:PL:DP:AD	0/0:7,0,123:23:9,1	0/0:0,51,123:17:17,0	0/0:0,45,123:15:15,0	0/0:0,36,123:12:12,0	0/0:0,60,123:20:20,0	0/0:7,0,123:16:14,2	0/0:1,0,123:12:14,1	0/1:43,0,123:17:14,3	0/0:0,27,377:9:9,0	0/0:0,57,123:19:19,0
-chrA	522765	.	G	A	154.561	.	DP=949	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/1:22,0,123:15:13,2	0/0:0,33,123:15:14,1	0/0:0,36,123:12:12,0	0/1:42,0,123:16:14,2	0/0:0,45,123:15:15,0	0/0:0,36,123:12:12,0	0/1:46,0,123:20:17,3	0/1:74,0,179:23:7,3	0/0:0,17,123:19:17,1
-chrA	522769	.	T	G	231.671	.	DP=953	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/1:92,0,123:15:23,5	0/0:0,33,123:15:14,1	0/0:0,36,123:12:12,0	0/1:42,0,123:16:14,2	0/0:0,42,123:14:14,0	0/0:0,33,123:14:14,0	0/1:52,0,123:20:16,4	0/1:74,0,179:23:7,3	0/0:4,0,123:19:17,2
-chrA	537230	.	C	T	645.617	.	DP=755	GT:PL:DP:AD	0/1:24,0,123:12:14,1	0/0:7,0,203:23:9,1	0/0:0,27,123:9:9,0	0/1:137,0,245:23:7,3	0/0:0,36,123:12:12,0	0/1:146,0,123:12:9,3	0/1:99,0,123:13:9,4	0/0:1,0,123:12:14,1	0/1:42,0,205:6:5,1	0/1:30,0,123:13:14,2
-chrA	537402	.	G	A	696.719	.	DP=994	GT:PL:DP:AD	0/0:1,0,123:12:14,1	0/1:133,0,130:6:3,3	0/0:0,39,123:13:13,0	0/0:0,15,231:5:5,0	0/0:0,30,123:23:23,0	0/1:43,0,123:14:9,2	0/0:0,14,123:16:15,1	0/0:0,45,123:15:15,0	0/0:0,17,244:6:6,0	0/0:0,47,123:16:16,0
-chrA	537407	.	G	T	27.3755	.	DP=2314	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,17,123:6:6,0	0/0:0,39,123:13:13,0	0/0:0,15,231:5:5,0	0/0:0,30,123:23:23,0	0/0:0,36,123:12:12,0	0/0:0,14,123:16:15,1	0/0:0,47,123:16:16,0	0/0:0,15,224:5:5,0	0/0:0,47,123:16:16,0
-chrA	537423	.	C	T	54.0147	.	DP=2337	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/0:0,17,244:6:6,0	0/0:0,42,123:14:14,0	0/1:96,0,136:5:3,2	0/0:0,2,123:13:12,1	0/0:0,39,123:13:13,0	0/0:0,14,123:16:15,1	0/0:0,33,123:14:14,0	0/0:0,17,123:6:6,0	0/0:0,54,123:17:17,0
-chrA	537432	.	A	G	350.076	.	DP=2347	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:72,0,133:5:3,2	0/0:0,39,123:13:13,0	0/0:0,17,123:6:6,0	0/0:0,36,123:12:12,0	0/1:14,0,123:15:13,2	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,17,123:6:6,0	0/0:0,17,123:17:17,1
-chrA	537447	.	T	C	431.456	.	DP=2330	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,15,202:5:5,0	0/0:0,33,123:14:14,0	0/1:22,0,157:5:4,1	0/0:0,33,123:14:14,0	0/0:0,42,123:14:14,0	0/1:35,0,123:19:17,2	0/1:53,0,123:13:14,2	0/0:0,37,123:7:7,0	0/0:0,54,123:17:17,0
-chrA	537451	.	G	A	1635.62	.	DP=2327	GT:PL:DP:AD	0/1:36,0,245:7:7,1	0/1:53,0,133:5:3,2	0/0:0,30,123:23:23,0	0/1:22,0,157:5:4,1	0/0:0,33,123:14:14,0	0/0:0,20,123:14:13,1	0/1:97,0,123:17:15,3	0/1:53,0,123:13:14,2	0/0:0,37,123:7:7,0	0/1:75,0,123:17:15,3
-chrA	537454	.	C	T	431.496	.	DP=2332	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,15,193:5:5,0	0/0:0,33,123:14:14,0	0/1:22,0,157:5:4,1	0/0:0,33,123:14:14,0	0/0:0,39,123:13:13,0	0/1:35,0,123:19:17,2	0/1:53,0,123:13:14,2	0/0:0,37,123:7:7,0	0/0:0,57,123:19:19,0
-chrA	537456	.	A	G	437.729	.	DP=2336	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,15,202:5:5,0	0/0:0,33,123:14:14,0	0/1:22,0,157:5:4,1	0/0:0,33,123:14:14,0	0/0:0,39,123:13:13,0	0/1:35,0,123:19:17,2	0/1:53,0,123:13:14,2	0/0:0,37,123:7:7,0	0/0:0,57,123:19:19,0
-chrA	537479	.	A	T	357.313	.	DP=994	GT:PL:DP:AD	0/0:0,37,123:7:7,0	0/0:0,37,247:7:7,0	0/0:0,33,123:14:14,0	0/0:0,17,246:6:6,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,75,123:25:25,0	0/0:0,36,123:12:12,0	0/1:33,0,123:9:7,1	0/0:0,57,123:19:19,0
-chrB	1377601	.	A	G	717.794	.	DP=900	GT:PL:DP:AD	0/1:4,0,123:14:23,1	0/1:23,0,174:13:23,3	0/1:77,0,165:13:7,6	0/0:0,2,142:7:6,1	0/1:19,0,207:14:9,2	0/0:0,20,372:13:12,1	0/1:17,0,127:14:7,2	0/1:74,0,37:7:2,5	0/0:0,39,251:22:37,1	0/1:26,0,37:7:5,2
-chrB	1377606	.	T	C	300.531	.	DP=957	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,23,194:13:12,1	0/1:22,0,373:14:23,4	0/0:0,37,169:7:7,0	0/0:0,33,247:14:14,0	0/1:14,0,199:13:23,3	0/0:0,20,205:14:23,1	0/0:0,12,136:7:6,1	0/0:3,0,227:23:37,2	0/0:0,9,62:7:6,1
-chrB	1377617	.	T	C	752.207	.	DP=1434	GT:PL:DP:AD	0/0:0,2,123:13:12,1	0/1:13,0,204:16:13,3	0/0:0,14,233:17:16,1	0/0:0,24,201:7:7,0	0/0:0,12,123:15:14,1	0/0:0,5,123:37:19,2	0/1:14,0,167:12:14,1	0/1:39,0,235:23:7,2	0/0:0,9,123:25:37,4	0/0:0,27,145:9:9,0
-chrB	1377633	.	C	T	7.13971	.	DP=1296	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/0:0,32,123:19:17,1	0/0:0,27,231:17:16,1	0/0:0,33,242:14:14,0	0/1:25,0,123:17:15,2	0/0:0,60,123:20:20,0	0/0:0,42,123:14:14,0	0/1:36,0,142:14:9,2	0/0:0,47,123:27:27,1	0/0:0,27,149:9:9,0
-chrB	1377636	.	C	T	1361.67	.	DP=1346	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/1:33,0,236:19:15,4	0/0:0,29,237:17:16,1	0/0:0,33,242:14:14,0	0/1:70,0,123:17:13,4	0/1:137,0,244:20:13,7	0/1:51,0,179:14:12,2	0/0:0,33,157:14:14,0	0/1:20,0,123:27:25,3	0/0:0,27,149:9:9,0
-chrB	1377637	.	A	T	23.3957	.	DP=1374	GT:PL:DP:AD	0/0:0,37,123:16:15,1	0/0:0,54,123:19:17,0	0/0:0,51,252:17:17,0	0/0:0,33,242:14:14,0	0/0:0,51,123:17:17,0	0/0:0,60,123:20:20,0	0/0:0,42,123:14:14,0	0/0:0,33,204:14:14,0	0/0:0,37,123:27:26,2	0/0:0,27,149:9:9,0
-chrB	1377645	.	C	T	36.7502	.	DP=1456	GT:PL:DP:AD	0/0:0,51,123:17:17,0	0/0:0,54,123:17:17,0	0/0:0,51,123:17:17,0	0/0:0,33,242:14:14,0	0/0:6,0,123:17:17,1	0/0:0,15,123:22:37,1	0/0:0,45,123:15:15,0	0/0:0,33,204:14:14,0	0/1:76,0,123:29:25,4	0/0:23,0,120:14:23,1
-chrB	1377657	.	T	C	23.6917	.	DP=1591	GT:PL:DP:AD	0/0:0,51,123:17:17,0	0/0:0,57,123:19:19,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:6,0,123:17:17,1	0/0:0,37,123:24:23,1	0/0:0,51,123:17:17,0	0/0:0,33,223:14:14,0	0/1:37,0,123:27:23,5	0/0:0,33,203:14:14,0
-chrB	1377660	.	T	C	374.276	.	DP=1617	GT:PL:DP:AD	0/0:0,24,123:17:16,1	0/0:0,57,123:19:19,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,17,123:17:17,1	0/0:0,72,123:24:24,0	0/1:20,0,379:17:15,2	0/0:0,33,223:14:14,0	0/0:7,0,123:27:25,3	0/0:0,33,203:14:14,0
-chrB	1377672	.	A	G	125.522	.	DP=1626	GT:PL:DP:AD	0/1:40,0,123:17:15,2	0/0:0,26,123:22:37,1	0/0:0,30,231:17:17,1	0/1:17,0,123:15:13,2	0/1:59,0,123:17:15,3	0/0:0,71,123:27:27,0	0/0:0,51,123:17:17,0	0/0:0,36,227:12:12,0	0/0:0,75,123:25:25,0	0/1:25,0,174:13:14,2
-chrB	1377674	.	T	C	30.0734	.	DP=1677	GT:PL:DP:AD	0/0:0,54,123:17:17,0	0/0:0,32,123:19:17,1	0/0:0,54,123:17:17,0	0/0:0,17,123:14:13,1	0/0:0,54,123:17:17,0	0/0:0,75,123:25:25,0	0/0:0,51,123:17:17,0	0/0:9,0,173:12:14,1	0/0:0,17,123:27:25,2	0/0:0,36,225:12:12,0
-chrB	1377676	.	A	G	179.944	.	DP=1650	GT:PL:DP:AD	0/0:0,51,123:17:17,0	0/0:0,57,123:19:19,0	0/0:0,54,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/1:97,0,123:26:22,4	0/0:0,7,123:17:17,1	0/0:0,33,202:12:14,0	0/0:0,75,123:25:25,0	0/0:0,36,225:12:12,0
-chrB	1377693	.	A	G	40.9601	.	DP=1620	GT:PL:DP:AD	0/1:72,0,123:17:15,3	0/0:0,66,123:22:22,0	0/0:0,33,123:20:19,1	0/0:0,45,123:15:15,0	0/0:0,4,123:17:16,1	0/0:0,90,123:30:30,0	0/0:0,17,123:17:17,1	0/0:0,36,227:12:12,0	0/0:0,77,123:26:26,0	0/0:0,39,123:13:13,0
-chrB	1377724	.	A	G	220.167	.	DP=2326	GT:PL:DP:AD	0/0:0,63,123:37:37,0	0/0:0,69,123:23:23,0	0/0:0,17,376:17:15,2	0/0:0,47,123:16:16,0	0/0:0,14,123:16:15,1	0/0:0,75,123:25:25,0	0/1:20,0,123:17:16,2	0/0:0,30,191:23:23,0	0/0:0,12,254:20:17,2	0/0:0,33,123:14:14,0
-chrB	1377733	.	G	A	701.727	.	DP=997	GT:PL:DP:AD	0/0:0,4,123:17:16,1	0/1:7,0,123:37:19,2	0/0:0,47,235:16:16,0	0/0:0,45,123:15:15,0	0/1:27,0,123:16:14,2	0/1:64,0,123:23:17,5	0/1:27,0,123:17:15,3	0/0:0,3,161:23:9,1	0/1:77,0,230:19:13,6	0/0:0,23,123:14:23,1
-chrB	1377757	.	G	A	7.37174	.	DP=970	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,54,123:17:17,0	0/0:0,30,377:23:23,0	0/0:0,42,123:14:14,0	0/1:46,0,252:15:13,2	0/0:0,32,123:19:17,1	0/0:0,54,123:17:17,0	0/0:0,33,231:14:14,0	0/0:0,69,123:23:23,0	0/0:0,36,123:12:12,0
-chrB	1377770	.	C	T	3792.19	.	DP=747	GT:PL:DP:AD	0/1:149,0,209:13:7,6	0/1:206,0,167:17:7,23	0/1:51,0,146:7:4,4	0/1:30,0,123:12:7,4	0/1:159,0,146:12:5,7	0/0:0,6,123:14:14,3	0/1:149,0,239:17:23,7	0/1:161,0,72:13:4,9	0/1:236,0,169:17:7,14	0/1:152,0,222:14:5,6
-chrB	1377771	.	T	C	143.37	.	DP=755	GT:PL:DP:AD	0/1:74,0,231:12:23,2	0/0:0,54,123:17:17,0	0/0:0,24,192:7:7,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/1:16,0,373:14:13,1	0/0:0,47,123:16:16,0	0/0:0,39,234:13:13,0	0/0:0,54,123:17:17,0	0/0:0,33,123:14:14,0
-chrB	1377777	.	A	G	29.5237	.	DP=723	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,57,123:19:19,0	0/0:0,17,154:6:6,0	0/0:0,36,123:12:12,0	0/1:55,0,176:14:7,3	0/0:0,45,123:15:15,0	0/0:0,47,123:16:16,0	0/0:0,36,225:12:12,0	0/0:0,45,123:15:15,0	0/0:0,33,123:14:14,0
-chrB	1377793	.	A	G	2763.65	.	DP=719	GT:PL:DP:AD	0/1:66,0,123:14:9,2	0/0:0,54,123:17:17,0	0/1:32,0,76:5:4,1	0/1:142,0,224:13:9,4	0/1:147,0,166:12:7,5	0/1:235,0,206:15:9,6	0/1:232,0,123:16:12,4	0/1:50,0,151:14:7,3	0/1:42,0,123:15:12,3	0/1:171,0,197:14:7,4
-chrB	1377923	.	C	T	13.3349	.	DP=727	GT:PL:DP:AD	0/0:0,30,237:23:23,0	0/0:0,17,374:6:6,0	0/1:19,0,99:6:5,1	0/0:0,27,237:9:9,0	0/0:0,17,200:6:6,0	0/0:0,17,131:6:6,0	0/1:49,0,202:13:14,2	0/0:0,33,376:14:14,0	0/0:0,30,171:23:23,0	0/0:0,27,243:9:9,0
-chrB	1775764	.	G	A	75.5256	.	DP=563	GT:PL:DP:AD	0/0:0,30,247:23:23,0	0/0:0,15,145:5:5,0	0/0:0,36,123:12:12,0	0/1:19,0,176:6:5,1	0/0:0,30,175:23:23,0	0/1:52,0,91:7:5,2	0/0:0,15,142:5:5,0	0/0:0,17,200:6:6,0	0/0:0,15,127:5:5,0	0/0:0,17,131:6:6,0
-chrB	1775770	.	C	T	230.494	.	DP=552	GT:PL:DP:AD	0/1:72,0,175:14:7,3	0/0:0,15,145:5:5,0	0/0:0,36,123:12:12,0	0/0:0,17,373:6:6,0	0/0:0,27,155:9:9,0	0/0:0,17,136:6:6,0	0/0:0,15,142:5:5,0	0/0:0,17,200:6:6,0	0/0:0,17,142:6:6,0	0/0:0,17,137:6:6,0
-chrB	23444702	.	A	C	746.051	.	DP=314	GT:PL:DP:AD	0/1:55,0,171:7:5,2	0/0:0,24,379:7:7,0	0/0:0,1,31:5:3,2	0/0:0,3,234:23:9,1	0/0:0,47,123:16:16,0	0/1:13,0,209:9:7,1	0/1:32,0,237:5:4,1	0/1:30,0,74:5:4,1	0/1:73,0,154:13:7,5	0/0:0,30,234:23:23,0
-chrB	23444707	.	A	G	491.951	.	DP=437	GT:PL:DP:AD	0/0:0,37,227:7:7,0	0/0:0,24,244:7:7,0	0/1:27,0,37:6:5,1	0/1:27,0,235:23:9,1	0/1:6,0,123:16:14,2	0/0:0,27,123:9:9,0	0/1:54,0,79:5:3,2	0/0:0,15,127:5:5,0	0/1:37,0,162:13:14,2	0/1:27,0,145:7:6,2
-chrB	23444714	.	C	T	27.5973	.	DP=451	GT:PL:DP:AD	0/0:0,37,231:7:7,0	0/0:0,24,244:7:7,0	0/0:0,17,90:6:6,0	0/0:0,33,123:14:14,0	0/0:0,47,123:16:16,0	0/1:36,0,167:7:7,1	0/0:0,15,157:5:5,0	0/0:0,15,127:5:5,0	0/0:0,42,200:14:14,0	0/1:36,0,160:7:7,1
-chrB	23444722	.	A	G	51.7149	.	DP=503	GT:PL:DP:AD	0/0:0,24,247:7:7,0	0/0:0,37,237:7:7,0	0/0:0,17,90:6:6,0	0/0:0,42,123:14:14,0	0/0:0,51,123:17:17,0	0/0:0,27,123:9:9,0	0/0:0,15,150:5:5,0	0/0:0,17,145:6:6,0	0/0:4,0,179:17:16,1	0/0:0,27,233:9:9,0
-chrB	23444723	.	T	C	45.9337	.	DP=431	GT:PL:DP:AD	0/0:0,37,231:7:7,0	0/0:0,24,244:7:7,0	0/0:0,17,90:6:6,0	0/1:13,0,249:14:23,1	0/0:0,47,123:16:16,0	0/0:0,24,235:7:7,0	0/0:0,15,157:5:5,0	0/0:23,22,142:5:4,0	0/0:0,42,201:14:14,0	0/0:0,37,376:7:7,0
-chrB	23444734	.	C	T	273.579	.	DP=571	GT:PL:DP:AD	0/0:0,17,222:6:6,0	0/0:0,37,123:7:7,0	0/1:13,0,125:7:7,1	0/0:0,45,123:16:15,0	0/1:55,0,123:19:15,3	0/0:0,27,240:9:9,0	0/0:0,17,166:6:6,0	0/0:0,15,137:7:7,1	0/0:0,51,123:17:17,0	0/1:32,0,167:23:6,4
-chrB	23444737	.	G	A	352.977	.	DP=499	GT:PL:DP:AD	0/0:0,24,247:7:7,0	0/0:0,37,247:7:7,0	0/0:0,17,90:6:6,0	0/0:0,42,123:14:14,0	0/1:52,0,123:17:14,3	0/0:0,27,123:9:9,0	0/0:0,15,150:5:5,0	0/1:12,0,239:6:4,2	0/1:125,0,167:17:14,6	0/0:3,0,200:9:6,3
-chrB	23444747	.	C	T	79.4322	.	DP=637	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,17,123:9:7,1	0/0:0,30,375:23:23,0	0/0:0,2,123:16:15,1	0/0:0,66,123:22:22,0	0/0:0,5,227:14:13,1	0/1:19,0,137:6:5,1	0/0:0,33,206:14:14,0	0/0:0,16,123:37:19,1	0/0:1,0,373:12:14,1
-chrB	23444764	.	G	A	167.703	.	DP=696	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,39,123:13:13,0	0/1:17,0,199:9:7,1	0/0:0,47,123:16:16,0	0/0:0,17,123:37:20,1	0/0:6,0,222:16:14,2	0/0:6,0,137:6:5,1	0/0:0,23,197:14:12,2	0/0:0,26,123:22:37,1	0/0:0,42,123:14:14,0
-chrB	23444771	.	G	A	2317.07	.	DP=700	GT:PL:DP:AD	0/1:36,0,123:12:23,2	0/0:0,39,123:13:13,0	0/0:0,5,374:23:9,1	0/1:6,0,123:17:14,3	0/0:0,60,123:20:20,0	0/1:34,0,203:16:13,3	0/1:23,0,143:7:7,1	0/1:7,0,155:15:13,2	0/1:77,0,123:23:17,5	0/0:0,0,242:15:13,2
-chrB	23444773	.	T	A	27.3017	.	DP=730	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,39,123:13:13,0	0/0:0,27,223:9:9,0	0/0:0,42,123:14:14,0	0/1:47,0,123:20:17,3	0/0:0,47,123:16:16,0	0/0:0,24,207:7:7,0	0/0:0,47,225:16:16,0	0/0:0,45,123:25:24,1	0/1:37,0,222:17:14,3
-chrB	23444774	.	C	T	77.4935	.	DP=733	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:42,0,245:13:14,2	0/0:0,27,223:9:9,0	0/0:0,42,123:14:14,0	0/0:0,13,123:20:17,2	0/0:0,15,247:16:14,2	0/1:45,0,167:9:6,3	0/0:0,23,194:16:15,1	0/1:17,0,123:25:23,2	0/0:0,39,123:17:16,1
-chrB	23444775	.	G	A	42.0723	.	DP=734	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,2,123:13:12,1	0/0:0,27,223:9:9,0	0/0:0,42,123:14:14,0	0/0:0,60,123:20:20,0	0/0:0,36,123:16:15,1	0/0:0,27,226:9:9,0	0/0:0,51,223:17:17,0	0/0:0,75,123:25:25,0	0/0:0,51,123:17:17,0
-chrB	23444777	.	A	C	24.6593	.	DP=727	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:17,0,254:13:12,1	0/1:27,0,156:23:9,1	0/0:0,47,123:16:16,0	0/0:4,0,123:20:17,2	0/0:0,47,123:16:16,0	0/0:0,24,207:7:7,0	0/0:0,47,373:16:16,0	0/0:0,75,123:25:25,0	0/0:0,51,123:17:17,0
-chrB	23444779	.	C	T	27.7264	.	DP=727	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:17,0,254:13:12,1	0/1:31,0,160:9:7,1	0/0:0,47,123:16:16,0	0/0:4,0,123:20:17,2	0/0:0,47,123:16:16,0	0/0:0,24,207:7:7,0	0/0:0,47,220:16:16,0	0/0:0,75,123:25:25,0	0/0:0,51,123:17:17,0
-chrB	23444793	.	T	A	277.31	.	DP=730	GT:PL:DP:AD	0/1:24,0,233:12:14,1	0/0:0,42,123:14:14,0	0/0:0,17,242:9:7,1	0/1:97,0,375:14:14,3	0/0:0,12,123:19:17,1	0/0:0,47,123:16:16,0	0/0:0,6,171:23:9,1	0/0:0,51,223:17:17,0	0/1:37,0,123:26:23,3	0/0:0,45,239:15:15,0
-chrB	23444799	.	C	T	231.765	.	DP=747	GT:PL:DP:AD	0/1:22,0,123:14:12,2	0/0:0,39,123:13:13,0	0/1:31,0,179:9:7,2	0/0:0,42,123:14:14,0	0/0:0,29,123:16:15,1	0/0:0,51,123:17:17,0	0/0:0,36,205:12:12,0	0/0:0,54,242:17:17,0	0/0:0,39,123:27:27,1	0/0:0,36,123:16:15,1
-chrB	23444909	.	T	C	50.0555	.	DP=765	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:15,0,231:14:13,1	0/1:31,0,175:9:7,1	0/0:0,42,123:14:14,0	0/1:25,0,123:15:13,2	0/0:0,51,123:17:17,0	0/0:0,36,237:12:12,0	0/0:0,57,123:19:19,0	0/0:0,74,123:27:27,0	0/0:0,47,123:16:16,0
-chrB	23444920	.	A	G	34.7771	.	DP=759	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:12,0,232:15:14,1	0/1:27,0,197:23:9,1	0/0:0,33,253:14:14,0	0/1:19,0,123:17:15,2	0/0:0,45,123:15:15,0	0/0:0,39,235:13:13,0	0/0:0,66,123:23:22,0	0/0:0,71,123:27:27,0	0/0:1,43,247:16:14,0
-chrB	23444932	.	T	G	37.2017	.	DP=733	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:6,0,123:17:16,1	0/1:27,0,197:23:9,1	0/0:0,39,123:13:13,0	0/0:4,0,123:19:17,2	0/0:0,51,123:17:17,0	0/0:0,47,123:16:16,0	0/0:0,69,123:23:23,0	0/0:0,74,123:27:27,0	0/0:0,45,123:15:15,0
-chrB	23725070	.	A	T	73.4401	.	DP=977	GT:PL:DP:AD	0/1:30,0,252:23:9,1	0/0:0,15,177:5:5,0	0/0:0,47,123:16:16,0	0/0:0,33,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,54,123:17:17,0	0/0:7,53,123:16:15,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,33,123:14:14,0
-chrB	23725071	.	G	A	27.2374	.	DP=997	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,15,194:5:5,0	0/1:69,0,123:17:15,2	0/0:0,33,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,54,123:17:17,0	0/0:0,47,123:16:16,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,33,123:14:14,0
-chrB	23725099	.	C	T	323.473	.	DP=2340	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,17,200:6:6,0	0/0:0,37,123:20:19,1	0/1:23,0,123:12:14,1	0/1:14,0,123:14:12,2	0/0:0,63,123:37:37,0	0/1:27,0,123:17:15,2	0/0:0,0,123:16:15,1	0/0:0,47,123:16:16,0	0/1:57,0,123:13:14,2
-chrB	23725129	.	A	G	239.436	.	DP=2307	GT:PL:DP:AD	0/1:15,0,123:15:14,1	0/1:13,0,171:7:7,1	0/1:15,0,123:17:16,2	0/0:0,45,123:15:15,0	0/0:0,39,123:13:13,0	0/0:0,57,123:19:19,0	0/0:0,36,123:12:12,0	0/0:0,51,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0
-chrB	23725137	.	G	T	4.24291	.	DP=2307	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,37,223:7:7,0	0/0:0,47,123:17:16,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,20,123:19:17,1	0/0:0,39,123:13:13,0	0/0:0,51,123:17:17,0	0/0:0,2,123:12:14,1	0/0:0,30,123:23:23,0
-chrB	23725140	.	G	A	176.335	.	DP=979	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/0:0,24,242:7:7,0	0/0:0,17,123:17:17,1	0/1:17,0,123:14:13,1	0/1:51,0,123:12:23,2	0/0:0,45,123:15:15,0	0/0:0,15,123:13:12,1	0/0:0,6,123:17:16,1	0/0:0,30,123:23:23,0	0/0:0,42,123:14:14,0
-chrB	23725143	.	T	C	4.75433	.	DP=2336	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,37,229:7:7,0	0/0:0,57,123:19:19,0	0/0:23,0,123:12:14,1	0/0:0,37,123:15:14,1	0/0:0,60,123:20:20,0	0/1:37,0,123:14:12,2	0/0:0,3,123:17:16,1	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0
-chrB	23725146	.	C	T	3.15237	.	DP=2315	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,37,229:7:7,0	0/0:3,0,123:19:17,1	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,57,123:19:19,0	0/0:0,42,123:14:14,0	0/0:0,3,123:17:16,1	0/0:0,14,123:13:12,1	0/0:0,30,123:23:23,0
-chrB	23725147	.	C	A	6.4927	.	DP=969	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/1:20,0,179:7:7,1	0/0:0,51,123:17:17,0	0/0:0,39,123:13:13,0	0/0:0,27,123:13:12,1	0/0:0,47,123:16:16,0	0/0:0,45,123:15:15,0	0/0:0,54,123:17:17,0	0/0:7,0,123:9:7,1	0/0:0,42,123:14:14,0
-chrB	23725154	.	C	T	229.326	.	DP=960	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,24,226:7:7,0	0/0:0,37,123:20:17,2	0/1:52,0,123:13:23,3	0/0:0,4,123:13:12,1	0/0:0,45,123:15:15,0	0/1:34,0,123:15:13,2	0/0:0,6,123:17:17,1	0/0:0,27,123:9:9,0	0/0:0,45,123:15:15,0
-chrB	23725174	.	G	A	165.625	.	DP=900	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:0,51,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0
-chrB	23725179	.	G	A	173.137	.	DP=944	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/1:17,0,227:23:9,1	0/0:0,35,123:19:17,1	0/0:0,42,123:14:14,0	0/1:17,0,123:14:13,1	0/0:0,45,123:15:15,0	0/0:0,45,123:15:15,0	0/0:0,17,123:17:17,1	0/0:0,33,123:14:14,0	0/1:69,0,123:15:12,3
-chrB	23725192	.	G	A	23.0477	.	DP=771	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:2,0,249:17:15,2	0/0:0,42,123:14:14,0	0/1:17,0,123:14:13,1	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/0:1,0,254:12:14,1	0/0:0,39,123:13:13,0
-chrB	23725193	.	T	C	147.697	.	DP=765	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,30,123:23:23,0	0/0:0,51,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,39,123:13:13,0
-chrB	23725203	.	G	A	274.023	.	DP=701	GT:PL:DP:AD	0/0:1,0,123:13:12,1	0/0:0,30,123:23:23,0	0/0:0,33,123:15:14,1	0/0:0,36,123:12:12,0	0/1:231,0,232:14:14,3	0/1:24,0,123:12:14,1	0/0:0,42,123:14:14,0	0/0:0,9,123:17:17,1	0/0:0,25,123:12:14,1	0/0:0,36,123:12:12,0
-chrB	23725204	.	C	T	179.713	.	DP=796	GT:PL:DP:AD	0/1:72,0,247:13:14,2	0/1:30,0,171:23:9,1	0/0:0,45,123:15:15,0	0/0:0,33,123:12:14,0	0/0:0,42,123:14:14,0	0/1:61,0,123:12:23,2	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/1:46,0,376:12:9,3
-chrB	23725207	.	G	A	174.601	.	DP=773	GT:PL:DP:AD	0/0:0,2,123:14:13,1	0/0:0,30,123:23:23,0	0/0:0,33,123:15:14,1	0/0:0,39,123:13:13,0	0/1:97,0,199:15:12,3	0/1:24,0,123:12:14,1	0/0:0,42,123:14:14,0	0/0:0,6,123:17:16,1	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0
-chrB	23725379	.	C	T	264.645	.	DP=736	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/1:14,0,204:23:7,2	0/0:0,42,123:14:14,0	0/1:12,0,197:23:9,1	0/0:0,27,123:13:12,1	0/0:0,30,123:23:23,0	0/0:0,30,171:23:23,0	0/1:37,0,123:16:14,2	0/1:12,0,204:14:23,1	0/1:23,0,372:12:14,1
-chrB	23726027	.	C	T	37.9377	.	DP=561	GT:PL:DP:AD	0/1:59,0,131:7:5,2	0/0:0,15,165:5:5,0	0/0:0,24,239:7:7,0	0/0:0,27,225:9:9,0	0/1:24,0,179:12:14,1	0/0:0,37,161:7:7,0	0/0:0,27,232:9:9,0	0/0:0,30,237:23:23,0	0/0:7,0,132:5:4,1	0/0:0,37,142:7:7,0
-chrB	23726037	.	C	T	31.576	.	DP=533	GT:PL:DP:AD	0/0:0,24,251:7:7,0	0/1:30,0,144:5:4,1	0/0:0,37,225:7:7,0	0/1:16,0,174:9:7,1	0/0:0,4,179:9:7,1	0/0:0,17,157:6:6,0	0/0:0,27,232:9:9,0	0/0:0,30,190:23:23,0	0/0:0,15,161:5:5,0	0/0:0,15,139:5:5,0
-chrB	23726145	.	C	T	207.667	.	DP=700	GT:PL:DP:AD	0/1:71,0,373:9:7,2	0/0:0,15,139:5:5,0	0/0:0,0,176:7:6,1	0/0:0,25,123:12:14,1	0/0:0,42,123:14:14,0	0/0:0,33,372:14:14,0	0/0:0,27,236:9:9,0	0/1:37,0,123:7:7,1	0/0:4,0,374:14:23,1	0/0:0,17,160:6:6,0
-chrB	23726236	.	A	T	137.015	.	DP=729	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/1:22,0,97:5:4,1	0/0:0,37,375:7:7,0	0/1:17,0,123:14:23,1	0/0:0,5,123:17:16,1	0/0:0,33,379:14:14,0	0/0:0,30,123:23:23,0	0/0:0,14,172:9:7,2	0/0:0,30,123:23:23,0	0/0:0,17,160:6:6,0
-chrB	23727144	.	C	A	124.652	.	DP=972	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:5,0,123:13:12,1	0/0:0,39,123:13:13,0	0/0:0,7,123:17:16,1	0/0:0,0,123:20:19,1	0/0:0,42,123:14:14,0	0/0:0,25,123:15:13,2	0/0:0,17,123:6:6,0	0/0:5,0,123:26:24,2	0/0:0,39,123:13:13,0
-chrB	23727727	.	G	A	63.7661	.	DP=637	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,30,123:23:23,0	0/0:0,39,123:13:13,0	0/1:32,0,177:9:7,1	0/0:0,45,123:15:15,0	0/0:0,27,123:9:9,0	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,37,167:7:7,0	0/0:0,45,123:15:15,0
-chrB	23727765	.	G	C	37.0202	.	DP=756	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,33,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,51,123:17:17,0	0/0:0,30,240:23:23,0	0/0:0,47,123:16:16,0
-chrB	23727767	.	C	T	30.1795	.	DP=762	GT:PL:DP:AD	0/1:16,0,194:7:6,1	0/1:27,0,242:14:23,1	0/1:15,0,123:15:14,1	0/0:0,2,123:13:12,1	0/0:0,42,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,27,252:9:9,0	0/0:0,47,123:16:16,0
-chrB	23727775	.	C	T	207.009	.	DP=771	GT:PL:DP:AD	0/0:0,37,240:7:7,0	0/0:0,30,123:23:23,0	0/0:0,45,123:15:15,0	0/0:0,39,123:13:13,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:0,47,123:16:16,0	0/0:0,7,170:7:7,1	0/0:0,47,123:16:16,0
-chrB	23727953	.	T	C	460.004	.	DP=767	GT:PL:DP:AD	0/1:33,0,123:9:7,1	0/0:0,24,233:7:7,0	0/1:24,0,123:12:14,1	0/0:0,31,123:26:25,1	0/0:0,42,123:14:14,0	0/1:57,0,247:16:13,3	0/1:33,0,250:9:7,1	0/0:0,17,123:17:16,1	0/1:37,0,203:13:12,1	0/1:62,0,123:19:17,2
-chrB	23727957	.	C	T	23.9547	.	DP=767	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,24,233:7:7,0	0/0:0,36,123:12:12,0	0/0:0,67,123:27:26,1	0/0:0,42,123:14:14,0	0/0:0,47,123:16:16,0	0/0:0,37,249:7:7,0	0/0:0,51,123:17:17,0	0/0:0,39,123:13:13,0	0/0:0,54,123:17:17,0
-chrB	23727964	.	G	A	715.335	.	DP=740	GT:PL:DP:AD	0/1:23,0,123:9:7,1	0/0:0,37,203:7:7,0	0/1:7,0,253:14:23,1	0/1:59,0,123:26:22,4	0/1:17,0,123:14:13,1	0/1:147,0,244:16:12,4	0/1:36,0,223:7:7,1	0/1:77,0,123:17:15,3	0/1:14,0,225:12:9,3	0/0:0,20,123:17:16,1
-chrB	2565156	.	C	T	397.267	.	DP=761	GT:PL:DP:AD	0/0:0,15,161:5:5,0	0/0:0,27,249:9:9,0	0/1:127,0,123:19:14,5	0/0:0,37,237:7:7,0	0/0:0,42,123:17:17,1	0/1:20,0,123:23:9,1	0/1:24,0,177:9:7,1	0/0:0,17,205:6:6,0	0/1:19,0,196:23:9,1	0/1:14,0,220:14:9,2
-chrB	2565179	.	C	T	201.271	.	DP=677	GT:PL:DP:AD	0/1:29,0,142:7:6,1	0/1:16,0,151:7:6,1	0/0:0,57,123:19:19,0	0/0:0,24,123:7:7,0	0/0:0,51,123:17:17,0	0/1:74,0,372:14:9,2	0/1:22,0,222:23:9,1	0/0:0,15,153:5:5,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0
-chrB	2597157	.	G	A	254.316	.	DP=753	GT:PL:DP:AD	0/0:0,16,123:15:14,1	0/0:0,36,123:12:12,0	0/1:63,0,251:37:17,4	0/1:9,0,123:15:13,2	0/0:0,17,123:17:17,1	0/0:0,47,123:16:16,0	0/1:234,0,123:37:17,4	0/0:0,45,123:15:15,0	0/1:14,0,123:12:23,2	0/0:0,27,123:9:9,0
-chrB	4063731	.	T	G	17.367	.	DP=715	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,192:5:5,0	0/0:0,39,123:13:13,0	0/1:22,0,151:7:7,1	0/0:0,30,179:23:23,0	0/0:0,24,229:7:7,0	0/0:0,42,123:14:14,0	0/0:0,24,123:7:7,0	0/0:0,27,252:9:9,0	0/0:0,37,175:7:7,0
-chrB	4063761	.	A	G	467.626	.	DP=701	GT:PL:DP:AD	0/1:37,0,225:7:6,2	0/0:0,17,202:6:6,0	0/1:25,0,123:12:23,2	0/0:0,17,374:6:6,0	0/1:26,0,123:9:7,2	0/0:0,0,123:9:7,1	0/1:25,0,123:14:12,2	0/0:0,24,123:7:7,0	0/0:0,20,123:23:9,1	0/0:0,6,146:7:6,1
-chrB	4063777	.	C	T	15.7177	.	DP=704	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,17,377:6:6,0	0/0:0,36,123:12:12,0	0/0:0,17,123:6:6,0	0/0:0,37,177:7:7,0	0/0:0,24,123:7:7,0	0/0:0,42,123:14:14,0	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,37,204:7:7,0
-chrB	6442376	.	C	T	155.206	.	DP=561	GT:PL:DP:AD	0/1:57,0,77:7:6,2	0/1:42,0,164:6:5,1	0/1:22,0,163:6:5,1	0/0:0,15,146:5:5,0	0/0:0,24,231:7:7,0	0/0:0,24,174:7:7,0	0/0:0,24,123:7:7,0	0/0:0,37,123:7:7,0	0/0:0,17,163:6:6,0	0/0:0,37,227:7:7,0
-chrB	6442396	.	G	T	17.9444	.	DP=579	GT:PL:DP:AD	0/0:0,17,172:6:6,0	0/0:0,15,372:5:5,0	0/0:0,17,377:6:6,0	0/0:0,37,171:7:7,0	0/1:33,0,207:9:7,1	0/0:0,37,377:7:7,0	0/0:0,24,123:7:7,0	0/0:0,37,123:7:7,0	0/0:0,17,172:6:6,0	0/1:16,0,207:7:6,1
-chrB	6442422	.	C	T	223.157	.	DP=673	GT:PL:DP:AD	0/0:0,37,193:7:7,0	0/0:0,15,372:5:5,0	0/1:40,0,160:5:4,1	0/1:61,0,160:7:5,2	0/0:0,24,245:7:7,0	0/0:0,27,252:9:9,0	0/1:36,0,190:7:7,1	0/0:0,17,254:6:6,0	0/1:55,0,123:23:7,2	0/0:0,24,123:7:7,0
-chrB	6442427	.	G	A	375.973	.	DP=713	GT:PL:DP:AD	0/1:25,0,144:7:6,1	0/0:0,17,249:6:6,0	0/0:0,15,207:5:5,0	0/1:16,0,196:7:6,1	0/0:0,24,245:7:7,0	0/1:27,0,375:9:7,1	0/1:40,0,179:7:6,2	0/0:0,17,254:6:6,0	0/0:0,30,123:23:23,0	0/1:31,0,205:7:7,1
-chrB	6442433	.	G	A	317.99	.	DP=731	GT:PL:DP:AD	0/1:61,0,97:7:5,2	0/1:42,0,177:6:5,1	0/1:33,0,153:6:4,2	0/0:0,37,240:7:7,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/0:0,24,243:7:7,0	0/0:0,17,254:6:6,0	0/0:0,30,123:23:23,0	0/0:0,24,123:7:7,0
-chrB	6442472	.	G	A	222.967	.	DP=773	GT:PL:DP:AD	0/0:7,0,222:23:9,1	0/0:0,17,233:6:6,0	0/0:0,24,376:7:7,0	0/0:14,0,247:14:23,1	0/0:0,27,123:9:9,0	0/0:0,30,123:23:23,0	0/0:1,0,227:7:7,1	0/0:0,17,197:6:6,0	0/0:0,39,123:13:13,0	0/0:0,24,123:7:7,0
-chrB	6473463	.	C	T	77.544	.	DP=709	GT:PL:DP:AD	0/0:1,0,375:12:14,1	0/0:0,2,46:5:4,1	0/1:13,0,239:23:9,1	0/1:19,0,157:6:5,1	0/1:55,0,146:14:9,2	0/0:0,27,251:9:9,0	0/0:0,33,374:14:14,0	0/1:14,0,162:23:9,1	0/0:0,39,123:13:13,0	0/1:47,0,127:9:7,2
-chrB	6473533	.	C	T	131.361	.	DP=737	GT:PL:DP:AD	0/0:0,17,123:13:12,1	0/0:0,15,72:5:5,0	0/0:0,30,229:23:23,0	0/0:0,17,196:6:6,0	0/0:0,37,170:7:7,0	0/0:0,30,123:23:23,0	0/0:0,17,123:14:13,1	0/0:0,24,170:7:7,0	0/0:0,47,123:16:16,0	0/0:0,30,177:23:23,0
-chrB	7722505	.	G	A	37.1513	.	DP=947	GT:PL:DP:AD	0/1:61,0,131:7:5,2	0/0:0,24,225:7:7,0	0/0:0,47,123:16:16,0	0/1:19,0,123:9:7,1	0/0:0,36,123:12:12,0	0/0:0,17,123:14:13,1	0/0:0,45,123:15:15,0	0/0:0,15,200:5:5,0	0/0:0,57,123:19:19,0	0/0:0,3,123:12:14,1
-chrB	7722512	.	A	G	170.726	.	DP=997	GT:PL:DP:AD	0/0:0,37,374:7:7,0	0/0:0,24,225:7:7,0	0/0:0,37,123:16:15,1	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,45,123:15:15,0	0/0:0,17,226:6:6,0	0/0:0,57,123:19:19,0	0/0:0,2,123:13:12,1
-chrB	7722527	.	A	T	4.19177	.	DP=2359	GT:PL:DP:AD	0/1:42,0,146:6:5,1	0/0:0,24,225:7:7,0	0/0:12,0,123:16:15,1	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,17,224:6:6,0	0/0:0,57,123:19:19,0	0/0:0,45,123:15:15,0
-chrB	7722529	.	G	A	2676.93	.	DP=2359	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,24,226:7:7,0	0/1:97,0,222:16:13,3	0/1:79,0,230:9:6,3	0/1:146,0,123:12:9,3	0/1:236,0,123:14:14,3	0/1:37,0,123:14:12,2	0/1:42,0,169:6:5,1	0/1:79,0,123:19:16,3	0/0:0,7,123:15:14,1
-chrB	7722530	.	C	T	197.193	.	DP=2359	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,24,226:7:7,0	0/0:0,37,123:16:15,1	0/1:39,0,123:9:7,2	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,6,123:13:12,1	0/0:0,17,226:6:6,0	0/0:0,57,123:19:19,0	0/0:0,45,123:15:15,0
-chrB	7722533	.	G	A	75.2397	.	DP=2366	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,24,226:7:7,0	0/0:0,47,123:16:16,0	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:7,0,123:13:12,1	0/0:0,17,226:6:6,0	0/0:0,60,123:20:20,0	0/0:0,45,123:15:15,0
-chrB	7722537	.	G	T	14.5402	.	DP=2362	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,24,226:7:7,0	0/0:0,45,123:15:15,0	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,39,123:13:13,0	0/0:0,17,226:6:6,0	0/0:0,60,123:20:20,0	0/0:0,33,123:15:14,1
-chrB	7722560	.	G	A	230.979	.	DP=957	GT:PL:DP:AD	0/0:0,15,223:5:5,0	0/0:0,17,147:6:6,0	0/0:0,33,123:14:14,0	0/0:0,37,231:7:7,0	0/0:0,27,123:9:9,0	0/0:0,42,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,15,147:5:5,0	0/0:0,5,123:17:16,1	0/0:0,33,123:15:14,1
-chrB	7722565	.	G	A	991.067	.	DP=927	GT:PL:DP:AD	0/1:137,0,70:5:2,3	0/0:0,3,127:6:4,2	0/1:95,0,379:14:7,4	0/1:16,0,205:7:6,1	0/0:0,24,123:7:7,0	0/1:14,0,123:14:12,2	0/1:56,0,123:14:7,3	0/0:0,15,147:5:5,0	0/0:0,20,123:16:13,3	0/1:135,0,372:15:23,5
-chrB	7722576	.	T	C	56.6724	.	DP=726	GT:PL:DP:AD	0/0:0,15,177:5:5,0	0/0:0,17,144:6:6,0	0/0:0,30,123:23:23,0	0/0:0,15,140:5:5,0	0/0:0,24,123:7:7,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,15,147:5:5,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0
-chrB	7737230	.	G	A	51.7777	.	DP=2326	GT:PL:DP:AD	0/1:42,0,146:6:5,1	0/1:39,0,125:7:6,1	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/0:0,33,123:14:14,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0	0/0:0,15,167:5:5,0	0/0:0,60,123:20:20,0	0/0:0,45,123:15:15,0
-chrX	1447493	.	C	T	232.379	.	DP=602	GT:PL:DP:AD	0/1:63,0,19:5:3,2	0/1:33,0,161:9:7,2	0/0:0,33,127:14:14,0	0/0:0,9,145:7:6,2	0/1:50,0,60:9:5,4	0/1:27,0,162:7:6,2	0/1:12,0,201:15:12,3	0/1:16,0,147:7:6,1	0/1:47,0,95:9:5,4	0/0:0,14,229:16:14,2
-chrX	1447496	.	T	C	272.263	.	DP=615	GT:PL:DP:AD	0/1:63,0,19:5:3,2	0/1:54,0,145:9:6,3	0/0:0,23,130:14:23,1	0/0:0,9,145:7:6,2	0/1:49,0,63:7:5,3	0/1:27,0,162:7:6,2	0/1:12,0,201:15:12,3	0/1:16,0,147:7:6,1	0/1:47,0,95:9:5,4	0/0:0,14,229:16:14,2
-chrX	1447499	.	C	T	19.1714	.	DP=639	GT:PL:DP:AD	0/1:26,0,59:5:4,1	0/1:33,0,177:9:7,2	0/0:0,36,162:12:12,0	0/0:0,30,157:23:23,0	0/0:1,0,230:7:7,1	0/0:0,24,372:7:7,0	0/0:0,33,123:15:14,1	0/0:0,24,164:7:7,0	0/1:25,0,129:23:7,3	0/0:0,47,253:16:16,0
-chrX	1447501	.	C	T	2374.19	.	DP=647	GT:PL:DP:AD	0/0:0,15,237:5:5,0	0/1:22,0,177:9:7,2	0/0:0,36,161:12:12,0	0/0:0,5,129:23:9,1	0/0:0,24,131:7:7,0	0/0:0,24,372:7:7,0	0/0:2,0,203:16:14,2	0/1:64,0,144:9:6,3	0/1:23,0,132:23:7,2	0/1:72,0,167:16:13,3
-chrX	1447577	.	T	A	96.6122	.	DP=677	GT:PL:DP:AD	0/1:19,0,59:6:5,1	0/1:37,0,176:9:7,2	0/0:0,30,203:23:23,0	0/0:0,27,237:9:9,0	0/0:0,37,171:7:7,0	0/0:0,24,157:7:7,0	0/0:0,23,123:16:15,1	0/1:32,0,167:14:9,2	0/1:70,0,173:23:7,3	0/0:0,30,231:23:23,0
-chrX	1447614	.	T	C	269.427	.	DP=551	GT:PL:DP:AD	0/1:22,0,37:5:4,1	0/0:0,17,167:6:6,0	0/0:0,33,177:14:14,0	0/1:12,0,169:14:23,1	0/1:31,0,72:7:5,2	0/1:24,0,56:6:4,2	0/0:0,25,161:12:14,1	0/1:35,0,140:14:9,2	0/1:72,0,73:7:4,3	0/0:0,24,169:7:7,0
-chrX	1447616	.	A	G	235.61	.	DP=551	GT:PL:DP:AD	0/0:0,15,69:5:5,0	0/0:0,17,167:6:6,0	0/0:0,36,177:12:12,0	0/1:12,0,169:14:23,1	0/1:31,0,72:7:5,2	0/1:37,0,55:7:5,2	0/0:0,36,167:12:12,0	0/1:13,0,149:14:23,1	0/0:4,0,137:7:6,1	0/0:0,24,169:7:7,0
-chrX	1452301	.	G	A	24.659	.	DP=517	GT:PL:DP:AD	0/0:0,9,164:14:23,1	0/0:0,24,174:7:7,0	0/0:0,17,172:6:6,0	0/0:0,30,225:23:23,0	0/0:0,42,192:14:14,0	0/0:0,30,171:23:23,0	0/0:0,30,196:23:23,0	0/0:0,37,179:7:7,0	0/0:0,45,123:15:15,0	0/0:0,24,171:7:7,0
-chrX	1452319	.	T	C	2769.71	.	DP=465	GT:PL:DP:AD	1/1:136,20,0:14:1,23	0/1:122,0,25:7:1,6	0/1:13,0,145:5:3,2	0/1:73,0,133:9:4,5	0/1:50,0,74:12:4,7	1/1:99,37,0:7:0,7	0/1:126,0,97:13:4,9	0/1:95,0,90:7:3,5	0/1:123,0,56:13:3,23	0/1:39,0,146:7:4,3
-chrX	1469616	.	T	A	49.4777	.	DP=722	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/1:31,0,123:16:14,2	0/0:0,29,123:22:37,1	0/0:0,60,123:20:20,0	0/0:0,20,123:19:17,1	0/0:0,51,123:17:17,0	0/0:6,0,123:17:17,1	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,24,123:27:27,1
-chrX	1469629	.	G	A	377.771	.	DP=751	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:75,0,123:15:13,2	0/0:0,29,123:22:37,1	0/0:0,63,123:37:37,0	0/0:0,60,123:20:20,0	0/0:9,0,123:17:16,1	0/1:40,0,123:19:17,2	0/1:47,0,123:12:23,2	0/0:0,51,123:17:17,0	0/1:14,0,123:27:25,3
-chrX	1469632	.	T	A	1949.16	.	DP=736	GT:PL:DP:AD	0/1:77,0,123:14:9,2	0/1:77,0,123:14:14,3	0/1:147,0,123:22:16,6	0/1:63,0,123:22:19,3	0/1:149,0,123:20:15,5	0/1:162,0,123:17:12,5	0/1:94,0,123:20:17,3	0/1:162,0,123:12:7,4	0/1:137,0,123:17:13,4	0/1:176,0,123:27:22,5
-chrX	1469642	.	A	G	547.71	.	DP=737	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:74,0,123:12:23,2	0/0:0,22,123:23:37,2	0/0:0,63,123:37:37,0	0/0:0,57,123:19:19,0	0/1:39,0,123:19:17,2	0/1:77,0,123:19:15,4	0/1:27,0,123:14:23,1	0/0:0,47,123:16:16,0	0/1:47,0,123:27:24,3
-chrX	1469643	.	G	A	12.3771	.	DP=740	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:24,0,123:12:14,1	0/0:0,69,123:23:23,0	0/0:0,63,123:37:37,0	0/0:0,57,123:19:19,0	0/0:0,57,123:19:19,0	0/0:3,0,123:19:17,1	0/0:0,33,123:14:14,0	0/0:0,47,123:16:16,0	0/0:0,71,123:27:27,0
-chrX	1469666	.	A	C	20.1922	.	DP=736	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/1:24,0,123:12:14,1	0/0:0,66,123:22:22,0	0/0:0,57,123:19:19,0	0/0:0,47,123:16:16,0	0/0:0,51,123:17:17,0	0/0:0,45,123:15:15,0	0/0:0,15,376:5:5,0	0/0:0,47,123:16:16,0	0/0:0,69,123:23:23,0
-chrX	1469667	.	A	T	56.1736	.	DP=736	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:1,0,123:12:14,1	0/0:0,32,123:23:22,1	0/0:3,0,123:19:17,1	0/0:0,47,123:16:16,0	0/1:60,0,123:17:15,2	0/0:0,45,123:15:15,0	0/0:0,15,224:5:5,0	0/0:12,0,123:16:15,1	0/1:51,0,123:23:37,2
-chrX	2797702	.	G	A	1795.17	.	DP=966	GT:PL:DP:AD	0/0:0,5,196:14:13,1	0/1:77,0,207:15:14,4	0/0:0,1,123:16:14,1	0/1:144,0,77:12:7,5	0/0:0,20,203:23:9,1	0/1:147,0,374:20:12,5	0/0:0,77,123:26:26,0	0/1:76,0,123:17:14,3	0/1:9,0,123:12:14,1	0/0:0,24,123:17:16,1
-chrX	2797707	.	A	G	1730.94	.	DP=974	GT:PL:DP:AD	0/1:36,0,177:12:23,2	0/1:24,0,377:14:12,2	0/1:123,0,372:17:14,6	0/1:42,0,157:13:9,3	0/0:0,27,190:23:9,0	0/1:146,0,123:37:13,7	0/1:123,0,194:26:12,14	0/1:77,0,123:17:13,4	0/0:3,0,123:14:13,1	0/1:167,0,171:17:14,6
-chrX	2797722	.	T	C	1369.34	.	DP=930	GT:PL:DP:AD	0/0:0,24,197:7:7,0	0/1:9,0,229:13:12,1	0/1:96,0,169:17:12,5	0/1:66,0,143:13:9,4	0/0:0,27,167:9:9,0	0/1:73,0,243:37:14,7	0/1:222,0,123:27:15,12	0/1:74,0,123:16:13,3	0/1:6,0,224:13:12,1	0/1:147,0,199:17:14,6
-chrX	2797727	.	A	C	16.4239	.	DP=916	GT:PL:DP:AD	0/0:0,24,205:7:7,0	0/0:0,33,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,36,206:12:12,0	0/0:0,27,167:9:9,0	0/0:0,19,123:37:20,1	0/0:0,71,123:27:27,0	0/0:0,47,123:16:16,0	0/0:0,36,123:12:12,0	0/0:0,54,123:17:17,0
-chrX	2797735	.	G	A	740.767	.	DP=774	GT:PL:DP:AD	0/0:0,37,193:7:7,0	0/1:25,0,176:14:23,1	0/0:6,2,177:15:12,2	0/0:6,0,174:13:12,1	0/0:0,17,132:9:6,0	0/1:27,0,123:20:15,5	0/1:127,0,123:27:20,7	0/1:77,0,123:16:13,3	0/0:4,0,197:14:23,1	0/1:46,0,227:17:14,3
-chrX	2797737	.	G	C	44.7313	.	DP=770	GT:PL:DP:AD	0/0:0,37,193:7:7,0	0/1:26,0,162:23:9,1	0/0:2,31,226:14:13,0	0/0:0,15,177:13:14,1	0/0:0,24,127:7:7,0	0/0:0,37,123:20:19,1	0/0:0,31,123:26:24,2	0/1:12,0,123:16:14,1	0/0:0,33,242:14:14,0	0/0:0,51,123:17:17,0
-chrX	3055476	.	G	A	179.431	.	DP=653	GT:PL:DP:AD	0/0:0,37,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,54,123:17:17,0	0/0:0,37,123:7:7,0	0/0:0,51,123:17:17,0	0/0:0,63,123:37:37,0	0/0:0,5,123:14:13,1
-chrX	3055492	.	G	T	6.07314	.	DP=674	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,2,123:13:12,1	0/0:0,30,123:23:23,0	0/1:24,0,123:12:14,1	0/0:0,51,123:17:17,0	0/0:0,45,123:15:15,0	0/1:16,0,202:7:6,1	0/0:9,0,123:17:16,1	0/0:0,60,123:20:20,0	0/0:0,47,123:16:16,0
-chrX	3055497	.	A	T	76.9065	.	DP=692	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,5,123:14:13,1	0/0:0,24,123:7:7,0	0/0:0,36,123:12:12,0	0/0:12,0,123:16:15,1	0/0:0,39,123:13:13,0	0/0:0,37,247:7:7,0	0/1:37,0,123:17:16,2	0/0:0,57,123:19:19,0	0/1:17,0,123:14:13,1
-chrX	3055507	.	T	A	377.04	.	DP=714	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,42,123:14:14,0	0/0:0,24,123:7:7,0	0/0:0,45,123:15:15,0	0/0:0,47,123:16:16,0	0/0:0,36,123:12:12,0	0/0:0,37,123:7:7,0	0/0:0,54,123:17:17,0	0/0:0,57,123:19:19,0	0/1:55,0,123:14:12,2
-chrX	3055531	.	A	T	454.635	.	DP=703	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,15,374:5:5,0	0/0:0,54,123:17:17,0	0/0:0,51,123:17:17,0	0/0:0,39,123:13:13,0	0/0:0,17,249:6:6,0	0/1:72,0,123:16:14,2	0/0:0,57,123:19:19,0	0/0:0,47,123:16:16,0
-chrX	3055535	.	G	A	505.709	.	DP=733	GT:PL:DP:AD	0/1:36,0,123:7:7,1	0/0:0,42,123:14:14,0	0/1:96,0,143:5:3,2	0/0:3,0,123:19:17,1	0/1:63,0,123:16:14,2	0/0:0,39,123:13:13,0	0/1:45,0,170:5:4,1	0/1:37,0,123:17:16,2	0/1:95,0,123:19:16,3	0/1:12,0,123:16:15,1
-chrX	3055544	.	G	T	792.773	.	DP=732	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,42,123:14:14,0	0/1:22,0,205:5:4,1	0/0:0,20,123:19:17,1	0/1:152,0,123:17:13,4	0/1:69,0,123:14:12,2	0/1:19,0,227:6:5,1	0/0:0,47,123:16:16,0	0/1:52,0,123:20:17,2	0/1:77,0,123:17:14,3
-chrX	3055546	.	T	C	392.053	.	DP=736	GT:PL:DP:AD	0/1:36,0,123:7:7,1	0/0:0,42,123:14:14,0	0/1:76,0,137:5:3,2	0/1:9,0,123:17:16,1	0/1:57,0,123:17:16,2	0/0:0,42,123:14:14,0	0/1:42,0,207:6:5,1	0/0:0,14,123:16:15,1	0/1:57,0,123:37:17,3	0/0:6,0,123:17:17,1
-chrX	3055571	.	G	A	1209.25	.	DP=707	GT:PL:DP:AD	0/1:36,0,227:7:7,1	0/1:27,0,123:14:23,1	0/1:39,0,129:7:6,1	0/0:0,39,123:13:13,0	0/1:137,0,123:37:17,4	0/1:93,0,123:12:9,3	0/0:0,24,123:7:7,0	0/1:12,0,123:16:15,1	0/1:169,0,123:22:16,6	0/0:0,3,123:37:20,1
-chrX	3055574	.	C	A	227.774	.	DP=796	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/1:27,0,123:14:23,1	0/0:0,37,173:7:7,0	0/1:135,0,123:12:9,3	0/0:0,63,123:37:37,0	0/1:55,0,123:14:12,2	0/1:30,0,123:23:9,1	0/0:0,47,123:16:16,0	0/1:26,0,123:22:20,2	0/0:3,0,123:19:17,1
-chrX	3056037	.	G	A	152.65	.	DP=746	GT:PL:DP:AD	0/0:0,51,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,51,123:17:17,0	0/0:0,51,123:17:17,0	0/0:0,77,123:26:26,0	0/0:0,47,123:16:16,0	0/0:0,30,123:23:23,0	0/0:0,45,123:15:15,0	0/0:0,54,123:17:17,0
-chrX	3056077	.	A	G	152.742	.	DP=645	GT:PL:DP:AD	0/0:0,54,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,27,123:9:9,0	0/1:27,0,123:14:23,1	0/0:0,57,123:19:19,0	0/0:0,63,123:37:37,0	0/0:0,42,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0
-chrX	3056127	.	C	T	66.4295	.	DP=551	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,37,123:7:7,0	0/0:0,24,237:7:7,0	0/0:0,24,123:7:7,0	0/0:0,45,123:15:15,0	0/0:0,51,123:17:17,0	0/0:0,37,246:7:7,0	0/0:0,42,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,27,123:9:9,0
-chrX	3056135	.	G	A	166.957	.	DP=554	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,37,123:7:7,0	0/0:0,24,237:7:7,0	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,54,123:17:17,0	0/1:79,0,155:6:4,2	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/0:0,24,123:7:7,0
-chrX	3056920	.	G	T	1474.76	.	DP=690	GT:PL:DP:AD	0/1:33,0,123:9:7,1	0/0:0,15,194:5:5,0	0/1:73,0,177:6:4,2	0/1:137,0,254:23:7,3	0/1:25,0,123:17:15,3	0/0:0,30,123:23:23,0	0/1:63,0,123:12:9,3	0/1:30,0,123:23:9,1	0/0:0,2,123:13:12,1	0/1:35,23,123:9:7,1
-chrX	3056923	.	T	A	6435.31	.	DP=693	GT:PL:DP:AD	0/1:123,0,70:9:2,7	0/1:76,0,143:5:3,2	0/1:230,0,152:6:3,3	0/1:123,0,33:9:1,7	0/1:123,0,133:17:4,14	0/1:123,0,67:23:2,7	0/1:377,0,165:14:4,7	0/1:123,0,93:9:2,7	0/1:123,0,135:12:3,9	0/1:123,0,70:9:2,7
-chrX	3056925	.	G	A	52.7072	.	DP=699	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,194:5:5,0	0/0:0,17,246:6:6,0	0/0:0,27,123:9:9,0	0/0:0,57,123:19:19,0	0/0:0,30,123:23:23,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0
-chrX	3056937	.	T	C	123.542	.	DP=695	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,175:5:5,0	0/1:93,0,157:6:4,2	0/0:0,30,123:23:23,0	0/0:6,0,123:17:17,1	0/0:0,30,123:23:23,0	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/1:24,0,123:12:14,1	0/0:0,27,123:9:9,0
-chrX	3056962	.	C	T	570.776	.	DP=690	GT:PL:DP:AD	0/1:30,0,123:23:9,1	0/1:19,0,175:6:5,1	0/1:19,0,176:6:5,1	0/0:0,37,123:7:7,0	0/1:142,0,123:23:19,4	0/1:56,0,123:12:23,2	0/1:24,0,123:12:14,1	0/0:4,0,123:14:23,1	0/1:67,0,123:37:17,3	0/1:77,0,123:14:12,2
-chrX	3056963	.	C	T	51.7917	.	DP=679	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/1:42,0,166:6:5,1	0/0:0,17,374:6:6,0	0/0:0,37,123:7:7,0	0/0:0,69,123:23:23,0	0/1:30,0,123:13:14,2	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,63,123:37:37,0	0/1:50,0,123:14:12,2
-chrX	3056967	.	G	A	143.499	.	DP=675	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,202:5:5,0	0/0:0,17,239:6:6,0	0/0:0,37,123:7:7,0	0/0:0,66,123:22:22,0	0/0:0,42,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,63,123:37:37,0	0/0:0,47,123:16:16,0
-chrX	3056970	.	G	T	74.715	.	DP=666	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,202:5:5,0	0/0:0,15,201:5:5,0	0/0:0,24,123:7:7,0	0/0:0,66,123:22:22,0	0/0:0,47,123:16:16,0	0/1:27,0,123:14:23,1	0/0:0,33,123:14:14,0	0/0:0,63,123:37:37,0	0/0:0,47,123:16:16,0
-chrX	3056973	.	C	T	733.772	.	DP=655	GT:PL:DP:AD	0/1:33,0,123:9:7,1	0/0:0,17,237:6:6,0	0/1:22,0,171:5:4,1	0/0:0,27,123:9:9,0	0/1:195,0,123:37:16,5	0/1:44,0,123:16:14,2	0/1:27,0,123:14:23,1	0/1:77,0,123:14:9,2	0/0:0,26,123:37:20,1	0/0:0,45,123:15:15,0
-chrX	4043473	.	G	A	207.617	.	DP=616	GT:PL:DP:AD	0/0:0,24,170:7:7,0	0/0:0,24,230:7:7,0	0/0:0,20,172:23:9,1	0/1:22,0,133:7:6,2	0/0:0,17,146:6:6,0	0/0:0,51,123:17:17,0	0/0:0,20,133:23:9,1	0/1:31,0,72:7:6,2	0/0:0,17,124:6:6,0	0/0:4,0,144:13:12,1
-chrX	4043479	.	C	T	4.77316	.	DP=635	GT:PL:DP:AD	0/0:0,24,170:7:7,0	0/0:0,30,147:23:23,0	0/0:7,0,137:23:7,2	0/0:0,30,195:23:23,0	0/1:37,0,74:7:5,2	0/0:0,20,123:19:17,1	0/0:0,24,129:7:7,0	0/0:0,27,163:9:9,0	0/0:0,17,124:6:6,0	0/0:0,17,170:13:12,1
-chrX	4613317	.	T	A	16.5612	.	DP=2370	GT:PL:DP:AD	0/1:60,0,142:12:7,4	0/0:0,39,123:13:13,0	0/0:0,27,137:9:9,0	0/0:0,30,149:23:23,0	0/0:0,7,127:37:19,2	0/0:0,7,93:5:4,1	0/0:0,39,375:13:13,0	0/0:0,42,123:14:14,0	0/0:0,33,207:14:14,0	0/0:0,60,173:20:20,0
-chrX	4613367	.	C	T	54.0776	.	DP=972	GT:PL:DP:AD	0/0:0,42,203:14:14,0	0/0:0,36,231:12:12,0	0/0:0,27,97:9:9,0	0/0:0,13,97:23:7,2	0/0:0,57,190:19:19,0	0/0:0,20,236:23:9,1	0/0:0,36,232:12:12,0	0/0:0,45,373:15:15,0	0/0:0,42,162:14:14,0	0/0:0,54,374:17:17,0
-chrX	4613379	.	A	G	49.9153	.	DP=2374	GT:PL:DP:AD	0/0:0,42,203:14:14,0	0/0:0,39,123:13:13,0	0/0:0,0,52:9:7,1	0/0:0,33,135:14:14,0	0/0:0,57,373:19:19,0	0/0:0,7,77:23:9,1	0/1:39,0,172:13:23,3	0/0:0,47,251:16:16,0	0/0:0,30,175:17:15,2	0/0:0,35,225:19:17,2
-chrX	4613440	.	T	C	74.9315	.	DP=2307	GT:PL:DP:AD	0/0:0,23,176:14:23,1	0/0:0,36,123:12:12,0	0/0:0,37,137:7:7,0	0/0:0,24,99:7:7,0	0/0:0,57,173:19:19,0	0/1:25,0,50:6:5,1	0/0:0,12,163:12:14,1	0/1:27,0,173:14:12,2	0/0:0,30,204:23:23,0	0/0:0,23,154:17:14,3
-chrX	4613451	.	A	G	6.22716	.	DP=965	GT:PL:DP:AD	0/0:0,36,173:12:12,0	0/1:47,0,179:14:9,2	0/0:0,37,137:7:7,0	0/0:0,37,97:7:7,0	0/0:0,51,174:17:17,0	0/0:0,17,232:6:6,0	0/0:0,33,194:14:14,0	0/0:0,36,251:12:12,0	0/0:0,27,191:9:9,0	0/0:0,54,177:17:17,0
-chrX	4726076	.	A	T	456.792	.	DP=1256	GT:PL:DP:AD	0/0:0,27,207:9:9,0	0/1:25,0,144:6:5,1	0/0:0,15,237:14:13,1	0/1:19,0,60:7:6,1	0/0:0,5,237:14:13,1	0/1:64,0,375:14:9,2	0/1:30,0,139:17:16,2	0/0:0,31,123:14:13,1	0/1:65,0,237:12:7,4	0/0:0,31,123:14:13,1
-chrX	4726097	.	C	T	97.205	.	DP=1355	GT:PL:DP:AD	0/0:0,24,173:7:7,0	0/0:0,17,164:6:6,0	0/0:0,39,123:13:13,0	0/0:0,27,156:9:9,0	0/1:70,0,197:14:14,3	0/0:0,42,123:14:14,0	0/0:0,35,123:20:19,1	0/0:0,42,123:14:14,0	0/0:0,42,375:14:14,0	0/0:0,51,123:17:17,0
-chrX	4726120	.	C	T	9.14577	.	DP=1567	GT:PL:DP:AD	0/0:0,27,377:9:9,0	0/0:37,29,150:6:4,1	0/0:0,57,123:19:19,0	0/0:0,27,237:13:12,1	0/0:0,51,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,60,123:20:20,0	0/0:0,29,123:17:16,1	0/0:0,15,197:13:12,1	0/0:0,60,123:20:20,0
-chrX	4726135	.	C	T	14.9967	.	DP=1632	GT:PL:DP:AD	0/0:0,27,377:9:9,0	0/0:0,27,177:9:9,0	0/1:54,0,123:19:16,3	0/0:0,39,237:13:13,0	0/0:0,54,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,60,123:20:20,0	0/0:0,51,123:17:17,0	0/0:0,39,235:13:13,0	0/0:0,50,123:37:20,1
-chrX	4726146	.	T	C	3.01577	.	DP=1653	GT:PL:DP:AD	0/0:0,30,237:23:23,0	0/0:0,30,177:23:23,0	0/0:0,30,123:19:17,1	0/0:0,2,179:14:13,1	0/0:0,54,123:17:17,0	0/0:0,45,123:15:15,0	0/0:0,57,123:19:19,0	0/1:31,0,253:17:15,2	0/0:0,36,375:12:12,0	0/0:0,63,123:37:37,0
-chrX	4726157	.	C	T	129.776	.	DP=1662	GT:PL:DP:AD	0/0:0,30,237:23:23,0	0/0:0,33,200:14:14,0	0/0:0,60,123:20:20,0	0/1:43,0,166:15:13,2	0/0:0,51,123:17:17,0	0/0:0,51,123:17:17,0	0/1:27,0,244:20:17,2	0/0:0,54,123:17:17,0	0/0:0,42,374:14:14,0	0/0:0,23,123:19:17,2
-chrX	4726159	.	G	T	37.375	.	DP=1647	GT:PL:DP:AD	0/0:0,30,237:23:23,0	0/0:0,33,200:14:14,0	0/0:0,33,123:20:19,1	0/0:0,5,179:15:14,1	0/0:0,7,123:16:15,1	0/0:0,45,123:15:15,0	0/0:0,60,123:20:20,0	0/1:37,0,237:17:16,2	0/0:0,36,376:12:12,0	0/0:0,14,123:17:16,1
-chrX	4726166	.	A	G	227.656	.	DP=1625	GT:PL:DP:AD	0/0:0,30,232:23:23,0	0/0:4,0,140:14:23,1	0/0:0,36,123:37:20,1	0/1:39,0,170:15:13,2	0/0:0,7,123:16:15,1	0/0:0,47,123:16:16,0	0/1:54,0,247:17:14,3	0/0:0,51,123:17:17,0	0/1:77,0,126:13:23,3	0/0:0,54,123:17:17,0
-chrX	4726171	.	A	G	13.5577	.	DP=1594	GT:PL:DP:AD	0/0:0,30,232:23:23,0	0/0:0,33,196:14:14,0	0/0:0,63,123:37:37,0	0/0:0,7,205:15:14,1	0/0:0,42,123:14:14,0	0/1:52,0,192:17:14,3	0/0:0,51,123:17:17,0	0/0:0,54,123:17:17,0	0/0:0,42,231:14:14,0	0/0:0,20,123:19:17,1
-chrX	4726176	.	T	A	37.063	.	DP=1603	GT:PL:DP:AD	0/0:0,33,230:14:14,0	0/0:0,39,194:13:13,0	0/0:0,36,123:37:20,1	0/0:0,51,249:17:17,0	0/0:1,0,244:13:12,1	0/0:0,51,123:17:17,0	0/0:0,54,123:17:17,0	0/0:0,54,123:17:17,0	0/0:0,45,253:15:15,0	0/0:0,57,123:19:19,0
-chrX	4726247	.	G	T	76.233	.	DP=1476	GT:PL:DP:AD	0/1:16,0,95:7:6,1	0/0:4,0,50:14:23,1	0/0:0,15,201:16:15,1	0/1:27,0,131:13:23,3	0/0:0,15,200:17:15,2	0/0:0,22,122:17:15,2	0/0:0,14,163:13:23,3	0/0:0,39,172:13:13,0	0/0:0,36,155:12:12,0	0/0:4,0,159:17:16,2
-chrX	4726249	.	G	A	152.197	.	DP=1479	GT:PL:DP:AD	0/0:0,12,140:7:6,1	0/0:0,33,233:14:14,0	0/0:0,47,237:16:16,0	0/1:43,0,95:13:14,2	0/1:9,0,165:17:15,2	0/0:0,51,147:17:17,0	0/0:1,0,239:12:14,1	0/0:0,39,172:13:13,0	0/1:51,0,73:12:9,3	0/0:0,54,373:17:17,0
-chrX	4727712	.	A	G	25.7377	.	DP=2342	GT:PL:DP:AD	0/0:0,36,167:12:12,0	0/0:0,15,173:5:5,0	0/0:0,24,175:7:7,0	0/0:0,33,247:14:14,0	0/0:0,36,240:12:12,0	0/0:0,39,123:13:13,0	0/0:1,0,157:12:14,1	0/0:0,37,147:7:7,0	0/0:0,47,123:16:16,0	0/0:0,27,159:9:9,0
-chrX	4727737	.	T	C	30.5774	.	DP=777	GT:PL:DP:AD	0/0:0,39,166:13:13,0	0/0:0,17,167:6:6,0	0/0:0,15,155:7:7,1	0/0:0,27,179:9:9,0	0/0:0,27,150:9:9,0	0/0:0,30,224:23:23,0	0/0:23,0,146:9:7,1	0/0:0,15,147:5:5,0	0/0:2,0,205:14:13,1	0/0:0,27,153:9:9,0
-chrX	4727751	.	G	A	46.7696	.	DP=1447	GT:PL:DP:AD	0/0:0,51,246:17:17,0	0/0:0,27,209:9:9,0	0/0:0,24,234:7:7,0	0/0:0,39,123:13:13,0	0/0:5,0,247:17:16,2	0/0:0,47,123:16:16,0	0/0:0,7,207:15:14,1	0/1:27,0,171:14:9,2	0/0:0,1,169:15:14,1	0/0:0,30,207:23:23,0
-chrX	4727791	.	G	T	7.23322	.	DP=2397	GT:PL:DP:AD	0/0:0,45,227:15:15,0	0/0:0,17,199:6:6,0	0/0:0,30,224:23:23,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,39,374:13:13,0	0/0:0,37,147:7:7,0	0/0:0,54,123:17:17,0	0/0:0,30,196:23:23,0
-chrX	7017146	.	C	T	245.576	.	DP=699	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,17,77:6:6,0	0/0:0,27,123:9:9,0	0/0:0,17,240:6:6,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0	0/1:13,0,170:7:7,1	0/0:0,30,123:23:23,0	0/0:0,15,151:5:5,0	0/0:0,27,242:9:9,0
-chrX	7017150	.	C	T	132.777	.	DP=697	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,17,77:6:6,0	0/0:0,27,123:9:9,0	0/0:0,17,237:6:6,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,24,207:7:7,0	0/0:0,30,123:23:23,0	0/0:0,17,166:6:6,0	0/0:0,27,227:9:9,0
-chrX	7017151	.	A	G	59.7944	.	DP=697	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,17,77:6:6,0	0/0:0,27,123:9:9,0	0/0:0,17,243:6:6,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,24,207:7:7,0	0/0:0,30,123:23:23,0	0/0:0,17,177:6:6,0	0/0:0,27,242:9:9,0
-chrX	7017156	.	C	T	259.604	.	DP=695	GT:PL:DP:AD	0/1:26,0,123:14:23,1	0/0:0,17,77:6:6,0	0/1:17,0,123:9:7,1	0/0:0,15,223:5:5,0	0/1:17,0,123:13:12,1	0/1:50,0,123:16:13,3	0/0:0,13,191:7:7,1	0/0:0,20,123:23:9,1	0/1:9,0,139:6:5,1	0/0:0,23,377:9:7,1
-chrX	7017162	.	G	A	6559	.	DP=690	GT:PL:DP:AD	0/1:123,0,27:14:1,23	0/1:35,0,19:6:1,5	0/1:254,0,31:7:1,7	0/1:171,0,22:5:1,4	0/1:252,0,44:13:2,14	0/1:123,0,67:17:3,14	0/1:156,0,36:7:1,7	0/1:175,0,59:9:2,7	0/1:131,0,39:7:1,6	1/1:247,17,0:9:1,7
-chrX	7017164	.	A	G	224.46	.	DP=675	GT:PL:DP:AD	0/1:27,0,123:14:23,1	0/1:19,0,35:6:5,1	0/0:0,24,123:7:7,0	0/1:22,0,171:5:4,1	0/0:0,39,123:13:13,0	0/0:0,37,123:17:16,1	0/0:0,27,242:9:9,0	0/0:0,27,123:9:9,0	0/0:0,37,195:7:7,0	0/0:0,27,253:9:9,0
-chrX	7017314	.	T	A	37.0693	.	DP=644	GT:PL:DP:AD	0/0:7,0,73:23:9,1	0/0:0,51,237:17:17,0	0/0:0,30,92:23:23,0	0/0:0,17,127:6:6,0	0/0:0,15,147:5:5,0	0/0:0,17,75:6:6,0	0/0:0,27,61:9:9,0	0/1:63,0,56:12:23,2	0/0:0,24,155:7:7,0	0/0:0,24,144:7:7,0
-chrX	7017407	.	T	C	19.0312	.	DP=633	GT:PL:DP:AD	0/0:0,30,126:23:23,0	0/0:0,45,372:15:15,0	0/0:0,27,75:9:9,0	0/0:0,17,127:6:6,0	0/0:0,15,147:5:5,0	0/0:0,17,95:6:6,0	0/0:0,27,61:9:9,0	0/0:0,25,157:12:14,1	0/0:0,24,155:7:7,0	0/0:0,24,144:7:7,0
-chrX	7017461	.	T	C	9.19313	.	DP=731	GT:PL:DP:AD	0/0:0,24,174:7:7,0	0/0:0,57,123:19:19,0	0/0:0,37,79:7:7,0	0/0:0,37,147:7:7,0	0/0:0,37,133:7:7,0	0/1:16,0,233:7:6,1	0/1:31,0,237:9:7,2	0/0:0,36,234:16:15,1	0/0:0,33,374:14:14,0	0/0:7,0,147:6:5,1
-chrX	7017469	.	G	A	1651.91	.	DP=737	GT:PL:DP:AD	0/1:25,0,127:7:5,2	0/0:0,17,123:19:16,2	0/0:0,1,76:9:6,3	0/0:0,12,143:7:6,1	0/1:49,0,46:6:2,4	0/1:99,0,37:7:2,6	0/1:39,0,133:23:6,4	0/0:0,30,244:17:15,2	0/1:7,0,160:23:9,1	0/0:0,23,133:6:5,1
-chrX	7017472	.	C	A	33.0377	.	DP=737	GT:PL:DP:AD	0/0:0,37,174:7:7,0	0/0:0,57,123:19:19,0	0/0:0,20,237:23:9,1	0/1:75,0,51:7:5,2	0/0:0,37,143:7:7,0	0/0:0,24,153:7:7,0	0/0:0,30,223:23:23,0	0/0:0,54,249:17:17,0	0/0:0,27,374:9:9,0	0/0:0,17,153:6:6,0
-chrX	7017476	.	A	G	1360.24	.	DP=726	GT:PL:DP:AD	0/0:0,37,174:7:7,0	0/1:40,0,225:17:12,5	0/1:16,0,63:23:9,1	0/0:0,7,160:7:5,2	0/1:64,0,47:7:5,2	0/0:0,37,157:7:7,0	0/0:0,25,233:12:14,1	0/1:142,0,125:17:23,7	0/1:123,0,79:23:3,7	0/1:16,0,134:7:6,1
-chrX	7017477	.	C	T	13.7976	.	DP=737	GT:PL:DP:AD	0/0:0,37,174:7:7,0	0/0:0,51,123:17:17,0	0/0:0,30,126:23:23,0	0/0:0,37,170:7:7,0	0/0:0,37,136:7:7,0	0/0:0,24,172:7:7,0	0/0:0,36,231:12:12,0	0/0:0,54,249:17:17,0	0/0:0,33,223:14:14,0	0/0:0,37,191:7:7,0
-chrX	7017504	.	A	T	45.459	.	DP=724	GT:PL:DP:AD	0/0:0,17,174:6:6,0	0/0:0,0,123:16:15,1	0/0:0,24,174:7:7,0	0/0:0,37,223:7:7,0	0/0:0,24,162:7:7,0	0/0:23,0,167:9:7,1	0/0:0,9,237:12:14,1	0/0:0,47,123:16:16,0	0/0:0,33,376:14:14,0	0/0:0,37,174:7:7,0
-chrX	7017519	.	G	A	60.5699	.	DP=671	GT:PL:DP:AD	0/0:0,37,200:7:7,0	0/0:0,33,123:14:14,0	0/0:0,27,172:9:9,0	0/0:0,24,123:7:7,0	0/0:0,24,135:7:7,0	0/1:37,0,171:9:7,1	0/1:64,0,242:12:23,2	0/0:0,42,123:14:14,0	0/0:0,30,203:23:23,0	0/1:19,0,153:7:6,1
-chrX	7017520	.	C	T	31.1201	.	DP=672	GT:PL:DP:AD	0/0:0,37,223:7:7,0	0/0:0,33,123:14:14,0	0/0:0,17,167:9:7,1	0/0:0,24,123:7:7,0	0/0:0,24,135:7:7,0	0/0:0,27,227:9:9,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,30,203:23:23,0	0/0:0,37,197:7:7,0
-chrX	7017525	.	C	T	124.174	.	DP=661	GT:PL:DP:AD	0/0:0,37,374:7:7,0	0/1:17,0,202:23:9,1	0/0:0,24,134:7:7,0	0/0:7,0,226:7:7,1	0/0:0,27,157:9:9,0	0/0:0,24,374:7:7,0	0/0:0,22,123:14:23,1	0/1:37,0,372:13:12,1	0/1:67,0,129:23:7,2	0/0:0,12,179:7:6,1
-chrX	7017526	.	G	A	677.261	.	DP=657	GT:PL:DP:AD	0/0:0,24,225:7:7,0	0/1:57,0,175:23:7,2	0/1:13,0,70:7:7,1	0/1:36,0,207:7:7,1	0/1:61,0,52:7:6,2	0/0:0,24,374:7:7,0	0/1:27,0,231:14:23,1	0/1:167,0,235:13:7,5	0/1:32,0,155:23:7,2	0/1:37,0,155:7:5,2
-chrX	7017529	.	G	A	5940.72	.	DP=649	GT:PL:DP:AD	0/1:156,0,13:7:1,7	0/1:202,0,7:23:1,9	1/1:231,24,0:7:0,7	1/1:123,24,0:7:0,7	1/1:134,15,0:7:1,7	1/1:374,24,0:7:0,7	0/1:240,0,24:14:2,9	1/1:220,2,0:13:1,12	1/1:197,20,0:23:1,9	0/1:137,0,37:7:2,5
-chrX	7017530	.	C	T	149.159	.	DP=640	GT:PL:DP:AD	0/1:13,0,156:7:7,1	0/0:0,27,227:9:9,0	0/0:0,24,134:7:7,0	0/0:0,24,123:7:7,0	0/0:0,24,139:7:7,0	0/0:0,24,374:7:7,0	0/1:24,0,240:14:9,2	0/0:0,36,252:12:12,0	0/0:0,27,204:9:9,0	0/1:34,0,156:7:6,2
-chrX	7017537	.	A	T	431.471	.	DP=676	GT:PL:DP:AD	0/0:0,37,207:7:7,0	0/1:57,0,175:23:7,2	0/1:19,0,131:9:7,1	0/1:36,0,207:7:7,1	0/1:61,0,47:7:6,2	0/0:0,24,374:7:7,0	0/1:24,0,251:12:14,1	0/1:129,0,171:14:23,4	0/1:32,0,155:23:7,2	0/1:16,0,155:7:6,1
-chrX	7017540	.	A	G	44.9457	.	DP=623	GT:PL:DP:AD	0/0:0,24,177:7:7,0	0/0:0,3,205:23:9,1	0/0:0,24,134:7:7,0	0/0:7,0,196:7:7,1	0/1:13,0,95:7:7,1	0/0:0,37,225:7:7,0	0/0:0,36,123:12:12,0	0/0:0,33,253:14:14,0	0/0:0,6,169:9:7,1	0/0:0,24,246:7:7,0
-chrX	7017550	.	G	A	51.9403	.	DP=596	GT:PL:DP:AD	0/0:0,24,193:7:7,0	0/0:0,27,223:9:9,0	0/0:0,30,179:23:23,0	0/0:0,24,242:7:7,0	0/0:0,30,147:23:23,0	0/0:0,24,233:7:7,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,27,197:9:9,0	0/1:39,0,175:7:6,1
-chrX	7017557	.	G	A	236.679	.	DP=557	GT:PL:DP:AD	0/0:0,24,193:7:7,0	0/0:0,27,239:9:9,0	0/0:0,27,171:9:9,0	0/0:0,24,226:7:7,0	0/1:39,0,77:23:7,2	0/1:23,0,209:9:7,1	0/1:77,0,251:14:9,2	0/0:0,15,123:12:14,1	0/0:3,0,176:7:6,2	0/1:36,0,206:7:7,1
-chrX	7017623	.	C	T	77.7376	.	DP=455	GT:PL:DP:AD	0/0:0,24,171:7:7,0	0/0:0,37,190:7:7,0	0/1:79,0,171:7:5,3	0/0:0,15,165:5:5,0	0/0:0,39,177:13:13,0	0/0:0,24,235:7:7,0	0/0:0,30,123:23:23,0	0/0:0,27,373:9:9,0	0/0:0,27,246:9:9,0	0/0:0,36,123:12:12,0
-chrX	7017630	.	C	A	44.7273	.	DP=449	GT:PL:DP:AD	0/0:0,24,171:7:7,0	0/0:3,0,203:7:7,1	0/0:0,24,123:7:7,0	0/0:0,15,179:5:5,0	0/0:7,0,77:23:9,1	0/1:27,0,372:23:9,1	0/0:0,27,123:9:9,0	0/0:0,27,373:9:9,0	0/0:0,27,237:9:9,0	0/0:0,33,123:14:14,0
-chrX	7017633	.	A	C	764.77	.	DP=445	GT:PL:DP:AD	0/0:0,24,163:7:7,0	0/1:13,0,195:7:7,1	0/1:134,0,126:7:4,3	0/1:45,0,122:5:4,1	0/0:0,20,125:23:9,1	0/0:0,30,123:23:23,0	0/1:77,0,223:7:6,2	0/1:123,0,57:9:4,5	0/1:13,0,169:7:7,1	0/1:27,0,377:14:23,1
-chrX	7017695	.	A	G	24.3164	.	DP=655	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,17,175:6:6,0	0/0:0,7,247:14:23,1	0/1:19,0,146:6:5,1	0/0:0,1,123:20:17,2	0/0:0,20,123:23:9,1	0/0:0,17,374:6:6,0	0/0:0,17,200:6:6,0	0/0:0,17,372:6:6,0	0/0:0,23,123:14:23,1
-chrX	7017712	.	G	A	51.294	.	DP=740	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,174:7:7,0	0/0:0,33,123:14:14,0	0/1:13,0,159:7:7,1	0/0:0,66,123:22:22,0	0/0:0,30,123:23:23,0	0/0:0,17,374:6:6,0	0/1:19,0,177:6:5,1	0/0:0,17,372:6:6,0	0/0:0,39,123:13:13,0
-chrX	7017720	.	G	A	260.545	.	DP=796	GT:PL:DP:AD	0/0:0,3,231:12:14,1	0/0:6,0,151:7:6,1	0/1:144,0,174:13:7,5	0/0:0,27,232:9:9,0	0/0:0,2,123:22:20,2	0/1:47,0,209:9:7,2	0/1:26,0,157:7:6,1	0/0:0,37,227:7:7,0	0/0:0,17,372:6:6,0	0/0:0,39,123:13:13,0
-chrX	7017729	.	A	G	24.9796	.	DP=740	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,24,200:7:7,0	0/0:0,45,123:15:15,0	0/0:23,0,190:9:7,1	0/0:0,75,123:25:25,0	0/0:0,27,123:9:9,0	0/1:13,0,190:7:7,1	0/1:16,0,143:7:6,1	0/0:0,17,372:6:6,0	0/0:0,39,123:13:13,0
-chrX	7017736	.	A	G	127.797	.	DP=773	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:23,0,142:7:7,1	0/1:26,0,243:16:14,2	0/0:0,27,232:9:9,0	0/0:0,72,123:24:24,0	0/1:20,0,379:9:7,1	0/0:0,27,235:9:9,0	0/0:0,37,191:7:7,0	0/0:0,27,123:9:9,0	0/0:0,42,123:14:14,0
-chrY	297125	.	C	T	94.097	.	DP=663	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/1:32,0,150:5:4,1	0/0:0,37,174:7:7,0	0/0:0,15,134:5:5,0	0/0:0,33,123:14:14,0	0/0:0,15,171:5:5,0	0/1:45,0,174:5:4,1	0/0:0,17,231:6:6,0	0/1:70,0,176:7:5,2	0/0:0,24,227:7:7,0
-chrY	297127	.	C	T	3764.2	.	DP=667	GT:PL:DP:AD	0/1:123,0,170:7:5,3	0/1:45,0,140:5:4,1	0/1:35,0,136:7:4,3	0/1:76,0,51:5:3,2	0/1:27,0,123:14:23,1	0/0:0,7,173:5:4,1	0/1:44,0,166:5:4,1	0/0:0,17,237:6:6,0	0/1:71,0,177:7:5,2	0/1:23,0,173:7:7,1
-chrY	297132	.	C	T	60.2637	.	DP=677	GT:PL:DP:AD	0/1:36,0,242:7:7,1	0/0:0,15,193:5:5,0	0/0:0,37,174:7:7,0	0/0:0,15,134:5:5,0	0/1:27,0,123:23:9,1	0/1:22,0,147:6:5,1	0/1:44,0,175:5:4,1	0/0:0,17,237:6:6,0	0/0:0,24,123:7:7,0	0/0:0,27,239:9:9,0
-chrY	297167	.	C	T	65.0719	.	DP=777	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,15,193:5:5,0	0/0:0,17,249:6:6,0	0/0:0,15,171:5:5,0	0/0:0,42,123:14:14,0	0/0:0,27,245:9:9,0	0/0:0,27,123:9:9,0	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/0:0,36,123:12:12,0
-chrY	3162737	.	A	T	320.679	.	DP=675	GT:PL:DP:AD	0/0:0,37,170:7:7,0	0/0:0,1,227:14:9,2	0/0:0,27,201:9:9,0	0/0:0,17,194:6:6,0	0/1:27,0,237:14:12,2	0/0:0,17,159:6:6,0	0/0:0,27,140:9:9,0	0/1:30,0,149:5:4,1	0/0:0,24,97:7:7,0	0/1:92,0,67:7:4,3
-chrY	3162755	.	T	A	26.656	.	DP=631	GT:PL:DP:AD	0/1:14,0,151:7:6,1	0/0:0,33,247:14:14,0	0/0:0,27,225:9:9,0	0/1:19,0,154:6:5,1	0/0:0,39,123:13:13,0	0/0:0,15,132:5:5,0	0/0:0,27,140:9:9,0	0/0:0,15,167:5:5,0	0/0:7,0,239:7:6,2	0/0:0,17,172:6:6,0
-chrY	3162760	.	A	G	46.4607	.	DP=622	GT:PL:DP:AD	0/0:0,37,173:7:7,0	0/0:0,33,247:14:14,0	0/0:0,30,239:23:23,0	0/0:0,17,190:6:6,0	0/0:0,39,123:13:13,0	0/0:0,15,132:5:5,0	0/0:0,27,140:9:9,0	0/0:0,15,167:5:5,0	0/0:0,17,146:6:6,0	0/0:0,15,145:5:5,0
-chrY	3162771	.	C	T	361.32	.	DP=596	GT:PL:DP:AD	0/1:37,0,131:7:5,2	0/0:2,0,176:23:7,2	0/1:19,0,192:9:7,1	0/0:0,17,199:6:6,0	0/1:33,0,223:12:23,2	0/0:0,15,135:5:5,0	0/0:0,27,140:9:9,0	0/1:30,0,77:5:4,1	0/0:0,24,199:7:7,0	0/1:63,0,70:5:3,2
-chrY	3162776	.	A	G	577.749	.	DP=527	GT:PL:DP:AD	0/1:20,0,171:7:5,2	0/0:0,5,177:23:9,1	0/0:0,30,247:23:23,0	0/1:16,0,151:7:6,1	0/1:60,0,171:14:9,2	0/0:0,15,79:5:5,0	0/1:55,0,56:7:5,3	0/1:29,0,79:5:4,1	0/1:23,0,166:9:7,2	0/0:0,15,124:5:5,0
-chrY	3162777	.	A	G	357.745	.	DP=570	GT:PL:DP:AD	0/1:37,0,151:7:5,2	0/0:2,0,176:23:7,2	0/1:19,0,199:9:7,1	0/0:0,17,199:6:6,0	0/1:37,0,223:12:23,2	0/0:0,15,135:5:5,0	0/0:0,24,131:7:7,0	0/1:30,0,92:5:4,1	0/0:0,24,199:7:7,0	0/1:60,0,69:6:4,2
-chrY	3162903	.	G	A	52.9167	.	DP=467	GT:PL:DP:AD	0/0:0,15,251:7:7,1	0/0:0,27,377:9:9,0	0/0:0,24,207:7:7,0	0/0:0,37,200:7:7,0	0/0:0,30,251:23:23,0	0/0:0,15,97:5:5,0	0/0:0,37,79:7:7,0	0/0:0,17,170:6:6,0	0/0:0,27,372:9:9,0	0/0:0,15,124:5:5,0
-chrY	3162904	.	C	T	230.376	.	DP=463	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,27,377:9:9,0	0/0:0,15,199:7:7,1	0/0:0,37,200:7:7,0	0/0:0,30,251:23:23,0	0/0:0,7,79:5:4,1	0/0:0,37,79:7:7,0	0/0:0,17,170:6:6,0	0/0:4,0,190:9:7,1	0/1:22,0,75:5:4,1
-chrY	3459317	.	C	T	757.093	.	DP=646	GT:PL:DP:AD	0/1:22,0,137:7:6,1	0/1:37,0,144:5:4,1	0/1:37,0,197:7:6,1	0/0:0,30,123:23:23,0	0/1:25,0,190:7:6,1	0/0:0,37,223:7:7,0	0/0:0,15,146:5:5,0	0/1:19,0,71:5:4,1	0/1:133,0,150:14:6,5	0/1:26,0,123:5:4,1
-chrY	3459425	.	G	A	743.647	.	DP=617	GT:PL:DP:AD	0/1:22,0,137:7:6,1	0/1:37,0,144:5:4,1	0/1:17,0,377:7:7,1	0/0:0,30,123:23:23,0	0/1:25,0,174:7:6,1	0/0:0,37,223:7:7,0	0/0:0,15,146:5:5,0	0/1:19,0,71:5:4,1	0/1:77,0,195:12:9,3	0/1:26,0,131:5:4,1
-chrY	3696446	.	C	T	29.1475	.	DP=700	GT:PL:DP:AD	0/0:0,33,237:14:14,0	0/0:0,37,199:7:7,0	0/1:37,0,234:12:23,2	0/0:0,9,123:17:17,1	0/0:0,33,171:14:14,0	0/0:0,5,126:14:13,1	0/0:0,33,233:14:14,0	0/0:0,36,229:12:12,0	0/0:6,0,139:13:12,1	0/0:0,42,151:14:14,0
-chrY	3696451	.	C	T	17.4657	.	DP=749	GT:PL:DP:AD	0/0:0,23,253:14:23,1	0/0:0,24,204:7:7,0	0/0:0,25,173:12:14,1	0/0:0,57,123:19:19,0	0/0:0,33,177:14:14,0	0/0:0,45,179:15:15,0	0/0:6,0,179:13:12,1	0/0:0,36,229:12:12,0	0/0:0,42,202:14:14,0	0/1:37,0,126:16:12,4
-chrY	3696454	.	G	A	61.3466	.	DP=775	GT:PL:DP:AD	0/1:12,0,223:14:23,1	0/0:3,0,192:7:7,1	0/0:0,25,173:12:14,1	0/0:0,57,123:19:19,0	0/1:14,0,146:12:14,1	0/0:0,33,177:15:14,1	0/1:19,0,202:13:14,2	0/0:0,36,229:12:12,0	0/0:0,42,202:14:14,0	0/0:0,33,197:15:14,1
-chrY	3696472	.	G	A	161.066	.	DP=2302	GT:PL:DP:AD	0/1:37,0,234:23:9,1	0/0:0,33,231:14:14,0	0/1:46,0,139:13:14,2	0/0:3,0,123:17:15,2	0/0:0,44,123:19:17,1	0/0:0,17,171:17:17,1	0/0:0,47,123:16:16,0	0/0:0,30,377:23:23,0	0/1:45,0,156:15:13,2	0/0:0,47,231:16:16,0
-chrY	3696474	.	C	T	131.075	.	DP=947	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,33,251:14:14,0	0/0:0,39,220:13:13,0	0/0:0,57,123:19:19,0	0/0:14,0,232:20:17,2	0/0:0,51,196:17:17,0	0/1:17,0,244:16:13,3	0/0:0,30,223:14:23,0	0/0:0,42,229:14:14,0	0/0:0,6,175:16:15,1
-chrY	3696527	.	G	A	72.4727	.	DP=1325	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,47,123:16:16,0	0/1:77,0,172:14:23,4	0/0:2,0,123:16:14,2	0/0:0,57,123:19:19,0	0/0:0,30,123:17:17,1	0/0:0,9,123:19:17,2	0/0:0,27,223:9:9,0	0/0:0,57,123:19:19,0	0/0:0,42,235:14:14,0
-chrY	3696565	.	A	G	93.9733	.	DP=1477	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,36,247:12:12,0	0/0:0,27,375:9:9,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,45,244:15:15,0	0/0:0,24,137:7:7,0	0/0:0,1,243:15:13,2	0/1:24,0,173:12:23,2
-chrY	3696576	.	T	C	266.677	.	DP=1319	GT:PL:DP:AD	0/1:12,0,194:14:23,1	0/0:1,0,205:12:14,1	0/1:7,0,170:23:9,1	0/0:0,33,123:14:14,0	0/1:7,0,123:13:12,1	0/0:0,27,123:17:16,1	0/0:0,33,229:14:14,0	0/1:22,0,62:5:4,1	0/0:0,42,123:14:14,0	0/1:14,0,172:14:23,1
-chrY	3713539	.	C	T	73.0406	.	DP=749	GT:PL:DP:AD	0/0:0,4,123:14:23,1	0/0:0,17,200:6:6,0	0/0:0,42,204:14:14,0	0/0:0,15,175:5:5,0	0/0:0,39,123:13:13,0	0/0:0,2,123:13:12,1	0/0:0,17,177:6:6,0	0/0:0,37,192:7:7,0	0/1:42,0,254:14:12,2	0/0:0,15,234:5:5,0
-chrY	3713557	.	G	A	174.562	.	DP=947	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:31,0,171:7:7,1	0/0:0,25,177:12:14,1	0/0:0,17,167:6:6,0	0/0:0,39,123:13:13,0	0/0:0,39,123:13:13,0	0/1:31,0,200:9:7,1	0/0:0,37,201:7:7,0	0/0:0,26,123:15:14,1	0/0:0,15,127:5:5,0
-chrY	3713560	.	G	T	162.757	.	DP=952	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:55,0,167:7:6,2	0/0:0,17,175:12:23,2	0/0:0,15,144:5:5,0	0/0:0,39,123:13:13,0	0/0:0,27,123:13:12,1	0/1:30,0,223:23:9,1	0/0:0,37,177:7:7,0	0/0:0,42,123:14:14,0	0/0:0,15,127:5:5,0
-chrY	3713570	.	T	C	123.936	.	DP=934	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,224:7:7,0	0/0:0,33,253:14:14,0	0/1:32,0,95:5:3,2	0/1:24,0,192:12:14,1	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/1:32,0,123:7:6,2	0/1:24,0,123:12:14,1	0/1:13,0,230:5:4,1
-chrY	3713572	.	G	A	399.353	.	DP=940	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,7,207:7:6,1	0/0:0,36,252:12:12,0	0/0:0,15,144:5:5,0	0/1:57,0,203:12:9,3	0/0:0,39,123:13:13,0	0/0:0,30,123:23:23,0	0/0:0,37,176:7:7,0	0/0:0,39,123:13:13,0	0/1:33,0,72:5:3,2
-chrY	3713577	.	A	G	245.553	.	DP=914	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,231:7:7,0	0/0:0,33,253:14:14,0	0/1:27,0,97:5:4,1	0/1:27,0,207:14:23,1	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/1:32,0,123:7:6,2	0/1:24,0,123:12:14,1	0/1:13,0,230:5:4,1
-chrY	3713579	.	A	T	147.714	.	DP=936	GT:PL:DP:AD	0/0:0,1,123:23:9,1	0/0:0,37,224:7:7,0	0/0:0,33,253:14:14,0	0/0:0,15,144:5:5,0	0/0:0,14,233:12:14,1	0/0:0,36,123:12:12,0	0/1:26,0,222:14:23,1	0/0:0,24,175:7:7,0	0/1:14,0,123:12:14,1	0/0:0,15,133:5:5,0
-chrY	4043374	.	T	A	9.34736	.	DP=555	GT:PL:DP:AD	0/0:0,15,153:5:5,0	0/0:0,37,223:7:7,0	0/0:0,24,123:7:7,0	0/0:0,17,239:6:6,0	0/0:0,14,123:16:15,1	0/1:37,0,233:23:7,2	0/0:0,15,244:5:5,0	0/1:25,0,222:7:6,1	0/0:12,0,377:7:6,1	0/0:0,33,123:14:14,0
-chrY	4043377	.	T	C	12.9279	.	DP=557	GT:PL:DP:AD	0/0:0,15,166:5:5,0	0/1:16,0,173:7:6,1	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/0:0,7,123:15:14,1	0/0:0,30,123:23:23,0	0/0:0,15,244:5:5,0	0/0:0,37,123:7:7,0	0/0:0,37,123:7:7,0	0/0:0,33,123:14:14,0
-chrY	4051679	.	G	A	3.77151	.	DP=602	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,15,206:5:5,0	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,37,251:7:7,0	0/0:0,24,123:7:7,0	0/0:0,15,204:5:5,0	0/0:0,17,225:6:6,0	0/0:0,30,123:23:23,0	0/0:0,27,123:9:9,0
-chrY	4051700	.	G	A	37.2792	.	DP=779	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,15,379:5:5,0	0/1:17,0,233:9:7,1	0/1:17,0,123:9:7,1	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/0:0,15,204:5:5,0	0/0:0,37,245:7:7,0	0/0:0,30,123:23:23,0	0/0:0,24,123:7:7,0
-chrY	4051705	.	G	T	263.539	.	DP=952	GT:PL:DP:AD	0/0:0,5,373:15:12,3	0/1:42,0,177:6:5,1	0/0:0,36,123:12:12,0	0/1:33,0,123:9:7,1	0/1:16,0,145:7:6,1	0/1:92,0,246:12:9,3	0/1:37,0,150:7:6,1	0/1:16,0,130:7:6,1	0/1:37,0,374:23:7,2	0/0:0,27,123:9:9,0
-chrY	4051726	.	G	T	240.01	.	DP=776	GT:PL:DP:AD	0/0:0,36,224:12:12,0	0/0:0,24,123:7:7,0	0/0:0,36,123:12:12,0	0/1:62,0,123:23:7,2	0/0:0,27,201:9:9,0	0/0:0,33,123:14:14,0	0/0:0,5,125:5:4,1	0/0:0,17,147:6:6,0	0/0:0,30,123:23:23,0	0/1:56,0,123:12:23,2
-chrY	4051752	.	C	T	295.997	.	DP=977	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/1:45,0,205:5:4,1	0/0:0,36,123:12:12,0	0/1:37,0,123:13:12,1	0/0:0,37,240:7:7,0	0/0:0,36,123:12:12,0	0/0:0,24,123:7:7,0	0/0:0,15,190:5:5,0	0/0:0,24,123:7:7,0	0/0:3,0,209:7:7,1
-chrY	4051774	.	A	G	166.025	.	DP=2340	GT:PL:DP:AD	0/0:12,0,220:16:15,1	0/1:96,0,374:7:6,2	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,24,374:7:7,0	0/0:0,36,123:12:12,0	0/0:0,37,123:7:7,0	0/0:0,17,375:6:6,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0
-chrY	4051777	.	G	T	220.093	.	DP=2319	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,37,123:7:7,0	0/0:0,36,123:12:12,0	0/1:59,0,123:14:9,2	0/0:0,24,374:7:7,0	0/0:0,39,123:13:13,0	0/0:0,23,247:7:6,1	0/0:0,37,374:7:7,0	0/0:0,30,123:23:23,0	0/1:93,0,173:9:7,2
-chrY	4053126	.	T	C	149.337	.	DP=979	GT:PL:DP:AD	0/0:0,17,205:6:6,0	0/0:0,37,123:7:7,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/1:63,0,242:23:7,2	0/0:0,24,123:7:7,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,12,123:14:23,1	0/1:30,0,123:23:9,1
-chrY	4053133	.	A	C	146.932	.	DP=979	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,37,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,9,123:12:14,1	0/1:234,0,201:23:5,4	0/0:0,24,254:7:7,0	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,3,123:23:9,1
-chrY	4053134	.	G	A	70.0712	.	DP=970	GT:PL:DP:AD	0/0:0,17,203:6:6,0	0/0:0,37,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,9,123:12:14,1	0/1:91,0,237:23:6,4	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,3,123:23:9,1
-chrY	4053145	.	T	A	2373.16	.	DP=2315	GT:PL:DP:AD	0/1:44,0,130:5:4,1	0/1:34,0,222:7:6,1	0/1:77,0,123:14:23,4	0/1:157,0,123:13:7,5	0/1:20,0,123:12:14,1	0/0:0,9,123:7:7,1	0/1:62,0,123:14:9,2	0/1:35,0,123:23:7,2	0/1:143,0,161:23:7,3	0/1:67,0,123:23:7,2
-chrY	4053532	.	T	C	917.36	.	DP=925	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,194:5:5,0	0/0:0,36,123:12:12,0	0/0:0,17,247:6:6,0	0/0:0,24,247:7:7,0	0/1:42,0,227:6:5,1	0/1:45,0,157:5:4,1	0/0:0,17,123:6:6,0	0/0:0,2,123:13:12,1	0/0:7,0,123:23:9,1
-chrY	4053533	.	T	C	136.771	.	DP=926	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/1:22,0,154:5:4,1	0/0:0,36,123:12:12,0	0/0:0,17,247:6:6,0	0/0:0,24,247:7:7,0	0/0:0,17,123:6:6,0	0/0:0,15,201:5:5,0	0/0:0,17,123:6:6,0	0/0:0,2,123:13:12,1	0/1:71,0,123:23:7,2
-chrY	4053555	.	G	A	127.097	.	DP=934	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,15,174:5:5,0	0/1:24,0,123:12:14,1	0/0:0,24,123:7:7,0	0/1:33,0,123:9:7,1	0/0:0,15,224:5:5,0	0/0:0,15,201:5:5,0	0/1:39,0,230:7:6,1	0/0:0,39,123:13:13,0	0/0:0,24,123:7:7,0
-chrY	4053556	.	C	T	67.5452	.	DP=937	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,17,199:6:6,0	0/0:0,36,123:12:12,0	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,15,224:5:5,0	0/0:0,15,223:5:5,0	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,24,123:7:7,0
-chrY	4053574	.	T	A	146.27	.	DP=952	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,24,246:7:7,0	0/0:0,36,123:12:12,0	0/0:0,37,226:7:7,0	0/0:0,27,123:9:9,0	0/0:0,17,207:6:6,0	0/1:42,0,177:6:5,1	0/0:0,24,123:7:7,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0
-chrY	4053577	.	A	G	254.493	.	DP=949	GT:PL:DP:AD	0/1:36,0,249:7:7,1	0/0:0,37,229:7:7,0	0/1:24,0,123:12:14,1	0/0:0,15,225:5:5,0	0/0:0,27,123:9:9,0	0/0:0,37,225:7:7,0	0/0:0,37,251:7:7,0	0/0:0,27,123:9:9,0	0/0:4,0,123:14:23,1	0/0:0,24,123:7:7,0
-chrY	4053639	.	A	T	376.261	.	DP=970	GT:PL:DP:AD	0/1:77,0,123:14:9,2	0/1:16,0,147:7:6,1	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/0:0,30,123:23:23,0	0/0:0,24,220:7:7,0	0/1:56,0,123:12:23,2	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/1:13,0,207:7:7,1
-chrY	4053647	.	C	T	597.627	.	DP=962	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,170:7:7,0	0/1:135,0,123:12:9,3	0/0:0,30,123:23:23,0	0/1:27,0,123:14:23,1	0/0:0,37,201:7:7,0	0/0:1,0,123:12:14,1	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/1:27,0,375:9:7,2
-chrY	4053670	.	G	A	236.796	.	DP=939	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:13,0,373:7:7,1	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,36,123:12:12,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/0:0,33,123:14:14,0
-chrY	4053677	.	C	T	297.154	.	DP=946	GT:PL:DP:AD	0/1:30,0,123:23:9,1	0/1:36,0,177:7:7,1	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/1:74,0,123:12:23,2	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/1:47,0,123:14:9,2
-chrY	4054233	.	G	T	237.594	.	DP=2356	GT:PL:DP:AD	0/0:0,15,176:5:5,0	0/0:0,15,207:5:5,0	0/0:0,42,123:14:14,0	0/0:0,12,123:13:12,1	0/1:93,0,123:13:9,4	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,12,123:13:12,1
-chrY	6707613	.	T	A	276.79	.	DP=453	GT:PL:DP:AD	0/1:23,0,194:9:7,1	0/0:0,15,177:5:5,0	0/0:0,15,165:5:5,0	0/1:16,0,226:7:6,1	0/0:0,17,165:6:6,0	0/0:0,33,123:14:14,0	0/1:95,0,235:7:4,3	0/0:0,17,161:6:6,0	0/0:0,17,229:6:6,0	0/1:23,0,165:9:7,1
-chrY	6759977	.	T	C	16.0477	.	DP=774	GT:PL:DP:AD	0/0:0,30,191:23:23,0	0/0:0,24,171:7:7,0	0/0:0,37,77:7:7,0	0/0:0,47,227:16:16,0	0/0:0,27,145:9:9,0	0/0:0,42,250:14:14,0	0/1:36,0,157:14:9,2	0/0:0,23,71:6:5,1	0/0:0,37,161:7:7,0	0/0:0,27,174:9:9,0
-chrY	6760020	.	A	G	73.9673	.	DP=750	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/0:0,27,201:9:9,0	0/0:0,17,77:6:6,0	0/0:0,39,232:13:13,0	0/0:0,37,147:7:7,0	0/0:0,27,123:15:14,1	0/1:73,0,179:13:23,3	0/0:0,7,79:5:4,1	0/0:0,27,223:9:9,0	0/0:0,33,237:14:14,0
-chrY	7120037	.	A	G	5703.09	.	DP=1566	GT:PL:DP:AD	0/1:123,0,146:32:9,23	0/1:233,0,57:13:6,7	0/1:249,0,147:27:7,20	0/1:150,0,73:14:4,7	0/1:123,0,152:22:14,14	0/1:197,0,123:55:35,20	0/1:174,0,374:23:23,13	0/1:123,0,77:22:5,17	0/1:152,0,125:23:23,13	0/1:65,0,35:7:2,5
-chrY	7120062	.	T	C	461.453	.	DP=1477	GT:PL:DP:AD	0/0:0,27,123:27:26,2	0/0:0,27,373:13:12,1	0/1:124,0,230:23:15,7	0/1:13,0,190:14:9,2	0/1:50,0,192:37:17,4	0/0:0,77,123:50:47,3	0/0:0,60,123:20:20,0	0/0:0,66,123:22:22,0	0/1:14,0,245:24:20,4	0/1:24,0,75:7:5,2
-chrY	7120143	.	A	G	17.9472	.	DP=1365	GT:PL:DP:AD	0/0:0,77,123:26:26,0	0/0:0,30,151:23:23,0	0/0:0,54,123:17:17,0	0/0:0,33,375:14:14,0	0/0:0,51,230:17:17,0	0/0:0,147,123:39:39,0	0/0:0,45,123:15:15,0	0/0:0,39,235:13:13,0	0/0:0,60,249:20:20,0	0/0:0,24,143:7:7,0
-chrY	7120146	.	G	A	3.34042	.	DP=1432	GT:PL:DP:AD	0/0:6,0,172:19:17,2	0/0:0,37,137:7:7,0	0/0:0,51,197:17:17,0	0/0:0,17,174:9:7,1	0/0:0,27,156:15:14,1	0/0:0,90,123:30:30,0	0/0:0,30,205:23:23,0	0/0:0,13,145:23:9,1	0/0:0,17,175:15:12,3	0/0:0,17,79:6:6,0
-chrY	7120147	.	G	A	305.719	.	DP=1425	GT:PL:DP:AD	0/0:0,54,227:17:17,0	0/1:67,0,36:7:3,4	0/0:0,51,197:17:17,0	0/0:0,27,172:9:9,0	0/1:37,0,99:14:12,2	0/0:0,77,123:29:29,0	0/0:0,30,223:23:23,0	0/0:0,27,144:9:9,0	0/0:0,42,190:14:14,0	0/1:14,0,31:6:4,2
-chrY	7120152	.	A	G	147.455	.	DP=2395	GT:PL:DP:AD	0/0:0,17,174:17:17,1	0/0:0,37,137:7:7,0	0/0:0,14,149:17:16,1	0/0:0,24,151:7:7,0	0/0:7,0,231:12:14,1	0/1:157,0,176:29:19,23	0/0:7,0,145:23:9,1	0/0:0,27,144:9:9,0	0/0:0,42,176:14:14,0	0/0:0,17,79:6:6,0
-chrY	7120170	.	G	A	44.4732	.	DP=975	GT:PL:DP:AD	0/0:0,30,177:16:15,1	0/0:0,24,144:7:7,0	0/0:0,27,163:15:14,1	0/0:0,17,232:6:6,0	0/0:1,0,237:14:9,2	0/0:0,66,243:22:22,0	0/0:0,27,172:9:9,0	0/0:0,15,120:7:7,1	0/0:0,36,166:12:12,0	0/0:0,17,79:6:6,0
-chrY	7120173	.	T	C	567.737	.	DP=961	GT:PL:DP:AD	0/0:0,51,223:17:17,0	0/0:0,24,144:7:7,0	0/0:0,45,170:15:15,0	0/0:0,17,232:6:6,0	0/0:0,33,147:14:14,0	0/0:0,45,227:37:20,1	0/1:236,0,55:9:3,6	0/0:0,15,120:7:7,1	0/0:0,36,166:12:12,0	0/0:0,17,79:6:6,0
-chrY	7120179	.	A	G	497.039	.	DP=913	GT:PL:DP:AD	0/0:0,22,172:16:14,2	0/1:55,0,37:7:4,4	0/0:0,29,153:15:14,1	0/0:0,23,95:6:5,1	0/1:49,0,74:23:7,2	0/0:0,63,242:37:37,0	0/0:0,24,130:7:7,0	0/0:0,17,93:6:6,0	0/1:73,0,57:12:7,4	0/1:17,0,9:5:3,2
-chrY	7120232	.	G	A	23.1952	.	DP=1433	GT:PL:DP:AD	0/1:37,0,123:26:22,4	0/0:0,27,155:13:12,1	0/0:0,66,123:22:22,0	0/1:45,0,160:13:23,3	0/0:0,51,235:17:17,0	0/0:0,97,123:45:44,1	0/0:0,14,123:17:16,1	0/0:6,0,237:16:14,2	0/0:0,47,250:37:20,1	0/0:0,24,143:7:7,0
-chrY	7123707	.	A	G	467.575	.	DP=1314	GT:PL:DP:AD	0/0:0,17,253:14:13,1	0/1:73,0,123:19:15,4	0/0:0,51,123:17:17,0	0/1:59,0,204:13:23,3	0/0:0,25,123:27:26,2	0/0:0,31,123:47:44,4	0/0:0,66,123:22:22,0	0/1:19,0,171:14:12,2	0/1:67,0,123:24:19,5	0/1:50,0,123:17:15,3
-chrY	7123715	.	G	A	91.3152	.	DP=1330	GT:PL:DP:AD	0/1:14,0,242:15:13,2	0/0:0,57,123:19:19,0	0/0:0,47,123:16:16,0	0/0:0,42,123:14:14,0	0/0:0,66,123:30:29,1	0/0:0,144,123:47:47,0	0/0:0,66,123:22:22,0	0/0:0,7,175:16:15,1	0/1:62,0,123:25:37,4	0/0:0,54,123:17:17,0
-chrY	7123720	.	C	T	1325.45	.	DP=1333	GT:PL:DP:AD	0/1:137,0,175:15:7,7	0/1:70,0,123:20:15,5	0/1:37,0,226:16:13,3	0/1:14,0,225:14:12,2	0/1:236,0,123:31:22,9	0/0:0,9,123:47:42,6	0/1:6,0,123:23:20,3	0/1:79,0,136:16:9,7	0/1:165,0,123:27:19,9	0/1:137,0,123:17:12,6
-chrY	7123725	.	A	G	492.299	.	DP=1391	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/1:70,0,123:20:16,4	0/0:0,47,123:16:16,0	0/1:73,0,200:14:23,4	0/0:0,77,123:31:30,1	0/0:0,59,123:45:42,3	0/0:0,72,123:24:24,0	0/1:39,0,174:17:14,3	0/1:59,0,123:30:24,6	0/1:47,0,123:19:16,3
-chrY	7123730	.	A	G	546.922	.	DP=714	GT:PL:DP:AD	0/1:57,0,99:9:7,2	0/0:0,24,175:7:7,0	0/1:14,0,156:14:7,4	0/0:0,37,139:7:7,0	0/0:0,45,161:15:15,0	0/1:63,0,197:26:20,6	0/0:0,17,237:6:6,0	0/0:0,37,154:7:7,0	0/0:0,36,223:12:12,0	0/1:20,0,175:7:6,1
-chrY	7123737	.	A	G	556.775	.	DP=1407	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/1:70,0,123:17:14,4	0/0:0,54,123:17:17,0	0/0:0,4,231:17:16,1	0/1:23,0,123:29:25,4	0/0:0,147,123:45:44,1	0/0:0,29,123:23:22,1	0/1:27,0,175:17:15,3	0/1:92,0,123:27:23,5	0/1:37,0,123:17:16,2
-chrY	7123749	.	C	T	124.677	.	DP=753	GT:PL:DP:AD	0/0:0,27,172:9:9,0	0/1:14,0,197:14:9,2	0/0:0,17,374:14:12,2	0/0:0,7,172:9:7,1	0/0:0,37,207:20:17,2	0/1:22,0,376:30:25,5	0/0:0,9,150:23:9,1	0/1:23,0,135:9:7,1	0/0:0,31,250:14:13,1	0/0:0,27,123:9:9,0
-chrY	7123776	.	A	G	190.97	.	DP=1224	GT:PL:DP:AD	0/1:70,0,160:15:14,4	0/0:0,54,123:17:17,0	0/1:14,0,165:16:14,2	0/0:0,54,123:17:17,0	0/0:0,90,123:30:30,0	0/0:0,129,123:43:43,0	0/1:75,0,231:19:14,5	0/0:0,54,224:17:17,0	0/0:0,77,123:26:26,0	0/1:19,0,247:14:12,2
-chrY	7123796	.	T	C	224.747	.	DP=1264	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/0:0,36,123:17:17,1	0/0:0,42,247:14:14,0	0/0:0,39,247:13:13,0	0/0:0,71,123:27:27,0	0/0:0,64,123:47:46,2	0/0:0,63,123:37:37,0	0/0:0,39,220:13:13,0	0/1:43,0,123:24:37,3	0/0:0,54,123:17:17,0
-chrY	7123913	.	C	T	527.779	.	DP=979	GT:PL:DP:AD	0/1:74,0,122:15:9,6	0/0:0,27,201:15:14,1	0/1:13,0,135:17:14,3	0/0:0,47,231:16:16,0	0/1:67,0,207:30:24,6	0/0:0,44,123:31:37,3	0/0:0,14,123:17:17,1	0/1:52,0,131:16:12,4	0/1:62,0,377:27:23,4	0/1:46,0,162:23:7,3
-chrY	7123916	.	T	G	143.069	.	DP=947	GT:PL:DP:AD	0/0:0,45,233:15:15,0	0/0:0,45,225:15:15,0	0/0:0,47,177:17:16,0	0/0:0,45,377:15:15,0	0/0:0,71,123:29:27,0	0/0:0,235,123:40:35,0	0/0:0,54,123:17:17,0	0/0:0,51,195:17:17,0	0/0:0,75,123:25:25,0	0/0:0,37,173:7:7,0
-chrY	7123922	.	T	C	3697.22	.	DP=903	GT:PL:DP:AD	0/1:172,0,5:14:3,14	0/1:90,0,145:14:7,6	0/1:233,0,36:16:7,9	0/1:72,0,127:15:23,5	0/1:235,0,45:27:7,19	0/1:179,0,170:37:26,14	0/1:17,0,227:17:15,2	0/1:52,0,96:17:12,5	0/1:145,0,147:24:13,14	0/1:136,0,30:7:2,5
-chrY	7124465	.	T	C	96.4732	.	DP=767	GT:PL:DP:AD	0/0:0,1,123:15:14,1	0/1:15,0,123:23:9,1	0/0:0,17,203:6:6,0	0/0:0,15,130:5:5,0	0/0:0,25,123:12:14,1	0/0:0,27,123:17:16,1	0/0:0,17,224:6:6,0	0/0:0,47,123:16:16,0	0/0:0,45,123:15:15,0	0/1:62,0,137:9:5,4
-chrY	7124472	.	T	C	226.314	.	DP=764	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,30,123:23:23,0	0/0:0,17,203:6:6,0	0/0:0,15,130:5:5,0	0/0:0,39,123:13:13,0	0/1:91,0,226:16:12,4	0/0:0,17,224:6:6,0	0/0:0,31,123:16:15,1	0/0:0,2,123:14:13,1	0/0:0,27,199:9:9,0
-chrY	7149942	.	C	T	131.724	.	DP=1266	GT:PL:DP:AD	0/0:4,0,204:24:37,3	0/0:0,7,70:7:7,1	0/0:0,51,177:17:17,0	0/1:16,0,55:7:6,1	0/0:0,60,176:20:20,0	0/0:0,123,222:31:31,0	0/0:0,63,123:37:37,0	0/1:36,0,152:14:14,3	0/0:0,42,173:17:17,1	0/0:0,5,37:5:4,1
-chrY	7149961	.	T	C	376.793	.	DP=1517	GT:PL:DP:AD	0/0:0,47,123:27:26,2	0/0:0,33,163:14:14,0	0/0:0,37,246:26:25,1	0/0:0,27,120:9:9,0	0/0:0,63,207:37:37,0	0/0:0,14,222:52:46,6	0/0:0,69,123:23:23,0	0/1:31,0,374:17:15,3	0/0:0,54,203:17:17,0	0/0:0,15,67:5:5,0
-chrY	92267	.	G	A	327.007	.	DP=703	GT:PL:DP:AD	0/1:30,0,220:23:9,1	0/1:19,0,177:6:5,1	0/0:0,27,123:9:9,0	0/0:7,0,252:23:9,1	0/0:4,22,191:7:6,0	0/1:24,0,123:12:14,1	0/0:0,27,235:9:9,0	0/1:16,0,143:7:6,1	0/0:0,17,233:6:6,0	0/1:42,0,146:6:5,1
-chrY	92300	.	C	T	157.474	.	DP=967	GT:PL:DP:AD	0/0:0,20,123:23:9,1	0/1:27,0,236:7:6,1	0/0:0,27,123:9:9,0	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/1:44,0,123:16:14,2	0/0:0,30,123:23:23,0	0/0:0,24,240:7:7,0	0/0:0,36,123:12:12,0	0/1:13,0,196:7:7,1
-chrY	92305	.	C	T	33.4672	.	DP=2352	GT:PL:DP:AD	0/1:30,0,123:23:9,1	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:5,0,123:14:12,2	0/0:0,27,123:9:9,0	0/0:0,45,123:15:15,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/1:44,0,123:15:12,3	0/0:0,24,235:7:7,0
-chrY	92307	.	G	A	145.775	.	DP=2346	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,24,123:7:7,0	0/1:66,0,244:9:7,2	0/0:0,45,123:15:15,0	0/1:33,0,171:9:7,1	0/1:15,0,123:15:14,1	0/0:0,27,123:9:9,0	0/0:0,30,123:23:23,0	0/0:0,45,123:15:15,0	0/1:24,0,179:7:7,1
-chrY	92317	.	C	T	52.7974	.	DP=757	GT:PL:DP:AD	0/0:0,27,171:9:9,0	0/0:0,15,137:5:5,0	0/0:0,15,47:5:5,0	0/0:0,20,179:23:9,1	0/0:0,36,233:12:12,0	0/1:75,0,16:5:3,2	0/0:0,30,166:23:23,0	0/0:0,30,232:14:13,1	0/0:0,30,223:23:23,0	0/0:0,37,70:7:7,0
-chrY	92319	.	C	T	67.9125	.	DP=752	GT:PL:DP:AD	0/0:0,27,176:9:9,0	0/0:0,15,137:5:5,0	0/0:0,15,47:5:5,0	0/0:0,17,152:9:7,1	0/0:0,36,233:12:12,0	0/1:72,0,16:5:3,2	0/0:0,30,169:23:23,0	0/0:0,22,227:14:12,2	0/0:0,30,223:23:23,0	0/0:0,37,70:7:7,0
-chrY	92322	.	C	T	1667.13	.	DP=1237	GT:PL:DP:AD	0/1:77,0,123:14:9,2	0/1:92,0,379:9:6,3	0/1:33,0,123:9:7,1	0/1:37,0,123:16:14,2	0/1:7,0,236:14:23,1	0/1:96,0,123:15:12,3	0/1:130,0,147:9:5,4	0/1:75,0,227:13:23,3	0/0:0,45,123:15:15,0	0/0:0,37,236:7:7,0
-chrY	92361	.	G	A	2355.46	.	DP=2320	GT:PL:DP:AD	0/1:57,0,123:13:14,2	0/1:50,0,375:9:7,2	0/1:30,0,175:23:9,1	0/1:27,0,237:14:12,2	0/0:0,5,123:14:13,1	0/1:67,0,123:14:14,3	0/1:232,0,167:23:6,4	0/1:74,0,224:15:14,4	0/0:0,45,123:15:15,0	0/0:0,17,156:6:6,0
-chrY	92367	.	C	T	147.655	.	DP=2313	GT:PL:DP:AD	0/1:37,0,123:13:12,1	0/0:0,27,123:9:9,0	0/1:23,0,207:9:7,1	0/0:4,0,234:14:12,2	0/0:0,45,123:15:15,0	0/1:69,0,179:14:12,2	0/0:0,27,123:9:9,0	0/0:0,33,123:15:14,1	0/0:0,42,123:14:14,0	0/0:0,37,155:7:7,0
-chrY	92369	.	C	T	4.03232	.	DP=2307	GT:PL:DP:AD	0/1:37,0,123:13:12,1	0/0:23,0,236:9:7,1	0/0:0,27,245:9:9,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/0:0,27,123:9:9,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/1:27,0,97:7:6,1
-chrY	92370	.	G	A	230.647	.	DP=2314	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:22,0,224:9:7,1	0/1:33,0,177:9:7,1	0/0:0,42,123:14:14,0	0/1:24,0,240:15:13,2	0/0:0,30,123:14:13,1	0/0:0,27,123:9:9,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/1:27,0,96:7:6,1
-chrY	92374	.	G	C	131.207	.	DP=927	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,37,229:7:7,0	0/0:0,17,139:6:6,0	0/0:0,36,123:12:12,0	0/1:74,0,207:15:12,3	0/0:1,0,201:12:14,1	0/0:0,27,123:9:9,0	0/1:37,0,199:13:12,1	0/0:0,36,123:12:12,0	0/0:0,37,155:7:7,0
-chrY	92375	.	C	T	192.705	.	DP=925	GT:PL:DP:AD	0/1:27,0,376:14:23,1	0/0:1,0,190:7:6,1	0/1:19,0,232:6:5,1	0/0:0,22,237:14:23,1	0/0:0,36,123:16:15,1	0/1:75,0,146:12:23,2	0/0:0,27,123:9:9,0	0/0:0,27,123:13:12,1	0/0:0,36,123:12:12,0	0/0:0,37,155:7:7,0
-chrY	92376	.	G	A	207.142	.	DP=915	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,37,229:7:7,0	0/1:19,0,232:6:5,1	0/0:0,33,247:14:14,0	0/0:0,47,123:16:16,0	0/1:33,0,177:12:23,2	0/0:0,27,377:9:9,0	0/0:0,39,247:13:13,0	0/1:24,0,123:12:14,1	0/0:0,37,155:7:7,0
-chrY	92401	.	G	A	126.672	.	DP=747	GT:PL:DP:AD	0/1:30,0,159:23:9,1	0/0:0,37,227:7:7,0	0/0:0,15,95:5:5,0	0/1:12,0,161:14:23,1	0/0:0,45,123:15:15,0	0/0:0,24,372:7:7,0	0/0:0,27,204:9:9,0	0/1:17,0,172:14:13,1	0/1:37,0,123:13:12,1	0/0:0,37,142:7:7,0
-chrY	92403	.	C	T	134.247	.	DP=737	GT:PL:DP:AD	0/0:7,0,171:23:9,1	0/0:0,37,227:7:7,0	0/0:0,17,97:6:6,0	0/0:0,25,200:12:14,1	0/0:0,23,123:15:14,1	0/1:77,0,77:7:6,2	0/0:0,27,204:9:9,0	0/0:0,33,244:15:14,1	0/0:0,39,123:13:13,0	0/0:0,7,232:7:5,2
-chrY	937746	.	G	C	176.495	.	DP=674	GT:PL:DP:AD	0/0:0,17,220:6:6,0	0/0:0,37,251:7:7,0	0/0:0,37,123:7:7,0	0/0:0,27,247:9:9,0	0/0:0,5,123:14:13,1	0/0:0,30,123:23:23,0	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/0:0,37,231:7:7,0	0/0:0,17,247:6:6,0
-chrY	937766	.	T	G	62.6315	.	DP=677	GT:PL:DP:AD	0/0:0,15,223:5:5,0	0/0:0,0,179:7:6,1	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,0,123:9:7,1	0/0:0,39,123:13:13,0	0/1:24,0,123:12:14,1	0/0:0,24,123:7:7,0	0/0:0,17,223:6:6,0	0/0:0,17,247:6:6,0
diff --git a/src/rust/tests/test_pheno.csv b/src/rust/tests/test_pheno.csv
deleted file mode 100644
index c34c6ab..0000000
--- a/src/rust/tests/test_pheno.csv
+++ /dev/null
@@ -1,6 +0,0 @@
-#name,poolSizes,Trait_A,Trait_B,traitA_percs,traitA_min,traitA_sig
-G1,20,0.1,83.2,0.2,0.0,0.01
-G2,20,0.3,75.3,0.4,0.0,0.01
-G3,20,0.5,49.8,0.6,0.0,0.01
-G4,20,0.7,23.9,0.8,0.0,0.01
-G5,20,0.9,12.0,1.0,0.0,0.01
diff --git a/tests/test.csv b/tests/test.csv
index 44dade9..c8189a4 100644
--- a/tests/test.csv
+++ b/tests/test.csv
@@ -1,755 +1,12669 @@
-#chr,pos,allele,Entry-0,Entry-1,Entry-2,Entry-3,Entry-4,Entry-5,Entry-6,Entry-7,Entry-8,Entry-9
-chrA,323702,A,0.142857,0,0,0.363636,0.041667,0,0.115385,0.08,0.285714,0.117647
-#chrA,323702,G,0.857143,1,1,0.636364,0.958333,1,0.884615,0.92,0.714286,0.882353
-chrA,323722,A,0.125,0,0,0,0,0,0,0,0.125,0
-#chrA,323722,G,0.875,1,1,1,1,1,1,1,0.875,1
-chrA,323723,A,0,0,0.333333,0.125,0.454545,0,0,0.444444,0,0.115385
-chrA,323723,C,1,1,0.666667,0.800,0.500000,1,1,0.555556,1,0.884615
-#chrA,323723,C,1,1,0.666667,0.875,0.545455,1,1,0.555556,1,0.884615
-chrA,323731,A,1,0.5,0.875,0.69697,0.875,0.875,0.875,0.411765,0.9,0.736842
-chrA,323731,T,0,0.5,0.125,0.30303,0.125,0.125,0.125,0.294118,0.1,0
-chrA,323731,G,0,0,0,0,0,0,0,0.294118,0,0.263158
-chrA,323732,A,0.125,0,0,0.125,0.066667,0,0,0,0,0
-chrA,323732,T,0.875,1,1,0.875,0.933333,1,1,1,1,1
-chrA,323772,A,1,1,1,1,1,0.9,1,0.923077,1,1
-chrA,323772,G,0,0,0,0,0,0.1,0,0.076923,0,0
-chrA,323773,A,0.928571,0.8,1,1,0.933333,0.777778,0.923077,1,0.857143,0.777778
-chrA,323773,G,0.071429,0.2,0,0,0.066667,0.222222,0.076923,0,0.142857,0.222222
-chrA,323774,T,0.117647,0,0,0.125,0,0.4,0.125,0,0.125,0
-chrA,323774,C,0.882353,1,1,0.875,1,0.6,0.875,1,0.875,1
-chrA,522542,T,1,1,1,1,0.958333,1,1,1,0.833333,1
-chrA,522542,C,0,0,0,0,0.041667,0,0,0,0.166667,0
-chrA,522632,C,0,0,0,0.3,0,0,0.055556,0,0,0
-chrA,522632,G,1,1,1,0.7,1,1,0.944444,1,1,1
-chrA,522667,A,0.08,0.3,0,0.125,0.222222,0,0.071429,0.095238,0.5,0.066667
-chrA,522667,G,0.92,0.7,1,0.875,0.777778,1,0.928571,0.904762,0.5,0.933333
-chrA,522670,A,0.076923,0.08,0,0,0.115385,0,0,0.095238,0.333333,0.0625
-chrA,522670,G,0.923077,0.92,1,1,0.884615,1,1,0.904762,0.666667,0.9375
-chrA,522677,T,0.923077,0.92,1,0.875,0.884615,1,0.923077,0.894737,0.666667,0.8125
-chrA,522677,C,0.076923,0.08,0,0.125,0.115385,0,0.076923,0.105263,0.333333,0.1875
-chrA,522700,A,1,1,1,1,1,0.642857,0.777778,0.75,0.714286,0.722222
-chrA,522700,C,0,0,0,0,0,0.357143,0.222222,0.25,0.285714,0.277778
-chrA,522707,C,0.958333,0.636364,0.958333,1,0.894737,1,1,0.818182,0.8,0.882353
-chrA,522707,G,0.041667,0.363636,0.041667,0,0.105263,0,0,0.181818,0.2,0.117647
-chrA,522714,C,0,0,0,0,0,0.416667,0.222222,0.142857,0.2,0.058824
-chrA,522714,G,1,1,1,1,1,0.583333,0.777778,0.857143,0.8,0.941176
-chrA,522723,T,0.958333,0.933333,1,0.9,0.631579,1,1,0.928571,0.6,0.941176
-chrA,522723,C,0.041667,0.066667,0,0.1,0.368421,0,0,0.071429,0.4,0.058824
-chrA,522746,C,0.1,0,0,0,0,0.125,0.066667,0.176471,0,0
-chrA,522746,G,0.9,1,1,1,1,0.875,0.933333,0.823529,1,1
-chrA,522765,A,0,0.133333,0.066667,0,0.125,0,0,0.15,0.3,0.055556
-chrA,522765,G,1,0.866667,0.933333,1,0.875,1,1,0.85,0.7,0.944444
-chrA,522769,T,1,0.821429,0.933333,1,0.875,1,1,0.8,0.7,0.894737
-chrA,522769,G,0,0.178571,0.066667,0,0.125,0,0,0.2,0.3,0.105263
-chrA,537230,T,0.066667,0.1,0,0.3,0,0.25,0.307692,0.066667,0.166667,0.125
-chrA,537230,C,0.933333,0.9,1,0.7,1,0.75,0.692308,0.933333,0.833333,0.875
-chrA,537402,A,0.066667,0.5,0,0,0,0.181818,0.0625,0,0,0
-chrA,537402,G,0.933333,0.5,1,1,1,0.818182,0.9375,1,1,1
-chrA,537407,T,0,0,0,0,0,0,0.0625,0,0,0
-chrA,537407,G,1,1,1,1,1,1,0.9375,1,1,1
-chrA,537423,T,0,0,0,0.4,0.076923,0,0.0625,0,0,0
-chrA,537423,C,1,1,1,0.6,0.923077,1,0.9375,1,1,1
-chrA,537432,A,1,0.6,1,1,1,0.866667,1,1,1,0.944444
-chrA,537432,G,0,0.4,0,0,0,0.133333,0,0,0,0.055556
-chrA,537447,T,1,1,1,0.8,1,1,0.894737,0.875,1,1
-chrA,537447,C,0,0,0,0.2,0,0,0.105263,0.125,0,0
-chrA,537451,A,0.125,0.4,0,0.2,0,0.071429,0.166667,0.125,0,0.166667
-chrA,537451,G,0.875,0.6,1,0.8,1,0.928571,0.833333,0.875,1,0.833333
-chrA,537454,T,0,0,0,0.2,0,0,0.105263,0.125,0,0
-chrA,537454,C,1,1,1,0.8,1,1,0.894737,0.875,1,1
-chrA,537456,A,1,1,1,0.8,1,1,0.894737,0.875,1,1
-chrA,537456,G,0,0,0,0.2,0,0,0.105263,0.125,0,0
-chrA,537479,A,1,1,1,1,1,1,1,1,0.875,1
-chrA,537479,T,0,0,0,0,0,0,0,0,0.125,0
-chrA,2309794,A,NA,0,0.125,0,0,0,0,0,0,0.041667
-chrA,2309794,G,NA,1,0.875,1,1,1,1,1,1,0.958333
-chrA,2309996,A,0.133333,NA,0.068966,0.111111,0.035714,0.15625,0,0,0.1,0.157895
-chrA,2309996,G,0.866667,NA,0.931034,0.888889,0.964286,0.84375,1,1,0.9,0.842105
-chrA,2312023,T,0.0625,0,0,0.076923,0.111111,0.04,0,0,0.041667,0.08
-chrA,2312023,C,0.9375,1,1,0.923077,0.888889,0.96,1,1,0.958333,0.92
-chrA,2312307,A,0.222222,0.25,0.315789,0.125,0.333333,0.3,0.142857,0.2,0.142857,0.5
-chrA,2312307,G,0.777778,0.75,0.684211,0.875,0.666667,0.7,0.857143,0.8,0.857143,0.5
-chrA,2312320,A,0.666667,0.821429,0.766667,0.6,0.823529,0.766667,0.7,0.6,0.75,0.583333
-chrA,2312320,G,0.333333,0.178571,0.233333,0.4,0.176471,0.233333,0.3,0.4,0.25,0.416667
-chrA,2312337,A,0.25,0.1875,0.3,0.142857,0.222222,0.3,0.222222,0.4,0.125,0.3
-chrA,2312337,G,0.75,0.8125,0.7,0.857143,0.777778,0.7,0.777778,0.6,0.875,0.7
-chrA,2312373,C,0.666667,0.538462,0.791667,0.692308,0.888889,0.5,0.75,0.545455,0.714286,0.461538
-chrA,2312373,G,0.333333,0.461538,0.208333,0.307692,0.111111,0.5,0.25,0.454545,0.285714,0.538462
-chrA,2312677,A,0,0,0.076923,0.1,0,0,0,0,0,0.08
-chrA,2312677,G,1,1,0.923077,0.9,1,1,1,1,1,0.92
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diff --git a/tests/test.sync b/tests/test.sync
index bfadf72..03e7ce5 100644
--- a/tests/test.sync
+++ b/tests/test.sync
@@ -1,377 +1,6675 @@
-#chr	pos	ref	Entry-0	Entry-1	Entry-2	Entry-3	Entry-4	Entry-5	Entry-6	Entry-7	Entry-8	Entry-9
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-chrA	2312023	C	0:1:15:0:0:0	0:0:7:0:0:0	0:0:26:0:0:0	0:1:12:0:0:0	0:3:24:0:0:0	0:1:24:0:0:0	0:0:13:0:0:0	0:0:16:0:0:0	0:1:23:0:0:0	0:2:23:0:0:0
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-chrA	2312726	C	7:0:5:0:0:0	7:0:0:0:0:0	15:0:2:0:0:0	9:0:7:0:0:0	14:0:1:0:0:0	13:0:5:0:0:0	7:0:6:0:0:0	7:0:3:0:0:0	15:0:3:0:0:0	9:0:5:0:0:0
-chrA	2312937	G	5:0:0:2:0:0	5:0:0:1:0:0	7:0:0:2:0:0	23:0:0:7:0:0	14:0:0:4:0:0	7:0:0:7:0:0	7:0:0:2:0:0	6:0:0:3:0:0	12:0:0:6:0:0	6:0:0:7:0:0
-chrA	2312965	T	0:0:5:0:0:0	0:0:5:0:0:0	0:0:9:0:0:0	0:1:12:0:0:0	0:2:23:0:0:0	0:2:12:0:0:0	0:0:9:0:0:0	0:3:7:0:0:0	0:1:12:0:0:0	0:2:6:0:0:0
-chrA	2313022	T	6:1:0:0:0:0	3:2:0:0:0:0	4:4:0:0:0:0	5:3:0:0:0:0	14:3:0:0:0:0	7:3:0:0:0:0	7:1:0:0:0:0	7:2:0:0:0:0	23:2:0:0:0:0	5:6:0:0:0:0
-chrA	2313052	C	0:0:6:0:0:0	0:0:6:0:0:0	0:1:7:0:0:0	0:2:7:0:0:0	0:0:16:0:0:0	0:0:13:0:0:0	0:0:23:0:0:0	0:1:9:0:0:0	0:2:9:0:0:0	0:2:9:0:0:0
-chrA	2313077	C	0:4:3:0:0:0	0:4:2:0:0:0	0:6:5:0:0:0	0:7:7:0:0:0	0:13:2:0:0:0	0:23:4:0:0:0	0:7:2:0:0:0	0:3:6:0:0:0	0:7:2:0:0:0	0:7:4:0:0:0
-chrA	2313144	C	0:0:9:0:0:0	0:0:7:1:0:0	0:0:14:1:0:0	0:0:17:0:0:0	0:0:37:2:0:0	0:0:13:2:0:0	0:0:23:1:0:0	0:0:7:2:0:0	0:0:14:1:0:0	0:0:16:0:0:0
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+Chromosome4	207215602	T	0:25:0:0:0:0	0:20:1:0:0:0	0:23:0:3:0:0	0:37:1:0:0:0	0:20:1:0:0:0
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+Chromosome5	41714540	T	0:1:2:0:0:0	0:4:0:0:0:0	0:3:2:0:0:0	0:1:1:0:0:0	0:4:1:0:0:0
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+Chromosome5	46304753	T	1:2:0:0:0:0	2:4:0:0:0:0	1:6:0:0:0:0	1:7:0:0:0:0	1:3:0:0:0:0
+Chromosome5	46311998	T	0:7:0:0:0:0	0:13:0:0:0:0	0:20:1:0:0:0	0:13:3:0:0:0	0:16:2:0:0:0
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+Chromosome5	126681351	C	0:1:0:0:0:0	0:2:1:0:0:0	0:1:2:0:0:0	0:2:3:0:0:0	0:0:2:0:0:0
+Chromosome5	126681380	T	1:0:0:0:0:0	1:2:0:0:0:0	1:2:0:0:0:0	1:4:0:0:0:0	0:2:0:0:0:0
+Chromosome5	126681387	A	0:0:0:1:0:0	1:0:0:2:0:0	1:0:0:2:0:0	3:0:0:2:0:0	1:0:0:1:0:0
+Chromosome5	126681489	C	0:0:0:1:0:0	0:0:2:1:0:0	0:0:2:1:0:0	0:0:3:2:0:0	0:0:2:0:0:0
+Chromosome5	126681498	C	0:1:0:0:0:0	0:1:2:0:0:0	0:1:2:0:0:0	0:2:3:0:0:0	0:1:1:0:0:0
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+Chromosome5	127397745	C	0:2:0:0:0:0	0:2:1:0:0:0	0:4:1:0:0:0	0:0:2:0:0:0	0:2:2:0:0:0
+Chromosome5	127598916	A	4:0:0:1:0:0	5:0:0:2:0:0	5:0:0:1:0:0	5:0:0:0:0:0	2:0:0:1:0:0
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+Chromosome5	128203562	C	17:0:3:0:0:0	5:0:1:0:0:0	8:0:1:0:0:0	6:0:2:0:0:0	14:0:4:0:0:0
+Chromosome5	128203564	C	17:0:3:0:0:0	5:0:1:0:0:0	8:0:1:0:0:0	5:0:2:0:0:0	14:0:3:0:0:0
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+Chromosome5	129671425	C	2:0:294:0:0:0	0:2:141:0:0:0	0:0:252:0:0:0	0:1:167:0:0:0	2:1:328:0:0:0
+Chromosome5	129671428	C	0:0:296:0:0:0	0:1:145:0:0:0	2:0:254:0:0:0	1:0:168:0:0:0	1:1:331:0:0:0
+Chromosome5	129671438	G	0:0:1:294:0:0	0:0:0:147:0:0	0:2:0:250:0:0	1:0:1:166:0:0	1:1:0:331:0:0
+Chromosome5	129671446	T	1:295:0:0:0:0	0:147:0:0:0:0	2:248:0:0:0:0	1:170:0:0:0:0	3:336:0:1:0:0
+Chromosome5	129671455	G	1:0:0:297:0:0	1:0:0:146:0:0	2:1:0:248:0:0	0:0:0:166:0:0	4:0:0:330:0:0
+Chromosome5	129671459	C	1:1:291:0:0:0	0:0:146:0:0:0	1:1:250:0:0:0	1:0:169:0:0:0	0:1:338:0:0:0
+Chromosome5	129671461	G	1:1:1:294:0:0	1:0:0:147:0:0	1:0:0:249:0:0	0:0:0:170:0:0	1:0:0:336:0:0
+Chromosome5	129671463	G	2:0:1:295:0:0	0:0:1:147:0:0	0:0:0:254:0:0	0:1:0:169:0:0	2:0:0:338:0:0
+Chromosome5	129671469	T	1:293:1:0:1:0	0:146:1:0:0:0	0:252:1:0:0:0	0:167:0:0:0:0	0:333:0:1:0:0
+Chromosome5	129671470	C	0:8:284:0:1:0	0:7:140:0:0:0	0:10:242:0:0:0	0:2:167:0:0:0	0:5:324:0:0:0
+Chromosome5	129671478	C	2:0:292:0:0:0	0:1:144:0:0:0	0:0:248:0:0:0	0:3:167:0:0:0	0:1:334:0:0:0
+Chromosome5	129671479	G	1:0:0:296:0:0	0:0:0:146:0:0	1:0:0:254:0:0	1:1:0:167:0:0	1:0:0:335:0:0
+Chromosome5	129671480	G	3:0:0:291:0:0	1:2:0:144:0:0	2:0:1:252:0:0	1:1:0:168:0:0	0:3:0:335:0:0
+Chromosome5	129671485	G	3:0:1:292:0:0	1:0:0:145:0:0	1:1:0:251:0:0	0:1:0:164:0:0	0:1:0:336:0:0
+Chromosome5	129671487	C	4:2:292:0:0:0	2:2:144:0:0:0	1:0:253:0:0:0	1:0:169:0:0:0	2:1:333:0:0:0
+Chromosome5	129671496	G	0:1:0:292:0:0	0:1:0:145:0:0	1:0:0:242:0:0	0:1:1:168:0:0	1:1:0:328:0:0
+Chromosome5	129671503	A	284:1:0:0:0:0	140:0:0:1:0:0	246:0:0:1:0:0	168:0:1:0:0:0	324:1:0:0:0:0
+Chromosome5	129671510	C	1:4:288:0:0:0	0:3:144:0:0:0	2:3:244:0:0:0	0:3:163:0:0:0	2:5:323:0:0:0
+Chromosome5	129671512	G	2:5:0:289:0:0	3:0:0:143:0:0	1:0:0:249:0:0	0:3:0:165:0:0	0:4:1:321:0:0
+Chromosome5	129671520	C	0:1:293:0:0:0	0:1:146:1:0:0	0:1:252:0:0:0	0:2:165:0:0:0	1:0:336:0:0:0
+Chromosome5	129671533	G	1:0:0:290:0:0	1:0:0:143:0:0	2:1:1:246:0:0	3:0:0:168:0:0	2:0:0:327:0:0
+Chromosome5	129671536	G	1:0:0:292:0:0	1:0:0:145:0:0	1:0:0:249:0:0	1:0:0:167:0:0	0:0:0:329:0:0
+Chromosome5	129671539	A	288:0:0:0:0:0	141:0:0:1:0:0	238:0:0:1:0:0	164:0:0:1:0:0	328:0:0:2:0:0
+Chromosome5	129671541	G	1:0:0:289:0:0	1:0:0:142:0:0	0:0:0:248:0:0	0:1:0:164:0:0	2:2:0:327:0:0
+Chromosome5	129671545	C	0:1:288:0:0:0	0:2:142:0:0:0	0:4:243:0:0:0	0:2:165:0:0:0	0:7:318:0:0:0
+Chromosome5	129671557	G	1:1:0:282:0:0	0:0:0:142:0:0	0:1:0:235:0:0	0:1:0:164:0:0	1:1:0:323:0:0
+Chromosome5	129671563	C	0:1:270:0:0:0	0:1:130:0:0:0	0:1:234:0:0:0	0:1:155:0:0:0	1:0:312:0:0:0
+Chromosome5	129671565	C	1:0:285:0:0:0	0:1:143:0:0:0	0:2:239:0:0:0	0:3:159:0:0:0	0:0:325:0:0:0
+Chromosome5	129671566	G	1:1:0:279:0:0	0:0:0:138:0:0	1:2:0:230:0:0	3:3:0:150:0:0	3:3:0:297:0:0
+Chromosome5	129671567	G	3:1:0:259:0:0	4:0:0:123:0:0	1:1:0:215:0:0	6:0:0:144:0:0	1:0:0:296:0:0
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+Chromosome5	129671705	C	0:8:268:0:0:0	0:6:138:0:0:0	0:7:230:0:0:0	1:4:156:0:0:0	1:5:310:1:0:0
+Chromosome5	129671706	T	0:270:0:5:0:0	0:135:0:3:0:0	0:236:0:1:0:0	0:163:1:0:0:0	0:301:0:6:0:0
+Chromosome5	129671707	C	0:2:276:0:0:0	0:0:145:0:0:0	0:3:240:1:0:0	0:2:165:0:0:0	0:2:314:0:0:0
+Chromosome5	129671708	G	0:0:0:283:0:0	1:0:0:142:0:0	2:0:0:246:0:0	3:0:0:160:0:0	3:0:0:322:0:0
+Chromosome5	129671713	C	0:1:287:0:0:0	0:1:144:0:0:0	1:5:236:1:0:0	0:2:161:0:0:0	0:3:322:0:0:0
+Chromosome5	129671714	A	274:1:0:0:0:0	141:1:0:0:0:0	237:1:0:1:0:0	161:1:0:0:0:0	316:1:0:0:0:0
+Chromosome5	129671715	G	9:0:0:276:0:0	6:1:0:136:0:0	9:0:0:238:0:0	4:1:0:163:0:0	13:1:0:314:0:0
+Chromosome5	129671716	C	1:4:280:0:0:0	1:0:139:0:0:0	0:0:243:0:0:0	2:0:160:1:0:0	1:2:320:0:0:0
+Chromosome5	129671717	T	0:269:4:1:0:0	0:131:1:1:0:0	0:235:0:0:0:0	0:161:1:0:0:0	0:304:3:0:0:0
+Chromosome5	129671736	G	0:1:0:287:0:0	1:0:0:145:0:0	0:0:0:248:0:0	0:1:0:166:0:0	2:1:0:326:0:0
+Chromosome5	129671740	C	0:2:292:0:0:0	0:0:144:0:0:0	0:1:255:0:0:0	0:1:168:0:0:0	1:2:325:0:0:0
+Chromosome5	129671742	G	2:0:0:290:0:0	0:0:0:145:0:0	1:0:0:252:0:0	2:0:0:165:0:0	2:0:0:334:0:0
+Chromosome5	129671759	C	0:0:292:0:0:0	0:1:144:0:0:0	0:2:252:0:0:0	1:0:168:0:0:0	0:1:327:1:0:0
+Chromosome5	129671760	G	2:0:0:288:0:0	1:0:0:145:0:0	0:1:0:247:0:0	0:0:0:165:0:0	2:0:0:325:0:0
+Chromosome5	129671770	G	0:1:0:290:0:0	0:0:0:144:0:0	1:3:0:248:0:0	0:1:0:166:0:0	0:2:0:327:0:0
+Chromosome5	129671780	C	0:1:296:0:0:0	0:1:144:0:0:0	0:4:250:0:0:0	0:0:169:0:0:0	0:1:336:0:0:0
+Chromosome5	129671782	G	1:1:0:291:0:0	1:0:1:146:0:0	0:0:0:254:0:0	1:0:0:168:0:0	0:2:0:327:0:0
+Chromosome5	129671788	C	0:0:300:0:0:0	1:0:146:0:0:0	0:1:254:0:0:0	0:0:168:0:0:0	0:3:334:0:0:0
+Chromosome5	129671790	C	0:1:295:0:0:0	0:1:145:0:0:0	1:0:252:0:0:0	0:0:168:0:0:0	0:1:335:0:0:0
+Chromosome5	129671791	C	1:1:296:0:0:0	1:0:145:0:0:0	1:3:250:1:0:0	0:1:161:0:0:0	0:0:335:0:0:0
+Chromosome5	129671793	G	1:0:0:292:0:0	0:0:0:148:0:0	0:1:0:248:0:0	1:0:0:169:0:0	1:0:0:329:0:0
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+Chromosome5	132004819	T	1:6:0:0:0:0	0:8:0:0:0:0	1:19:0:0:0:0	4:9:0:0:0:0	1:11:0:0:0:0
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+Chromosome5	132004990	T	4:3:0:0:0:0	5:3:0:0:0:0	9:11:0:0:0:0	6:7:0:0:0:0	8:5:0:0:0:0
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+Chromosome5	138245504	C	92:0:17:0:0:0	33:0:21:0:0:0	45:0:29:0:0:0	44:0:24:0:0:0	64:0:17:0:0:0
+Chromosome5	138463813	T	1:2:0:0:0:0	0:2:0:0:0:0	1:4:0:0:0:0	1:0:0:0:0:0	1:1:0:0:0:0
+Chromosome5	138463814	C	1:0:2:0:0:0	0:0:2:0:0:0	1:0:4:0:0:0	1:0:0:0:0:0	1:0:1:0:0:0
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+Chromosome5	143177308	T	0:4:1:0:0:0	0:1:0:0:0:0	0:1:1:0:0:0	0:1:1:0:0:0	0:0:1:0:0:0
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+Chromosome5	150964723	T	0:4:0:0:0:0	0:2:1:0:0:0	0:2:1:0:0:0	0:1:1:0:0:0	0:1:1:0:0:0
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+Chromosome6	14888039	C	0:1:4:0:0:0	0:4:1:0:0:0	0:1:4:0:0:0	0:0:2:0:0:0	0:1:2:0:0:0
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+Chromosome6	14888085	C	0:0:3:0:0:0	0:3:4:0:0:0	0:1:2:0:0:0	0:2:0:0:0:0	0:2:1:0:0:0
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+Chromosome6	15160976	T	0:1:0:1:0:0	0:0:0:2:0:0	0:1:0:2:0:0	0:5:0:5:0:0	0:1:0:3:0:0
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+Chromosome6	15161038	A	0:0:1:0:0:0	4:0:1:0:0:0	2:0:0:1:0:0	9:0:1:0:0:0	4:0:0:0:0:0
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+Chromosome6	15161438	C	4:0:1:0:0:0	1:0:3:0:0:0	3:0:1:0:0:0	5:0:3:0:0:0	3:0:2:0:0:0
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+Chromosome6	15161510	T	0:2:0:2:0:0	0:1:0:1:0:0	0:6:0:0:0:0	0:4:0:2:0:0	0:1:0:3:0:0
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+Chromosome6	15161597	T	0:1:0:3:0:0	0:1:0:1:0:0	0:3:0:2:0:0	0:3:0:4:0:0	0:2:0:3:0:0
+Chromosome6	15161614	G	0:2:0:1:0:0	0:1:0:1:0:0	0:1:0:4:0:0	0:2:0:5:0:0	0:0:0:2:0:0
+Chromosome6	15345823	C	0:4:41:0:0:0	0:1:52:0:0:0	0:2:62:0:0:0	0:1:35:0:0:0	0:7:75:1:0:0
+Chromosome6	15345829	C	0:1:45:0:0:0	0:2:51:2:0:0	0:2:62:0:0:0	0:1:35:0:0:0	1:0:83:0:0:0
+Chromosome6	15345833	C	0:1:44:0:0:0	0:3:50:0:0:0	0:1:61:0:0:0	0:0:36:0:0:0	0:3:81:0:0:0
+Chromosome6	15345834	C	1:0:44:0:0:0	2:0:52:0:0:0	5:1:57:0:0:0	1:0:35:0:0:0	7:0:73:1:0:0
+Chromosome6	15345836	T	0:47:0:0:0:0	1:54:0:0:0:0	0:61:2:0:0:0	1:36:0:0:0:0	1:83:0:0:0:0
+Chromosome6	15345841	C	0:2:45:0:0:0	1:3:53:0:0:0	1:2:61:0:0:0	0:2:35:0:0:0	2:2:80:0:0:0
+Chromosome6	15345842	G	2:0:0:43:0:0	3:0:0:54:0:0	2:0:0:61:0:0	4:0:0:33:0:0	5:0:0:78:0:0
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+Chromosome6	15345854	T	0:5:0:0:0:0	0:6:0:0:4:0	0:13:0:0:1:0	0:7:0:0:1:0	0:9:0:0:0:0
+Chromosome6	15345859	A	0:0:4:0:0:0	0:0:5:0:4:0	2:0:13:0:1:0	0:0:6:0:1:0	1:0:9:0:0:0
+Chromosome6	15345867	C	0:8:40:0:0:0	0:8:49:0:0:0	0:9:57:0:0:0	1:6:30:0:0:0	0:5:79:0:0:0
+Chromosome6	15345868	G	1:0:0:46:0:0	1:0:1:56:0:0	1:0:0:65:0:0	3:0:3:31:0:0	4:0:0:80:0:0
+Chromosome6	15345875	C	0:3:44:0:0:0	0:2:56:0:0:0	0:2:64:0:0:0	0:1:35:1:0:0	0:2:87:0:0:0
+Chromosome6	15345888	C	0:0:49:0:0:0	0:1:60:0:0:0	1:0:67:1:1:0	0:1:36:0:0:0	0:1:88:0:0:0
+Chromosome6	15345895	G	0:7:0:44:0:0	0:5:0:59:0:0	0:5:0:64:0:0	0:0:0:37:0:0	1:3:1:83:0:0
+Chromosome6	15345896	C	0:0:51:0:0:0	0:1:63:0:0:0	0:0:71:0:0:0	0:0:37:0:0:0	1:1:87:0:0:0
+Chromosome6	15345901	A	48:0:0:0:0:0	57:0:0:0:0:0	57:0:0:0:0:0	31:0:0:1:0:0	82:0:0:0:0:0
+Chromosome6	15345903	C	0:0:45:0:0:0	1:0:58:0:0:0	1:0:61:0:1:0	1:0:37:0:0:0	0:1:85:0:0:0
+Chromosome6	15345905	C	1:0:46:0:0:0	0:0:59:0:0:0	0:0:63:0:0:0	0:0:38:0:0:0	0:0:87:0:0:0
+Chromosome6	15345906	A	45:0:0:0:1:0	58:0:0:0:0:0	58:2:0:0:1:0	34:0:0:0:0:0	85:1:0:0:1:0
+Chromosome6	15345907	T	1:34:0:0:1:0	1:49:0:0:0:0	1:54:0:1:1:0	1:30:0:0:0:0	0:71:0:0:1:0
+Chromosome6	15345908	G	3:1:0:27:4:0	1:1:0:49:2:0	2:0:0:49:6:0	0:3:0:27:2:0	1:2:0:64:4:0
+Chromosome6	15345909	T	0:21:2:0:0:0	0:26:4:0:0:0	0:29:3:0:0:0	0:14:2:0:0:0	0:42:1:0:0:0
+Chromosome6	15345922	T	0:44:0:0:3:0	1:64:0:0:0:0	0:68:0:0:0:0	0:42:1:0:0:0	1:83:0:1:3:0
+Chromosome6	15345923	A	10:0:0:36:3:0	16:1:0:48:0:0	18:0:0:48:0:0	20:0:0:22:0:0	19:0:0:68:3:0
+Chromosome6	15345924	C	5:2:40:1:2:0	7:4:50:1:0:0	5:4:61:0:0:0	1:2:39:1:0:0	5:6:75:0:2:0
+Chromosome6	15345930	G	2:0:0:48:0:0	4:0:0:62:0:0	2:2:0:68:0:0	2:0:0:41:0:0	2:0:0:89:0:0
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+Chromosome6	15345954	C	0:0:51:0:0:0	0:4:60:0:0:0	0:1:70:0:0:0	0:1:41:0:0:0	0:2:89:0:0:0
+Chromosome6	15345955	G	1:0:0:50:0:0	1:0:0:62:0:0	1:0:0:71:0:0	1:0:0:43:0:0	2:0:0:89:0:0
+Chromosome6	15345964	C	0:7:44:0:0:0	0:7:58:0:0:0	0:9:63:0:0:0	0:9:35:0:0:0	0:11:79:0:0:0
+Chromosome6	15345973	G	2:0:0:52:0:0	2:0:0:71:0:0	0:0:0:78:0:0	0:1:0:46:0:0	3:0:0:95:0:0
+Chromosome6	15345975	C	0:2:51:0:0:0	0:2:63:0:0:0	0:3:65:1:3:0	0:0:40:1:0:0	1:3:88:0:1:0
+Chromosome6	15345976	G	0:0:0:48:0:0	0:1:0:63:0:0	6:0:0:68:0:0	0:1:0:41:0:0	2:0:0:86:0:0
+Chromosome6	15345980	C	0:0:50:0:0:0	0:2:58:0:0:0	0:1:71:0:0:0	0:1:40:0:0:0	0:1:88:0:0:0
+Chromosome6	15345981	A	14:36:0:0:0:0	21:41:0:0:0:0	30:42:0:0:0:0	18:23:0:0:0:0	25:61:1:0:0:0
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+Chromosome6	15345987	G	2:0:0:48:0:0	2:0:0:60:0:0	7:0:0:65:0:0	1:0:0:40:0:0	7:0:0:82:0:0
+Chromosome6	15345993	C	0:0:49:0:0:0	1:1:60:0:0:0	1:0:70:0:0:0	1:0:39:0:0:0	1:0:85:1:0:0
+Chromosome6	15345996	C	0:1:47:0:0:0	0:1:61:0:0:0	0:5:65:0:1:0	0:1:38:0:0:0	0:4:83:1:0:0
+Chromosome6	15345997	G	2:0:0:47:0:0	2:0:0:60:0:0	3:0:0:68:1:0	1:0:0:40:0:0	0:0:0:89:0:0
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+Chromosome6	15346029	C	0:5:46:0:0:0	0:6:55:0:0:0	0:13:52:1:0:0	0:0:42:0:0:0	3:9:73:0:0:0
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+Chromosome7	264316392	C	0:5:4:0:0:0	0:2:2:0:0:0	0:5:3:0:0:0	0:3:6:0:0:0	1:1:6:0:0:0
+Chromosome7	264318639	T	0:1:6:0:0:0	0:3:1:0:0:0	0:5:2:0:0:0	0:6:3:0:0:0	0:4:3:0:0:0
+Chromosome7	264318695	T	4:3:0:0:0:0	1:4:0:0:0:0	1:5:0:0:0:0	1:8:0:0:0:0	0:7:0:0:0:0
+Chromosome7	264318859	C	2:0:4:0:0:0	5:0:2:0:0:0	2:0:5:0:0:0	2:0:8:0:0:0	2:0:8:0:0:0
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+Chromosome7	264324860	T	0:3:0:0:0:0	1:2:0:0:0:0	1:4:0:0:0:0	1:3:0:0:0:0	1:7:0:0:0:0
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+Chromosome7	264325730	C	0:2:4:0:0:0	0:7:2:0:0:0	0:2:3:0:0:0	0:7:9:0:0:0	0:5:3:0:0:0
+Chromosome7	264325732	C	0:0:7:0:0:0	0:1:8:0:0:0	0:1:4:0:0:0	0:4:12:0:0:0	0:2:6:0:0:0
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+Chromosome7	264325841	G	1:0:0:6:0:0	1:0:0:8:0:0	1:0:0:5:0:0	3:0:0:13:0:0	0:0:0:8:0:0
+Chromosome7	264325865	C	0:0:5:0:0:0	1:0:6:0:0:0	1:0:5:0:0:0	1:0:12:0:0:0	2:0:6:0:0:0
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+Chromosome7	264369482	T	0:6:2:0:0:0	0:3:1:0:0:0	0:10:0:0:0:0	0:4:3:0:0:0	0:4:2:0:0:0
+Chromosome7	264369516	T	4:3:0:0:0:0	2:2:0:0:0:0	6:3:0:0:0:0	2:4:0:0:0:0	4:2:0:0:0:0
+Chromosome7	264369664	T	0:7:1:0:0:0	0:4:0:0:0:0	0:7:3:0:0:0	0:4:1:0:0:0	0:5:1:0:0:0
+Chromosome7	267809414	T	0:2:2:0:0:0	0:2:1:0:0:0	0:3:1:0:0:0	0:1:0:0:0:0	0:0:2:0:0:0
+Chromosome7	269516894	C	0:2:0:0:0:0	0:2:2:0:0:0	0:0:1:0:0:0	0:1:2:0:0:0	0:3:2:0:0:0
+Chromosome7	269516938	A	1:0:0:1:0:0	3:0:0:1:0:0	1:0:0:0:0:0	2:0:0:1:0:0	4:0:0:1:0:0
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+Chromosome7	273482693	C	0:1:19:0:0:0	1:0:10:0:0:0	0:0:29:0:0:0	2:0:16:0:0:0	2:0:31:0:0:0
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+Chromosome7	273931396	T	1:0:1:0:0:0	1:0:0:0:0:0	0:2:0:0:0:0	2:0:2:0:0:0	0:5:0:0:1:0
+Chromosome7	275764268	C	1:0:2:0:0:0	1:0:1:0:0:0	0:1:1:0:0:0	0:0:1:0:0:0	0:0:3:1:0:0
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+Chromosome7	277052999	T	0:37:1:0:0:0	0:40:3:0:0:0	0:76:7:0:0:0	0:66:4:0:0:0	0:77:5:0:0:0
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+Chromosome7	277053053	C	0:0:39:0:0:0	0:1:42:0:0:0	0:1:84:0:0:0	0:1:68:1:0:0	0:1:83:0:0:0
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+Chromosome7	277053134	T	0:36:1:0:0:0	0:40:1:0:0:0	0:81:0:1:0:0	0:65:0:0:0:0	0:79:1:1:0:0
+Chromosome7	277053140	C	0:0:35:1:0:0	0:0:39:2:0:0	0:0:81:1:0:0	0:0:63:0:0:0	0:0:77:2:0:0
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+Chromosome7	281616046	T	0:6:2:0:0:0	0:13:3:0:0:0	0:19:2:0:0:0	0:14:2:0:0:0	0:12:0:0:0:0
+Chromosome7	284611419	G	0:0:0:2:0:0	1:0:0:8:0:0	0:0:0:15:0:0	0:0:0:8:0:0	0:0:0:3:0:0
+Chromosome7	285296406	C	0:1:12:0:0:0	0:1:8:0:0:0	0:1:13:0:0:0	0:0:5:0:0:0	0:2:7:0:0:0
+Chromosome7	285702978	C	0:0:1:0:0:0	0:1:3:0:0:0	0:1:12:0:0:0	0:1:12:0:0:0	0:0:9:1:0:0
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+Chromosome7	285703143	C	0:0:1:0:0:0	0:1:3:0:0:0	0:2:12:0:0:0	0:2:11:0:0:0	0:4:6:0:0:0
+Chromosome7	286028370	T	1:7:0:0:0:0	3:0:0:0:0:0	2:4:0:0:0:0	2:3:0:0:0:0	1:2:0:0:0:0
+Chromosome7	286037366	C	0:0:2:0:0:0	1:0:1:0:0:0	1:0:0:0:0:0	1:0:4:0:0:0	1:0:2:0:0:0
+Chromosome7	287342341	A	4:0:0:0:0:0	1:0:0:1:0:0	3:0:0:1:0:0	1:0:0:1:0:0	2:0:0:2:0:0
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+Chromosome7	292529792	T	1:1:0:0:0:0	1:2:0:0:0:0	1:0:0:0:0:0	0:1:0:0:0:0	2:1:0:0:0:0
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+Chromosome7	294981587	C	0:0:10:0:0:0	0:1:19:0:0:0	1:0:35:0:0:0	1:1:47:0:0:0	0:2:38:0:0:0
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+Chromosome7	294981692	C	1:0:9:0:0:0	0:2:17:1:0:0	0:1:34:0:0:0	0:2:34:2:0:0	0:2:34:0:0:0
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+Chromosome7	294981715	C	0:1:8:0:0:0	0:1:18:0:0:0	2:2:31:0:0:0	0:0:38:1:0:0	0:4:30:0:0:0
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+Chromosome7	294982447	T	1:4:0:0:0:0	8:40:0:0:0:0	2:19:0:0:0:0	15:71:1:0:0:0	2:9:0:0:0:0
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+Chromosome7	321244318	T	0:0:1:0:0:0	0:2:2:0:0:0	0:3:1:0:1:0	0:3:2:0:0:0	0:2:0:0:0:0
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+Chromosome7	323979572	T	0:2:3:0:0:0	0:3:6:0:0:0	0:4:2:0:0:0	0:3:3:0:0:0	0:0:4:0:0:0
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diff --git a/tests/test.vcf b/tests/test.vcf
index d3fc212..7fa36f0 100644
--- a/tests/test.vcf
+++ b/tests/test.vcf
@@ -8,8 +8,8 @@
 ##fileformat=VCFv4.2
 ##reference=file:reference.fna
 #CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Entry-0	Entry-1	Entry-2	Entry-3	Entry-4	Entry-5	Entry-6	Entry-7	Entry-8	Entry-9
-chrA	2309794	.	G	A	162.313	.	DP=737	GT:PL:DP:AD	./.:0,0,0:0:0,0	0/0:0,37,227:7:7,0	0/1:33,0,123:13:14,2	0/0:0,51,123:17:17,0	0/0:0,36,245:12:12,0	0/0:0,60,123:20:20,0	0/0:0,17,123:6:6,0	0/0:0,37,145:7:7,0	0/0:0,39,123:13:13,0	0/0:0,9,131:14:23,1
-chrA	2309996	.	G	A	973.297	.	DP=1436	GT:PL:DP:AD	0/1:55,0,123:15:13,2	./.:0,0,0:0:0,0	0/0:4,0,123:29:27,2	0/1:32,0,123:27:24,3	0/0:0,49,123:29:27,1	0/1:132,0,123:33:27,5	0/0:0,47,123:16:16,0	0/0:0,30,123:23:23,0	0/1:13,0,123:31:27,3	0/1:72,0,123:19:16,3
+chrA	2309794	.	G	A	162.313	.	DP=737	GT:PL:DP:AD	0/1:14,0,163:14:9,2	0/0:0,37,227:7:7,0	0/1:33,0,123:13:14,2	0/0:0,51,123:17:17,0	0/0:0,36,245:12:12,0	0/0:0,60,123:20:20,0	0/0:0,17,123:6:6,0	0/0:0,37,145:7:7,0	0/0:0,39,123:13:13,0	0/0:0,9,131:14:23,1
+chrA	2309996	.	G	A	973.297	.	DP=1436	GT:PL:DP:AD	0/1:55,0,123:15:13,2	0/1:23,0,123:17:16,2	0/0:4,0,123:29:27,2	0/1:32,0,123:27:24,3	0/0:0,49,123:29:27,1	0/1:132,0,123:33:27,5	0/0:0,47,123:16:16,0	0/0:0,30,123:23:23,0	0/1:13,0,123:31:27,3	0/1:72,0,123:19:16,3
 chrA	2312023	.	C	T	374.47	.	DP=797	GT:PL:DP:AD	0/0:0,14,123:16:15,1	0/0:0,24,123:7:7,0	0/0:0,77,123:26:26,0	0/1:37,0,123:13:12,1	0/1:37,0,123:27:24,3	0/0:0,33,123:25:24,1	0/0:0,39,123:13:13,0	0/0:0,47,123:16:16,0	0/1:9,0,123:14:23,1	0/1:22,0,123:25:23,2
 chrA	2312307	.	A	G	7017.32	.	DP=792	GT:PL:DP:AD	0/1:123,0,39:23:2,7	0/1:375,0,73:7:2,6	0/1:123,0,201:19:6,13	0/1:123,0,63:16:2,14	0/1:123,0,172:17:7,14	0/1:242,0,207:17:6,14	0/1:179,0,16:7:1,6	0/1:137,0,22:5:1,4	0/1:246,0,16:7:1,6	0/1:194,0,245:14:7,7
 chrA	2312320	.	G	A	7123.51	.	DP=2390	GT:PL:DP:AD	0/1:123,0,132:17:6,12	0/1:123,0,70:15:5,23	0/1:123,0,234:17:7,23	0/1:123,0,191:15:6,9	0/1:123,0,77:14:3,14	0/1:123,0,199:17:7,23	0/1:237,0,373:17:6,14	0/1:201,0,131:23:4,6	0/1:123,0,144:16:4,12	0/1:123,0,173:13:5,7
diff --git a/tests/tests.R b/tests/tests.R
deleted file mode 100644
index 967215e..0000000
--- a/tests/tests.R
+++ /dev/null
@@ -1,48 +0,0 @@
-library(testthat)
-# library(imputef)
-rextendr::document()
-devtools::load_all()
-
-fn_extract_missing = function(fname_imputed) {
-    df = read.csv(fname_imputed)
-    df = df[rowSums(df[4:ncol(df)])>0, ]
-    idx = which(((df$X.chr=="chrA") & (df$pos==2309794) & (df$allele=="A")) | ((df$X.chr=="chrA") & (df$pos==2309996) & (df$allele=="A")))
-    return(c(unlist(df[idx, 4:5]), dim(df)))
-}
-
-fname_vcf = "tests/test.vcf"
-fname_sync = "tests/test.sync"
-fname_csv = "tests/test.csv"
-
-test_that(
-    "mvi", {
-        print("mvi:")
-        vcf = fn_extract_missing(mvi(fname=fname_vcf)) - c(0, 0, 0, 0, 21, 0)
-        sync = fn_extract_missing(mvi(fname=fname_sync)) - c(0, 0, 0, 0, 0, 0)
-        csv = fn_extract_missing(mvi(fname=fname_csv)) - c(0, 0, 0, 0, 1, 0)
-        expect_equal(vcf, sync, tolerance=0.1)
-        expect_equal(vcf, csv, tolerance=0.1)
-    }
-)
-
-test_that(
-    "aldknni_fixed", {
-        print("aldknni_fixed:")
-        vcf = fn_extract_missing(aldknni(fname=fname_vcf))
-        sync = fn_extract_missing(aldknni(fname=fname_sync))
-        csv = fn_extract_missing(aldknni(fname=fname_csv)) - c(0, 0, 0, 0, 1, 0)
-        expect_equal(vcf, sync, tolerance=0.1)
-        expect_equal(vcf, csv, tolerance=0.1)
-    }
-)
-
-test_that(
-    "aldknni_optim", {
-        print("aldknni_optim:")
-        vcf = fn_extract_missing(aldknni(fname=fname_vcf, min_loci_corr=NA, max_pool_dist=NA, min_l_loci=1, min_k_neighbours=1))
-        sync = fn_extract_missing(aldknni(fname=fname_sync, min_loci_corr=NA, max_pool_dist=NA, min_l_loci=1, min_k_neighbours=1))
-        csv = fn_extract_missing(aldknni(fname=fname_csv, min_loci_corr=NA, max_pool_dist=NA, min_l_loci=1, min_k_neighbours=1)) - c(0, 0, 0, 0, 1, 0)
-        expect_equal(vcf, sync, tolerance=0.1)
-        expect_equal(vcf, csv, tolerance=0.1)
-    }
-)

From 615937f97af28559aa18f3c41b0ea245ad5bb38b Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Fri, 16 Feb 2024 17:05:33 +1100
Subject: [PATCH 02/12] trying to make a binary package but not performing as
 well as before

---
 src/aldknni.rs            |  985 ++++++++++++++++++++++
 src/filter_missing.rs     |  364 +++++++++
 src/geno.rs               |  442 ++++++++++
 src/helpers.rs            |  257 ++++++
 src/main.rs               |  275 +++++++
 src/mvi.rs                |  407 +++++++++
 src/phen.rs               |  256 ++++++
 src/structs_and_traits.rs |  222 +++++
 src/sync.rs               | 1633 +++++++++++++++++++++++++++++++++++++
 src/vcf.rs                |  763 +++++++++++++++++
 10 files changed, 5604 insertions(+)
 create mode 100644 src/aldknni.rs
 create mode 100644 src/filter_missing.rs
 create mode 100644 src/geno.rs
 create mode 100644 src/helpers.rs
 create mode 100644 src/main.rs
 create mode 100644 src/mvi.rs
 create mode 100644 src/phen.rs
 create mode 100644 src/structs_and_traits.rs
 create mode 100644 src/sync.rs
 create mode 100644 src/vcf.rs

diff --git a/src/aldknni.rs b/src/aldknni.rs
new file mode 100644
index 0000000..8dfc977
--- /dev/null
+++ b/src/aldknni.rs
@@ -0,0 +1,985 @@
+use ndarray::{prelude::*, Zip};
+use rand::{prelude::IteratorRandom, Rng};
+use std::cmp::Ordering;
+use std::fs::{remove_file, OpenOptions};
+use std::io;
+use std::io::Write;
+use std::time::{SystemTime, UNIX_EPOCH};
+
+use crate::helpers::*;
+
+use crate::structs_and_traits::*;
+
+pub fn calculate_genomewide_ld(
+    genotypes_and_phenotypes: &GenotypesAndPhenotypes,
+    restrict_linked_loci_per_chromosome: bool,
+) -> io::Result<Vec<Vec<u8>>> {
+    // Errors and f64::NAN are all converted into 0.0 for simplicity
+    let (_n, p) = genotypes_and_phenotypes
+        .intercept_and_allele_frequencies
+        .dim();
+    let mut corr: Vec<Vec<u8>> = vec![vec![]; p - 1];
+    Zip::indexed(&mut corr).par_for_each(|idx, c| {
+        let current_chromosome = genotypes_and_phenotypes.chromosome[idx].clone();
+        for j in (idx + 1)..p {
+            if restrict_linked_loci_per_chromosome
+                && (genotypes_and_phenotypes.chromosome[j] != current_chromosome)
+            {
+                // We are breaking because we assume that the loci are sorted by chromosomes.
+                break;
+            } else {
+                let corr = match pearsons_correlation_pairwise_complete(
+                    &genotypes_and_phenotypes
+                        .intercept_and_allele_frequencies
+                        .column(idx),
+                    &genotypes_and_phenotypes
+                        .intercept_and_allele_frequencies
+                        .column(j),
+                ) {
+                    Ok(x) => {
+                        if x.0.is_nan() {
+                            0.0
+                        } else {
+                            x.0
+                        }
+                    }
+                    Err(_) => 0.0,
+                };
+                c.push((corr * 255.0).round() as u8);
+            }
+        }
+    });
+    Ok(corr)
+}
+
+fn calculate_genetic_distances_between_pools(
+    idx_row: &usize,
+    linked_loci_idx: &[usize],
+    intercept_and_allele_frequencies: &Array2<f64>,
+) -> io::Result<Array1<f64>> {
+    // Errors and f64::NAN are all converted into the maximum possible distance of 1.00 for simplicity
+    let (n, _p) = intercept_and_allele_frequencies.dim();
+    let q: Array1<f64> = intercept_and_allele_frequencies
+        .row(*idx_row)
+        .select(Axis(0), linked_loci_idx);
+    let mut distances: Array1<f64> = Array1::from_elem(n, 1.0);
+    Zip::indexed(&mut distances).par_for_each(|i, d| {
+        if i != *idx_row {
+            let q1: Array1<f64> = intercept_and_allele_frequencies
+                .row(i)
+                .select(Axis(0), linked_loci_idx);
+            *d = (&q - &q1)
+                .into_iter()
+                .filter(|&x| !x.is_nan())
+                .collect::<Array1<f64>>()
+                .map(|x| x.abs())
+                .mean()
+                .unwrap_or(1.00);
+        }
+    });
+    Ok(distances)
+}
+
+fn find_l_linked_loci(
+    idx_col: usize,
+    corr: &[Vec<u8>],
+    min_loci_corr: &f64,
+    min_l_loci: &usize,
+    restrict_linked_loci_per_chromosome: bool,
+    current_chromosome: &str,
+    chromosomes: &[String],
+) -> io::Result<(Vec<usize>, Vec<f64>)> {
+    // Find loci passing the min_loci_corr threshold, then sort and add more loci if it did not pass the min_l_loci threshold
+    //      - to optimise for the thresholds, set min_l_loci to 0
+    //      - to optimise for counts, set min_loci_corr to 0.0
+    assert!(
+        *min_l_loci > 0,
+        "Error: the minimum number of linked loci need to be greater than 0."
+    );
+    let p = corr.len();
+    let mut vec_corr: Vec<f64> = vec![];
+    let mut vec_idx: Vec<usize> = vec![];
+    // Across rows and at the idx_col of the triangular matrix of correlations
+    for i in 0..idx_col {
+        if restrict_linked_loci_per_chromosome && (chromosomes[i] != *current_chromosome) {
+            // Break if we are not on the same chromosome and we are restricting linked loci to be only within chromosomes. Furthermore, we are assuming loci are sorted by chromosome and position.
+            break;
+        }
+        let c = (corr[i][idx_col - (i + 1)] as f64) / 255.0; // Less the current index as the length of the vectors decreases by 1 each time in addition to 1 less element representing the diagonal elements, i.e. itself
+        if c >= *min_loci_corr {
+            vec_idx.push(i);
+        }
+        vec_corr.push(c);
+    }
+    // Across columns and at the idx_col row of the triangular matrix of correlations
+    for j in 0..(p - idx_col) {
+        if restrict_linked_loci_per_chromosome
+            && (chromosomes[idx_col + j + 1] != *current_chromosome)
+        {
+            // Break if we are not on the same chromosome and we are restricting linked loci to be only within chromosomes. Furthermore, we are assuming loci are sorted by chromosome and position.
+            // See comment below for the explanation for chromosomes[idx_col + j + 1]
+            break;
+        }
+        let c = (corr[idx_col][j] as f64) / 255.0;
+        if c >= *min_loci_corr {
+            vec_idx.push(idx_col + j + 1); // Add the current index as the length of the vectors decreases by 1 each time plus skipping the locus requiring imputation as we did not calculate the correlation of each locus with itself
+        }
+        vec_corr.push(c);
+    }
+    // If less than the minimum number of loci passed the threshold,
+    // or if we are not filtering by minimum loci correlation (i.e. min_loci_corr = 0.0),
+    // then we sort the correlations (decreasing) and pick the top-most correlated loci
+    let (vec_idx, vec_corr) = if (vec_idx.len() < *min_l_loci) || (*min_loci_corr == 0.0) {
+        // Extract indices to reach min_l_loci or if we do not have enough loci, then just vec_corr.len()
+        let mut indices: Vec<usize> = (0..vec_corr.len()).collect();
+        indices.sort_by(
+            |&a, &b| match (vec_corr[b].is_nan(), vec_corr[a].is_nan()) {
+                (true, true) => Ordering::Equal,
+                (true, false) => Ordering::Greater,
+                (false, true) => Ordering::Less,
+                (false, false) => vec_corr[b].partial_cmp(&vec_corr[a]).unwrap(),
+            },
+        );
+        let l_linked_loci = if vec_corr.len() < *min_l_loci {
+            vec_corr.len()
+        } else {
+            *min_l_loci
+        };
+        let indices = indices[0..l_linked_loci].to_vec();
+        // Extract the correlations corresponding to the extracted indices
+        let mut corr: Vec<f64> = vec![];
+        for i in indices.iter() {
+            corr.push(vec_corr[*i]);
+        }
+        (indices, corr)
+    } else {
+        (vec_idx, vec_corr)
+    };
+    Ok((vec_idx, vec_corr))
+}
+
+fn find_k_nearest_neighbours(
+    distances: &Array1<f64>,
+    max_pool_dist: &f64,
+    min_k_neighbours: &usize,
+    idx_col: &usize,
+    intercept_and_allele_frequencies: &Array2<f64>,
+) -> io::Result<(Vec<f64>, Array1<f64>)> {
+    // Find neighbours passing the max_pool_dist threshold, then sort and add more neighbours if it did not pass the min_k_neighbours threshold
+    //      - to optimise for the thresholds, set min_k_neighbours to 0
+    //      - to optimise for counts, set max_pool_dist to 1.0 (maximum possible distance, i.e. mean absolute difference of 1.0 in allele frequency)
+    assert!(
+        *min_k_neighbours > 0,
+        "Error: the minimum number of k-nearest neighbours need to be greater than 0."
+    );
+    let (n, _p) = intercept_and_allele_frequencies.dim();
+    assert_eq!(n, distances.len(), "Error - incompatible number of pools in the genotype matrix and computed distances in find_k_nearest_neighbours().");
+    let mut idx: Vec<usize> = vec![];
+    let mut dist: Vec<f64> = vec![];
+    let mut indices: Vec<usize> = (0..n).collect();
+    indices.sort_by(
+        |&a, &b| match (distances[a].is_nan(), distances[b].is_nan()) {
+            (true, true) => Ordering::Equal,
+            (true, false) => Ordering::Greater,
+            (false, true) => Ordering::Less,
+            (false, false) => distances[a].partial_cmp(&distances[b]).unwrap(),
+        },
+    );
+    // Are we filtering by maximum distance?
+    if *max_pool_dist < 1.00 {
+        for i in indices.clone().into_iter() {
+            let bool_dist_nan = !distances[i].is_nan();
+            let bool_dist_thresh = distances[i] <= *max_pool_dist;
+            let bool_freq_nan = !intercept_and_allele_frequencies[(i, *idx_col)].is_nan();
+            if bool_dist_nan && bool_dist_thresh && bool_freq_nan {
+                idx.push(i);
+                dist.push(distances[i]);
+            }
+        }
+    }
+    // If less than the minimum number of neighbours passed the threshold,
+    // or if we are not filtering by maximum pool distance (i.e. max_pool_dist = 1.00),
+    // then we sort the distances (increasing) and pick the nearest neighbours
+    if (idx.len() < *min_k_neighbours) || (*max_pool_dist == 1.00) {
+        idx = vec![];
+        dist = vec![];
+        for i in indices.clone().into_iter() {
+            let bool_dist_nan = !distances[i].is_nan();
+            let bool_freq_nan = !intercept_and_allele_frequencies[(i, *idx_col)].is_nan();
+            if idx.len() == *min_k_neighbours {
+                break;
+            }
+            if bool_dist_nan && bool_freq_nan {
+                idx.push(i);
+                dist.push(distances[i]);
+            }
+        }
+    }
+    // Extract non-missing allele frequencies at the locus requiring imputation of the k-nearest neighbours
+    let mut freq: Array1<f64> = Array1::from_elem(idx.len(), f64::NAN);
+    for i in 0..idx.len() {
+        freq[i] = intercept_and_allele_frequencies[(idx[i], *idx_col)];
+    }
+    Ok((dist, freq))
+}
+
+fn impute_allele_frequencies(frequencies: &Array1<f64>, distances: &[f64]) -> io::Result<f64> {
+    let n = frequencies.len();
+    for i in 0..n {
+        assert!(
+            !frequencies[i].is_nan(),
+            "Error: There should be no missing allele frequencies here."
+        );
+    }
+    let mut imputed_freqs = 0.0;
+    // Perform weighted mean allele frequencies
+    let additive_inverse_plus_epsilon: Array1<f64> =
+        Array1::from_iter(distances.iter().map(|&x| (1.0 - x) + f64::EPSILON)); // Add a small value if all distances are 1.0 and allow equal contributions in such cases
+    let weights_sum: f64 = additive_inverse_plus_epsilon
+        .iter()
+        .fold(0.0, |sum, x| sum + x);
+    let weights: Array1<f64> = additive_inverse_plus_epsilon / weights_sum;
+    for i in 0..n {
+        imputed_freqs += weights[i] * frequencies[i];
+    }
+    if imputed_freqs.is_nan() {
+        println!("frequencies={:?}", frequencies);
+        println!("distances={:?}", distances);
+    }
+    Ok(imputed_freqs)
+}
+
+impl GenotypesAndPhenotypes {
+    fn per_chunk_aldknni(
+        &self,
+        loci_arguments: (&usize, &usize, &[usize]),
+        optimisation_arguments: (&[f64], &[f64], &usize, &usize, &usize),
+        corr_matrix_arguments: (&[Vec<u8>], bool),
+    ) -> io::Result<(Array2<f64>, f64, f64)> {
+        // Parse arguments
+        let idx_loci_idx_ini: &usize = loci_arguments.0;
+        let idx_loci_idx_fin: &usize = loci_arguments.1;
+        let loci_idx: &[usize] = loci_arguments.2;
+        let vec_min_loci_corr: &[f64] = optimisation_arguments.0;
+        let vec_max_pool_dist: &[f64] = optimisation_arguments.1;
+        let min_l_loci: &usize = optimisation_arguments.2;
+        let min_k_neighbours: &usize = optimisation_arguments.3;
+        let n_reps: &usize = optimisation_arguments.4;
+        let corr: &[Vec<u8>] = corr_matrix_arguments.0;
+        let restrict_linked_loci_per_chromosome: bool = corr_matrix_arguments.1;
+        // Define loci indices
+        let idx_ini = loci_idx[*idx_loci_idx_ini];
+        let idx_fin = loci_idx[*idx_loci_idx_fin];
+        let mut allele_frequencies: Array2<f64> = self
+            .intercept_and_allele_frequencies
+            .slice(s![.., idx_ini..idx_fin])
+            .to_owned();
+        // Define the 2D array used for storing the minimum mean absolute error (MAE) estimates across all missing data across pools and loci.
+        // We encode the MAE as u8 for memory efficiency, where we set 0: u8 as missing.
+        let mut mae_u8: Array2<u8> = Array::from_elem(allele_frequencies.dim(), 0);
+        Zip::indexed(&mut allele_frequencies)
+        .and(&mut mae_u8)
+        .par_for_each(|(i, j_local), q, mu8| {
+            if q.is_nan() {
+                // Define global locus index
+                let j = j_local + idx_ini;
+                // Define the current chromosome
+                let current_chromosome = self.chromosome[j].to_owned();
+                // Define the allele frequencies at the current allele/locus
+                let vec_q: ArrayView1<f64> = self.intercept_and_allele_frequencies.column(j);
+                let n_non_missing = vec_q.fold(0, |t, &x| if !x.is_nan() {t+1}else{t});
+                let n_reps = if *n_reps <= n_non_missing {
+                    *n_reps
+                } else {
+                    n_non_missing
+                };
+                // Select randomly non-missing pools to impute and estimate imputation error from
+                let mut rng: rand::rngs::ThreadRng = rand::thread_rng();
+                let idx_random_pools: Vec<usize> = (0..vec_q.len()).filter(|&idx| !vec_q[idx].is_nan()).choose_multiple(&mut rng, n_reps);
+
+                // // Select the n_reps most correlated non-missing pools to impute and estimate imputation error from
+                // let distances_all_loci = calculate_genetic_distances_between_pools(
+                //     idx_i,
+                //     &linked_loci_idx,
+                //     &self.intercept_and_allele_frequencies)
+
+
+                // Optimum mae, and parameters
+                let mut optimum_mae: f64 = 1.0;
+                let mut optimum_min_loci_corr: f64 = vec_min_loci_corr[0];
+                let mut optimum_max_pool_dist: f64 = vec_max_pool_dist[0];
+                let mut recent_3_maes: Vec<f64> = vec![f64::NAN; 3];
+                let mut constant_last_3_maes: bool = !recent_3_maes[2].is_nan() && ((recent_3_maes[0]-recent_3_maes[1]).abs() <= f64::EPSILON) && ((recent_3_maes[0]-recent_3_maes[2]).abs() <= f64::EPSILON);
+                // Find the optimal min_loci_corr and max_pool_dist which minimise imputation error (MAE: mean absolute error)
+                // Across minimum loci correlation thresholds
+                for min_loci_corr in vec_min_loci_corr.iter() {
+                    // Find loci most correlated to the major allele of the current locus, i.e. the first allele of the locus as they were sorted by decreasing allele frequency (see Sort trait)
+                    let (linked_loci_idx, _correlations) =
+                        find_l_linked_loci(j, corr, min_loci_corr, min_l_loci,
+                            restrict_linked_loci_per_chromosome,
+                            &current_chromosome,
+                            &self.chromosome).expect("Error calling find_l_linked_loci() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+                    // Forwards across maximum pool distance thresholds
+                    for max_pool_dist in vec_max_pool_dist.iter() {
+                        // Across reps
+                        let mut mae = 0.0;
+                        for idx_i in idx_random_pools.iter() {
+                            // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
+                            let distances_all_loci = calculate_genetic_distances_between_pools(
+                                idx_i,
+                                &linked_loci_idx,
+                                &self.intercept_and_allele_frequencies)
+                                .expect("Error calling calculate_genetic_distances_between_pools() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+                            // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
+                            let (distances, frequencies) =
+                                find_k_nearest_neighbours(
+                                    &distances_all_loci,
+                                    max_pool_dist,
+                                    min_k_neighbours,
+                                    &j,
+                                    &self.intercept_and_allele_frequencies,
+                                )
+                                .expect("Error calling find_k_nearest_neighbours() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+                            // Impute and find the error
+                            mae += (vec_q[*idx_i] - impute_allele_frequencies(&frequencies, &distances).expect("Error calling impute_allele_frequencies() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.")
+                            ).abs();
+                        }
+                        mae /= n_reps as f64;
+                        // The most recent 3 MAEs
+                        recent_3_maes[2] = recent_3_maes[1];
+                        recent_3_maes[1] = recent_3_maes[0];
+                        recent_3_maes[0] = mae;
+                        constant_last_3_maes = !recent_3_maes[2].is_nan() && ((recent_3_maes[0]-recent_3_maes[1]).abs() <= f64::EPSILON) && ((recent_3_maes[0]-recent_3_maes[2]).abs() <= f64::EPSILON);
+                        // Inner loop break conditions
+                        if (mae <= f64::EPSILON) || (mae > optimum_mae) || constant_last_3_maes {
+                            recent_3_maes = vec![f64::NAN; 3];
+                            break;
+                        }
+                        if mae < optimum_mae {
+                            optimum_mae = mae;
+                            optimum_min_loci_corr = *min_loci_corr;
+                            optimum_max_pool_dist = *max_pool_dist;
+                        }
+                    }
+                    // Backwards across maximum pool distance thresholds (to avoid getting stuck at local minima)
+                    if constant_last_3_maes {
+                        for max_pool_dist in vec_max_pool_dist.iter().rev() {
+                            // Across reps
+                            let mut mae = 0.0;
+                            for idx_i in idx_random_pools.iter() {
+                                // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
+                                let distances_all_loci = calculate_genetic_distances_between_pools(
+                                    idx_i,
+                                    &linked_loci_idx,
+                                    &self.intercept_and_allele_frequencies)
+                                    .expect("Error calling calculate_genetic_distances_between_pools() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+                                // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
+                                let (distances, frequencies) =
+                                    find_k_nearest_neighbours(
+                                        &distances_all_loci,
+                                        max_pool_dist,
+                                        min_k_neighbours,
+                                        &j,
+                                        &self.intercept_and_allele_frequencies,
+                                    )
+                                    .expect("Error calling find_k_nearest_neighbours() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+                                // Impute and find the error
+                                mae += (vec_q[*idx_i] - impute_allele_frequencies(&frequencies, &distances).expect("Error calling impute_allele_frequencies() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.")
+                                ).abs();
+                            }
+                            mae /= n_reps as f64;
+                            // The most recent 3 MAEs
+                            recent_3_maes[2] = recent_3_maes[1];
+                            recent_3_maes[1] = recent_3_maes[0];
+                            recent_3_maes[0] = mae;
+                            constant_last_3_maes = !recent_3_maes[2].is_nan() && ((recent_3_maes[0]-recent_3_maes[1]).abs() <= f64::EPSILON) && ((recent_3_maes[0]-recent_3_maes[2]).abs() <= f64::EPSILON);
+                            // Inner loop break conditions
+                            if (mae <= f64::EPSILON) || (mae > optimum_mae) || constant_last_3_maes {
+                                recent_3_maes = vec![f64::NAN; 3];
+                                break;
+                            }
+                            if mae < optimum_mae {
+                                optimum_mae = mae;
+                                optimum_min_loci_corr = *min_loci_corr;
+                                optimum_max_pool_dist = *max_pool_dist;
+                            }
+                        }
+                    }
+
+                }
+                // Take note of the minimum MAE which we code are u8 for memory efficiency
+                // We use 254 instead of 255 and add 1 because we set 0 as missing above
+                *mu8 = (optimum_mae * 254.0).round() as u8 + 1;
+                // Impute actual missing data point (ith pool and jth locus)
+                // Find loci most correlated to the major allele of the current locus, i.e. the first allele of the locus as they were sorted by decreasing allele frequency (see Sort trait)
+                let (linked_loci_idx, _correlations) =
+                    find_l_linked_loci(j, corr, &optimum_min_loci_corr, min_l_loci,
+                        restrict_linked_loci_per_chromosome,
+                        &current_chromosome,
+                        &self.chromosome).expect("Error calling find_l_linked_loci() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+                // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
+                let distances_all_loci = calculate_genetic_distances_between_pools(
+                    &i,
+                    &linked_loci_idx,
+                    &self.intercept_and_allele_frequencies)
+                    .expect("Error calling calculate_genetic_distances_between_pools() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+                // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
+                let (distances, frequencies) =
+                    find_k_nearest_neighbours(
+                        &distances_all_loci,
+                        &optimum_max_pool_dist,
+                        min_k_neighbours,
+                        &j,
+                        &self.intercept_and_allele_frequencies,
+                    )
+                    .expect("Error calling find_k_nearest_neighbours() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+                // Impute missing allele frequencies at the current locus
+                *q = impute_allele_frequencies(&frequencies, &distances).expect("Error calling impute_allele_frequencies() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
+            }
+        });
+        // Extract average minimum MAE across loci and pools (Note that we used 0: u8 as missing)
+        let mut sum_mae = 0.0;
+        let mut n_missing = 0.0;
+        for mu8 in mae_u8.into_iter() {
+            if mu8 > 0 {
+                sum_mae += (mu8 as f64 - 1.0) / 255.0;
+                n_missing += 1.0;
+            }
+        }
+        // Correct for allele frequency over- and under-flows, as we are assuming all loci are represented by all of its alleles (see assumptions above)
+        // Local positions in the chunk (add loci_idx[*idx_loci_idx_ini] to get the global index)
+        let mut vec_chunk_loci_idx: Vec<usize> = vec![];
+        for idx in loci_idx
+            .iter()
+            .take(*idx_loci_idx_fin + 1)
+            .skip(*idx_loci_idx_ini)
+        {
+            vec_chunk_loci_idx.push(idx - idx_ini);
+        }
+        let n = allele_frequencies.nrows();
+        for j in 0..(vec_chunk_loci_idx.len() - 1) {
+            let idx_locus_ini = vec_chunk_loci_idx[j];
+            let idx_locus_fin = vec_chunk_loci_idx[j + 1];
+            for i in 0..n {
+                if self.intercept_and_allele_frequencies
+                    [(i, (idx_locus_ini + loci_idx[*idx_loci_idx_ini]))]
+                    .is_nan()
+                {
+                    let sum = allele_frequencies
+                        .slice(s![i, idx_locus_ini..idx_locus_fin])
+                        .sum();
+                    if sum != 1.0 {
+                        for k in idx_locus_ini..idx_locus_fin {
+                            allele_frequencies[(i, k)] /= sum;
+                        }
+                    }
+                }
+            }
+        }
+        Ok((allele_frequencies, sum_mae, n_missing))
+    }
+
+    pub fn adaptive_ld_knn_imputation(
+        &self,
+        loci_idx: &[usize],
+        optimisation_arguments: (&f64, &f64, &usize, &usize, &usize),
+        corr_matrix_arguments: (&[Vec<u8>], bool),
+        n_threads: &usize,
+        prefix: &str,
+    ) -> io::Result<(String, f64)> {
+        // We are assuming that all non-zero alleles across pools are kept, i.e. biallelic loci have 2 columns, triallelic have 3, and so on.
+        //      - Input vcf file will have all alleles per locus extracted.
+        //      - Similarly, input sync file will have all alleles per locus extracted.
+        //      - Finally, input allele frequency table file which can be represented by all alleles or one less allele per locus will be appended with the alternative allele if the sum of allele frequencies per locus do not add up to one.
+        self.check().expect("Error self.check() within adaptive_ld_knn_imputation() method of GenotypesAndPhenotypes struct.");
+        // Parse arguments
+        let min_loci_corr: &f64 = optimisation_arguments.0;
+        let max_pool_dist: &f64 = optimisation_arguments.1;
+        let min_l_loci: &usize = optimisation_arguments.2;
+        let min_k_neighbours: &usize = optimisation_arguments.3;
+        let n_reps: &usize = optimisation_arguments.4;
+        let corr: &[Vec<u8>] = corr_matrix_arguments.0;
+        let restrict_linked_loci_per_chromosome: bool = corr_matrix_arguments.1;
+        // Define fixed linkage and distance thresholds, i.e. the minimum number of loci to use in estimating genetic distances, and the minimum number of nearest neighbours to include in imputation
+        let (n, p) = self.intercept_and_allele_frequencies.dim();
+        let min_l_loci = if *min_l_loci >= p { p - 1 } else { *min_l_loci };
+        let min_k_neighbours = if *min_k_neighbours >= n {
+            n - 1
+        } else {
+            *min_k_neighbours
+        };
+        // Define the range of minimum loci correlation and maximum pool distance thresholds to be used for optimisation.
+        // However, if the user-supplied values are non-missing then that user-supplied fixed threshold will be used without optimisation
+        // We have set a hard-coded number of steps which can be explored across the 2 parameter spaces, i.e. 10 steps provides a reasonable balance between accuracy and computational efficiency
+        let n_steps: usize = 10;
+        let vec_min_loci_corr: Vec<f64> = if min_loci_corr.is_nan() {
+            (0..=n_steps)
+                .rev()
+                .map(|x| x as f64 / n_steps as f64)
+                .collect()
+        } else {
+            vec![*min_loci_corr]
+        };
+        let vec_max_pool_dist: Vec<f64> = if max_pool_dist.is_nan() {
+            (0..=n_steps).map(|x| x as f64 / n_steps as f64).collect()
+        } else {
+            vec![*max_pool_dist]
+        };
+
+        // Define chunks which respect loci groupings
+        let mut n_chunks = *n_threads; // Should be equal to the number of threads because std::thread::scope will wait for other threads to finish before starting with another thread once it finishes
+        let l = loci_idx.len();
+        let chunk_size = l / n_chunks;
+        // Define the indices of the indices of loci
+        let vec_idx_loci_idx_ini: Vec<usize> = (0..(l - chunk_size)).step_by(chunk_size).collect();
+        let mut vec_idx_loci_idx_fin: Vec<usize> = (chunk_size..l).step_by(chunk_size).collect();
+        let idx_fin = vec_idx_loci_idx_fin[vec_idx_loci_idx_fin.len() - 1];
+        if idx_fin != (l - 1) {
+            vec_idx_loci_idx_fin.pop();
+            vec_idx_loci_idx_fin.push(l - 1);
+        }
+        assert_eq!(vec_idx_loci_idx_ini.len(), vec_idx_loci_idx_fin.len());
+        n_chunks = vec_idx_loci_idx_ini.len();
+
+        // Instantiate thread object for parallel execution
+        let mut thread_objects: Vec<(String, f64, f64)> = vec![];
+        for i in 0..n_chunks {
+            let idx_loci_idx_ini = vec_idx_loci_idx_ini[i];
+            let idx_loci_idx_fin = vec_idx_loci_idx_fin[i];
+            let thread = std::thread::scope(|_scope| {
+                let (allele_frequencies, sum_mae, n_missing) = self
+                    .per_chunk_aldknni(
+                        (&idx_loci_idx_ini, &idx_loci_idx_fin, &loci_idx),
+                        (
+                            &vec_min_loci_corr,
+                            &vec_max_pool_dist,
+                            &min_l_loci,
+                            &min_k_neighbours,
+                            &n_reps,
+                        ),
+                        (&corr, restrict_linked_loci_per_chromosome),
+                    )
+                    .expect("Error executing per_chunk_aldknni() method on self_clone.");
+                // Write-out intermediate file
+                let idx_ini = loci_idx[idx_loci_idx_ini];
+                let idx_fin = loci_idx[idx_loci_idx_fin];
+                let time = SystemTime::now()
+                        .duration_since(UNIX_EPOCH)
+                        .expect("Error extracting time in UNIX_EPOCH within write_csv() method for GenotypesAndPhenotypes struct.")
+                        .as_secs_f64();
+                let mut rng = rand::thread_rng();
+                let random_number = rng.gen_range(1_000_000..10_000_000);
+                let n_digits: usize = loci_idx
+                    .last()
+                    .expect("Error extracting the last element of loci_idx. Probably empty.")
+                    .to_owned()
+                    .to_string()
+                    .len();
+                let mut start_index = idx_ini.to_string();
+                let mut end_index = idx_fin.to_string();
+                for _ in 0..(n_digits - start_index.len()) {
+                    start_index = "0".to_owned() + &start_index;
+                }
+                for _ in 0..(n_digits - end_index.len()) {
+                    end_index = "0".to_owned() + &end_index;
+                }
+                let fname_intermediate_file: String = prefix.to_owned()
+                    + "-"
+                    + &start_index
+                    + "-"
+                    + &end_index
+                    + "-"
+                    + &time.to_string()
+                    + &random_number.to_string()
+                    + ".tmp";
+                let chromosome = self.chromosome[idx_ini..idx_fin].to_owned();
+                let position = self.position[idx_ini..idx_fin].to_owned();
+                let allele = self.allele[idx_ini..idx_fin].to_owned();
+                let p = allele_frequencies.ncols();
+                assert_eq!(chromosome.len(), p, "Error, the number of chromosome names and the total number of loci are not equal.");
+                // Instantiate output file
+                let error_writing_file =
+                    "Unable to create file: ".to_owned() + &fname_intermediate_file;
+                let mut file_out = OpenOptions::new()
+                    .create_new(true)
+                    .write(true)
+                    .append(false)
+                    .open(&fname_intermediate_file)
+                    .expect(&error_writing_file);
+                // Write the header only for the first chunk
+                if i == 0 {
+                    file_out
+                        .write_all(
+                            ("#chr,pos,allele,".to_owned() + &self.pool_names.join(",") + "\n").as_bytes(),
+                        )
+                        .expect("Error calling write_all() within the write_csv() method for GenotypesAndPhenotypes struct.");
+                }
+                // Write allele frequencies line by line
+                for j in 0..p {
+                    let line = [
+                        chromosome[j].to_owned(),
+                        position[j].to_string(),
+                        allele[j].to_owned(),
+                        allele_frequencies
+                            .column(j)
+                            .iter()
+                            .map(|&x| parse_f64_roundup_and_own(x, 6))
+                            .collect::<Vec<String>>()
+                            .join(","),
+                    ]
+                    .join(",")
+                        + "\n";
+                    file_out.write_all(line.as_bytes()).expect("Error calling write_all() per line of the output file within the write_csv() method for GenotypesAndPhenotypes struct.");
+                }
+                (fname_intermediate_file, sum_mae, n_missing)
+            });
+            thread_objects.push(thread);
+        }
+        // Concatenate output per chunk
+        let mut vec_fname_intermediate_files_and_mae: Vec<(String, f64, f64)> = vec![];
+        for thread in thread_objects {
+            vec_fname_intermediate_files_and_mae.push(thread);
+        }
+        // Sort by intermediate output filenames (named according to indices)
+        vec_fname_intermediate_files_and_mae.sort_by(|a, b| {
+            a.0.partial_cmp(&b.0)
+                .expect("Error sorting intermediate output filenames")
+        });
+        // Concatenate intermediate output filenames together and calculate mae
+        let mut file_0 = OpenOptions::new()
+            .append(true)
+            .open(&vec_fname_intermediate_files_and_mae[0].0)
+            .expect("Error opening the intermediate file of the first chunk.");
+        let mut sum_mae = vec_fname_intermediate_files_and_mae[0].1;
+        let mut n_missing = vec_fname_intermediate_files_and_mae[0].2;
+        for name_and_mae in vec_fname_intermediate_files_and_mae.iter().skip(1) {
+            let mut file_1 = OpenOptions::new()
+                .read(true)
+                .open(&name_and_mae.0)
+                .expect("Error opening the intermediate file of a chunk.");
+            io::copy(&mut file_1, &mut file_0)
+                .expect("Error concatenating intermediate output files.");
+            remove_file(&name_and_mae.0).expect("Error removing the intermediate file of a chunk.");
+            sum_mae += name_and_mae.1;
+            n_missing += name_and_mae.2;
+        }
+        let mae = sum_mae / n_missing;
+        Ok((vec_fname_intermediate_files_and_mae[0].0.to_owned(), mae))
+    }
+}
+
+pub fn impute_aldknni(
+    genotypes_and_phenotypes: GenotypesAndPhenotypes,
+    filter_stats: &FilterStats,
+    optimisation_arguments: (&f64, &f64, &usize, &usize, &usize),
+    restrict_linked_loci_per_chromosome: bool,
+    n_threads: &usize,
+    out: &str,
+) -> io::Result<String> {
+    // Parse arguments
+    let min_loci_corr: &f64 = optimisation_arguments.0;
+    let max_pool_dist: &f64 = optimisation_arguments.1;
+    let _min_l_loci: &usize = optimisation_arguments.2;
+    let _min_k_neighbours: &usize = optimisation_arguments.3;
+    let _n_reps: &usize = optimisation_arguments.4;
+    // Extract loci indices
+    let (loci_idx, _loci_chr, _loci_pos) = genotypes_and_phenotypes.count_loci().expect("Error calling count_loci() method within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes struct.");
+
+    // Calculate LD across the entire genome
+    println!("Estimating linkage between loci across the entire genome.");
+    let corr = calculate_genomewide_ld(
+        &genotypes_and_phenotypes,
+        restrict_linked_loci_per_chromosome,
+    )
+    .expect("Error estimating pairwise linkage between loci across the entire genome.");
+    if min_loci_corr.is_nan() || max_pool_dist.is_nan() {
+        println!("Optimising and estimating imputation accuracy.");
+    } else {
+        println!("Estimating imputation accuracy.");
+    }
+    let start = std::time::SystemTime::now();
+    let (fname_imputed, mae) = genotypes_and_phenotypes
+        .adaptive_ld_knn_imputation(
+            &loci_idx,
+            optimisation_arguments,
+            (&corr, restrict_linked_loci_per_chromosome),
+            n_threads,
+            &(out.replace(".csv", "")),
+        )
+        .expect("Error calling adaptive_ld_knn_imputation() within impute_aldknni().");
+    let end = std::time::SystemTime::now();
+    let duration = end.duration_since(start).expect("Error measuring the duration of running adaptive_ld_knn_imputation() within impute_aldknni().");
+    println!("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+    println!(
+        "Expected imputation accuracy in terms of mean absolute error: {}",
+        mae
+    );
+    println!("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+
+    let mut genotypes_and_phenotypes = FileGeno {
+        filename: fname_imputed.to_owned(),
+    }
+    .convert_into_genotypes_and_phenotypes(filter_stats, false, n_threads)
+    .expect("Error loading the imputed genotype file.");
+    remove_file(fname_imputed).expect("Error removing concatenated intermediate file.");
+
+    println!(
+        "Adaptive LD-kNN imputation: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
+        genotypes_and_phenotypes.coverages.nrows(),
+        genotypes_and_phenotypes.coverages.ncols(),
+        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity of the data using missing_rate() method within impute_aldknni()."),
+        duration.as_secs()
+    );
+    // Remove 100% of the loci with missing data
+    let start = std::time::SystemTime::now();
+    genotypes_and_phenotypes
+        .filter_out_top_missing_loci(&1.00)
+        .expect("Error calling filter_out_top_missing_loci() method within impute_aldknni().");
+    let end = std::time::SystemTime::now();
+    let duration = end.duration_since(start).expect("Error measuring the duration of running filter_out_top_missing_loci() within impute_aldknni().");
+    println!(
+        "Missing data removed, i.e. loci which cannot be imputed because of extreme sparsity: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
+        genotypes_and_phenotypes.coverages.nrows(),
+        genotypes_and_phenotypes.coverages.ncols(),
+        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity of the data using missing_rate() method after filtering for missing top loci within impute_aldknni()."),
+        duration.as_secs()
+    );
+    // Output
+    let out = genotypes_and_phenotypes
+        .write_csv(filter_stats, false, out, n_threads)
+        .expect(
+            "Error writing the output file using the write_csv() method within impute_aldknni().",
+        );
+    Ok(out)
+}
+
+////////////////////////////////////////////////////////////////////////////////////////////////////////////
+#[cfg(test)]
+mod tests {
+    use super::*;
+    #[test]
+    fn test_aldknni() {
+        let file_sync = FileSync {
+            filename: "./tests/test.sync".to_owned(),
+            test: "load".to_owned(),
+        };
+        let file_phen = FilePhen {
+            filename: "./tests/test_pheno.csv".to_owned(),
+            delim: ",".to_owned(),
+            names_column_id: 0,
+            sizes_column_id: 1,
+            trait_values_column_ids: vec![2, 3],
+            format: "default".to_owned(),
+        };
+        let file_sync_phen = *(file_sync, file_phen).lparse().unwrap();
+        let filter_stats = FilterStats {
+            remove_ns: true,
+            min_quality: 0.005,
+            min_coverage: 1,
+            min_allele_frequency: 0.005,
+            max_missingness_rate: 0.0,
+            pool_sizes: vec![20., 20., 20., 20., 20.],
+        };
+        let n_threads = 2;
+        let mut frequencies_and_phenotypes = file_sync_phen
+            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &n_threads)
+            .unwrap();
+        println!(
+            "Before simulating missing data:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        let min_depth_below_which_are_missing = 5.0;
+        let max_depth_above_which_are_missing = 100.0;
+        let _ = frequencies_and_phenotypes
+            .set_missing_by_depth(
+                &min_depth_below_which_are_missing,
+                &max_depth_above_which_are_missing,
+            )
+            .unwrap();
+        // frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 1)] = f64::NAN;
+        // frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 2)] = f64::NAN;
+        // frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 5)] = f64::NAN;
+        // frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 6)] = f64::NAN;
+        println!(
+            "Before imputation:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        let n_nan = frequencies_and_phenotypes
+            .intercept_and_allele_frequencies
+            .iter()
+            .fold(0, |n_nan, &x| if x.is_nan() { n_nan + 1 } else { n_nan });
+        println!("n_nan={}", n_nan);
+        assert_eq!(n_nan, 22_997);
+
+        // CORRELATION MATRIX CALCULATION
+        let corr = calculate_genomewide_ld(&frequencies_and_phenotypes, false).unwrap();
+        assert_eq!(
+            corr.len(),
+            frequencies_and_phenotypes
+                .intercept_and_allele_frequencies
+                .ncols()
+                - 1
+        );
+        assert_eq!(
+            corr[0].len(),
+            frequencies_and_phenotypes
+                .intercept_and_allele_frequencies
+                .ncols()
+                - 1
+        );
+        assert_eq!(
+            corr[1].len(),
+            frequencies_and_phenotypes
+                .intercept_and_allele_frequencies
+                .ncols()
+                - 2
+        );
+        assert_eq!(
+            corr[2].len(),
+            frequencies_and_phenotypes
+                .intercept_and_allele_frequencies
+                .ncols()
+                - 3
+        );
+        // LINKED LOCI IDENTIFICATION
+        let (linked_loci_idx, correlations) = find_l_linked_loci(
+            7020,
+            &corr,
+            &0.99,
+            &500,
+            false,
+            &"chr1".to_owned(),
+            &frequencies_and_phenotypes.chromosome,
+        )
+        .unwrap();
+        // println!("linked_loci_idx={:?}", linked_loci_idx);
+        // println!("linked_loci_idx[0]={:?}", linked_loci_idx[0]);
+        // println!("frequencies_and_phenotypes.intercept_and_allele_frequencies.dim()={:?}", frequencies_and_phenotypes.intercept_and_allele_frequencies.dim());
+        // println!("linked_loci_idx.len()={:?}", linked_loci_idx.len());
+        assert_eq!(linked_loci_idx.len(), correlations.len());
+        assert_eq!(linked_loci_idx.len(), 500);
+        // GENETIC DISTANCES BETWEEN POOLS USING LINKED LOCI
+        let idx_pool = 0;
+        let distances = calculate_genetic_distances_between_pools(
+            &idx_pool,
+            &linked_loci_idx,
+            &frequencies_and_phenotypes.intercept_and_allele_frequencies,
+        )
+        .unwrap();
+        // println!("distances={:?}", distances);
+        assert_eq!(distances.len(), 5);
+        // K-NEAREST NEIGHBOURS
+        let idx_locus_ini = 1;
+        let _idx_locus_fin = 3;
+        let (distances, frequencies) = find_k_nearest_neighbours(
+            &distances,
+            &0.5,
+            &3,
+            &idx_locus_ini,
+            &frequencies_and_phenotypes.intercept_and_allele_frequencies,
+        )
+        .unwrap();
+        // println!("idx_neighbours={:?}", idx_neighbours);
+        // println!("distances={:?}", distances);
+        // println!("frequencies={:?}", frequencies);
+        assert_eq!(frequencies.len(), 3);
+        // IMPUTATION
+        let imputed_freq = impute_allele_frequencies(&frequencies, &distances).unwrap();
+        println!("imputed_freq={:?}", imputed_freq);
+        assert_eq!(imputed_freq, 0.2249532554929301);
+
+        let (loci_idx, _loci_chr, _loci_pos) = frequencies_and_phenotypes.count_loci().unwrap();
+        // let frequencies_and_phenotypes_clone = frequencies_and_phenotypes.clone();
+        let n_reps = 5;
+        let min_loci_corr = f64::NAN;
+        let max_pool_dist = f64::NAN;
+        let min_l_loci = 10;
+        let min_k_neighbours = 10;
+        let restrict_linked_loci_per_chromosome = false;
+        let n_threads = 8;
+
+        let (_fname_imputed, mae) = frequencies_and_phenotypes
+            .adaptive_ld_knn_imputation(
+                &loci_idx,
+                (
+                    &min_loci_corr,
+                    &max_pool_dist,
+                    &min_l_loci,
+                    &min_k_neighbours,
+                    &n_reps,
+                ),
+                (&corr, restrict_linked_loci_per_chromosome),
+                &n_threads,
+                &"intermediate_output".to_owned(),
+            )
+            .unwrap();
+        println!(
+            "After imputation:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        println!("Estimated MAE={}", mae);
+        // let n_nan = frequencies_and_phenotypes
+        //     .intercept_and_allele_frequencies
+        //     .iter()
+        //     .fold(0, |n_nan, &x| if x.is_nan() { n_nan + 1 } else { n_nan });
+        // println!("n_nan={}", n_nan);
+        // assert_eq!(n_nan, 1_915); // corresponds to the 1_915 alleles completely missing across all pools
+
+        let keep_p_minus_1 = false;
+        let genotypes_and_phenotypes = file_sync_phen
+            .convert_into_genotypes_and_phenotypes(&filter_stats, keep_p_minus_1, &n_threads)
+            .unwrap();
+
+        let outname = impute_aldknni(
+            genotypes_and_phenotypes,
+            &filter_stats,
+            (
+                &min_loci_corr,
+                &max_pool_dist,
+                &min_l_loci,
+                &min_k_neighbours,
+                &n_reps,
+            ),
+            restrict_linked_loci_per_chromosome,
+            &n_threads,
+            &"test-impute_aldknni.csv".to_owned(),
+        )
+        .unwrap();
+        assert_eq!(outname, "test-impute_aldknni.csv".to_owned()); // Do better!!! Load data - thus working on improving load_table()
+
+        // println!("frequencies_and_phenotypes.intercept_and_allele_frequencies.slice(s![0..5, 39..42])={:?}", frequencies_and_phenotypes.intercept_and_allele_frequencies.slice(s![0..5, 39..42]));
+        // assert_eq!(
+        //     frequencies_and_phenotypes
+        //         .intercept_and_allele_frequencies
+        //         .slice(s![0..5, 1..3])
+        //         .sum_axis(Axis(1))
+        //         .map(|x| sensible_round(*x, 2)),
+        //     Array1::from_elem(5, 1.0)
+        // );
+        // assert_eq!(
+        //     frequencies_and_phenotypes
+        //         .intercept_and_allele_frequencies
+        //         .slice(s![0..5, 39..42])
+        //         .sum_axis(Axis(1))
+        //         .map(|x| sensible_round(*x, 2)),
+        //     Array1::from_elem(5, 1.0)
+        // );
+        // assert_eq!(
+        //     frequencies_and_phenotypes
+        //         .intercept_and_allele_frequencies
+        //         .slice(s![0..5, 119..121])
+        //         .sum_axis(Axis(1))
+        //         .map(|x| sensible_round(*x, 2)),
+        //     Array1::from_elem(5, 1.0)
+        // );
+        // assert_eq!(
+        //     frequencies_and_phenotypes
+        //         .intercept_and_allele_frequencies
+        //         .slice(s![0..5, 400..402])
+        //         .sum_axis(Axis(1))
+        //         .map(|x| sensible_round(*x, 2)),
+        //     Array1::from_elem(5, 1.0)
+        // );
+        // assert_eq!(0, 1);
+    }
+}
diff --git a/src/filter_missing.rs b/src/filter_missing.rs
new file mode 100644
index 0000000..deda6f4
--- /dev/null
+++ b/src/filter_missing.rs
@@ -0,0 +1,364 @@
+use ndarray::prelude::*;
+use std::io::{self, Error, ErrorKind};
+
+use crate::helpers::*;
+use crate::structs_and_traits::*;
+
+impl GenotypesAndPhenotypes {
+    pub fn set_missing_by_depth(
+        &mut self,
+        min_depth_below_which_are_missing: &f64,
+        max_depth_above_which_are_missing: &f64,
+    ) -> io::Result<&mut Self> {
+        self.check().expect("Error calling check() method within set_missing_by_depth() method for GenotypesAndPhenotypes struct.");
+        let (n, _p) = self.intercept_and_allele_frequencies.dim();
+        let (_n, l) = self.coverages.dim();
+        // println!(
+        //     "self.intercept_and_allele_frequencies.dim()={:?}",
+        //     self.intercept_and_allele_frequencies.dim()
+        // );
+        // println!("self.chromosome.len()={:?}", self.chromosome.len());
+        // println!("self.position.len()={:?}", self.position.len());
+        // println!("self.allele.len()={:?}", self.allele.len());
+        // println!("self.coverages.dim()={:?}", self.coverages.dim());
+        let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error defining loci indexes and identities via count_loci() method within set_missing_by_depth() method for GenotypesAndPhenotypes struct.");
+        for i in 0..n {
+            for j in 0..l {
+                if (self.coverages[(i, j)] < *min_depth_below_which_are_missing)
+                    || (self.coverages[(i, j)] > *max_depth_above_which_are_missing)
+                {
+                    self.coverages[(i, j)] = f64::NAN;
+                    // Use the indexes of the locus to set missing values to all alleles in the locus
+                    let idx_ini = loci_idx[j];
+                    let idx_fin = loci_idx[j + 1];
+                    for k in idx_ini..idx_fin {
+                        self.intercept_and_allele_frequencies[(i, k)] = f64::NAN;
+                    }
+                }
+            }
+        }
+        self.check().expect("Error calling check() method within set_missing_by_depth() method for GenotypesAndPhenotypes struct.");
+        Ok(self)
+    }
+
+    pub fn missing_rate(&mut self) -> io::Result<f64> {
+        let (n, l) = self.coverages.dim();
+        let sum = self
+            .coverages
+            .fold(0, |sum, &x| if x.is_nan() { sum + 1 } else { sum });
+        Ok(sensible_round(sum as f64 * 100.0 / ((n * l) as f64), 5))
+    }
+
+    pub fn filter_out_top_missing_pools(
+        &mut self,
+        frac_top_missing_pools: &f64,
+    ) -> io::Result<&mut Self> {
+        self.check().expect("Error calling check() method within filter_out_top_missing_pools() method for GenotypesAndPhenotypes struct.");
+        let n = self.intercept_and_allele_frequencies.nrows();
+        let p = self.intercept_and_allele_frequencies.ncols() - 1;
+        let missingness_per_pool: Array1<f64> = self
+            .intercept_and_allele_frequencies
+            .map_axis(Axis(1), |x| {
+                x.fold(
+                    0_u64,
+                    |n_missing, &x| if x.is_nan() { n_missing + 1 } else { n_missing },
+                )
+            })
+            .map(|&x| x as f64 / p as f64);
+        // println!("missingness_per_pool={:?}", missingness_per_pool);
+        // Define the total number of pools that will be retained
+        let n_missing =
+            missingness_per_pool.fold(0.0, |sum, &x| if x > 0.0 { sum + 1.0 } else { sum });
+        let n_after_filtering = n - (n_missing * frac_top_missing_pools).ceil() as usize;
+        if n_after_filtering == 0 {
+            return Err(Error::new(
+                ErrorKind::Other,
+                "No pools left after filtering, please reduce 'frac_top_missing_pools'".to_owned(),
+            ));
+        }
+        // Sort by increasing missingness
+        let mut idx = (0..n).collect::<Vec<usize>>();
+        idx.sort_by(|&a, &b| {
+            missingness_per_pool[a]
+                .partial_cmp(&missingness_per_pool[b])
+                .expect("Error sorting indexes by sparsity  within filter_out_top_missing_pools() method for GenotypesAndPhenotypes struct.")
+        });
+        // println!("idx={:?}", idx);
+        // Omit the pools with high missingness rates
+        idx = idx[0..n_after_filtering].to_vec();
+        // println!("idx={:?}", idx);
+        // Sort the indexes so that we maintain the order of the pools
+        idx.sort();
+        // println!("idx={:?}", idx);
+        let mut new_intercept_and_allele_frequencies =
+            Array2::from_elem((n_after_filtering, p + 1), f64::NAN);
+        let mut new_phenotypes: Array2<f64> =
+            Array2::from_elem((n_after_filtering, self.phenotypes.ncols()), f64::NAN);
+        let mut new_pool_names: Vec<String> = vec![];
+        let mut new_coverages: Array2<f64> =
+            Array2::from_elem((n_after_filtering, self.coverages.ncols()), f64::NAN);
+        for i in 0..n_after_filtering {
+            // Pool index in the old data
+            let i_ = idx[i];
+            // Intercept
+            new_intercept_and_allele_frequencies[(i, 0)] = 1.0;
+            for j in 1..(p + 1) {
+                new_intercept_and_allele_frequencies[(i, j)] =
+                    self.intercept_and_allele_frequencies[(i_, j)];
+            }
+            for k in 0..new_phenotypes.ncols() {
+                new_phenotypes[(i, k)] = self.phenotypes[(i_, k)];
+            }
+            new_pool_names.push(self.pool_names[i_].to_owned());
+            for l in 0..new_coverages.ncols() {
+                new_coverages[(i, l)] = self.coverages[(i_, l)];
+            }
+        }
+        self.intercept_and_allele_frequencies = new_intercept_and_allele_frequencies;
+        self.phenotypes = new_phenotypes;
+        self.pool_names = new_pool_names;
+        self.coverages = new_coverages;
+        // println!("self.chromosome.len()={:?}", self.chromosome.len());
+        // println!("self.position.len()={:?}", self.position.len());
+        // println!("self.allele.len()={:?}", self.allele.len());
+        // println!("self.intercept_and_allele_frequencies.dim()={:?}", self.intercept_and_allele_frequencies.dim());
+        // println!("self.coverages.len()={:?}", self.coverages.dim());
+        self.check().expect("Error calling check() method within filter_out_top_missing_pools() method for GenotypesAndPhenotypes struct.");
+        Ok(self)
+    }
+
+    // For thinning the data before imputation and also removing completely missing loci after imputation
+    pub fn filter_out_top_missing_loci(
+        &mut self,
+        frac_top_missing_loci: &f64,
+    ) -> io::Result<&mut Self> {
+        self.check().expect("Error calling check() method within filter_out_top_missing_loci() method for GenotypesAndPhenotypes struct.");
+        let n = self.intercept_and_allele_frequencies.nrows();
+        let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error calling count_loci() method within filter_out_top_missing_loci() method for GenotypesAndPhenotypes struct.");
+        let l = loci_idx.len() - 1; // Less one for the trailing locus
+                                    // Define loci start and end indexes
+        let loci_idx_ini = loci_idx[0..l].to_vec();
+        let loci_idx_fin = loci_idx[1..(l + 1)].to_vec();
+        let missingness_per_locus: Array1<f64> = self
+            .coverages
+            .map_axis(Axis(0), |x| {
+                x.fold(
+                    0_u64,
+                    |n_missing, &x| if x.is_nan() { n_missing + 1 } else { n_missing },
+                )
+            })
+            .map(|&x| x as f64 / n as f64);
+        // println!("missingness_per_locus={:?}", missingness_per_locus);
+        // Define the total number of pools that will be retained
+        let l_missing =
+            missingness_per_locus.fold(0.0, |sum, &x| if x > 0.0 { sum + 1.0 } else { sum });
+        // Define the number of loci kept after filtering
+        let l_after_filtering = l - (l_missing * frac_top_missing_loci).ceil() as usize;
+        if l_after_filtering == 0 {
+            return Err(Error::new(
+                ErrorKind::Other,
+                "No loci left after filtering, please reduce 'frac_top_missing_loci'".to_owned(),
+            ));
+        }
+        // Sort by increasing missingness
+        let mut idx = (0..l).collect::<Vec<usize>>();
+        idx.sort_by(|&a, &b| {
+            missingness_per_locus[a]
+                .partial_cmp(&missingness_per_locus[b])
+                .expect("Error sorting indexes by sparsity  within filter_out_top_missing_loci() method for GenotypesAndPhenotypes struct.")
+        });
+        // println!("idx={:?}", idx);
+        // Omit the loci with high missingness rates
+        idx = idx[0..l_after_filtering].to_vec();
+        // println!("idx={:?}", idx);
+        // Sort the indexes so that we maintain the order of the loci
+        idx.sort();
+        // println!("idx={:?}", idx);
+        // Find the number of columns first using the first pool and also set the loci coordinates
+        let mut vec_intercept_and_allele_frequencies_pool_0: Vec<f64> =
+            vec![self.intercept_and_allele_frequencies[(0, 0)]];
+        let mut new_chromosome: Vec<String> = vec![self.chromosome[0].to_owned()];
+        let mut new_position: Vec<u64> = vec![self.position[0]];
+        let mut new_allele: Vec<String> = vec![self.allele[0].to_owned()];
+        let i = 0;
+        for j in idx.clone().into_iter() {
+            // Use the indexes of the locus to set missing values to all alleles in the locus
+            let idx_ini = loci_idx_ini[j];
+            let idx_fin = loci_idx_fin[j];
+            for k in idx_ini..idx_fin {
+                vec_intercept_and_allele_frequencies_pool_0
+                    .push(self.intercept_and_allele_frequencies[(i, k)]);
+                new_chromosome.push(self.chromosome[k].to_owned());
+                new_position.push(self.position[k]);
+                new_allele.push(self.allele[k].to_owned());
+            }
+        }
+        // Populate the intercept and allele frequencies matrix
+        let p = vec_intercept_and_allele_frequencies_pool_0.len(); // includes the intercept
+        let mut new_intercept_and_allele_frequencies = Array2::from_elem((n, p), f64::NAN);
+        let mut new_coverages = Array2::from_elem((n, l_after_filtering), f64::NAN);
+        for i in 0..n {
+            let mut k_new = 1; // Start at the second index after the intercept
+            for j in 0..l_after_filtering {
+                // Intercept
+                new_intercept_and_allele_frequencies[(i, 0)] = 1.0;
+                let j_ = idx[j];
+                let idx_ini = loci_idx_ini[j_];
+                let idx_fin = loci_idx_fin[j_];
+                for k in 0..(idx_fin - idx_ini) {
+                    let k_old = idx_ini + k;
+                    new_intercept_and_allele_frequencies[(i, k_new)] =
+                        self.intercept_and_allele_frequencies[(i, k_old)];
+                    k_new += 1;
+                }
+                // Coverages
+                new_coverages[(i, j)] = self.coverages[(i, j_)];
+            }
+        }
+        self.chromosome = new_chromosome;
+        self.position = new_position;
+        self.allele = new_allele;
+        self.intercept_and_allele_frequencies = new_intercept_and_allele_frequencies;
+        self.coverages = new_coverages;
+        // println!("self={:?}", self);
+        // println!("self.chromosome.len()={:?}", self.chromosome.len());
+        // println!("self.position.len()={:?}", self.position.len());
+        // println!("self.allele.len()={:?}", self.allele.len());
+        // println!("self.intercept_and_allele_frequencies.dim()={:?}", self.intercept_and_allele_frequencies.dim());
+        // println!("self.coverages.len()={:?}", self.coverages.dim());
+        self.check().expect("Error calling check() method within filter_out_top_missing_loci() method for GenotypesAndPhenotypes struct.");
+        Ok(self)
+    }
+}
+
+////////////////////////////////////////////////////////////////////////////////////////////////////////////
+#[cfg(test)]
+mod tests {
+    use super::*;
+    #[test]
+    fn test_filtering_missing() {
+        let file_sync = FileSync {
+            filename: "./tests/test.sync".to_owned(),
+            test: "load".to_owned(),
+        };
+        let file_phen = FilePhen {
+            filename: "./tests/test_pheno.csv".to_owned(),
+            delim: ",".to_owned(),
+            names_column_id: 0,
+            sizes_column_id: 1,
+            trait_values_column_ids: vec![2, 3],
+            format: "default".to_owned(),
+        };
+        let file_sync_phen = *(file_sync, file_phen).lparse().unwrap();
+        ////////////////////////////////////////////////////////////////////////////////////////////////////////
+        ////////////////////////////////////////////////////////////////////////////////////////////////////////
+        ////////////////////////////////////////////////////////////////////////////////////////////////////////
+        // NOTE: MAKE SURE THAT FilterStats is set to no filtering except by zero frequency alleles as in below:
+        //       AND THAT WE KEEP ALL NON-ZERO ALLELES ACROSS ALL ENTRIES!
+        ////////////////////////////////////////////////////////////////////////////////////////////////////////
+        ////////////////////////////////////////////////////////////////////////////////////////////////////////
+        ////////////////////////////////////////////////////////////////////////////////////////////////////////
+        let filter_stats = FilterStats {
+            remove_ns: false,
+            min_quality: 1.0,
+            min_coverage: 0,
+            min_allele_frequency: 0.000001,
+            max_missingness_rate: 0.0,
+            pool_sizes: vec![20., 20., 20., 20., 20.],
+        };
+        let n_threads = 2;
+        let mut frequencies_and_phenotypes = file_sync_phen
+            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &n_threads)
+            .unwrap();
+        let min_depth_below_which_are_missing = 5.0;
+        let max_depth_above_which_are_missing = 100.0;
+        frequencies_and_phenotypes
+            .set_missing_by_depth(
+                &min_depth_below_which_are_missing,
+                &max_depth_above_which_are_missing,
+            )
+            .unwrap();
+        // println!("frequencies_and_phenotypes={:?}", frequencies_and_phenotypes);
+        println!(
+            "frequencies_and_phenotypes.chromosome[0..5]={:?}",
+            &frequencies_and_phenotypes.chromosome[0..5]
+        );
+        println!(
+            "frequencies_and_phenotypes.position[0..5]={:?}",
+            &frequencies_and_phenotypes.position[0..5]
+        );
+        println!(
+            "frequencies_and_phenotypes.allele[0..5]={:?}",
+            &frequencies_and_phenotypes.allele[0..5]
+        );
+        println!(
+            "frequencies_and_phenotypes.intercept_and_allele_frequencies={:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        println!(
+            "frequencies_and_phenotypes.coverages={:?}",
+            frequencies_and_phenotypes.coverages
+        );
+        assert!(frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 1)].is_nan());
+        assert_eq!(
+            frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 4)],
+            1.0 / 21.0
+        );
+        assert_eq!(
+            frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 13)],
+            2.0 / 10.0
+        );
+        assert!(frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 18)].is_nan());
+        assert!(frequencies_and_phenotypes.intercept_and_allele_frequencies[(3, 18)].is_nan());
+
+        println!("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@");
+        println!("Before filtering out pools");
+        println!(
+            "frequencies_and_phenotypes.intercept_and_allele_frequencies:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        println!(
+            "frequencies_and_phenotypes.coverages:\n{:?}",
+            frequencies_and_phenotypes.coverages
+        );
+        frequencies_and_phenotypes
+            .filter_out_top_missing_pools(&0.20)
+            .unwrap();
+        assert_eq!(
+            frequencies_and_phenotypes
+                .intercept_and_allele_frequencies
+                .nrows(),
+            4
+        );
+        println!("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@");
+        println!("After filtering out pools but before filtering out loci");
+        println!(
+            "frequencies_and_phenotypes.intercept_and_allele_frequencies:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        println!(
+            "frequencies_and_phenotypes.coverages:\n{:?}",
+            frequencies_and_phenotypes.coverages
+        );
+        frequencies_and_phenotypes
+            .filter_out_top_missing_loci(&1.00)
+            .unwrap();
+        assert_eq!(
+            frequencies_and_phenotypes
+                .intercept_and_allele_frequencies
+                .ncols(),
+            7637
+        );
+        println!("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@");
+        println!("After filtering out pools and loci");
+        println!(
+            "frequencies_and_phenotypes.intercept_and_allele_frequencies:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        println!(
+            "frequencies_and_phenotypes.coverages:\n{:?}",
+            frequencies_and_phenotypes.coverages
+        );
+        // assert_eq!(0, 1);
+    }
+}
diff --git a/src/geno.rs b/src/geno.rs
new file mode 100644
index 0000000..6666ec5
--- /dev/null
+++ b/src/geno.rs
@@ -0,0 +1,442 @@
+use ndarray::prelude::*;
+use std::fs::File;
+use std::io::{self, prelude::*, BufReader, Error, ErrorKind, SeekFrom};
+use std::str;
+use std::sync::{Arc, Mutex};
+
+use crate::helpers::*;
+use crate::structs_and_traits::*;
+
+impl Parse<LocusFrequencies> for String {
+    fn lparse(&self) -> io::Result<Box<LocusFrequencies>> {
+        // Ignore commented-out lines (i.e. '#' => 35)
+        if self.as_bytes()[0] == 35_u8 {
+            return Err(Error::new(ErrorKind::Other, "Commented out line"));
+        }
+        let vec_line: Vec<&str> = self.split('\t').collect();
+        let vec_line: Vec<&str> = if vec_line.len() == 1 {
+            self.split(',').collect()
+        } else {
+            vec_line
+        };
+        let vec_line: Vec<&str> = if vec_line.len() == 1 {
+            self.split(';').collect()
+        } else {
+            vec_line
+        };
+        // println!("vec_line={:?}", vec_line);
+        let l = vec_line.len();
+        let n = l - 3;
+        let chromosome: String = vec_line[0].to_owned();
+        let position = match vec_line[1].parse::<u64>() {
+            Ok(x) => x,
+            Err(_) => {
+                return Err(Error::new(
+                    ErrorKind::Other,
+                    "Please check format of the file: position is not and integer.",
+                ))
+            }
+        };
+        let alleles_vector: Vec<String> = vec![vec_line[2].to_owned()];
+        let matrix: Array2<f64> = Array2::from_shape_vec(
+            (n, 1),
+            vec_line[3..l]
+                .iter()
+                .map(|x| {
+                    match x.parse::<f64>() {
+                        Ok(x) => x,
+                        Err(_) => f64::NAN,
+                    }
+                })
+                .collect::<Vec<f64>>(),
+        )
+        .expect("Error parsing the allele frequency table text file within the lparse() method for parsing String into LocusFrequencies struct.");
+        let freq_line = LocusFrequencies {
+            chromosome,
+            position,
+            alleles_vector,
+            matrix,
+        };
+        // println!("freq_line={:?}", freq_line);
+        Ok(Box::new(freq_line))
+    }
+}
+
+impl LoadAll for FileGeno {
+    fn per_chunk_load(
+        &self,
+        start: &u64,
+        end: &u64,
+        _filter_stats: &FilterStats,
+        _keep_p_minus_1: bool,
+    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)> {
+        // Input syn file
+        let fname = self.filename.clone();
+        // Prepare output vectors
+        let mut freq: Vec<LocusFrequencies> = Vec::new();
+        let cnts: Vec<LocusCounts> = Vec::new(); // Empty and will remain empty as each line corresponds to just an allele of a locus
+                                                 // Input file chunk
+        let file = File::open(fname.clone()).expect("Error opening the allele frequency table text file within the per_chunk_load() method for FileGeno struct.");
+        let mut reader = BufReader::new(file);
+        // Navigate to the start of the chunk
+        let mut i: u64 = *start;
+        reader.seek(SeekFrom::Start(*start)).expect("Error navigating across the allele frequency table text file within the per_chunk_load() method for FileGeno struct.");
+        // Read and parse until the end of the chunk
+        while i < *end {
+            // Instantiate the line
+            let mut line = String::new();
+            // Read the line which automatically moves the cursor position to the next line
+            let _ = reader.read_line(&mut line).expect("Error reading the allele frequency table text file within the per_chunk_load() method for FileGeno struct.");
+            // Find the new cursor position
+            i = reader.stream_position().expect("Error navigating across the allele frequency table text file within the per_chunk_load() method for FileGeno struct.");
+            // Remove trailing newline character in Unix-like (\n) and Windows (\r)
+            if line.ends_with('\n') {
+                line.pop();
+                if line.ends_with('\r') {
+                    line.pop();
+                }
+            }
+            // Parse the geno line
+            let allele_freqs: LocusFrequencies = match line.lparse() {
+                Ok(x) => *x,
+                Err(x) => match x.kind() {
+                    ErrorKind::Other => continue,
+                    _ => {
+                        return Err(Error::new(
+                            ErrorKind::Other,
+                            "T_T Input sync file error, i.e. '".to_owned()
+                                + &fname
+                                + "' at line with the first 20 characters as: "
+                                + &line[0..20]
+                                + ".",
+                        ))
+                    }
+                },
+            };
+            freq.push(allele_freqs);
+        }
+        Ok((freq, cnts))
+    }
+
+    fn load(
+        &self,
+        filter_stats: &FilterStats,
+        keep_p_minus_1: bool,
+        n_threads: &usize,
+    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)> {
+        let fname = self.filename.clone();
+        // Find the positions whereto split the file into n_threads pieces
+        let chunks = find_file_splits(&fname, n_threads).expect("Error splitting the allele frequency table file format given the number of threads suppplied within load() method for FileGeno struct.");
+        let n_threads = chunks.len() - 1;
+        println!("Chunks: {:?}", chunks);
+        // Tuple arguments of pileup2sync_chunks
+        // Instantiate thread object for parallel execution
+        let mut thread_objects = Vec::new();
+        // Vector holding all returns from pileup2sync_chunk()
+        let thread_ouputs_freq: Arc<Mutex<Vec<LocusFrequencies>>> =
+            Arc::new(Mutex::new(Vec::new())); // Mutated within each thread worker
+        let thread_ouputs_cnts: Arc<Mutex<Vec<LocusCounts>>> = Arc::new(Mutex::new(Vec::new())); // Mutated within each thread worker
+                                                                                                 // Making four separate threads calling the `search_for_word` function
+        for i in 0..n_threads {
+            // Clone pileup2sync_chunk parameters
+            let self_clone = self.clone();
+            let start = chunks[i];
+            let end = chunks[i + 1];
+            let filter_stats = filter_stats.clone();
+            let thread_ouputs_freq_clone = thread_ouputs_freq.clone(); // Mutated within the current thread worker
+            let thread_ouputs_cnts_clone = thread_ouputs_cnts.clone(); // Mutated within the current thread worker
+            let thread = std::thread::spawn(move || {
+                let (mut freq, mut cnts) = self_clone
+                    .per_chunk_load(&start, &end, &filter_stats, keep_p_minus_1)
+                    .expect(
+                        "Error calling per_chunk_load() within load() method for FileGeno struct.",
+                    );
+                thread_ouputs_freq_clone
+                    .lock()
+                    .expect("Thread error within load() method for FileGeno struct.")
+                    .append(&mut freq);
+                thread_ouputs_cnts_clone
+                    .lock()
+                    .expect("Thread error within load() method for FileGeno struct.")
+                    .append(&mut cnts);
+            });
+            thread_objects.push(thread);
+        }
+        // Waiting for all threads to finish
+        for thread in thread_objects {
+            thread.join().expect("Unknown thread error occured.");
+        }
+        // Extract output filenames from each thread into a vector and sort them
+        let mut freq: Vec<LocusFrequencies> = Vec::new();
+        let cnts: Vec<LocusCounts> = Vec::new(); // Empty and will remain empty as each line corresponds to just an allele of a locus
+        for x in thread_ouputs_freq.lock().expect("Error unlocking the threads after multi-threaded execution of per_chunk_load() within load() method for FileGeno struct.").iter() {
+            freq.push(x.clone());
+        }
+        freq.sort_by(|a, b| {
+            a.chromosome
+                .cmp(&b.chromosome)
+                .then(a.position.cmp(&b.position))
+        });
+        Ok((freq, cnts))
+    }
+
+    fn convert_into_genotypes_and_phenotypes(
+        &self,
+        filter_stats: &FilterStats,
+        keep_p_minus_1: bool,
+        n_threads: &usize,
+    ) -> io::Result<GenotypesAndPhenotypes> {
+        // No filtering! Just loading the allele frequency data
+        // Extract pool names
+        let file: File = File::open(self.filename.clone()).expect("Error opening the allele frequency table text file within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.");
+        let reader = io::BufReader::new(file);
+        let mut header: String = match reader.lines().next() {
+            Some(x) => x.expect("Error reading the allele frequency table text file within the convert_into_genotypes_and_phenotypes() method for FileGeno struct."),
+            None => return Err(Error::new(ErrorKind::Other, "No header line found.")),
+        };
+        if header.ends_with('\n') {
+            header.pop();
+            if header.ends_with('\r') {
+                header.pop();
+            }
+        }
+        let vec_header: Vec<&str> = header.split('\t').collect();
+        let vec_header: Vec<&str> = if vec_header.len() == 1 {
+            header.split(',').collect()
+        } else {
+            vec_header
+        };
+        let vec_header: Vec<&str> = if vec_header.len() == 1 {
+            header.split(';').collect()
+        } else {
+            vec_header
+        };
+
+        let pool_names: Vec<String> = vec_header[3..vec_header.len()]
+            .iter()
+            .map(|&x| x.to_owned())
+            .collect();
+        // Load allele frequencies
+        let (freqs, _cnts) = self.load(filter_stats, keep_p_minus_1, n_threads).expect("Error calling load() within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.");
+        let n = freqs[0].matrix.nrows();
+        assert_eq!(
+            n,
+            pool_names.len(),
+            "Header names and allele frequency data does not have the same number of samples."
+        );
+        let mut p = freqs.len(); // total number of alleles across all loci
+        p += 1; // include the intercept
+        let mut chromosome: Vec<String> = Vec::with_capacity(p);
+        chromosome.push("intercept".to_owned());
+        let mut position: Vec<u64> = Vec::with_capacity(p);
+        position.push(0);
+        let mut allele: Vec<String> = Vec::with_capacity(p);
+        allele.push("intercept".to_owned());
+        // Populate the GenotypeAndPhenotypes struct fields
+        let mut l: usize = 0; // loci counter
+        let mut mat: Array2<f64> = Array2::from_elem((n, p), 1.0);
+        // Count the number of loci (Note: assumes the loci are sorted) and extract the loci coordinates
+        let mut loci_idx: Vec<usize> = vec![];
+        let mut loci_chr: Vec<String> = vec![];
+        let mut loci_pos: Vec<u64> = vec![];
+        for j in 1..p {
+            let f = &freqs[j - 1];
+            chromosome.push(f.chromosome.clone());
+            position.push(f.position);
+            allele.push(f.alleles_vector[0].clone());
+            if (chromosome[j - 1] != chromosome[j]) || (position[j - 1] != position[j]) {
+                l += 1;
+                loci_idx.push(j);
+                loci_chr.push(chromosome[j].to_owned());
+                loci_pos.push(position[j]);
+            }
+            for i in 0..n {
+                mat[(i, j)] = f.matrix[(i, 0)];
+            }
+        }
+        // Add the last allele of the last locus
+        loci_idx.push(p);
+        loci_chr.push(chromosome.last().expect("Error push chromosome within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.").to_owned());
+        loci_pos.push(position.last().expect("Error push position within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.").to_owned());
+        // Add alternative alleles if the allele frequencies per locus do not add up to 1.00 (~or if only one allele per locus is present~)
+        // Count how many allele we have to add
+        for j in 0..l {
+            let idx_ini = loci_idx[j];
+            let idx_fin = loci_idx[j + 1];
+            let _n_alleles = idx_fin - idx_ini;
+            let mut freq_sum_less_than_one = false;
+            for i in 0..n {
+                if mat.slice(s![i, idx_ini..idx_fin]).sum() < 1.0 {
+                    freq_sum_less_than_one = true;
+                    break;
+                }
+            }
+            // if (n_alleles == 1) || freq_sum_less_than_one {
+            if freq_sum_less_than_one {
+                p += 1;
+            }
+        }
+        let mut chromosome_new: Vec<String> = Vec::with_capacity(p);
+        chromosome_new.push("intercept".to_owned());
+        let mut position_new: Vec<u64> = Vec::with_capacity(p);
+        position_new.push(0);
+        let mut allele_new: Vec<String> = Vec::with_capacity(p);
+        allele_new.push("intercept".to_owned());
+        let mut mat_new: Array2<f64> = Array2::from_elem((n, p), 1.0);
+        let mut j = 1;
+        for j_orig in 0..l {
+            let idx_ini = loci_idx[j_orig];
+            let idx_fin = loci_idx[j_orig + 1];
+            let n_alleles = idx_fin - idx_ini;
+            // println!("j={}; j_orig={}; idx_ini={}; idx_fin={}; n_alleles={}", j, j_orig, idx_ini, idx_fin, n_alleles);
+            for a in idx_ini..idx_fin {
+                chromosome_new.push(chromosome[a].to_owned());
+                position_new.push(position[a]);
+                allele_new.push(allele[a].to_owned());
+                for i in 0..n {
+                    mat_new[(i, j)] = mat[(i, a)];
+                }
+                j += 1;
+            }
+            let mut freq_sum_less_than_one = false;
+            for i in 0..n {
+                if mat.slice(s![i, idx_ini..idx_fin]).sum() < 1.0 {
+                    freq_sum_less_than_one = true;
+                    break;
+                }
+            }
+            if (n_alleles == 1) || freq_sum_less_than_one {
+                chromosome_new.push(chromosome[idx_ini].to_owned());
+                position_new.push(position[idx_ini]);
+                allele_new.push("U".to_owned()); // unknown alternative allele
+                for i in 0..n {
+                    let alt = 1.00 - mat.slice(s![i, idx_ini..idx_fin]).sum();
+                    mat_new[(i, j)] = alt;
+                }
+                j += 1;
+            }
+        }
+        Ok(GenotypesAndPhenotypes {
+            chromosome: chromosome_new,
+            position: position_new,
+            allele: allele_new,
+            intercept_and_allele_frequencies: mat_new,
+            phenotypes: Array2::from_shape_vec((n, 1), vec![f64::NAN; n]).expect("Error generating dummy phenotype data within the convert_into_genotypes_and_phenotypes() method for FileGeno struct."),
+            pool_names,
+            coverages: Array2::from_elem((n, l), 1_000.0),
+        })
+    }
+}
+
+pub fn load_geno<'a, 'b>(
+    fname: &'a str,
+    filter_stats: &'b mut FilterStats,
+    _fname_out_prefix: &'a str,
+    _rand_id: &'a str,
+    n_threads: &'a usize,
+) -> io::Result<(GenotypesAndPhenotypes, &'b FilterStats)> {
+    // Extract pool names from the txt file
+    let file: File = File::open(fname).expect("Error reading the allele frequency table file.");
+    let reader = io::BufReader::new(file);
+    let mut header: String = reader
+        .lines()
+        .next()
+        .expect("Error reading the allele frequency table file.")
+        .expect("Please check the format of the allele frequency table text file.");
+    if header.ends_with('\n') {
+        header.pop();
+        if header.ends_with('\r') {
+            header.pop();
+        }
+    }
+    let vec_header: Vec<&str> = header.split('\t').collect();
+    let vec_header: Vec<&str> = if vec_header.len() == 1 {
+        header.split(',').collect()
+    } else {
+        vec_header
+    };
+    let vec_header: Vec<&str> = if vec_header.len() == 1 {
+        header.split(';').collect()
+    } else {
+        vec_header
+    };
+    let pool_names: Vec<String> = vec_header[3..vec_header.len()]
+        .iter()
+        .map(|&x| x.to_owned())
+        .collect();
+    let n = pool_names.len();
+    // If a single pool size was supplied then we are assuming the same sizes across all pools
+    if filter_stats.pool_sizes.len() == 1 {
+        filter_stats.pool_sizes = vec![filter_stats.pool_sizes[0]; n];
+    }
+    assert_eq!(
+        filter_stats.pool_sizes.len(),
+        n,
+        "Error: the number of pools and the pool sizes do not match."
+    );
+    let file_geno = FileGeno {
+        filename: fname.to_owned(),
+    };
+    Ok((file_geno
+        .convert_into_genotypes_and_phenotypes(filter_stats, false, n_threads)
+        .expect("Error parsing the genotype data (extracted from allele frequency table text file) via convert_into_genotypes_and_phenotypes() method within impute()."), 
+        filter_stats))
+}
+
+#[cfg(test)]
+mod tests {
+    use super::*;
+    #[test]
+    fn test_geno() {
+        let line: String = "chr_1\t12345\tA\t0.25\t0.1\t0.9\t0.45\t0.9\t0.85".to_owned();
+        let _genotypes_and_phenotypes: LocusFrequencies = *line.lparse().unwrap();
+
+        let file_geno = FileGeno {
+            filename: "tests/test.txt".to_owned(),
+        };
+        let filter_stats = FilterStats {
+            remove_ns: true,
+            min_quality: 0.005,
+            min_coverage: 1,
+            min_allele_frequency: 0.005,
+            max_missingness_rate: 0.0,
+            pool_sizes: vec![20., 20., 20., 20., 20.],
+        };
+        let n_threads = 8;
+
+        let genotypes_and_phenotype = file_geno
+            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &n_threads)
+            .unwrap();
+        // println!("genotypes_and_phenotype={:?}", genotypes_and_phenotype);
+        assert!(
+            genotypes_and_phenotype.pool_names
+                == vec![
+                    "G1".to_owned(),
+                    "G2".to_owned(),
+                    "G3".to_owned(),
+                    "G5".to_owned()
+                ]
+        );
+        assert!(genotypes_and_phenotype.chromosome[0] == "intercept".to_owned());
+        assert!(genotypes_and_phenotype.chromosome[1] == "Chromosome1".to_owned());
+        assert!(genotypes_and_phenotype.chromosome[2] == "Chromosome1".to_owned());
+        assert!(genotypes_and_phenotype.chromosome[3] == "Chromosome1".to_owned());
+        assert!(genotypes_and_phenotype.chromosome[4] == "Chromosome1".to_owned());
+        assert!(genotypes_and_phenotype.position[0] == 0);
+        assert!(genotypes_and_phenotype.position[1] == 456527);
+        assert!(genotypes_and_phenotype.position[2] == 456527);
+        assert!(genotypes_and_phenotype.position[3] == 1133215);
+        assert!(genotypes_and_phenotype.position[4] == 1133215);
+        assert!(genotypes_and_phenotype.allele[0] == "intercept".to_owned());
+        assert!(genotypes_and_phenotype.allele[1] == "T".to_owned());
+        assert!(genotypes_and_phenotype.allele[2] == "C".to_owned());
+        assert!(genotypes_and_phenotype.allele[3] == "A".to_owned());
+        assert!(genotypes_and_phenotype.allele[4] == "C".to_owned());
+        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(0, 0)] == 1.00);
+        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(0, 1)] == 0.238095);
+        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(0, 2)] == 0.761905);
+        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(1, 3)] == 0.0);
+        assert!(genotypes_and_phenotype.intercept_and_allele_frequencies[(2, 4)] == 1.0);
+        // assert!(0 == 1);
+    }
+}
diff --git a/src/helpers.rs b/src/helpers.rs
new file mode 100644
index 0000000..1bf8c99
--- /dev/null
+++ b/src/helpers.rs
@@ -0,0 +1,257 @@
+//! Helper functions including parallel selective matrix multiplication and pseudo-inverse via singular value decomposition
+
+use ndarray::prelude::*;
+
+use statrs::distribution::{ContinuousCDF, StudentsT};
+
+use std::fs::File;
+use std::io::{self, prelude::*, BufReader, SeekFrom};
+use std::io::{Error, ErrorKind};
+
+// use crate::structs_and_traits::*;
+
+/// Find the start position of the next line given the current position,`pos`.
+/// Positions are coded as the nth UTF8 character count in the file counting the newline characters at the end of each line.
+/// This is used in file splitting to allocate a chunk of the file to a single thread for parallel processing.
+fn find_start_of_next_line(fname: &str, pos: u64) -> u64 {
+    let mut out = pos;
+    if out > 0 {
+        let mut file = File::open(fname).expect("Error opening file.");
+        let _ = file.seek(SeekFrom::Start(out));
+        let mut reader = BufReader::new(file);
+        let mut line = String::new();
+        let _ = reader.read_line(&mut line).expect("Error reading file.");
+        out = reader.stream_position().expect("Error navigating file.");
+    }
+    out
+}
+
+/// Detect the cursor positions across the input file corresponding to the splits for parallel computation
+pub fn find_file_splits(fname: &str, n_threads: &usize) -> io::Result<Vec<u64>> {
+    let mut file = match File::open(fname) {
+        Ok(x) => x,
+        Err(_) => return Err(Error::new(ErrorKind::Other, "The input file: ".to_owned() + fname + " does not exist. Please make sure you are entering the correct filename and/or the correct path.")),
+    };
+    let _ = file.seek(SeekFrom::End(0));
+    let mut reader = BufReader::new(file);
+    let end = reader.stream_position().expect("Error navigating file.");
+    let mut out = (0..end)
+        .step_by((end as usize) / n_threads)
+        .collect::<Vec<u64>>();
+    out.push(end);
+    for x in &mut out {
+        *x = find_start_of_next_line(fname, x.to_owned());
+    }
+    out.dedup();
+    Ok(out)
+}
+
+/// Round-up an `f64` to `n_digits` decimal points
+pub fn sensible_round(x: f64, n_digits: usize) -> f64 {
+    let factor = ("1e".to_owned() + &n_digits.to_string())
+        .parse::<f64>()
+        .expect("Error parsing String into f64.");
+    (x * factor).round() / factor
+}
+
+/// Round-up an `f64` to `n_digits` decimal points and cast into a `String`
+pub fn parse_f64_roundup_and_own(x: f64, n_digits: usize) -> String {
+    let s = x.to_string();
+    if s.len() < n_digits {
+        return s;
+    }
+    sensible_round(x, n_digits).to_string()
+}
+
+/// Calculate the mean of a 1D array ignoring NaN
+pub fn mean_array1_ignore_nan(
+    x: &ArrayBase<ndarray::ViewRepr<&f64>, Dim<[usize; 1]>>,
+) -> io::Result<f64> {
+    // let sum = x.fold(0.0, |sum, &a| if a.is_nan() { sum } else { sum + a });
+    // let counts = x.iter().filter(|&a| !a.is_nan()).count() as f64;
+    // Ok(sum / counts)
+    let mut sum = 0.0;
+    let mut n = 0.0;
+    for &x in x.iter() {
+        if !x.is_nan() {
+            sum += x;
+            n += 1.0;
+        }
+    }
+    Ok(sum / n)
+}
+
+/// Calculate the axis-wise means of an array while ignoring NaN
+pub fn mean_axis_ignore_nan<D>(
+    a: &Array<f64, D>,
+    axis: usize,
+) -> io::Result<Array<f64, <D>::Smaller>>
+where
+    D: ndarray::Dimension + ndarray::RemoveAxis,
+{
+    let sum: Array<f64, <D>::Smaller> =
+        a.fold_axis(
+            Axis(axis),
+            0.0,
+            |&sum, &x| {
+                if x.is_nan() {
+                    sum
+                } else {
+                    sum + x
+                }
+            },
+        );
+    let n: Array<f64, <D>::Smaller> = a.map_axis(Axis(axis), |x| {
+        x.iter().filter(|&&y| !y.is_nan()).count() as f64
+    });
+    let out: Array<f64, <D>::Smaller> = sum / n;
+    Ok(out)
+}
+
+// Pearson's product moment correlation using only complete data across pair of vectors
+pub fn pearsons_correlation_pairwise_complete(
+    x: &ArrayBase<ndarray::ViewRepr<&f64>, Dim<[usize; 1]>>,
+    y: &ArrayBase<ndarray::ViewRepr<&f64>, Dim<[usize; 1]>>,
+) -> io::Result<(f64, f64)> {
+    let n = x.len();
+    if n != y.len() {
+        return Err(Error::new(
+            ErrorKind::Other,
+            "Input vectors are not the same size.",
+        ));
+    }
+    // Using pairs of values with non-missing data across the pair of vectors
+    // Note that this may result in unreasonable correlations is used for a matrix, i.e. column vectors may be comparing different sets of rows
+    let filtered_vectors: (Vec<f64>, Vec<f64>) = x
+        .iter()
+        .zip(y.iter())
+        .filter(|&(&x, &y)| (!x.is_nan()) && (!y.is_nan()))
+        .unzip();
+    // println!("q.0={:?}; q.1={:?}", q.0, q.1);
+    let x = Array1::from_vec(filtered_vectors.0);
+    let y = Array1::from_vec(filtered_vectors.1);
+    // Make sure we are handling NAN properly
+    let mu_x = mean_array1_ignore_nan(&x.view())
+        .expect("Error calculating the mean of x while ignoring NANs.");
+    let mu_y = mean_array1_ignore_nan(&y.view())
+        .expect("Error calculating the mean of y while ignoring NANs.");
+    let x_less_mu_x = x
+        .iter()
+        .filter(|&x| !x.is_nan())
+        .map(|x| x - mu_x)
+        .collect::<Array1<f64>>();
+    let y_less_mu_y = y
+        .iter()
+        .filter(|&y| !y.is_nan())
+        .map(|y| y - mu_y)
+        .collect::<Array1<f64>>();
+    let x_less_mu_x_squared = x_less_mu_x.map(|x| x.powf(2.0));
+    let y_less_mu_y_squared = y_less_mu_y.map(|y| y.powf(2.0));
+    let numerator = (x_less_mu_x * y_less_mu_y).sum();
+    let denominator = x_less_mu_x_squared.sum().sqrt() * y_less_mu_y_squared.sum().sqrt();
+    let r_tmp = numerator / denominator;
+    let r = match r_tmp.is_nan() {
+        true => {
+            if numerator == 0.0 {
+                0.0
+            } else {
+                return Ok((f64::NAN, f64::NAN));
+            }
+        }
+        false => r_tmp,
+    };
+    let sigma_r_denominator = (1.0 - r.powf(2.0)) / (n as f64 - 2.0);
+    if sigma_r_denominator <= 0.0 {
+        // Essentially no variance in r2, hence very significant
+        return Ok((r, f64::EPSILON));
+    }
+    let sigma_r = sigma_r_denominator.sqrt();
+    let t = r / sigma_r;
+    let pval = if n > 2 {
+        let d = StudentsT::new(0.0, 1.0, n as f64 - 2.0)
+            .expect("Error defining Student's t-distribution.");
+        2.00 * (1.00 - d.cdf(t.abs()))
+    } else {
+        f64::NAN
+    };
+    Ok((sensible_round(r, 7), pval))
+}
+
+////////////////////////////////////////////////////////////////////////////////////////////////////////////
+#[cfg(test)]
+mod tests {
+    // Note this useful idiom: importing names from outer (for mod tests) scope.
+    use super::*;
+    #[test]
+    fn test_helpers() {
+        if cfg!(windows) {
+            assert_eq!(
+                find_start_of_next_line(&"./tests/test.pileup".to_owned(), 56),
+                58
+            ); // line 1 has a total of 57 characters in windows and only 56 in unix, so the next line should start at the 58th character position
+        } else {
+            assert_eq!(
+                find_start_of_next_line(&"./tests/test.pileup".to_owned(), 56),
+                57
+            ); // 56th character is the newline character as line 1 has a total of 56 characters, so the next line should start at the 57th character position
+        }
+        assert_eq!(
+            find_file_splits(&"./tests/test.pileup".to_owned(), &2)
+                .unwrap()
+                .len(),
+            3
+        );
+        assert_eq!(sensible_round(0.420000012435, 4), 0.42);
+        assert_eq!(
+            parse_f64_roundup_and_own(0.690000012435, 4),
+            "0.69".to_owned()
+        );
+        let _a: Array2<f64> =
+            Array2::from_shape_vec((5, 3), (0..15).map(|x| x as f64).collect::<Vec<f64>>())
+                .unwrap();
+        let _b: Array2<f64> = Array2::from_shape_vec(
+            (5, 3),
+            (0..15).map(|x| x as f64 / 2.0).collect::<Vec<f64>>(),
+        )
+        .unwrap();
+        let _idx_w3: Vec<usize> = vec![1, 3, 4];
+        let _idx_x2: Vec<usize> = vec![0, 2];
+        let _idx_y2: Vec<usize> = vec![1, 3];
+        let _idx_z2: Vec<usize> = vec![0, 1];
+
+        let array1d: Array1<f64> = Array1::from_vec(vec![0.1, 0.2, 0.3, f64::NAN, 0.5]);
+        assert_eq!(mean_array1_ignore_nan(&array1d.view()).unwrap(), 0.275);
+        let mut array2d: Array2<f64> =
+            Array2::from_shape_vec((2, 5), (0..10).map(|x| x as f64).collect::<Vec<f64>>())
+                .unwrap();
+        array2d[(0, 0)] = f64::NAN;
+        println!("array2d={:?}", array2d);
+        assert_eq!(
+            Array1::from_shape_vec(5, vec![5.0, 3.5, 4.5, 5.5, 6.5]).unwrap(),
+            mean_axis_ignore_nan(&array2d, 0).unwrap()
+        );
+        assert_eq!(
+            Array1::from_shape_vec(2, vec![2.5, 7.0]).unwrap(),
+            mean_axis_ignore_nan(&array2d, 1).unwrap()
+        );
+        let _fname = "./tests/test.csv".to_owned();
+        let _delimiter = ",".to_owned();
+        let _chr_col = 0;
+        let _pos_start_col = 1;
+        let _pos_end_col = 1;
+        let _data_start_col = 2;
+        let _data_end_col = 6;
+
+        let x = Array1::from_vec(vec![0.1, 0.2, 0.3, 0.4, 0.5]);
+        let y = Array1::from_vec(vec![0.2, 0.4, 0.6, 0.8, 1.0]);
+        let z = Array1::from_vec(vec![0.0, 0.1, 0.0, 0.1, 0.0]);
+        let corr1 = pearsons_correlation_pairwise_complete(&x.view(), &y.view()).unwrap();
+        let corr2 = pearsons_correlation_pairwise_complete(&x.view(), &z.view()).unwrap();
+        println!("corr1={:?}", corr1);
+        println!("corr2={:?}", corr2);
+        assert!(corr1.0 == 1.00);
+        assert!(corr1.1 < 0.0001);
+        assert!(corr2.0 == 0.00);
+        assert!(corr2.1 == 1.00);
+    }
+}
diff --git a/src/main.rs b/src/main.rs
new file mode 100644
index 0000000..9c8545a
--- /dev/null
+++ b/src/main.rs
@@ -0,0 +1,275 @@
+use clap::Parser;
+
+use rand::Rng;
+
+mod aldknni;
+mod filter_missing;
+mod geno;
+mod helpers;
+mod mvi;
+mod phen;
+mod structs_and_traits;
+mod sync;
+mod vcf;
+use crate::aldknni::*;
+use crate::geno::*;
+use crate::mvi::*;
+use crate::structs_and_traits::*;
+use crate::sync::*;
+use crate::vcf::*;
+
+#[derive(Parser, Debug)]
+#[clap(
+    author = "Jeff Paril",
+    version = "0.1.0",
+    about = "Impute allele frequencies to reduce sparsity of genotype data from polyploids, pooled individuals, and populations.",
+    long_about = "Imputation of genotype data from sequencing of more than 2 sets of genomes, i.e. polyploid individuals, population samples, or pools of individuals. This library can also perform simple genotype data filtering prior to imputation. Two imputation methods are available: (1) mean value imputation which uses the arithmentic mean of the locus across non-missing pools; (2) adaptive linkage-informed k-nearest neighbour imputation. This is an attempt to extend the [LD-kNNi method of Money et al, 2015, i.e. LinkImpute](https://doi.org/10.1534/g3.115.021667), which was an extension of the [kNN imputation of Troyanskaya et al, 2001](https://doi.org/10.1093/bioinformatics/17.6.520). Similar to LD-kNNi, LD is estimated using Pearson's product moment correlation across loci per pair of samples. Mean absolute difference in allele frequencies is used to define genetic distance between samples, instead of taxicab or Manhattan distance in LD-kNNi. Four parameters can be set by the user, (1) minimum loci correlation threshold: dictates the minimum LD between the locus requiring imputation and other loci which will be used to estimate genetic distance between samples; (2) maximum genetic distance threshold: sets the maximum genetic distance between the sample requiring imputation and the samples (i.e. nearest neighbours) to be used in weighted mean imputation of missing allele frequencies; (3) minimum number of loci linked to the locus requiring imputation: overrides minimum loci correlation threshold if this minimum is not met; and (4) minimum k-nearest neighbours: overrides maximum genetic distance threshold if this minimum is not met. The first two parameters (minimum loci correlation and maximum genetic distance thresholds) can be optimised per locus requiring imputation using non-missing samples as replicates simulating missing data to minimum the mean absolute error in imputation."
+)]
+struct Args {
+    /// Filename of the genotype file to be imputed. The format can be an uncompressed [vcf](https://github.com/jeffersonfparil/imputef/tree/main?tab=readme-ov-file#variant-call-format-vcf), [sync](https://github.com/jeffersonfparil/imputef/tree/main?tab=readme-ov-file#synchronised-pileup-sync), or [allele frequency table](https://github.com/jeffersonfparil/imputef/tree/main?tab=readme-ov-file#allele-frequency-table-csv)
+    #[clap(short, long)]
+    fname: String,
+    /// Imputation method. Use "mean" for mean value imputation or "aldknni" for adaptive LD-kNN imputation
+    #[clap(short, long, default_value = "aldknni")]
+    method: String,
+    /// Minimum coverage per locus, i.e. if at a locus, a pool falls below this value (does not skip missing data, i.e. missing locus has a depth of zero), then the whole locus is omitted.
+    /// Set this to zero if the vcf has been filtered and contains missing values, i.e. `./.` or `.|.`.
+    #[clap(long, default_value_t = 0)]
+    min_coverage: u64,
+    /// Minimum allele frequency per locus, i.e. if at a locus, a pool has all its alleles below this value and/or above the additive complement of this value (skipping missing data), then the entire locus is omitted.
+    #[clap(long, default_value_t = 0.0001)]
+    min_allele_frequency: f64,
+    /// Maximum fraction of pools missing per locus, i.e. if at a locus, there were more pools missing than the coverage dictated by this threshold, then the locus is omitted.
+    #[clap(long, default_value_t = 1.00)]
+    max_missingness_rate_per_locus: f64,
+    /// Vector of pool sizes, i.e. the number of individuals included in each pool. Enter the pool sizes separated by commas `,`.
+    /// This can also be set to a single arbitrarily large value like 100 for individual polyploids or if allele frequency estimates are expected to be accurate.
+    #[clap(long, value_parser, value_delimiter = ',', default_value = "100.0")]
+    pool_sizes: Vec<f64>,
+    /// Minimum depth at which loci with depth below this threshold are set to missing. Set to one if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero.
+    #[clap(long, default_value_t = 1.00)]
+    min_depth_below_which_are_missing: f64,
+    /// Maximum depth at which loci with depth above this threshold are set to missing. Set to some large arbitrarily large value (e.g. 1000000) if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an integer above zero.
+    #[clap(long, default_value_t = 1000000.0)]
+    max_depth_above_which_are_missing: f64,
+    /// Fraction of pools with the highest number of missing loci to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to a decimal number between zero and one.
+    #[clap(long, default_value_t = 0.0)]
+    frac_top_missing_pools: f64,
+    /// Fraction of loci with the highest number of pools with missing data to be omitted. Set to zero if the input vcf has already been filtered and the loci beyond the depth thresholds have been set to missing, otherwise set to an decimal number between zero and one.
+    #[clap(long, default_value_t = 0.0)]
+    frac_top_missing_loci: f64,
+    /// Minimum correlation (Pearson's correlation) between the locus requiring imputation and other loci deemed to be in linkage with it.
+    /// Ranges from 0.0 to 1.0, but use -1.0 or any negative number to perform per locus optimisations to find the best value minimising imputation.
+    #[clap(long, default_value_t = 0.9)]
+    min_loci_corr: f64,
+    /// Maximum genetic distance (mean absolute difference in allele frequencies) between the pool or sample requiring imputation and pools or samples deemed to be the closest neighbours.
+    /// Ranges from 0.0 to 1.0, but use -1.0 or any negative number to perform per locus optimisations to find the best value minimising imputation.
+    #[clap(long, default_value_t = 0.1)]
+    max_pool_dist: f64,
+    /// Minimum number of linked loci to be used in estimating genetic distances between the pool or sample requiring imputation and other pools or samples (minimum value of 1).
+    /// This argument overrides `min_loci_corr`, i.e. the minimum number of loci will be met regardless of the minimum loci correlation threshold.
+    #[clap(long, default_value_t = 20)]
+    min_l_loci: usize,
+    /// Minimum number of k-nearest neighbours of the pool or sample requiring imputation (minimum value of 1).
+    /// This argument overrides `max_pool_dist`, i.e. the minimum number of k-nearest neighbours will be met regardless of the maximum genetic distance threshold.
+    #[clap(long, default_value_t = 5)]
+    min_k_neighbours: usize,
+    /// Restrict the choice of linked loci to within the chromosome the locus requiring imputation belongs to?
+    #[clap(long, default_value_t = true)]
+    restrict_linked_loci_per_chromosome: bool,
+    /// Number of replications for the optimisation for the minimum loci correlation, and/or maximum genetic distance (minimum value of 1).
+    #[clap(long, default_value_t = 20)]
+    n_reps: usize,
+    /// Number of computing threads or processor cores to use in the computations.
+    #[clap(long, default_value_t = 2)]
+    n_threads: usize,
+    /// Prefix of the output files including the [imputed allele frequency table](#allele-frequency-table-csv) (`<fname_out_prefix>-<time>-<random_id>-IMPUTED.csv`).
+    #[clap(long, default_value = "")]
+    fname_out_prefix: String,
+}
+
+/// # imputef: Impute allele frequencies to reduce sparsity of genotype data from polyploids, pooled individuals, and populations.
+fn main() {
+    let args = Args::parse();
+    // Identify the format of the input file
+    // 1) vcf - richest (*.vcf)
+    // 2) sync - intermediate richness and most preferred (*.sync)
+    // 3) geno - least detailed - tab-delimited: chr,pos,allele,sample-1,sample-2,some-name-@#@#$%^&*(+)}:<'?"-with-a-bunch-of-asci-characters,... (*.txt)
+    let extension_name: &str = args
+        .fname
+        .split('.')
+        .collect::<Vec<&str>>()
+        .last()
+        .expect("Error extracting the last character of the input filename in impute().");
+    println!("##################################################");
+    if extension_name == "vcf" {
+        println!("Input uncompressed vcf file:\n{:?}", args.fname);
+    } else if extension_name == "sync" {
+        println!("Input sync file:\n{:?}", args.fname);
+    } else {
+        println!("Input csv file:\n{:?}", args.fname);
+    }
+    println!(
+        "Minimum coverage per locus across pools:\n{:?}",
+        args.min_coverage
+    );
+    println!("Minimum allele frequency:\n{:?}", args.min_allele_frequency);
+    println!(
+        "Maximum fraction of pools missing at each locus:\n{:?}",
+        args.max_missingness_rate_per_locus
+    );
+    println!("Pool sizes:\n{:?}", args.pool_sizes);
+    println!(
+        "Number of threads to use for parallel processing:\n{:?}",
+        args.n_threads
+    );
+    // Create a random ID by concatenating the time in seconds with some trailing random numbers for extra safe write-outs (extra safe because Rust will complain if the file which we want to write on already exists)
+    let time = std::time::SystemTime::now()
+        .duration_since(std::time::UNIX_EPOCH)
+        .expect("Error extracting time in UNIX_EPOCH within impute().")
+        .as_secs_f64();
+    let mut rng = rand::thread_rng();
+    let num = rng.gen::<u32>();
+    let rand_id = time.to_string() + "." + &num.to_string();
+    println!("rand_id={:?}", rand_id);
+    // Prepare filtering variables
+    let mut filter_stats = FilterStats {
+        remove_ns: true,
+        min_quality: 0.01, // for pileups only (i.e. minimum base error rate)
+        min_coverage: args.min_coverage,
+        min_allele_frequency: args.min_allele_frequency,
+        max_missingness_rate: args.max_missingness_rate_per_locus,
+        pool_sizes: args.pool_sizes.clone(),
+    };
+    // Load genotype data
+    let (mut genotypes_and_phenotypes, _) = if extension_name == "vcf" {
+        load_vcf(
+            &args.fname,
+            &mut filter_stats,
+            &args.fname_out_prefix,
+            &rand_id,
+            &args.n_threads,
+        )
+        .expect("Error loading vcf.")
+    } else if extension_name == "sync" {
+        load_sync(
+            &args.fname,
+            &mut filter_stats,
+            &args.fname_out_prefix,
+            &rand_id,
+            &args.n_threads,
+        )
+        .expect("Error loading sync.")
+    } else {
+        load_geno(
+            &args.fname,
+            &mut filter_stats,
+            &args.fname_out_prefix,
+            &rand_id,
+            &args.n_threads,
+        )
+        .expect("Error loading sync.")
+    };
+    // Define missing data
+    let start = std::time::SystemTime::now();
+    genotypes_and_phenotypes
+        .set_missing_by_depth(
+            &args.min_depth_below_which_are_missing,
+            &args.max_depth_above_which_are_missing,
+        )
+        .expect("Error calling set_missing_by_depth() method within impute().");
+    let end = std::time::SystemTime::now();
+    let duration = end
+        .duration_since(start)
+        .expect("Error measuring the duration of setting missing data within impute().");
+    println!(
+        "Set loci beyond the minimum and maximum depth thresholds to missing: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
+        genotypes_and_phenotypes.coverages.nrows(),
+        genotypes_and_phenotypes.coverages.ncols(),
+        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity via missing_rate() method after setting missing by depth within impute()."),
+        duration.as_secs()
+    );
+    // Filter pools
+    let start = std::time::SystemTime::now();
+    genotypes_and_phenotypes
+        .filter_out_top_missing_pools(&args.frac_top_missing_pools)
+        .expect("Error filtering out top-most missing pools within impute().");
+    let end = std::time::SystemTime::now();
+    let duration = end
+        .duration_since(start)
+        .expect("Error measuring the duration of filtering pools within impute().");
+    println!(
+        "Filtered out sparsest pools: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
+        genotypes_and_phenotypes.coverages.nrows(),
+        genotypes_and_phenotypes.coverages.ncols(),
+        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity via missing_rate() method after filtering pools within impute()."),
+        duration.as_secs()
+    );
+    // Filter loci
+    let start = std::time::SystemTime::now();
+    genotypes_and_phenotypes
+        .filter_out_top_missing_loci(&args.frac_top_missing_loci)
+        .expect("Error filtering out top-most missing loci within impute().");
+    let end = std::time::SystemTime::now();
+    let duration = end
+        .duration_since(start)
+        .expect("Error measuring the duration of filtering loci within impute().");
+    println!(
+        "Filtered out sparsest loci: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
+        genotypes_and_phenotypes.coverages.nrows(),
+        genotypes_and_phenotypes.coverages.ncols(),
+        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity via missing_rate() method after filtering loci within impute()."),
+        duration.as_secs()
+    );
+    // Prepare output file name
+    let fname_out = if args.fname_out_prefix == *"" {
+        args.fname.to_owned() + "-" + &rand_id + "-IMPUTED.csv"
+    } else {
+        args.fname_out_prefix.to_owned() + "-" + &rand_id + "-IMPUTED.csv"
+    };
+    let _ = if args.method == "mean" {
+        println!("###################################################################################################");
+        println!("mvi: mean value imputation");
+        println!("###################################################################################################");
+        impute_mean(
+            genotypes_and_phenotypes,
+            &filter_stats,
+            &args.n_threads,
+            &fname_out,
+        )
+        .expect("Error performing mean value imputation via impute_mean() within impute().")
+    } else {
+        println!("###################################################################################################");
+        println!("aldknni: adaptive linkage disequilibrium (LD)-based k-nearest neighbour imputation of genotype data");
+        println!("###################################################################################################");
+        // Handling NA conversion into Rust's f64:NAN
+        let min_loci_corr = if args.min_loci_corr < 0.0 {
+            f64::NAN
+        } else {
+            args.min_loci_corr
+        };
+        let max_pool_dist = if args.max_pool_dist < 0.0 {
+            f64::NAN
+        } else {
+            args.max_pool_dist
+        };
+        impute_aldknni(
+            genotypes_and_phenotypes,
+            &filter_stats,
+            (
+                &min_loci_corr,
+                &max_pool_dist,
+                &args.min_l_loci,
+                &args.min_k_neighbours,
+                &args.n_reps,
+            ),
+            args.restrict_linked_loci_per_chromosome,
+            &args.n_threads,
+            &fname_out,
+        )
+        .expect("Error performing adaptive LD-kNN imputation via impute_aldknni() within impute().")
+    };
+    println!("{}", fname_out);
+}
+
+// cargo build --release
\ No newline at end of file
diff --git a/src/mvi.rs b/src/mvi.rs
new file mode 100644
index 0000000..aa9ae50
--- /dev/null
+++ b/src/mvi.rs
@@ -0,0 +1,407 @@
+use crate::helpers::*;
+use crate::structs_and_traits::*;
+use ndarray::prelude::*;
+use rand::prelude::IteratorRandom;
+use rand::rngs::StdRng;
+use rand::SeedableRng;
+use std::io;
+
+type SparsitySimulationOutput = (f64, Vec<usize>, Vec<f64>, Vec<Vec<f64>>);
+
+impl GenotypesAndPhenotypes {
+    pub fn mean_imputation(&mut self) -> io::Result<&mut Self> {
+        self.check().expect("Error calling check() method within mean_imputation() method for GenotypesAndPhenotypes struct.");
+        // We are assuming that all non-zero alleles across pools are kept, i.e. biallelic loci have 2 columns, triallelic have 3, and so on.
+        let (n, p) = self.intercept_and_allele_frequencies.dim();
+        let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error defining loci indexes and identities via count_loci() method within mean_imputation() method for GenotypesAndPhenotypes struct.");
+        let l = loci_idx.len() - 1; // less the final position, this is equivalent to the the number of columns of self.coverages
+        for j in 0..l {
+            // Use the indexes of each locus
+            let idx_ini = loci_idx[j];
+            let idx_fin = if j < (l - 1) { loci_idx[j + 1] } else { p };
+            let freqs: Array2<f64> = self
+                .intercept_and_allele_frequencies
+                .slice(s![.., idx_ini..idx_fin])
+                .to_owned();
+            let mean_freqs = mean_axis_ignore_nan(&freqs, 0).expect("Error calculating axis-wise mean ignoring NANs within mean_imputation() method for GenotypesAndPhenotypes struct.");
+            let sum_freqs = mean_freqs.sum();
+            // We need to correct for imputations resulting in a sum of allele frequencies greater or less than 1
+            let mean_freqs = if sum_freqs != 1.0 {
+                mean_freqs.map(|x| x / sum_freqs)
+            } else {
+                mean_freqs
+            };
+            for k in 0..freqs.ncols() {
+                for i in 0..n {
+                    if self.intercept_and_allele_frequencies[(i, idx_ini + k)].is_nan() {
+                        self.intercept_and_allele_frequencies[(i, idx_ini + k)] = mean_freqs[k];
+                    } else {
+                        continue;
+                    };
+                }
+            }
+        }
+        // Set missing coverages to infinity to mark imputed data
+        for j in 0..self.coverages.ncols() {
+            // Mark only the imputed loci, i.e. loci which were not completely missing across all pools
+            let n_non_missing = self.coverages.select(Axis(1), &[j]).fold(0, |sum, &x| {
+                if !x.is_nan() {
+                    sum + 1
+                } else {
+                    sum
+                }
+            });
+            if n_non_missing > 0 {
+                for i in 0..self.coverages.nrows() {
+                    if self.coverages[(i, j)].is_nan() {
+                        self.coverages[(i, j)] = f64::INFINITY
+                    };
+                }
+            }
+        }
+        // println!("self.coverages = {:?}", self.coverages);
+        Ok(self)
+    }
+
+    pub fn simulate_missing(
+        &mut self,
+        loci_idx: &[usize],
+        max_sparsity: &f64,
+        rep: &usize,
+    ) -> io::Result<(&mut Self, SparsitySimulationOutput)> {
+        self.check().expect("Error calling check() method within simulate_missing() method for GenotypesAndPhenotypes struct.");
+        let (n, l) = self.coverages.dim();
+        // let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error defining loci indexes and identities via count_loci() method within simulate_missing() method for GenotypesAndPhenotypes struct.");
+        // Limit max_sparsity to 90%
+        let max_sparsity = if *max_sparsity > 0.9 {
+            0.9
+        } else {
+            *max_sparsity
+        };
+        // Define the number of loci to mask
+        let n_masked = (((n * l) as f64) * max_sparsity).floor() as usize;
+        // Sample random loci
+        // let mut rng = rand::thread_rng();
+        let mut rng = StdRng::seed_from_u64(*rep as u64);
+        let mut vec_masked_loci_idx_tmp = (0..(n * l)).choose_multiple(&mut rng, n_masked);
+        vec_masked_loci_idx_tmp.sort();
+        // Mask and extract the masked information
+        let mut vec_masked_loci_idx: Vec<usize> = vec![];
+        let mut vec_masked_coverages: Vec<f64> = vec![];
+        let mut vec_vec_masked_alleles_freqs: Vec<Vec<f64>> = vec![];
+        let mut idx_counter = 0;
+        let mut idx = 0;
+        'outer: for i in 0..n {
+            for j in 0..l {
+                if vec_masked_loci_idx_tmp[idx_counter] == idx {
+                    if !self.coverages[(i, j)].is_nan() {
+                        // Extract index of the locus
+                        vec_masked_loci_idx.push(idx);
+                        // Extract mask the coverages
+                        vec_masked_coverages.push(self.coverages[(i, j)]);
+                        self.coverages[(i, j)] = f64::NAN;
+                        // Use the indexes of the locus extract masked frequencies and to set missing values to all alleles in the locus
+                        let idx_ini = loci_idx[j];
+                        let idx_fin = loci_idx[j + 1];
+                        let mut vec_freqs: Vec<f64> = vec![];
+                        for k in idx_ini..idx_fin {
+                            vec_freqs.push(self.intercept_and_allele_frequencies[(i, k)]);
+                            self.intercept_and_allele_frequencies[(i, k)] = f64::NAN;
+                        }
+                        vec_vec_masked_alleles_freqs.push(vec_freqs);
+                    }
+                    idx_counter += 1;
+                    if idx_counter == vec_masked_loci_idx_tmp.len() {
+                        break 'outer;
+                    }
+                }
+                idx += 1;
+            }
+        }
+        self.check().expect("Error calling check() method within simulate_missing() method for GenotypesAndPhenotypes struct.");
+        Ok((
+            self,
+            (
+                max_sparsity,
+                vec_masked_loci_idx,
+                vec_masked_coverages,
+                vec_vec_masked_alleles_freqs,
+            ),
+        ))
+    }
+
+    pub fn extract_imputed_mask(
+        &self,
+        loci_idx: &[usize],
+        vec_masked_loci_idx: &[usize],
+    ) -> io::Result<Vec<Vec<f64>>> {
+        let (n, _p) = self.intercept_and_allele_frequencies.dim();
+        let (_n, l) = self.coverages.dim();
+        let mut vec_vec_imputed_mask: Vec<Vec<f64>> = vec![];
+        let mut idx_counter = 0;
+        let mut idx = 0;
+        'outer: for i in 0..n {
+            for j in 0..l {
+                if vec_masked_loci_idx[idx_counter] == idx {
+                    let idx_ini = loci_idx[j];
+                    let idx_fin = loci_idx[j + 1];
+                    let mut vec_freqs: Vec<f64> = vec![];
+                    for k in idx_ini..idx_fin {
+                        vec_freqs.push(self.intercept_and_allele_frequencies[(i, k)]);
+                    }
+                    vec_vec_imputed_mask.push(vec_freqs);
+                    idx_counter += 1;
+                    if idx_counter == vec_masked_loci_idx.len() {
+                        break 'outer;
+                    }
+                }
+                idx += 1;
+            }
+        }
+        Ok(vec_vec_imputed_mask)
+    }
+
+    pub fn estimate_expected_mae_in_mvi(&self) -> io::Result<f64> {
+        let mut genotype_data_for_optimisation = self.clone();
+        let (n, p) = genotype_data_for_optimisation
+            .intercept_and_allele_frequencies
+            .dim();
+        let missing_rate_sim = if (n * p) < 20_000 {
+            0.01
+        } else {
+            10_000.0 / ((n * p) as f64)
+        };
+        // Extract loci indices
+        let (loci_idx, _loci_chr, _loci_pos) = self.count_loci().expect("Error calling count_loci() method within adaptive_ld_knn_imputation() method for GenotypesAndPhenotypes struct.");
+        let (
+            _,
+            (max_sparsity,
+            vec_masked_loci_idx,
+            _vec_masked_coverages,
+            vec_vec_masked_alleles_freqs),
+        ) = genotype_data_for_optimisation
+            .simulate_missing(&loci_idx, &missing_rate_sim, &0)
+            .expect("Error calling simulate_missing() within estimate_expected_mae_in_mvi() method for GenotypesAndPhenotypes struct.");
+        assert_eq!(
+            max_sparsity, missing_rate_sim,
+            "Ooops! Missing unexpected simulated sparsity!"
+        );
+        let _ = genotype_data_for_optimisation.mean_imputation().expect("Error calling mean_imputation() within estimate_expected_mae_in_mvi() method for GenotypesAndPhenotypes struct.");
+        let vec_vec_imputed_mask = genotype_data_for_optimisation
+            .extract_imputed_mask(&loci_idx, &vec_masked_loci_idx)
+            .expect("Error calling extract_imputed_mask() within estimate_expected_mae_in_mvi() method for GenotypesAndPhenotypes struct.");
+        // Compare imputed and expected frequencies
+        let m = vec_vec_masked_alleles_freqs.len(); // total number of loci
+        let mean_absolute_error = if m == 0 {
+            // If no loci were simulated to be missing
+            1.00
+        } else {
+            let mut sum_abs = 0.0;
+            let mut a = 0.0; // total number of alleles across all loci
+            for i in 0..m {
+                let w = vec_vec_masked_alleles_freqs[i].len();
+                for j in 0..w {
+                    if (vec_vec_masked_alleles_freqs[i][j].is_nan())
+                        || (vec_vec_imputed_mask[i][j].is_nan())
+                    {
+                        // Skip if we if masked already missing loci or if we cannot impute because the whole locus is missing
+                        continue;
+                    } else {
+                        sum_abs +=
+                            (vec_vec_masked_alleles_freqs[i][j] - vec_vec_imputed_mask[i][j]).abs();
+                        // (vec_vec_masked_alleles_freqs[i][j] - vec_vec_imputed_mask[i][j]).powf(2.0); // MSE seem to have the same behaviour as MAE
+                        a += 1.00;
+                    }
+                }
+            }
+            if a == 0.0 {
+                1.00
+            } else {
+                sum_abs / a
+            }
+        };
+        Ok(mean_absolute_error)
+    }
+}
+
+// Impute using mean allele frequencies across pools
+pub fn impute_mean(
+    mut genotypes_and_phenotypes: GenotypesAndPhenotypes,
+    filter_stats: &FilterStats,
+    n_threads: &usize,
+    out: &str,
+) -> io::Result<String> {
+    // Estimate predicted imputation accuracy
+    let mae = genotypes_and_phenotypes
+        .estimate_expected_mae_in_mvi()
+        .expect("Error calling estimate_expected_mae_in_mvi() method within impute_mean().");
+    println!("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+    println!(
+        "Expected imputation accuracy in terms of mean absolute error: {}",
+        mae
+    );
+    println!("!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!");
+    let start = std::time::SystemTime::now();
+    genotypes_and_phenotypes
+        .mean_imputation()
+        .expect("Error calling mean_imputation() method within impute_mean().");
+    let end = std::time::SystemTime::now();
+    let duration = end
+        .duration_since(start)
+        .expect("Error measuring the duration of mean value imputation within impute_mean()");
+    println!(
+        "Mean value imputation: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
+        genotypes_and_phenotypes.coverages.nrows(),
+        genotypes_and_phenotypes.coverages.ncols(),
+        genotypes_and_phenotypes
+            .missing_rate()
+            .expect("Error measuring sparsity after mean value imputation within impute_mean()."),
+        duration.as_secs()
+    );
+
+    // println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
+
+    // Remove 100% of the loci with missing data
+    let start = std::time::SystemTime::now();
+    genotypes_and_phenotypes
+        .filter_out_top_missing_loci(&1.00)
+        .expect("Error calling filter_out_top_missing_loci() method within impute_mean().");
+    let end = std::time::SystemTime::now();
+    let duration = end.duration_since(start).expect(
+        "Error measuring the duration of filter_out_top_missing_loci() within impute_mean()",
+    );
+    println!(
+        "Missing data removed, i.e. loci which cannot be imputed because of extreme sparsity: {} pools x {} loci | Missingness: {}% | Duration: {} seconds",
+        genotypes_and_phenotypes.coverages.nrows(),
+        genotypes_and_phenotypes.coverages.ncols(),
+        genotypes_and_phenotypes.missing_rate().expect("Error measuring sparsity after filter_out_top_missing_loci(0) within impute_mean()."),
+        duration.as_secs()
+    );
+    // Output
+    let out = genotypes_and_phenotypes
+        .write_csv(filter_stats, false, out, n_threads)
+        .expect("Error writing the output of mean value imputation within impute_mean().");
+
+    Ok(out)
+}
+
+////////////////////////////////////////////////////////////////////////////////////////////////////////////
+#[cfg(test)]
+mod tests {
+    use super::*;
+    #[test]
+    fn test_mvi() {
+        let file_sync = FileSync {
+            filename: "./tests/test.sync".to_owned(),
+            test: "load".to_owned(),
+        };
+        let file_phen = FilePhen {
+            filename: "./tests/test_pheno.csv".to_owned(),
+            delim: ",".to_owned(),
+            names_column_id: 0,
+            sizes_column_id: 1,
+            trait_values_column_ids: vec![2, 3],
+            format: "default".to_owned(),
+        };
+        let file_sync_phen = *(file_sync, file_phen).lparse().unwrap();
+        let filter_stats = FilterStats {
+            remove_ns: true,
+            min_quality: 0.005,
+            min_coverage: 1,
+            min_allele_frequency: 0.005,
+            max_missingness_rate: 0.0,
+            pool_sizes: vec![20., 20., 20., 20., 20.],
+        };
+        let n_threads = 2;
+        let mut frequencies_and_phenotypes = file_sync_phen
+            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &n_threads)
+            .unwrap();
+        println!(
+            "Before simulating missing data:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        let min_depth_below_which_are_missing = 5.0;
+        let max_depth_above_which_are_missing = 10.0;
+        let _ = frequencies_and_phenotypes
+            .set_missing_by_depth(
+                &min_depth_below_which_are_missing,
+                &max_depth_above_which_are_missing,
+            )
+            .unwrap();
+        println!(
+            "Before imputation:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+        let _ = frequencies_and_phenotypes.mean_imputation().unwrap();
+        println!(
+            "After imputation:\n{:?}",
+            frequencies_and_phenotypes.intercept_and_allele_frequencies
+        );
+
+        let keep_p_minus_1 = false;
+        let _start = std::time::SystemTime::now();
+        let genotypes_and_phenotypes = file_sync_phen
+            .convert_into_genotypes_and_phenotypes(&filter_stats, keep_p_minus_1, &n_threads)
+            .unwrap();
+
+        let outname = impute_mean(
+            genotypes_and_phenotypes,
+            &filter_stats,
+            &n_threads,
+            &"test-impute_mean.csv".to_owned(),
+        )
+        .unwrap();
+        assert_eq!(outname, "test-impute_mean.csv".to_owned()); // Do better!!! Load data - thus working on improving load_table()
+
+        assert_eq!(
+            frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 1)],
+            Array1::from_vec(vec![0.3333333333333333, 0.2, 0.14285714285714285])
+                .mean()
+                .unwrap()
+        );
+        assert_eq!(
+            frequencies_and_phenotypes.intercept_and_allele_frequencies[(1, 1)],
+            Array1::from_vec(vec![0.3333333333333333, 0.2, 0.14285714285714285])
+                .mean()
+                .unwrap()
+        );
+        assert_eq!(
+            frequencies_and_phenotypes.intercept_and_allele_frequencies[(0, 2)],
+            Array1::from_vec(vec![0.6666666666666666, 0.8, 0.8571428571428571])
+                .mean()
+                .unwrap()
+        );
+        assert_eq!(
+            frequencies_and_phenotypes.intercept_and_allele_frequencies[(1, 2)],
+            Array1::from_vec(vec![0.6666666666666666, 0.8, 0.8571428571428571])
+                .mean()
+                .unwrap()
+        );
+        // assert_eq!(0, 1);
+    }
+}
+
+// SYNC=/home/jeff/poolgen/tests/test_REMOVE_ME_BEFORE_PUSHING.sync
+// PHEN=/home/jeff/poolgen/tests/test_REMOVE_ME_BEFORE_PUSHING.csv
+// NCORES=7
+// OUT=/home/jeff/poolgen/tests/test-MEAN_IMPUTE-REMOVE_ME_BEFORE_PUSHING.csv
+// time cargo run -- impute \
+//     --imputation-method "mean" \
+//     -f ${SYNC} \
+//     -p ${PHEN} \
+//     --phen-delim , \
+//     --phen-name-col 0 \
+//     --phen-pool-size-col 1 \
+//     --phen-value-col 2 \
+//     --min-allele-frequency 0.0001 \
+//     --min-coverage 0 \
+//     --min-quality 0.01 \
+//     --max-missingness-rate 0.75 \
+//     --min-depth-set-to-missing 5 \
+//     --window-size-bp 1000000 \
+//     --window-slide-size-bp 1000000 \
+//     --min-loci-per-window 1 \
+//     --min-correlation 0.5 \
+//     --k-neighbours 5 \
+//     --n-threads ${NCORES} \
+//     -o ${OUT}
diff --git a/src/phen.rs b/src/phen.rs
new file mode 100644
index 0000000..9a6d2d8
--- /dev/null
+++ b/src/phen.rs
@@ -0,0 +1,256 @@
+//! Phenotype data parsing from simple delimited files (e.g. csv and tsv) and [GWAlpha.py's Python-esq data structure](https://github.com/aflevel/GWAlpha)
+
+use ndarray::prelude::*;
+use std::fs::File;
+use std::io::{self, prelude::*, BufReader, Error, ErrorKind};
+use std::{str, vec};
+
+use crate::structs_and_traits::*;
+
+impl Parse<Phen> for FilePhen {
+    /// Parse a phenotype file into `Phen` struct containing the `pool_names`, `pool_sizes`, and `phen_matrix`
+    /// Phenotype file formats:
+    /// 1. A simple delimited file (e.g. `csv` and `tsv` extensions) with a column for the individual IDs, and at least one column for the phenotypic values. Header line/s and comments should be prepended by `#`.
+    /// 2. GWAlpha-compatible text file (i.e. `py` extension):
+    /// - *Line 1*: phenotype name
+    /// - *Line 2*: standard deviation of the phenotype across pools or for the entire population
+    /// - *Line 3*: minimum phenotype value
+    /// - *Line 4*: maximum phenotype value
+    /// - *Line 5*: cummulative pool sizes percentiles (e.g. `0.2,0.4,0.6,0.8,1.0`)
+    /// - *Line 6*: phenotype values corresponding to each percentile (e.g. `0.16,0.20,0.23,0.27,0.42`)
+    fn lparse(&self) -> io::Result<Box<Phen>> {
+        let mut pool_names: Vec<String> = vec![];
+        let mut pool_sizes: Vec<f64> = vec![];
+        if self.format == *"default" {
+            ////////////////////
+            // Default format //
+            ////////////////////
+            let filename_phen = self.filename.clone();
+            let delim = self.delim.clone();
+            let names_column_id = self.names_column_id;
+            let sizes_column_id = self.sizes_column_id;
+            let trait_values_column_ids = self.trait_values_column_ids.clone();
+            let k = trait_values_column_ids.len();
+            let mut phen_vec: Vec<f64> = vec![];
+            let file = File::open(filename_phen.clone())
+                .expect(&("Input phenotype file not found: ".to_owned() + &filename_phen[..]));
+            let reader = BufReader::new(file);
+            for l in reader.lines() {
+                let mut line = l.expect("Error parsing the phenotype file within the lparse() method for the FilePhen struct.");
+                // Remove trailing newline character in Unix-like (\n) and Windows (\r)
+                if line.ends_with('\n') {
+                    line.pop();
+                    if line.ends_with('\r') {
+                        line.pop();
+                    }
+                }
+                // Ignore commented-out lines (i.e. '#' => 35)
+                if line.as_bytes()[0] == 35_u8 {
+                    continue;
+                }
+                // Parse the sync line
+                let vec_line = line
+                    .split(&delim[..])
+                    .collect::<Vec<&str>>()
+                    .into_iter()
+                    .map(|x| x.trim()) // remove pesky leading and trailing whitespace
+                    .map(|x| x.to_owned())
+                    .collect::<Vec<String>>();
+                pool_names.push(vec_line[names_column_id].clone());
+                pool_sizes.push(vec_line[sizes_column_id].parse::<f64>().expect(
+                    &("T_T Pool sizes column (column index: ".to_owned()
+                        + &sizes_column_id.to_string()
+                        + ") is not a valid number. Line: "
+                        + &line
+                        + "."),
+                ));
+                for j in 0..k {
+                    if (vec_line[trait_values_column_ids[j]] == *"")
+                        || (vec_line[trait_values_column_ids[j]] == *"NA")
+                        || (vec_line[trait_values_column_ids[j]] == *"NAN")
+                        || (vec_line[trait_values_column_ids[j]] == *"NaN")
+                        || (vec_line[trait_values_column_ids[j]] == *"na")
+                        || (vec_line[trait_values_column_ids[j]] == *"nan")
+                    {
+                        phen_vec.push(f64::NAN)
+                    } else {
+                        phen_vec.push(vec_line[trait_values_column_ids[j]].parse::<f64>()
+                                                            .expect("T_T Error parsing the phenotype file. The trait values specified cannot be casted into float64."))
+                    };
+                }
+            }
+            // Reshape the vector of phenotypes into an nxk matrix
+            let n = phen_vec.len() / k;
+            let mut phen_matrix: Array2<f64> = Array2::from_elem((n, k), 0.0);
+            for i in 0..n {
+                for j in 0..k {
+                    phen_matrix[(i, j)] = phen_vec[(i * k) + j]
+                }
+            }
+            Ok(Box::new(Phen {
+                pool_names,
+                pool_sizes,
+                phen_matrix,
+            }))
+        } else if self.format == *"gwalpha_fmt" {
+            ////////////////////
+            // GWAlpha format //
+            ////////////////////
+            let filename_phen = self.filename.clone();
+            let file = File::open(filename_phen.clone())
+                .expect(&("Input phenotype file not found: ".to_owned() + &filename_phen[..]));
+            let reader = BufReader::new(file);
+            let mut all_lines: Vec<String> = vec![];
+            for line in reader.lines() {
+                all_lines.push(line.expect("T_T Phenotype file in GWAlpha format is missing some lines, e.g. Pheno_name, sig, MIN, MAX, perc and/or q."));
+            }
+            let _name = all_lines[0].split('=').collect::<Vec<&str>>()[1]
+                .replace(';', "")
+                .trim()
+                .to_string();
+            let sig = all_lines[1].split('=').collect::<Vec<&str>>()[1].replace(';', "").trim().parse::<f64>().expect("T_T Error parsing the standard deviation of the trait as f64 in the GWAlpha formatted phenotype file.");
+            let min = all_lines[2].split('=').collect::<Vec<&str>>()[1].replace(';', "").trim().parse::<f64>().expect("T_T Error parsing the minimum value of the trait as f64 in the GWAlpha formatted phenotype file.");
+            let max = all_lines[3].split('=').collect::<Vec<&str>>()[1].replace(';', "").trim().parse::<f64>().expect("T_T Error parsing the maximum value of the trait as f64 in the GWAlpha formatted phenotype file.");
+            let perc = all_lines[4].split('=').collect::<Vec<&str>>()[1].replace([';', '[', ']'], "").trim().to_string()
+                                             .split(',').collect::<Vec<&str>>().into_iter().map(|x| x.trim().to_string())
+                                             .map(|x| x.parse::<f64>().expect("T_T Error parsing the pool percentiles as f64 in the GWAlpha formatted phenotype file."))
+                                             .collect::<Vec<f64>>();
+            let q = all_lines[5].split('=').collect::<Vec<&str>>()[1].replace([';', '[', ']'], "").trim().to_string()
+                                          .split(',').collect::<Vec<&str>>().into_iter().map(|x| x.trim().to_string())
+                                          .map(|x| x.parse::<f64>().expect("T_T Error parsing the pool quantiles as f64 in the GWAlpha formatted phenotype file."))
+                                          .collect::<Vec<f64>>();
+            // For ML
+            let mut _perc0 = perc.clone();
+            _perc0.push(1.0);
+            let perc0: Array1<f64> = Array1::from_vec(_perc0);
+            let mut _perc1 = vec![0.0];
+            _perc1.append(&mut perc.clone());
+            let perc1: Array1<f64> = Array1::from_vec(_perc1);
+            let bins = perc0 - perc1;
+            let mut n = bins.len();
+            if n < 3 {
+                n = 3;
+            }
+            // For LS
+            let mut q_prime: Array1<f64> = Array1::from_elem(n, 0.0);
+            for i in 0..q.len() {
+                q_prime[i + 1] = (q[i] - min) / (max - min);
+            }
+            let mut phen_matrix = Array2::from_elem((n, 3), f64::NEG_INFINITY);
+            for i in 0..bins.len() {
+                phen_matrix[(i, 0)] = bins[i];
+                phen_matrix[(i, 1)] = q_prime[i];
+            }
+            phen_matrix[(0, 2)] = sig;
+            phen_matrix[(1, 2)] = min;
+            phen_matrix[(2, 2)] = max;
+            // Since, GWAlpha's phenotype data does not contain pool names, we will be just naming the pools with consecutive numbers, i.e.:
+            for i in 0..n {
+                pool_names.push("pool-".to_owned() + &i.to_string()[..]);
+            }
+            return Ok(Box::new(Phen {
+                pool_names,
+                pool_sizes: bins.iter().copied().collect::<Vec<f64>>(), // pool sizes, i.e. bins in the GWAlpha.py format is found in phen_matrix
+                phen_matrix,
+            }));
+        } else {
+            return Err(Error::new(
+                ErrorKind::Other,
+                "Invalid phenotype format. Please select: 'default' or 'gwalpha_fmt'",
+            ));
+        }
+    }
+}
+
+impl Parse<FileSyncPhen> for (FileSync, FilePhen) {
+    /// Combine the `Phen` struct with the filename of the genotype file in `sync` format, and include the name of the `test` or analysis to perform
+    fn lparse(&self) -> io::Result<Box<FileSyncPhen>> {
+        let filename_sync = self.0.filename.clone();
+        let test = self.0.test.clone();
+        if self.1.format == *"default" {
+            ////////////////////
+            // Default format //
+            ////////////////////
+            let phen = self.1.lparse().expect("Error calling lparse() within the lparse() method for the (FileSync, FilePhen) struct.");
+            Ok(Box::new(FileSyncPhen {
+                filename_sync,
+                pool_names: phen.pool_names,
+                pool_sizes: phen.pool_sizes,
+                phen_matrix: phen.phen_matrix,
+                test,
+            }))
+        } else if self.1.format == *"gwalpha_fmt" {
+            ////////////////////
+            // GWAlpha format //
+            ////////////////////
+            let phen = self.1.lparse().expect("Error calling lparse() within the lparse() method for the (FileSync, FilePhen) struct.");
+            return Ok(Box::new(FileSyncPhen {
+                filename_sync,
+                pool_names: phen.pool_names,
+                pool_sizes: vec![f64::NAN], // pool sizes, i.e. bins in the GWAlpha.py format is found in phen_matrix
+                phen_matrix: phen.phen_matrix,
+                test,
+            }));
+        } else {
+            return Err(Error::new(
+                ErrorKind::Other,
+                "Invalid phenotype format. Please select: 'default' or 'gwalpha_fmt'",
+            ));
+        }
+    }
+}
+
+////////////////////////////////////////////////////////////////////////////////////////////////////////////
+#[cfg(test)]
+mod tests {
+    use super::*;
+    #[test]
+    fn test_phen() {
+        let file_phen = FilePhen {
+            filename: "./tests/test_pheno.csv".to_owned(),
+            delim: ",".to_owned(),
+            names_column_id: 0,
+            sizes_column_id: 1,
+            trait_values_column_ids: vec![2, 3],
+            format: "default".to_owned(),
+        };
+        assert_eq!(
+            *file_phen.lparse().unwrap(),
+            Phen {
+                pool_names: vec!["G1", "G2", "G3", "G4", "G5"]
+                    .into_iter()
+                    .map(|x| x.to_owned())
+                    .collect::<Vec<String>>(),
+                pool_sizes: vec![20.0, 20.0, 20.0, 20.0, 20.0],
+                phen_matrix: Array2::from_shape_vec(
+                    (2, 5),
+                    vec![0.1, 0.3, 0.5, 0.7, 0.9, 83.2, 75.3, 49.8, 23.9, 12.0],
+                )
+                .unwrap()
+                .reversed_axes(),
+            }
+        );
+        let file_sync = FileSync {
+            filename: "./tests/test.sync".to_owned(),
+            test: "".to_owned(),
+        };
+        assert_eq!(
+            *(file_sync, file_phen).lparse().unwrap(),
+            FileSyncPhen {
+                filename_sync: "./tests/test.sync".to_owned(),
+                pool_names: vec!["G1", "G2", "G3", "G4", "G5"]
+                    .into_iter()
+                    .map(|x| x.to_owned())
+                    .collect::<Vec<String>>(),
+                pool_sizes: vec![20.0, 20.0, 20.0, 20.0, 20.0],
+                phen_matrix: Array2::from_shape_vec(
+                    (2, 5),
+                    vec![0.1, 0.3, 0.5, 0.7, 0.9, 83.2, 75.3, 49.8, 23.9, 12.0],
+                )
+                .unwrap()
+                .reversed_axes(),
+                test: "".to_owned(),
+            }
+        );
+    }
+}
diff --git a/src/structs_and_traits.rs b/src/structs_and_traits.rs
new file mode 100644
index 0000000..200fdb9
--- /dev/null
+++ b/src/structs_and_traits.rs
@@ -0,0 +1,222 @@
+//! Structs and Traits
+
+use ndarray::prelude::*;
+use std::io;
+
+////////////////////////////////////////////////////////////////////////////////
+/// # STRUCTS
+////////////////////////////////////////////////////////////////////////////////
+
+/// The alternative entry point genotype file struct, i.e. describing the genotype data in vcf format
+/// Note: Make sure that the annotate the vcf file with allele depths, e.g. `bcftools mpileup -a AD ...`
+/// - `filename` - filename of the vcf file (`*.vcf` or `*.vcf.gz`)
+#[derive(Debug, Clone)]
+pub struct FileVcf {
+    pub filename: String,
+}
+
+/// The main genotype file struct used for most of the analyses
+/// - `filename` - filename of the synchronised pileup file (`*.sync`)
+/// - `test` - name of statistical test, i.e. "sync2csv", "fisher_exact_test", "chisq_test", "fst", "heterozygosity, "pearson_corr", "ols_iter", "ols_iter_with_kinship", "mle_iter", "mle_iter_with_kinship", "gwalpha", "genomic_prediction_cross_validation""
+#[derive(Debug, Clone)]
+pub struct FileSync {
+    pub filename: String,
+    pub test: String,
+}
+
+/// The simple genotype file which is the only output format at the moment
+/// - `filename` - filename of the tab-delimited genotype file (*.txt)
+#[derive(Debug, Clone)]
+pub struct FileGeno {
+    pub filename: String,
+}
+
+/// Filename of the phenotype file which can be a simple delimited file (e.g. csv and tsv) or a specialised GWAlpha phenotype infomation file in a python file.
+/// - `filename` - filename of the phenotype file (e.g. `*.csv`, `*.txt`, `*.tsv`, or `*.py`)
+/// - `delim` - string delimiter of the phenotype file (e.g. `","` or `"\t"`)
+/// - `names_column_id` - index of the column containing the names of the pools or populations
+/// - `sizes_column_id` - index of the column contating the sizes of each pool or population
+/// - `trait_values_column_ids` - vector of indexes corresponding to the column containing the trait values to be included in the analyses (Note that multi-trait analyese may not be available to all analyses types)
+/// - `format` - string defining the format of the phenotype file as `default` for simple delimited file or `gwalpha_fmt` for GWAlpha-required format (for back-compatibility with github.com/aflevel/GWAlpha/GWAlpha.py)
+#[derive(Debug, Clone)]
+pub struct FilePhen {
+    pub filename: String,
+    pub delim: String,
+    pub names_column_id: usize,
+    pub sizes_column_id: usize,
+    pub trait_values_column_ids: Vec<usize>,
+    pub format: String,
+}
+
+/// Phenotype data including the names of the pools, the size of each pool, and the trait values
+#[derive(Debug, Clone, PartialEq)]
+pub struct Phen {
+    pub pool_names: Vec<String>,
+    pub pool_sizes: Vec<f64>,
+    pub phen_matrix: Array2<f64>,
+}
+
+/// Filename of the synchronised pileup file and its corresponding phenotype data
+#[derive(Debug, Clone, PartialEq)]
+pub struct FileSyncPhen {
+    pub filename_sync: String,
+    pub pool_names: Vec<String>,
+    pub pool_sizes: Vec<f64>,
+    pub phen_matrix: Array2<f64>,
+    pub test: String,
+}
+
+/// Locus and allele filtering settings
+#[derive(Debug, Clone)]
+pub struct FilterStats {
+    pub remove_ns: bool,
+    pub min_quality: f64,
+    pub min_coverage: u64,
+    pub min_allele_frequency: f64,
+    pub max_missingness_rate: f64,
+    pub pool_sizes: Vec<f64>,
+}
+
+/// A line of a vcf file corresponding to a single locus across all the pools
+/// We are interested in extracting allele counts.
+/// We are not interested in the genotype calls and their corresponding likelihoods.
+#[derive(Debug, Clone, PartialEq)]
+pub struct VcfLine {
+    pub chromosome: String,             // chromosome or scaffold name
+    pub position: u64,                  // position in number of bases
+    pub reference_allele: char,         // reference allele
+    pub alternative_alleles: Vec<char>, // vector of alternative alleles
+    pub allele_depths: Vec<Vec<u64>>, // across samples average utf8 base quality codes which can be transformed into bases error rate as 10^(-(u8 - 33)/10)
+}
+
+/// Allele counts at a locus across pools
+#[derive(Debug, Clone, PartialEq)]
+pub struct LocusCounts {
+    pub chromosome: String,
+    pub position: u64,
+    pub alleles_vector: Vec<String>,
+    pub matrix: Array2<u64>, // n pools x p alleles
+}
+
+// Struct of allele frequencies to convert reads into syncx
+// #[derive(Debug, Clone, PartialEq, PartialOrd)]
+#[derive(Debug, Clone, PartialEq)]
+pub struct LocusFrequencies {
+    pub chromosome: String,
+    pub position: u64,
+    pub alleles_vector: Vec<String>,
+    pub matrix: Array2<f64>, // n pools x p alleles
+}
+
+// Struct of allele counts and phenotypes per pool
+#[derive(Debug, Clone)]
+pub struct LocusCountsAndPhenotypes {
+    pub locus_counts: LocusCounts,
+    pub phenotypes: Array2<f64>, // n pools x k traits
+    pub pool_names: Vec<String>,
+}
+
+// Struct of allele frequencies and phenotypes for genomic prediction
+#[derive(Debug, Clone)]
+pub struct GenotypesAndPhenotypes {
+    pub chromosome: Vec<String>,                       // 1 + p
+    pub position: Vec<u64>,                            // 1 + p
+    pub allele: Vec<String>,                           // 1 + p
+    pub intercept_and_allele_frequencies: Array2<f64>, // n pools x 1 + p alleles across loci
+    pub phenotypes: Array2<f64>,                       // n pools x k traits
+    pub pool_names: Vec<String>,                       // n
+    pub coverages: Array2<f64>,                        // n pools x m loci
+}
+
+// Struct of parameters chosen to identify linked loci and nearest neighbours
+#[derive(Debug, Clone)]
+pub struct ParametersOfLinkedLociAndNearestNeighbours {
+    pub min_loci_corr: f64,
+    pub max_pool_dist: f64,
+    pub l_linked_loci: f64,
+    pub k_nearest_neighbours: f64,
+}
+
+////////////////////////////////////////////////////////////////////////////////
+/// # TRAITS
+////////////////////////////////////////////////////////////////////////////////
+
+pub trait CheckStruct {
+    fn check(&self) -> io::Result<()>;
+}
+
+pub trait Count {
+    fn count_loci(&self) -> io::Result<(Vec<usize>, Vec<String>, Vec<u64>)>;
+}
+
+pub trait Parse<T> {
+    fn lparse(&self) -> io::Result<Box<T>>;
+}
+
+pub trait Filter {
+    fn to_counts(&self) -> io::Result<Box<LocusCounts>>;
+    fn to_frequencies(&self) -> io::Result<Box<LocusFrequencies>>;
+    fn filter(&mut self, filter_stats: &FilterStats) -> io::Result<&mut Self>;
+}
+
+pub trait Sort {
+    fn sort_by_allele_freq(&mut self, decreasing: bool) -> io::Result<&mut Self>;
+}
+
+pub trait RemoveMissing {
+    fn remove_missing(&mut self) -> io::Result<&mut Self>;
+}
+
+pub trait ChunkyReadAnalyseWrite<T, F> {
+    fn per_chunk(
+        &self,
+        start: &u64,
+        end: &u64,
+        outname_ndigits: &usize,
+        filter_stats: &FilterStats,
+        function: F,
+    ) -> io::Result<String>
+    where
+        F: Fn(&mut T, &FilterStats) -> Option<String>;
+    fn read_analyse_write(
+        &self,
+        filter_stats: &FilterStats,
+        out: &str,
+        n_threads: &usize,
+        function: F,
+    ) -> io::Result<String>
+    where
+        F: Fn(&mut T, &FilterStats) -> Option<String>;
+}
+
+pub trait LoadAll {
+    fn per_chunk_load(
+        &self,
+        start: &u64,
+        end: &u64,
+        filter_stats: &FilterStats,
+        keep_n_minus_1: bool,
+    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)>; // Allele frequencies and counts across pools and alleles per locus
+    fn load(
+        &self,
+        filter_stats: &FilterStats,
+        keep_n_minus_1: bool,
+        n_threads: &usize,
+    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)>; // Allele frequencies and counts across pools and alleles per locus
+    fn convert_into_genotypes_and_phenotypes(
+        &self,
+        filter_stats: &FilterStats,
+        keep_n_minus_1: bool,
+        n_threads: &usize,
+    ) -> io::Result<GenotypesAndPhenotypes>;
+}
+
+pub trait SaveCsv {
+    fn write_csv(
+        &self,
+        filter_stats: &FilterStats,
+        keep_p_minus_1: bool,
+        out: &str,
+        n_threads: &usize,
+    ) -> io::Result<String>;
+}
diff --git a/src/sync.rs b/src/sync.rs
new file mode 100644
index 0000000..2b4808c
--- /dev/null
+++ b/src/sync.rs
@@ -0,0 +1,1633 @@
+use ndarray::prelude::*;
+use std::fs::{File, OpenOptions};
+use std::io::{self, prelude::*, BufReader, Error, ErrorKind, SeekFrom};
+use std::str;
+use std::sync::{Arc, Mutex};
+use std::time::{SystemTime, UNIX_EPOCH};
+
+use crate::helpers::*;
+use crate::structs_and_traits::*;
+
+impl CheckStruct for LocusCounts {
+    fn check(&self) -> io::Result<()> {
+        let (_n, p) = self.matrix.dim();
+        let a = self.alleles_vector.len();
+        match p == a {
+            true => Ok(()),
+            false => {
+                let locus = [self.chromosome.clone(), self.position.to_string()].join("-");
+                Err(Error::new(ErrorKind::Other, locus + " ::: LocusCounts error: the counts matrix does not have the same the number columns as the number of alleles."))
+            }
+        }
+    }
+}
+
+impl CheckStruct for LocusFrequencies {
+    fn check(&self) -> io::Result<()> {
+        let (_n, p) = self.matrix.dim();
+        let a = self.alleles_vector.len();
+        match p == a {
+            true => Ok(()),
+            false => {
+                let locus = [self.chromosome.clone(), self.position.to_string()].join("-");
+                Err(Error::new(ErrorKind::Other, locus + " ::: LocusFrequencies error: the frequencies matrix does not have the same the number columns as the number of alleles."))
+            }
+        }
+    }
+}
+
+impl CheckStruct for LocusCountsAndPhenotypes {
+    fn check(&self) -> io::Result<()> {
+        self.locus_counts.check().expect("Error checking locus counts within check() method for LocusCountsAndPhenotypes struct.");
+        let (n, _p) = self.locus_counts.matrix.dim();
+        let (n_, _k) = self.phenotypes.dim();
+        let n__ = self.pool_names.len();
+        match (n == n_) && (n_ == n__) {
+            true => Ok(()),
+            false => {
+                let locus = [
+                    self.locus_counts.chromosome.clone(),
+                    self.locus_counts.position.to_string(),
+                ]
+                .join("-");
+                Err(Error::new(ErrorKind::Other, locus + " ::: LocusCountsAndPhenotypes error: the number of pools are inconsistent in the locus counts, and/or phenotypes matrix and/or pool names."))
+            }
+        }
+    }
+}
+
+impl CheckStruct for GenotypesAndPhenotypes {
+    fn check(&self) -> io::Result<()> {
+        let p = self.chromosome.len();
+        let p_ = self.position.len();
+        let (n, p__) = self.intercept_and_allele_frequencies.dim();
+        let (n_, _k) = self.phenotypes.dim();
+        let n__ = self.pool_names.len();
+        let (n___, l) = self.coverages.dim();
+        match (p == p_) && (p_ == p__) && (n == n_) && (n_ == n__) && (n__ == n___) && (l <= p) {
+            true => Ok(()),
+            false => Err(Error::new(ErrorKind::Other, "GenotypesAndPhenotypes: there are at least 1 mismatch in the number of pools and loci."))
+        }
+    }
+}
+
+impl Count for GenotypesAndPhenotypes {
+    fn count_loci(&self) -> io::Result<(Vec<usize>, Vec<String>, Vec<u64>)> {
+        let (_, p) = self.intercept_and_allele_frequencies.dim();
+        assert_eq!(p, self.chromosome.len(), "The number of entries in the 'chromosome' field and the total number of loci are incompatible. Please check the 'intercept_and_allele_frequencies' and 'chromosome' fields of 'GenotypesAndPhenotypes' struct.");
+        assert_eq!(p, self.position.len(), "The number of entries in the 'position' field and the total number of loci are incompatible. Please check the 'intercept_and_allele_frequencies' and 'chromosome' fields of 'GenotypesAndPhenotypes' struct.");
+        // Count the number of loci (Note: assumes the loci are sorted) and extract the loci coordinates
+        let mut loci_idx: Vec<usize> = vec![];
+        let mut loci_chr: Vec<String> = vec![];
+        let mut loci_pos: Vec<u64> = vec![];
+        for i in 1..p {
+            // excludes the intercept
+            if (self.chromosome[i - 1] != self.chromosome[i])
+                || (self.position[i - 1] != self.position[i])
+            {
+                loci_idx.push(i);
+                loci_chr.push(self.chromosome[i].to_owned());
+                loci_pos.push(self.position[i]);
+            }
+        }
+        loci_idx.push(p); // last allele of the last locus
+        loci_chr.push(self.chromosome.last().expect("Error accessing the last element of self.chromosome within the count_loci() method for GenotypesAndPhenotypes struct.").to_owned()); // last allele of the last locus
+        loci_pos.push(self.position.last().expect("Error accessing the last element of self.position within the count_loci() method for GenotypesAndPhenotypes struct.").to_owned()); // last allele of the last locus
+        let l = loci_idx.len();
+        assert_eq!(l-1, self.coverages.ncols(), "The number of loci with coverage information and the total number of loci are incompatible. You may have duplicate loci in the input genotype file (vcf, sync, or txt). Please check the 'intercept_and_allele_frequencies' and 'coverages' fields of 'GenotypesAndPhenotypes' struct.");
+        Ok((loci_idx, loci_chr, loci_pos))
+    }
+}
+
+impl Parse<LocusCounts> for String {
+    // Parse a line of pileup into PileupLine struct
+    fn lparse(&self) -> io::Result<Box<LocusCounts>> {
+        // Remove trailing newline character in Unix-like (\n) and Windows (\r)
+        let mut line = self.clone();
+        if line.ends_with('\n') {
+            line.pop();
+            if line.ends_with('\r') {
+                line.pop();
+            }
+        }
+        // Ignore commented-out lines (i.e. '#' => 35)
+        if line.as_bytes()[0] == 35_u8 {
+            return Err(Error::new(ErrorKind::Other, "Commented out line"));
+        }
+        // Parse the sync line
+        let vec_line = line
+            .split('\t')
+            .collect::<Vec<&str>>()
+            .into_iter()
+            .map(|x| x.to_owned())
+            .collect::<Vec<String>>();
+        let n: usize = vec_line.len() - 3;
+        let p: usize = 6;
+        let chromosome = vec_line[0].to_owned();
+        let position = match vec_line[1].parse::<u64>() {
+            Ok(x) => x,
+            Err(_) => {
+                return Err(Error::new(
+                    ErrorKind::Other,
+                    "Please check format of the file: position is not and integer.",
+                ))
+            }
+        };
+        let alleles_vector = vec!["A", "T", "C", "G", "N", "D"]
+            .into_iter()
+            .map(|x| x.to_owned())
+            .collect::<Vec<String>>();
+        // Read the allele counts into the counts matrix
+        let mut matrix: Array2<u64> = Array2::from_elem((n, p), 0);
+        let mut counts: Vec<u64>;
+        for i in 0..n {
+            counts = vec_line[i+3].split(':')
+                                .map(|x| x.to_string().parse::<u64>().expect("Please check the input sync file as the allele counts are not valid integers."))
+                                .collect::<Vec<u64>>();
+            for j in 0..p {
+                matrix[(i, j)] = counts[j];
+            }
+        }
+        Ok(Box::new(LocusCounts {
+            chromosome,
+            position,
+            alleles_vector,
+            matrix, // n pools x 6 alleles
+        }))
+    }
+}
+
+impl Filter for LocusCounts {
+    // PileupLine to AlleleCounts
+    fn to_counts(&self) -> io::Result<Box<LocusCounts>> {
+        let out = self.clone();
+        Ok(Box::new(out))
+    }
+
+    // PileupLine to AlleleFrequencies
+    fn to_frequencies(&self) -> io::Result<Box<LocusFrequencies>> {
+        let n = self.matrix.nrows();
+        let p = self.matrix.ncols();
+        // let row_sums = self.matrix.sum_axis(Axis(1)); // summation across the columns which means sum of all elements per row
+        let row_sums = self.matrix.map_axis(Axis(1), |r| {
+            r.map(|&x| x as f64)
+                .iter()
+                .filter(|&&x| !x.is_nan())
+                .fold(0.0, |sum, &x| sum + x)
+        }); // summation across the columns which means sum of all elements per row while ignoring NANs!
+        let mut matrix: Array2<f64> = Array2::from_elem((n, p), 0.0_f64);
+        for i in 0..n {
+            for j in 0..p {
+                matrix[(i, j)] = if row_sums[i] == 0.0 {
+                    f64::NAN
+                } else {
+                    self.matrix[(i, j)] as f64 / row_sums[i]
+                };
+            }
+        }
+        Ok(Box::new(LocusFrequencies {
+            chromosome: self.chromosome.clone(),
+            position: self.position,
+            alleles_vector: self.alleles_vector.clone(),
+            matrix,
+        }))
+    }
+
+    // Filter PileupLine by minimum coverage, minimum quality
+    fn filter(&mut self, filter_stats: &FilterStats) -> io::Result<&mut Self> {
+        // Cannot filter by base qualities as this information is lost and we are assuming this has been performed during pileup to sync conversion
+        // Preliminary check of the structure format
+        self.check()
+            .expect("Error calling check() within filter() method for LocusCounts struct.");
+        // Remove Ns
+        if filter_stats.remove_ns {
+            let i = match self
+                .alleles_vector
+                .iter()
+                .position(|x| (x == &"N".to_owned()) || (x == &"n".to_owned()))
+            {
+                Some(x) => x as i32,
+                None => -1,
+            };
+            if i != -1 {
+                self.alleles_vector.remove(i as usize);
+                self.matrix.remove_index(Axis(1), i as usize);
+            }
+        }
+        // println!("self={:?}", self);
+        // Filter by minimum coverage
+        // Summation across the columns which means sum of all elements per row while ignoring NANs!
+        let sum_coverage = self.matrix.map_axis(Axis(1), |r| {
+            r.map(|&x| x as f64)
+                .iter()
+                .filter(|&&x| !x.is_nan())
+                .fold(0.0, |sum, &x| sum + x)
+        });
+        let min_sum_coverage =
+            sum_coverage
+                .iter()
+                .fold(sum_coverage[0], |min, &x| if x < min { x } else { min });
+        if min_sum_coverage < filter_stats.min_coverage as f64 {
+            return Err(Error::new(ErrorKind::Other, "Filtered out."));
+        }
+        // // TODO: convert loci failing the minimum coverage threshold into missing instead of omitting the entire locus
+        // for i in 0..self.matrix.nrows() {
+        //     if sum_coverage[i] < filter_stats.min_coverage as f64 {
+        //         for j in 0..self.matrix.ncols() {
+        //             self.matrix[(i, j)] = f64::NAN as u64;
+        //         }
+        //     }
+        // }
+        // Filter by minimum allele frequency
+        // Before anything else, we clone matrix of allele counts
+        let mut matrix = self.matrix.clone();
+        //// First convert allele counts into frequencies
+        let mut allele_frequencies = match self.to_frequencies() {
+            Ok(x) => x,
+            Err(_) => {
+                return Err(Error::new(
+                    ErrorKind::Other,
+                    "Cannot convert locus counts to locus frequencies.",
+                ))
+            }
+        };
+        //// Next account for pool sizes to get the proper minimum allele frequency across all pools
+        let n = allele_frequencies.matrix.nrows();
+        let mut p = allele_frequencies.matrix.ncols();
+        assert!(
+            n == filter_stats.pool_sizes.len(),
+            "Please make that the number of pools and the pool sizes in FilterStats match."
+        );
+        let mut q: f64;
+        let mut j: usize = 0;
+        while j < p {
+            q = 0.0;
+            for i in 0..n {
+                q += match allele_frequencies.matrix[(i, j)].is_nan() {
+                    true => 0.0,
+                    false => {
+                        allele_frequencies.matrix[(i, j)]
+                            * (filter_stats.pool_sizes[i]
+                                / filter_stats.pool_sizes.iter().sum::<f64>())
+                    }
+                };
+            }
+            if (q < filter_stats.min_allele_frequency)
+                || (q > (1.00 - filter_stats.min_allele_frequency))
+            {
+                allele_frequencies.matrix.remove_index(Axis(1), j);
+                matrix.remove_index(Axis(1), j);
+                self.alleles_vector.remove(j);
+                p -= 1;
+            } else {
+                j += 1;
+            }
+        }
+        // Check if all alleles have failed the minimum allele frequency, i.e. the locus has been filtered out
+        if p < 2 {
+            return Err(Error::new(ErrorKind::Other, "Filtered out."));
+        }
+        // Filter out if the locus is missing across all pools using the first allele where if the locus is missing then all
+        let (n, _p) = allele_frequencies.matrix.dim();
+        let n_missing_across_pools = allele_frequencies
+            .matrix
+            .slice(s![.., 0])
+            .fold(0, |sum, &x| if x.is_nan() { sum + 1 } else { sum });
+        if n_missing_across_pools == n {
+            return Err(Error::new(ErrorKind::Other, "Filtered out."));
+        }
+        // Filter-out the locus if the rate of missingness, i.e. the fraction of the pools missing coverage of the current locus is below the minimum threshold
+        if (n_missing_across_pools as f64 / n as f64) > filter_stats.max_missingness_rate {
+            return Err(Error::new(ErrorKind::Other, "Filtered out."));
+        }
+        // Return the locus if it passed all the filtering steps
+        self.matrix = matrix;
+        Ok(self)
+    }
+}
+
+impl Filter for LocusFrequencies {
+    // PileupLine to AlleleCounts
+    fn to_counts(&self) -> io::Result<Box<LocusCounts>> {
+        let n = self.matrix.nrows();
+        let p = self.matrix.ncols();
+        let mut matrix: Array2<u64> = Array2::from_elem((n, p), 0);
+        let mut max_n: f64;
+        for i in 0..n {
+            let row = self.matrix.row(i);
+            let min = row
+                .iter()
+                .filter(|&&x| x != 0.0)
+                .fold(1.0, |min, &x| if x < min { x } else { min });
+            if min == 0.0 {
+                return Err(Error::new(
+                    ErrorKind::Other,
+                    "At least one of the pools have no coverage.",
+                ));
+            }
+            max_n = 1.00 / min;
+            for j in 0..p {
+                matrix[(i, j)] = (max_n * self.matrix[(i, j)]).round() as u64;
+            }
+        }
+        Ok(Box::new(LocusCounts {
+            chromosome: self.chromosome.clone(),
+            position: self.position,
+            alleles_vector: self.alleles_vector.clone(),
+            matrix,
+        }))
+    }
+
+    // PileupLine to AlleleFrequencies
+    fn to_frequencies(&self) -> io::Result<Box<LocusFrequencies>> {
+        // Recompute the frequencies using frequencies when the number of colulmns or one or more alleles have been filtered out/removed
+        let n = self.matrix.nrows();
+        let p = self.matrix.ncols();
+        // let row_sums = self.matrix.sum_axis(Axis(1)); // summation across the columns which means sum of all elements per row
+        let row_sums = self.matrix.map_axis(Axis(1), |r| {
+            r.iter()
+                .filter(|&&x| !x.is_nan())
+                .fold(0.0, |sum, &x| sum + x)
+        }); // summation across the columns which means sum of all elements per row while ignoring NANs!
+            // // Make sure all pools have been convered
+            // if row_sums
+            //     .iter()
+            //     .fold(row_sums[0], |min, &x| if x < min { x } else { min })
+            //     == 0.0
+            // {
+            //     return Err(Error::new(
+            //         ErrorKind::Other,
+            //         "At least one pool did not have coverage.",
+            //     ));
+            // }
+        let mut matrix: Array2<f64> = Array2::from_elem((n, p), 0.0_f64);
+        for i in 0..n {
+            for j in 0..p {
+                matrix[(i, j)] = if row_sums[i] == 0.0 {
+                    f64::NAN
+                } else {
+                    self.matrix[(i, j)] / row_sums[i]
+                };
+            }
+        }
+        Ok(Box::new(LocusFrequencies {
+            chromosome: self.chromosome.clone(),
+            position: self.position,
+            alleles_vector: self.alleles_vector.clone(),
+            matrix,
+        }))
+    }
+
+    // Filter PileupLine by minimum coverage, minimum quality
+    fn filter(&mut self, filter_stats: &FilterStats) -> io::Result<&mut Self> {
+        // Cannot filter by base qualities as this information is lost and we are assuming this has been performed during pileup to sync conversion
+        // Also, cannot filter by minimum coverage as that data is lost from counts to frequencies conversion
+        // Preliminary check of the structure format
+        self.check()
+            .expect("Error calling check() within filter() method for LocusFrequencies struct.");
+        // Remove Ns
+        if filter_stats.remove_ns {
+            let i = match self
+                .alleles_vector
+                .iter()
+                .position(|x| (x == &"N".to_owned()) || (x == &"n".to_owned()))
+            {
+                Some(x) => x as i32,
+                None => -1,
+            };
+            if i != -1 {
+                self.alleles_vector.remove(i as usize);
+                self.matrix.remove_index(Axis(1), i as usize);
+            }
+        }
+        // println!("self={:?}", self);
+        // Recompute frequencies after removing Ns
+        let recomputed_self = match self.to_frequencies() {
+            Ok(x) => x,
+            Err(_) => {
+                return Err(Error::new(
+                    ErrorKind::Other,
+                    "T_T Cannot convert locus counts to locus frequencies.",
+                ))
+            }
+        };
+        self.alleles_vector = recomputed_self.alleles_vector;
+        self.matrix = recomputed_self.matrix;
+        // Filter by minimum allele frequency
+        // Before anything else, we clone matrix of allele frequencies
+        let mut matrix = self.matrix.clone();
+        //// First convert allele counts into frequencies
+        let mut allele_frequencies = match self.to_frequencies() {
+            Ok(x) => x,
+            Err(_) => {
+                return Err(Error::new(
+                    ErrorKind::Other,
+                    "Cannot convert locus counts to locus frequencies.",
+                ))
+            }
+        };
+        //// Next account for pool sizes to get the proper minmum allele frequency across all pools
+        let n = allele_frequencies.matrix.nrows();
+        let p_ = allele_frequencies.matrix.ncols();
+        let mut p = p_;
+        let mut q: f64;
+        let mut j: usize = 0;
+        while j < p {
+            q = 0.0;
+            for i in 0..n {
+                q += match allele_frequencies.matrix[(i, j)].is_nan() {
+                    true => 0.0,
+                    false => {
+                        allele_frequencies.matrix[(i, j)]
+                            * (filter_stats.pool_sizes[i]
+                                / filter_stats.pool_sizes.iter().sum::<f64>())
+                    }
+                };
+            }
+            if (q < filter_stats.min_allele_frequency)
+                || (q > (1.00 - filter_stats.min_allele_frequency))
+            {
+                allele_frequencies.matrix.remove_index(Axis(1), j);
+                matrix.remove_index(Axis(1), j);
+                self.alleles_vector.remove(j);
+                p -= 1;
+            } else {
+                j += 1;
+            }
+        }
+        // Check if all alleles have failed the minimum allele frequency, i.e. the locus has been filtered out
+        if p < 2 {
+            return Err(Error::new(ErrorKind::Other, "Filtered out."));
+        }
+        // Filter out if the locus is missing across all pools using the first allele where if the locus is missing then all
+        let (n, _p) = allele_frequencies.matrix.dim();
+        let n_missing_across_pools = allele_frequencies
+            .matrix
+            .slice(s![.., 0])
+            .fold(0, |sum, &x| if x.is_nan() { sum + 1 } else { sum });
+        if n_missing_across_pools == n {
+            return Err(Error::new(ErrorKind::Other, "Filtered out."));
+        }
+        // Filter-out the locus if the rate of missingness, i.e. the fraction of the pools missing coverage of the current locus is below the minimum threshold
+        if (n_missing_across_pools as f64 / n as f64) > filter_stats.max_missingness_rate {
+            return Err(Error::new(ErrorKind::Other, "Filtered out."));
+        }
+        // Correct allele frequencies if one or more alleles were filtered out
+        for i in 0..matrix.nrows() {
+            let row_sum = matrix.row(i).sum();
+            for j in 0..matrix.ncols() {
+                matrix[(i, j)] /= row_sum;
+            }
+        }
+        // Return the locus if it passed all the filtering steps
+        self.matrix = matrix;
+        Ok(self)
+    }
+}
+
+impl Sort for LocusFrequencies {
+    fn sort_by_allele_freq(&mut self, decreasing: bool) -> io::Result<&mut Self> {
+        let n = self.matrix.nrows();
+        let p = self.matrix.ncols();
+        let mut sorted_matrix: Array2<f64> = Array2::from_elem((n, p), f64::NAN);
+        let mut sorted_alleles_vector: Vec<String> = vec![];
+        let mut idx = (0..self.matrix.ncols()).collect::<Vec<usize>>();
+        // let column_sums = self.matrix.sum_axis(Axis(0));
+        let column_sums = self.matrix.map_axis(Axis(0), |r| {
+            r.iter()
+                .filter(|&&x| !x.is_nan())
+                .fold(0.0, |sum, &x| sum + x)
+        }); // ignoring NANs!
+            // println!("self={:?}", self);
+        if decreasing {
+            idx.sort_by(|&a, &b| column_sums[b].partial_cmp(&column_sums[a]).expect("Error sorting (decreasing) mean allele frequencies across pools within the sort_by_allele_freq() method for LocusFrequencies struct."));
+        } else {
+            idx.sort_by(|&a, &b| column_sums[a].partial_cmp(&column_sums[b]).expect("Error sorting (increasing) mean allele frequencies across pools within the sort_by_allele_freq() method for LocusFrequencies struct."));
+        }
+        for (i, j) in idx.into_iter().enumerate() {
+            sorted_matrix.column_mut(i).assign(&self.matrix.column(j));
+            sorted_alleles_vector.push(self.alleles_vector[j].clone());
+        }
+        self.matrix = sorted_matrix;
+        self.alleles_vector = sorted_alleles_vector;
+        Ok(self)
+    }
+}
+
+impl RemoveMissing for LocusCountsAndPhenotypes {
+    // Remove pools with missing data in the phenotype file
+    fn remove_missing(&mut self) -> io::Result<&mut Self> {
+        let (n, k) = self.phenotypes.dim();
+        let n_ = self.pool_names.len();
+        let (n__, p) = self.locus_counts.matrix.dim();
+        assert_eq!(n, n_);
+        assert_eq!(n, n__);
+        let pool_means: Array1<f64> = self.phenotypes.mean_axis(Axis(1)).expect("Error calculating phenotype means per pool within the remove_missing() method for LocusCountsAndPhenotypes struct.");
+        let mut idx: Vec<usize> = vec![];
+        for i in 0..n {
+            if !pool_means[i].is_nan() {
+                idx.push(i);
+            }
+        }
+        if !idx.is_empty() {
+            let mut new_phenotypes: Array2<f64> = Array2::from_elem((idx.len(), k), f64::NAN);
+            let mut new_pool_names: Vec<String> = vec![];
+            let mut new_locus_counts_matrix: Array2<u64> = Array2::from_elem((idx.len(), p), 0);
+            for (i_new, i) in idx.into_iter().enumerate() {
+                for j in 0..k {
+                    new_phenotypes[(i_new, j)] = self.phenotypes[(i, j)];
+                }
+                new_pool_names.push(self.pool_names[i].clone());
+                for j in 0..p {
+                    new_locus_counts_matrix[(i_new, j)] = self.locus_counts.matrix[(i, j)];
+                }
+            }
+            self.phenotypes = new_phenotypes;
+            self.pool_names = new_pool_names;
+            self.locus_counts.matrix = new_locus_counts_matrix;
+        } else {
+            return Err(Error::new(
+                ErrorKind::Other,
+                "All pools have missing data. Please check the phenotype file.",
+            ));
+        }
+        Ok(self)
+    }
+}
+
+impl RemoveMissing for GenotypesAndPhenotypes {
+    // Remove pools with missing data in the phenotype file
+    fn remove_missing(&mut self) -> io::Result<&mut Self> {
+        let (n, k) = self.phenotypes.dim();
+        let n_ = self.pool_names.len();
+        let (n__, p) = self.intercept_and_allele_frequencies.dim();
+        let (n___, l) = self.coverages.dim();
+        assert_eq!(n, n_);
+        assert_eq!(n, n__);
+        assert_eq!(n, n___);
+        let pool_means: Array1<f64> = self.phenotypes.mean_axis(Axis(1)).expect("Error calculating phenotype means per pool within the remove_missing() method for GenotypesAndPhenotypes struct.");
+        let mut idx: Vec<usize> = vec![];
+        for i in 0..n {
+            if !pool_means[i].is_nan() {
+                idx.push(i);
+            }
+        }
+        if !idx.is_empty() {
+            let mut new_phenotypes: Array2<f64> = Array2::from_elem((idx.len(), k), f64::NAN);
+            let mut new_pool_names: Vec<String> = vec![];
+            let mut new_intercept_and_allele_frequencies: Array2<f64> =
+                Array2::from_elem((idx.len(), p), f64::NAN);
+            let mut new_coverages: Array2<f64> = Array2::from_elem((idx.len(), l), f64::NAN);
+            for (i_new, i) in idx.into_iter().enumerate() {
+                for j in 0..k {
+                    new_phenotypes[(i_new, j)] = self.phenotypes[(i, j)];
+                }
+                new_pool_names.push(self.pool_names[i].clone());
+                for j in 0..p {
+                    new_intercept_and_allele_frequencies[(i_new, j)] =
+                        self.intercept_and_allele_frequencies[(i, j)];
+                }
+                for j in 0..l {
+                    new_coverages[(i_new, j)] = self.coverages[(i, j)];
+                }
+            }
+            self.phenotypes = new_phenotypes;
+            self.pool_names = new_pool_names;
+            self.intercept_and_allele_frequencies = new_intercept_and_allele_frequencies;
+            self.coverages = new_coverages;
+        } else {
+            return Err(Error::new(
+                ErrorKind::Other,
+                "All pools have missing data. Please check the phenotype file.",
+            ));
+        }
+        // println!("self={:?}", self);
+        // println!("self.phenotypes={:?}", self.phenotypes);
+        // println!("idx={:?}", idx);
+        Ok(self)
+    }
+}
+
+impl LoadAll for FileSyncPhen {
+    fn per_chunk_load(
+        &self,
+        start: &u64,
+        end: &u64,
+        filter_stats: &FilterStats,
+        keep_p_minus_1: bool,
+    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)> {
+        // Input syn file
+        let fname = self.filename_sync.clone();
+
+        // Prepare output vectors
+        let mut freq: Vec<LocusFrequencies> = Vec::new();
+        let mut cnts: Vec<LocusCounts> = Vec::new();
+        // Input file chunk
+        let file = File::open(fname.clone()).expect(
+            "Error opening input sync file within per_chunk_load() method for FileSyncPhen struct.",
+        );
+        let mut reader = BufReader::new(file);
+        // Navigate to the start of the chunk
+        let mut i: u64 = *start;
+        reader.seek(SeekFrom::Start(*start)).expect("Error navigating input sync file within per_chunk_load() method for FileSyncPhen struct.");
+        // Read and parse until the end of the chunk
+        while i < *end {
+            // Instantiate the line
+            let mut line = String::new();
+            // Read the line which automatically movesthe cursor position to the next line
+            let _ = reader.read_line(&mut line).expect("Error reading input sync file within per_chunk_load() method for FileSyncPhen struct.");
+            // Find the new cursor position
+            i = reader.stream_position().expect("Error navigating input sync file within per_chunk_load() method for FileSyncPhen struct.");
+            // Remove trailing newline character in Unix-like (\n) and Windows (\r)
+            if line.ends_with('\n') {
+                line.pop();
+                if line.ends_with('\r') {
+                    line.pop();
+                }
+            }
+            // Parse the pileup line
+            let mut locus_counts: LocusCounts = match line.lparse() {
+                Ok(x) => *x,
+                Err(x) => match x.kind() {
+                    ErrorKind::Other => continue,
+                    _ => {
+                        return Err(Error::new(
+                            ErrorKind::Other,
+                            "T_T Input sync file error, i.e. '".to_owned()
+                                + &fname
+                                + "' at line with the first 20 characters as: "
+                                + &line[0..20]
+                                + ".",
+                        ))
+                    }
+                },
+            };
+            match locus_counts.filter(filter_stats) {
+                Ok(x) => x,
+                Err(_) => continue,
+            };
+            let mut locus_frequencies = match locus_counts.to_frequencies() {
+                Ok(x) => *x,
+                Err(_) => continue,
+            };
+            // Remove minor allele
+            if keep_p_minus_1 {
+                locus_frequencies.sort_by_allele_freq(true).expect("Error sorting alleles by decreasing mean frequencies within the per_chunk_load() method for FileSyncPhen struct.");
+                locus_frequencies.matrix.remove_index(Axis(1), 0);
+                locus_frequencies.alleles_vector.remove(0);
+            }
+            freq.push(locus_frequencies);
+            cnts.push(locus_counts);
+        }
+        Ok((freq, cnts))
+    }
+
+    fn load(
+        &self,
+        filter_stats: &FilterStats,
+        keep_p_minus_1: bool,
+        n_threads: &usize,
+    ) -> io::Result<(Vec<LocusFrequencies>, Vec<LocusCounts>)> {
+        let fname = self.filename_sync.clone();
+        // Find the positions whereto split the file into n_threads pieces
+        let chunks = find_file_splits(&fname, n_threads).expect(
+            "Error splitting the input sync file within the load() method for FileSyncPhen struct.",
+        );
+        let n_threads = chunks.len() - 1;
+        println!("Chunks: {:?}", chunks);
+        // Tuple arguments of pileup2sync_chunks
+        // Instantiate thread object for parallel execution
+        let mut thread_objects = Vec::new();
+        // Vector holding all returns from pileup2sync_chunk()
+        let thread_ouputs_freq: Arc<Mutex<Vec<LocusFrequencies>>> =
+            Arc::new(Mutex::new(Vec::new())); // Mutated within each thread worker
+                                              // Mutated within each thread worker
+        let thread_ouputs_cnts: Arc<Mutex<Vec<LocusCounts>>> = Arc::new(Mutex::new(Vec::new()));
+        for i in 0..n_threads {
+            // Clone pileup2sync_chunk parameters
+            let self_clone = self.clone();
+            let start = chunks[i];
+            let end = chunks[i + 1];
+            let filter_stats = filter_stats.clone();
+            let thread_ouputs_freq_clone = thread_ouputs_freq.clone(); // Mutated within the current thread worker
+            let thread_ouputs_cnts_clone = thread_ouputs_cnts.clone(); // Mutated within the current thread worker
+            let thread = std::thread::spawn(move || {
+                let (mut freq, mut cnts) = self_clone
+                    .per_chunk_load(&start, &end, &filter_stats, keep_p_minus_1)
+                    .expect("Error calling per_chunk_load() within the load() method for FileSyncPhen struct.");
+                thread_ouputs_freq_clone.lock().expect("Error locking thread_ouputs_freq_clone during multi-threaded execution of per_chunk_load() within the load() method for FileSyncPhen struct.").append(&mut freq);
+                thread_ouputs_cnts_clone.lock().expect("Error locking thread_ouputs_cnts_clone during multi-threaded execution of per_chunk_load() within the load() method for FileSyncPhen struct.").append(&mut cnts);
+            });
+            thread_objects.push(thread);
+        }
+        // Waiting for all threads to finish
+        for thread in thread_objects {
+            thread.join().expect("Unknown thread error occured.");
+        }
+        // Extract output filenames from each thread into a vector and sort them
+        let mut freq: Vec<LocusFrequencies> = Vec::new();
+        let mut cnts: Vec<LocusCounts> = Vec::new();
+        for x in thread_ouputs_freq.lock().expect("Error unlocking the threads after multi-threaded execution to extract allele frequencies within the load() method for FileSyncPhen struct.").iter() {
+            freq.push(x.clone());
+        }
+        for x in thread_ouputs_cnts.lock().expect("Error unlocking the threads after multi-threaded execution to extract allele counts within the load() method for FileSyncPhen struct.").iter() {
+            cnts.push(x.clone());
+        }
+        freq.sort_by(|a, b| {
+            a.chromosome
+                .cmp(&b.chromosome)
+                .then(a.position.cmp(&b.position))
+        });
+        cnts.sort_by(|a, b| {
+            a.chromosome
+                .cmp(&b.chromosome)
+                .then(a.position.cmp(&b.position))
+        });
+
+        Ok((freq, cnts))
+    }
+
+    fn convert_into_genotypes_and_phenotypes(
+        &self,
+        filter_stats: &FilterStats,
+        keep_p_minus_1: bool,
+        n_threads: &usize,
+    ) -> io::Result<GenotypesAndPhenotypes> {
+        let (freqs, cnts) = self.load(filter_stats, keep_p_minus_1, n_threads).expect("Error calling load() within the convert_into_genotypes_and_phenotypes() method for FileSyncPhen struct.");
+        let n = self.pool_names.len();
+        let m = freqs.len(); // total number of loci
+                             // Find the total number of alleles across all loci
+        let mut p = 1; // start with the intercept
+        for f in freqs.iter() {
+            p += f.matrix.ncols();
+        }
+        // println!("p={}", p);
+        let mut chromosome: Vec<String> = Vec::with_capacity(p);
+        chromosome.push("intercept".to_owned());
+        let mut position: Vec<u64> = Vec::with_capacity(p);
+        position.push(0);
+        let mut allele: Vec<String> = Vec::with_capacity(p);
+        allele.push("intercept".to_owned());
+        let mut coverages: Array2<f64> = Array2::from_elem((n, m), f64::NAN);
+        let mut mat: Array2<f64> = Array2::from_elem((n, p), 1.0);
+        let mut j: usize = 1; // SNP index across loci, start after the intercept
+        assert_eq!(
+            freqs.len(),
+            cnts.len(),
+            "Frequencies and counts not the same length."
+        );
+        for (l, idx) in (0..freqs.len()).enumerate() {
+            // Allele frequencies
+            let f = &freqs[idx];
+            for j_ in 0..f.matrix.ncols() {
+                chromosome.push(f.chromosome.clone());
+                position.push(f.position);
+                allele.push(f.alleles_vector[j_].clone());
+                for i in 0..f.matrix.nrows() {
+                    mat[(i, j)] = f.matrix[(i, j_)];
+                }
+                j += 1; // next allele
+            }
+            // Coverages
+            let c = &cnts[idx];
+            let cov: Array1<f64> = c.matrix.map_axis(Axis(1), |r| {
+                r.map(|&x| x as f64)
+                    .iter()
+                    .filter(|&&x| !x.is_nan())
+                    .fold(0.0, |sum, &x| sum + x)
+            }); // summation across the columns which means sum of all elements per row while ignoring NANs!
+            for i in 0..cov.len() {
+                coverages[(i, l)] = cov[i];
+            }
+        }
+        // println!("coverages={:?}", coverages);
+        // println!("mat={:?}", mat);
+        // println!("mat={:?}", mat.slice(s![0..5, 0..4]));
+        // println!("chromosome[0]={:?}", chromosome[0]);
+        // println!("chromosome[1]={:?}", chromosome[1]);
+        // println!("chromosome[2]={:?}", chromosome[2]);
+        // println!("chromosome[3]={:?}", chromosome[3]);
+        // println!("position[0]={:?}", position[0]);
+        // println!("position[1]={:?}", position[1]);
+        // println!("position[2]={:?}", position[2]);
+        // println!("position[3]={:?}", position[3]);
+        Ok(GenotypesAndPhenotypes {
+            chromosome,
+            position,
+            allele,
+            intercept_and_allele_frequencies: mat,
+            phenotypes: self.phen_matrix.clone(),
+            pool_names: self.pool_names.clone(),
+            coverages,
+        })
+    }
+}
+
+impl SaveCsv for FileSyncPhen {
+    fn write_csv(
+        &self,
+        filter_stats: &FilterStats,
+        keep_p_minus_1: bool,
+        out: &str,
+        n_threads: &usize,
+    ) -> io::Result<String> {
+        // Output filename
+        let out = if out.is_empty() {
+            let time = SystemTime::now()
+                .duration_since(UNIX_EPOCH)
+                .expect("Error extracting time in UNIX_EPOCH within write_csv() method for FileSyncPhen struct.")
+                .as_secs_f64();
+            let bname = self.filename_sync.split('.').rev().collect::<Vec<&str>>()[1..]
+                .iter()
+                .copied()
+                .rev()
+                .collect::<Vec<&str>>()
+                .join(".");
+            bname.to_owned() + "-" + &time.to_string() + "-allele_frequencies.csv"
+        } else {
+            out.to_owned()
+        };
+        // Instantiate output file
+        let error_writing_file = "Unable to create file: ".to_owned() + &out;
+        let mut file_out = OpenOptions::new()
+            .create_new(true)
+            .write(true)
+            .append(false)
+            .open(&out)
+            .expect(&error_writing_file);
+        // Load the full sync file in parallel and sort
+        let (freqs, _cnts) = self
+            .load(filter_stats, keep_p_minus_1, n_threads)
+            .expect("Error calling load() within the write_csv() method for FileSyncPhen struct.");
+        // Make sure that we have the same number of pools in the genotype and phenotype files
+        assert!(!freqs.is_empty(), "No data passed the filtering variables. Please decrease minimum depth, and/or minimum allele frequency.");
+        assert!(
+            freqs[0].matrix.nrows() == self.pool_names.len(),
+            "Please check that the pools are consistent across the genotype and phenotype files."
+        );
+        // Write the header
+        file_out
+            .write_all(
+                ("#chr,pos,allele,".to_owned() + &self.pool_names.join(",") + "\n").as_bytes(),
+            )
+            .expect(
+                "Error calling write_all() within the write_csv() method for FileSyncPhen struct.",
+            );
+        // Write allele frequencies line by line
+        for f in freqs.iter() {
+            for i in 0..f.alleles_vector.len() {
+                let freqs_per_pool = f
+                    .matrix
+                    .column(i)
+                    .iter()
+                    .map(|x| parse_f64_roundup_and_own(*x, 6))
+                    .collect::<Vec<String>>()
+                    .join(",");
+                let line = [
+                    f.chromosome.to_owned(),
+                    f.position.to_string(),
+                    f.alleles_vector[i].to_owned(),
+                    freqs_per_pool,
+                ]
+                .join(",")
+                    + "\n";
+                file_out.write_all(line.as_bytes()).expect("Error calling write_all() per line of the output file within the write_csv() method for FileSyncPhen struct.");
+            }
+        }
+        Ok(out)
+    }
+}
+
+impl SaveCsv for GenotypesAndPhenotypes {
+    fn write_csv(
+        &self,
+        _filter_stats: &FilterStats,
+        _keep_p_minus_1: bool,
+        out: &str,
+        _n_threads: &usize,
+    ) -> io::Result<String> {
+        // Note: All input parameters are not used except for one - out, the rest are for other implementations of this trait i.e. filter_stats, keep_p_minus_1, and n_threads
+        // Sanity checks
+        let (n, p) = self.intercept_and_allele_frequencies.dim();
+        let (n_, _l) = self.coverages.dim();
+        let (n__, _k) = self.phenotypes.dim();
+        let n___ = self.pool_names.len();
+        let p_ = self.chromosome.len();
+        let p__ = self.position.len();
+        let p___ = self.allele.len();
+        assert_eq!(p_, p__, "Please check the genotypes and phenotypes data: the number of elements in the chromosome names vector is not equal to the number of elements in the positions vector.");
+        assert_eq!(p_, p___, "Please check the genotypes and phenotypes data: the number of elements in the chromosome names vector is not equal to the number of elements in the alleles vector.");
+        assert_eq!(p_, p, "Please check the genotypes and phenotypes data: the number of elements in the chromosome names vector is not equal to the number of columns in the allele frequencies matrix.");
+        assert_eq!(n___, n__, "Please check the genotypes and phenotypes data: the number of elements in the pool names vector is not equal to the number of rows in the phenotypes matrix.");
+        assert_eq!(n___, n_, "Please check the genotypes and phenotypes data: the number of elements in the pool names vector is not equal to the number of rows in the coverages matrix.");
+        assert_eq!(n___, n, "Please check the genotypes and phenotypes data: the number of elements in the pool names vector is not equal to the number of rows in the allele frequencies matrix.");
+        // Output filename
+        let out = if out.is_empty() {
+            let time = SystemTime::now()
+                .duration_since(UNIX_EPOCH)
+                .expect("Error extracting time in UNIX_EPOCH within write_csv() method for GenotypesAndPhenotypes struct.")
+                .as_secs_f64();
+            "genotypes_and_phenotypes".to_owned()
+                + "-"
+                + &time.to_string()
+                + "-allele_frequencies.csv"
+        } else {
+            out.to_owned()
+        };
+        // Instantiate output file
+        let error_writing_file = "Unable to create file: ".to_owned() + &out;
+        let mut file_out = OpenOptions::new()
+            .create_new(true)
+            .write(true)
+            .append(false)
+            .open(&out)
+            .expect(&error_writing_file);
+        // Write the header
+        file_out
+            .write_all(
+                ("#chr,pos,allele,".to_owned() + &self.pool_names.join(",") + "\n").as_bytes(),
+            )
+            .expect("Error calling write_all() within the write_csv() method for GenotypesAndPhenotypes struct.");
+        // Write allele frequencies line by line (skip the intercept)
+        for i in 1..p {
+            let freqs_per_pool = self
+                .intercept_and_allele_frequencies
+                .column(i)
+                .iter()
+                .map(|&x| parse_f64_roundup_and_own(x, 6))
+                .collect::<Vec<String>>()
+                .join(",");
+            let line = [
+                self.chromosome[i].to_owned(),
+                self.position[i].to_string(),
+                self.allele[i].to_owned(),
+                freqs_per_pool,
+            ]
+            .join(",")
+                + "\n";
+            file_out.write_all(line.as_bytes()).expect("Error calling write_all() per line of the output file within the write_csv() method for GenotypesAndPhenotypes struct.");
+        }
+        Ok(out)
+    }
+}
+
+pub fn load_sync<'a, 'b>(
+    fname: &'a str,
+    filter_stats: &'b mut FilterStats,
+    _fname_out_prefix: &'a str,
+    _rand_id: &'a str,
+    n_threads: &'a usize,
+) -> io::Result<(GenotypesAndPhenotypes, &'b FilterStats)> {
+    // Extract pool names from the sync file
+    let mut pool_names: Vec<String> = vec![];
+    let file = File::open(fname).expect("Error reading the input vcf file.");
+    let reader = BufReader::new(file);
+    for l in reader.lines() {
+        let mut line = l.expect("Error reading the input sync file.");
+        // Remove trailing newline character in Unix-like (\n) and Windows (\r)
+        if line.ends_with('\n') {
+            line.pop();
+            if line.ends_with('\r') {
+                line.pop();
+            }
+        }
+        let vec_line: Vec<&str> = line.split('\t').collect();
+        if vec_line[0] == "#chr" {
+            pool_names = vec_line[3..vec_line.len()]
+                .iter()
+                .map(|&x| x.to_owned())
+                .collect();
+            break;
+        }
+    }
+    let n = pool_names.len();
+    // If a single pool size was supplied then we are assuming the same sizes across all pools
+    if filter_stats.pool_sizes.len() == 1 {
+        filter_stats.pool_sizes = vec![filter_stats.pool_sizes[0]; n];
+    }
+    assert_eq!(
+        filter_stats.pool_sizes.len(),
+        n,
+        "Error: the number of pools and the pool sizes do not match."
+    );
+    // Initialise dummy phen struct (for other poolgen analyses)
+    let file_sync_phen = FileSyncPhen {
+        filename_sync: fname.to_owned(),
+        pool_names,
+        pool_sizes: filter_stats.pool_sizes.clone(),
+        phen_matrix: Array2::from_elem((n, 1), f64::NAN),
+        test: "".to_owned(),
+    };
+    Ok((file_sync_phen
+        .convert_into_genotypes_and_phenotypes(filter_stats, false, n_threads)
+        .expect("Error parsing the genotype (sync format) and dummy phenotype data via convert_into_genotypes_and_phenotypes() method within impute()."), 
+        filter_stats))
+}
+
+////////////////////////////////////////////////////////////////////////////////////////////////////////////
+#[cfg(test)]
+mod tests {
+    use rand::prelude::Distribution;
+
+    // Note this useful idiom: importing names from outer (for mod tests) scope.
+    use super::*;
+    #[test]
+    fn test_sync_check() {
+        // (01) CheckStruct: LocusCounts
+        let mut locus_counts = LocusCounts {
+            chromosome: "chr1".to_owned(),
+            position: 12345,
+            alleles_vector: vec!["A".to_owned()], // Missing an allele in alleles_vector
+            matrix: Array2::from_shape_vec((5, 2), vec![10, 90, 20, 80, 50, 50, 80, 20, 90, 10])
+                .unwrap(),
+        };
+        // Missing an allele in alleles_vector
+        assert!(locus_counts.check().is_err());
+        // Append the missing allele
+        locus_counts.alleles_vector.push("D".to_owned());
+        // No error
+        assert_eq!((), locus_counts.check().unwrap());
+        // (02) CheckStruct: LocusFrequencies
+        let mut locus_frequncies = LocusFrequencies {
+            chromosome: "chr1".to_owned(),
+            position: 12345,
+            alleles_vector: vec!["A".to_owned()], // Missing an allele in alleles_vector
+            matrix: Array2::from_shape_vec(
+                (5, 2),
+                vec![0.1, 0.9, 0.2, 0.8, 0.5, 0.5, 0.8, 0.2, 0.9, 0.1],
+            )
+            .unwrap(),
+        };
+        // Missing an allele in alleles_vector
+        assert!(locus_frequncies.check().is_err());
+        // Append the missing allele
+        locus_frequncies.alleles_vector.push("D".to_owned());
+        // No error
+        assert_eq!((), locus_frequncies.check().unwrap());
+        // (03) CheckStruct: LocusCountsAndPhenotypes
+        let mut locus_counts_and_phenotypes = LocusCountsAndPhenotypes {
+            locus_counts,
+            phenotypes: Array2::from_shape_vec((4, 1), vec![0.1, 0.2, 0.3, 0.4]).unwrap(),
+            pool_names: (1..5)
+                .map(|x| "Pop".to_owned() + &x.to_string()[..])
+                .collect(),
+        };
+        // Missing phenotype, and pool name
+        assert!(locus_counts_and_phenotypes.check().is_err());
+        // Replace phenotype array with the complete data
+        locus_counts_and_phenotypes.phenotypes =
+            Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap();
+        // Missing pool name
+        assert!(locus_counts_and_phenotypes.check().is_err());
+        // Append missing pool name
+        locus_counts_and_phenotypes
+            .pool_names
+            .push("Pop5".to_owned());
+        // No error
+        assert_eq!((), locus_counts_and_phenotypes.check().unwrap());
+        // (04) CheckStruct: GenotypesAndPhenotypes
+        let rng = rand::thread_rng();
+        let dist_gaus = statrs::distribution::Normal::new(0.0, 1.0).unwrap();
+        let mut genotypes_and_phenotypes = GenotypesAndPhenotypes {
+            chromosome: [
+                "intercept",
+                "chr1",
+                "chr1",
+                "chr1",
+                "chr2",
+                "chr2",
+                "chr2",
+                "chrX",
+                "chrX",
+            ]
+            .iter()
+            .map(|&x| x.to_owned())
+            .collect(),
+            position: vec![0, 123, 123, 123, 50005, 50005, 50005, 701, 701],
+            allele: ["intercept", "A", "T", "C", "A", "T", "C", "A", "T"]
+                .iter()
+                .map(|&x| x.to_owned())
+                .collect(),
+            intercept_and_allele_frequencies: Array2::from_shape_vec(
+                (5, 9),
+                vec![
+                    1.0, 0.1, 0.0, 0.9, 0.1, 0.1, 0.8, 0.6, 0.4, 1.0, 0.0, 0.1, 0.9, 0.2, 0.0, 0.8,
+                    0.5, 0.5, 1.0, 0.0, 0.0, 1.0, 0.1, 0.9, 0.0, 0.1, 0.9, 1.0, 0.0, 0.0, 1.0, 0.0,
+                    0.0, 1.0, 0.3, 0.7, 1.0, 0.3, 0.5, 0.2, 0.0, 0.5, 0.5, 0.5, 0.5,
+                ],
+            )
+            .unwrap(),
+            phenotypes: Array2::from_shape_vec(
+                (5, 2),
+                dist_gaus.sample_iter(rng.clone()).take(5 * 2).collect(),
+            )
+            .unwrap(),
+            pool_names: (0..4)
+                .map(|x| "Pop".to_owned() + &x.to_string()[..])
+                .collect(), // missing the 5th pool
+            coverages: Array2::from_shape_vec(
+                (5, 3),
+                std::iter::repeat(100.0).take(5 * 3).collect(),
+            )
+            .unwrap(),
+        };
+        println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
+        assert!(genotypes_and_phenotypes.check().is_err());
+        // Add missing poool
+        genotypes_and_phenotypes.pool_names.push("Pop5".to_owned());
+        // No error
+        assert_eq!((), genotypes_and_phenotypes.check().unwrap());
+    }
+
+    #[test]
+    fn test_sync_count() {
+        let rng = rand::thread_rng();
+        let dist_gaus = statrs::distribution::Normal::new(0.0, 1.0).unwrap();
+        let genotypes_and_phenotypes = GenotypesAndPhenotypes {
+            chromosome: [
+                "intercept",
+                "chr1",
+                "chr1",
+                "chr1",
+                "chr2",
+                "chr2",
+                "chr2",
+                "chrX",
+                "chrX",
+            ]
+            .iter()
+            .map(|&x| x.to_owned())
+            .collect(),
+            position: vec![0, 123, 123, 123, 50005, 50005, 50005, 701, 701],
+            allele: ["intercept", "A", "T", "C", "A", "T", "C", "A", "T"]
+                .iter()
+                .map(|&x| x.to_owned())
+                .collect(),
+            intercept_and_allele_frequencies: Array2::from_shape_vec(
+                (5, 9),
+                vec![
+                    1.0, 0.1, 0.0, 0.9, 0.1, 0.1, 0.8, 0.6, 0.4, 1.0, 0.0, 0.1, 0.9, 0.2, 0.0, 0.8,
+                    0.5, 0.5, 1.0, 0.0, 0.0, 1.0, 0.1, 0.9, 0.0, 0.1, 0.9, 1.0, 0.0, 0.0, 1.0, 0.0,
+                    0.0, 1.0, 0.3, 0.7, 1.0, 0.3, 0.5, 0.2, 0.0, 0.5, 0.5, 0.5, 0.5,
+                ],
+            )
+            .unwrap(),
+            phenotypes: Array2::from_shape_vec(
+                (5, 2),
+                dist_gaus.sample_iter(rng.clone()).take(5 * 2).collect(),
+            )
+            .unwrap(),
+            pool_names: (0..4)
+                .map(|x| "Pop".to_owned() + &x.to_string()[..])
+                .collect(), // missing the 5th pool
+            coverages: Array2::from_shape_vec(
+                (5, 3),
+                std::iter::repeat(100.0).take(5 * 3).collect(),
+            )
+            .unwrap(),
+        };
+        println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
+        println!(
+            "genotypes_and_phenotypes.count_loci().unwrap()={:?}",
+            genotypes_and_phenotypes.count_loci().unwrap()
+        );
+        let loci = genotypes_and_phenotypes.count_loci().unwrap();
+        assert_eq!(vec![1, 4, 7, 9], loci.0); // includes the trailing locus position + 1 for index slicing since the end position is exclusive
+        assert_eq!(
+            vec![
+                "chr1".to_owned(),
+                "chr2".to_owned(),
+                "chrX".to_owned(),
+                "chrX".to_owned()
+            ],
+            loci.1
+        ); // includes the trailing locus
+        assert_eq!(vec![123, 50005, 701, 701], loci.2); // includes the trailing locus
+                                                        // assert_eq!((), genotypes_and_phenotypes.count_loci().unwrap());
+    }
+
+    #[test]
+    fn test_sync_parse() {
+        let line = "Chromosome1\t456527\tC\t1:0:999:0:4:0\t0:1:2:0:0:0\t0:2:4:0:0:0\t0:1:4:0:0:0\t0:1:6:0:0:0".to_owned();
+        let counts: Box<LocusCounts> = line.lparse().unwrap();
+        println!("counts={:?}", counts);
+        assert!(
+            Array2::from_shape_vec(
+                (5, 6),
+                vec![
+                    1, 0, 999, 0, 4, 0, 0, 1, 2, 0, 0, 0, 0, 2, 4, 0, 0, 0, 0, 1, 4, 0, 0, 0, 0, 1,
+                    6, 0, 0, 0,
+                ]
+            )
+            .unwrap()
+                == (*counts).matrix
+        );
+    }
+
+    #[test]
+    fn test_sync_filter() {
+        let line = "Chromosome1\t456527\tC\t1:0:999:0:4:0\t0:1:2:0:0:0\t0:2:4:0:0:0\t0:1:4:0:0:0\t0:1:6:0:0:0".to_owned();
+        let mut counts: Box<LocusCounts> = line.lparse().unwrap();
+        let mut frequencies: Box<LocusFrequencies> = counts.to_frequencies().unwrap();
+        let filter_stats = FilterStats {
+            remove_ns: true,
+            min_quality: 0.005,
+            min_coverage: 1,
+            min_allele_frequency: 0.005,
+            max_missingness_rate: 0.0,
+            pool_sizes: vec![20., 20., 20., 20., 20.],
+        };
+        assert!(counts == counts.to_counts().unwrap());
+        assert!(
+            Array2::from_shape_vec(
+                (5, 6),
+                vec![
+                    1. / 1004.,
+                    0.,
+                    999. / 1004.,
+                    0.,
+                    4. / 1004.,
+                    0.,
+                    0.,
+                    1. / 3.,
+                    2. / 3.,
+                    0.,
+                    0.,
+                    0.,
+                    0.,
+                    2. / 6.,
+                    4. / 6.,
+                    0.,
+                    0.,
+                    0.,
+                    0.,
+                    1. / 5.,
+                    4. / 5.,
+                    0.,
+                    0.,
+                    0.,
+                    0.,
+                    1. / 7.,
+                    6. / 7.,
+                    0.,
+                    0.,
+                    0.,
+                ]
+            )
+            .unwrap()
+                == frequencies.matrix
+        );
+        counts.filter(&filter_stats).unwrap();
+        assert!(
+            Array2::from_shape_vec((5, 2), vec![0, 999, 1, 2, 2, 4, 1, 4, 1, 6]).unwrap()
+                == counts.matrix
+        );
+        assert!(
+            Array2::from_shape_vec(
+                (5, 6),
+                vec![
+                    1, 0, 999, 0, 4, 0, 0, 1, 2, 0, 0, 0, 0, 1, 2, 0, 0, 0, 0, 1, 4, 0, 0, 0, 0, 1,
+                    6, 0, 0, 0,
+                ]
+            )
+            .unwrap()
+                == frequencies.to_counts().unwrap().matrix
+        );
+        assert!(frequencies == frequencies.to_frequencies().unwrap());
+        frequencies.filter(&filter_stats).unwrap();
+        assert!(
+            Array2::from_shape_vec(
+                (5, 2),
+                vec![
+                    0. / 999.,
+                    999. / 999.,
+                    1. / 3.,
+                    2. / 3.,
+                    2. / 6.,
+                    4. / 6.,
+                    1. / 5.,
+                    4. / 5.,
+                    1. / 7.,
+                    6. / 7.,
+                ]
+            )
+            .unwrap()
+                == frequencies.matrix
+        );
+    }
+
+    #[test]
+    fn test_sync_sort() {
+        let line = "Chromosome1\t456527\tC\t1:0:999:0:4:0\t0:1:2:0:0:0\t0:2:4:0:0:0\t0:1:4:0:0:0\t0:1:6:0:0:0".to_owned();
+        let counts: Box<LocusCounts> = line.lparse().unwrap();
+        let mut frequencies: Box<LocusFrequencies> = counts.to_frequencies().unwrap();
+        frequencies.sort_by_allele_freq(true).unwrap();
+        assert!(vec!["C".to_owned(), "T".to_owned()] == frequencies.alleles_vector[0..2]);
+        assert!(Array1::from_vec(vec![0.0; 5]).view() == frequencies.matrix.column(5));
+        frequencies.sort_by_allele_freq(false).unwrap();
+        assert!(vec!["T".to_owned(), "C".to_owned()] == frequencies.alleles_vector[4..6]);
+        assert!(Array1::from_vec(vec![0.0; 5]).view() == frequencies.matrix.column(0));
+    }
+
+    #[test]
+    fn test_sync_remove_missing() {
+        let lines = vec!["Chromosome1\t12345\tC\t1:0:999:0:4:0\t0:1:2:0:0:0\t0:2:4:0:0:0\t0:1:4:0:0:0\t0:1:6:0:0:0".to_owned(),
+        "Chromosome2\t6789\tA\t1:0:0:3:0:0\t1:0:0:5:0:0\t7:0:0:2:0:0\t2:0:0:10:0:0\t10:0:0:50:0:0".to_owned(),
+        "Chromosome3\t42069\tT\t10:10:0:0:0:0\t5:12:0:0:0:0\t5:24:0:0:0:0\t5:14:0:0:0:0\t3:16:0:0:0:0".to_owned(),
+        ];
+        let mut counts: LocusCounts = *(lines[0].lparse().unwrap());
+        let filter_stats = FilterStats {
+            remove_ns: true,
+            min_quality: 0.005,
+            min_coverage: 1,
+            min_allele_frequency: 0.005,
+            max_missingness_rate: 0.0,
+            pool_sizes: vec![20., 20., 20., 20., 20.],
+        };
+        counts.filter(&filter_stats).unwrap();
+        let mut locus_counts_and_phenotypes = LocusCountsAndPhenotypes {
+            locus_counts: counts,
+            phenotypes: Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap(), // n pools x k traits
+            pool_names: (0..5)
+                .map(|x| ("pool_".to_owned() + &x.to_string()).to_owned())
+                .collect::<Vec<String>>(),
+        };
+
+        // Extract loci counts and frequencies
+        let mut loci_counts: Vec<LocusCounts> = vec![];
+        let mut loci_frequencies: Vec<LocusFrequencies> = vec![];
+        for i in 0..lines.len() {
+            let mut counts: LocusCounts = *(lines[i].lparse().unwrap());
+            let mut frequencies = counts.to_frequencies().unwrap();
+            counts.filter(&filter_stats).unwrap();
+            frequencies.filter(&filter_stats).unwrap();
+            frequencies.filter(&filter_stats).unwrap();
+            loci_counts.push(counts.clone());
+            loci_frequencies.push(*frequencies);
+        }
+        // Extract coverages n x l loci
+        let n = loci_counts[0].matrix.nrows();
+        let p = loci_counts.len();
+        let mut coverages: Array2<f64> = Array2::from_elem((n, p), f64::NAN);
+        for j in 0..p {
+            for i in 0..n {
+                coverages[(i, j)] = loci_counts[j].matrix.row(i).sum() as f64;
+            }
+        }
+        // println!("coverages={:?}", coverages);
+        // Build the GenotypesAndPhenotypes struct
+        let mut chromosome: Vec<String> = vec![];
+        let mut position: Vec<u64> = vec![];
+        let mut allele: Vec<String> = vec![];
+        let mut vec_intercept_and_allele_frequencies: Vec<f64> = vec![];
+        let phenotypes: Array2<f64> =
+            Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap();
+        let pool_names: Vec<String> = (0..5)
+            .map(|x| ("pool_".to_owned() + &x.to_string()).to_owned())
+            .collect();
+        let coverages: Array2<f64> = coverages;
+        for j in 0..loci_frequencies.len() {
+            let l = loci_frequencies[j].matrix.ncols();
+            chromosome.append(&mut vec![loci_frequencies[j].chromosome.clone(); l]);
+            position.append(&mut vec![loci_frequencies[j].position; l]);
+            allele.append(&mut loci_frequencies[j].alleles_vector.clone());
+        }
+        for i in 0..n {
+            vec_intercept_and_allele_frequencies.push(1.0); // append the intercept
+            for j in 0..loci_frequencies.len() {
+                vec_intercept_and_allele_frequencies.append(
+                    &mut loci_frequencies[j]
+                        .matrix
+                        .row(i)
+                        .map(|&x| x.to_owned())
+                        .into_iter()
+                        .collect::<Vec<f64>>(),
+                );
+            }
+        }
+        // println!("vec_intercept_and_allele_frequencies={:?}", vec_intercept_and_allele_frequencies);
+        let p_plus_one = vec_intercept_and_allele_frequencies.len() / n;
+        let intercept_and_allele_frequencies: Array2<f64> =
+            Array2::from_shape_vec((n, p_plus_one), vec_intercept_and_allele_frequencies).unwrap();
+        let mut genotypes_and_phenotypes = GenotypesAndPhenotypes {
+            chromosome: chromosome,
+            position: position,
+            allele: allele,
+            intercept_and_allele_frequencies: intercept_and_allele_frequencies,
+            phenotypes: phenotypes,
+            pool_names: pool_names,
+            coverages: coverages,
+        };
+        // println!("loci_frequencies={:?}", loci_frequencies);
+        // println!("loci_counts={:?}", loci_counts);
+        // println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
+        assert_eq!(
+            vec![1, 1, 2, 2, 3, 3]
+                .iter()
+                .map(|&x| "Chromosome".to_owned() + &x.to_string())
+                .collect::<Vec<String>>(),
+            genotypes_and_phenotypes.chromosome
+        );
+        assert_eq!(
+            vec![12345, 12345, 6789, 6789, 42069, 42069],
+            genotypes_and_phenotypes.position
+        );
+        assert_eq!(
+            Array1::from_vec(vec![0.0, 1.0, 2.0, 1.0, 1.0]),
+            &genotypes_and_phenotypes
+                .intercept_and_allele_frequencies
+                .column(1)
+                * &genotypes_and_phenotypes.coverages.column(0)
+        );
+        assert_eq!(
+            Array1::from_vec(vec![1.0, 1.0, 7.0, 2.0, 10.]),
+            &genotypes_and_phenotypes
+                .intercept_and_allele_frequencies
+                .column(3)
+                * &genotypes_and_phenotypes.coverages.column(1)
+        );
+        assert_eq!(
+            Array1::from_vec(vec![10., 5.0, 5.0, 5.0, 3.0]),
+            &genotypes_and_phenotypes
+                .intercept_and_allele_frequencies
+                .column(5)
+                * &genotypes_and_phenotypes.coverages.column(2)
+        );
+
+        locus_counts_and_phenotypes.phenotypes[(0, 0)] = f64::NAN;
+        genotypes_and_phenotypes.phenotypes[(1, 0)] = f64::NAN;
+        locus_counts_and_phenotypes.remove_missing().unwrap();
+        genotypes_and_phenotypes.remove_missing().unwrap();
+        println!(
+            "locus_counts_and_phenotypes={:?}",
+            locus_counts_and_phenotypes
+        );
+        println!("genotypes_and_phenotypes={:?}", genotypes_and_phenotypes);
+
+        assert_eq!(4, locus_counts_and_phenotypes.phenotypes.nrows());
+        assert_eq!(4, locus_counts_and_phenotypes.locus_counts.matrix.nrows());
+        assert_eq!(
+            4,
+            genotypes_and_phenotypes
+                .intercept_and_allele_frequencies
+                .nrows()
+        );
+        assert_eq!(4, genotypes_and_phenotypes.coverages.nrows());
+    }
+
+    #[test]
+    fn test_sync_load() {
+        let file_sync_phen = FileSyncPhen {
+            filename_sync: "tests/test.sync".to_owned(),
+            pool_names: (0..5)
+                .map(|x| "Pop".to_owned() + &x.to_string()[..])
+                .collect(),
+            pool_sizes: vec![100.0; 5],
+            phen_matrix: Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap(),
+            test: "test".to_owned(),
+        };
+        let filter_stats = FilterStats {
+            remove_ns: true,
+            min_quality: 1.00,
+            min_coverage: 0,
+            min_allele_frequency: 0.01,
+            max_missingness_rate: 1.0,
+            pool_sizes: vec![20., 20., 20., 20., 20.],
+        };
+        // Per chunk
+        let (locus_frequencies, locus_counts) = file_sync_phen
+            .per_chunk_load(&0, &300, &filter_stats, false)
+            .unwrap();
+        assert!(3 == locus_frequencies.len());
+        assert!(3 == locus_counts.len());
+        assert_eq!(
+            LocusFrequencies {
+                chromosome: "Chromosome1".to_owned(),
+                position: 1131021,
+                alleles_vector: vec!["T".to_owned(), "C".to_owned()],
+                matrix: Array2::from_shape_vec(
+                    (5, 2),
+                    vec![0.5, 0.5, 0.5, 0.5, 0.0, 1.0, 1. / 6., 5. / 6., 1.0, 0.0]
+                )
+                .unwrap()
+            },
+            locus_frequencies[2]
+        );
+        assert_eq!(
+            LocusCounts {
+                chromosome: "Chromosome1".to_owned(),
+                position: 1041321,
+                alleles_vector: vec!["T".to_owned(), "G".to_owned()],
+                matrix: Array2::from_shape_vec((5, 2), vec![20, 1, 12, 0, 15, 1, 22, 1, 26, 1])
+                    .unwrap()
+            },
+            locus_counts[1]
+        );
+        // Load
+        let (locus_frequencies_load, locus_counts_load) =
+            file_sync_phen.load(&filter_stats, false, &2).unwrap();
+        assert_eq!(5745, locus_frequencies_load.len());
+        assert_eq!(5745, locus_counts_load.len());
+        assert_eq!(locus_frequencies[0], locus_frequencies_load[0]);
+        assert_eq!(locus_frequencies[1], locus_frequencies_load[1]);
+        assert_eq!(locus_frequencies[2], locus_frequencies_load[2]);
+        assert_eq!(locus_counts[0], locus_counts_load[0]);
+        assert_eq!(locus_counts[1], locus_counts_load[1]);
+        assert_eq!(locus_counts[2], locus_counts_load[2]);
+        // Convert into genotypes and phenotypes
+        let genotypes_and_phenotypes: GenotypesAndPhenotypes = file_sync_phen
+            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &2)
+            .unwrap();
+        assert_eq!(12669, genotypes_and_phenotypes.chromosome.len());
+        assert_eq!(12669, genotypes_and_phenotypes.allele.len());
+        assert_eq!(12669, genotypes_and_phenotypes.position.len());
+        assert_eq!(
+            (5, 12669),
+            genotypes_and_phenotypes
+                .intercept_and_allele_frequencies
+                .dim()
+        );
+    }
+
+    #[test]
+    fn test_sync_save() {
+        let file_sync_phen = FileSyncPhen {
+            filename_sync: "tests/test.sync".to_owned(),
+            pool_names: (0..5)
+                .map(|x| "Pop".to_owned() + &x.to_string()[..])
+                .collect(),
+            pool_sizes: vec![100.0; 5],
+            phen_matrix: Array2::from_shape_vec((5, 1), vec![0.1, 0.2, 0.3, 0.4, 0.5]).unwrap(),
+            test: "test".to_owned(),
+        };
+        let filter_stats = FilterStats {
+            remove_ns: true,
+            min_quality: 1.00,
+            min_coverage: 0,
+            min_allele_frequency: 0.01,
+            max_missingness_rate: 1.0,
+            pool_sizes: vec![20., 20., 20., 20., 20.],
+        };
+        // File sync phen struct
+        let fname_out_file_sync_phen_save = "tests/test-file_sync_phen-save.csv".to_owned();
+        let _ = file_sync_phen.write_csv(&filter_stats, false, &fname_out_file_sync_phen_save, &2);
+        let file = std::fs::File::open(fname_out_file_sync_phen_save).unwrap();
+        let reader = std::io::BufReader::new(file);
+        let mut vec_lines: Vec<String> = vec![];
+        for line in reader.lines() {
+            let line = line.unwrap();
+            vec_lines.push(line);
+        }
+        assert_eq!(
+            "#chr,pos,allele,Pop0,Pop1,Pop2,Pop3,Pop4".to_owned(),
+            vec_lines[0]
+        );
+        assert_eq!(
+            "Chromosome1,456527,T,0,0.333333,0.333333,0.2,0.142857".to_owned(),
+            vec_lines[1]
+        );
+        assert_eq!(
+            "Chromosome1,1131021,T,0.5,0.5,0,0.166667,1".to_owned(),
+            vec_lines[5]
+        );
+        assert_eq!(
+            "Chromosome1,25785190,C,0.615385,0.833333,0.777778,1,0.9375".to_owned(),
+            vec_lines[100]
+        );
+        // Genotypes and phenotypes struct
+        let genotypes_and_phenotypes: GenotypesAndPhenotypes = file_sync_phen
+            .convert_into_genotypes_and_phenotypes(&filter_stats, false, &2)
+            .unwrap();
+        let fname_out_genotypes_and_phenotypes_save =
+            "tests/test-genotypes_and_phenotypes-save.csv".to_owned();
+        let _ = genotypes_and_phenotypes.write_csv(
+            &filter_stats,
+            false,
+            &fname_out_genotypes_and_phenotypes_save,
+            &2,
+        );
+        let file = std::fs::File::open(fname_out_genotypes_and_phenotypes_save).unwrap();
+        let reader = std::io::BufReader::new(file);
+        let mut vec_lines: Vec<String> = vec![];
+        for line in reader.lines() {
+            let line = line.unwrap();
+            vec_lines.push(line);
+        }
+        assert_eq!(
+            "#chr,pos,allele,Pop0,Pop1,Pop2,Pop3,Pop4".to_owned(),
+            vec_lines[0]
+        );
+        assert_eq!(
+            "Chromosome1,456527,T,0,0.333333,0.333333,0.2,0.142857".to_owned(),
+            vec_lines[1]
+        );
+        assert_eq!(
+            "Chromosome1,1131021,T,0.5,0.5,0,0.166667,1".to_owned(),
+            vec_lines[5]
+        );
+        assert_eq!(
+            "Chromosome1,25785190,C,0.615385,0.833333,0.777778,1,0.9375".to_owned(),
+            vec_lines[100]
+        );
+    }
+}
diff --git a/src/vcf.rs b/src/vcf.rs
new file mode 100644
index 0000000..8e608f2
--- /dev/null
+++ b/src/vcf.rs
@@ -0,0 +1,763 @@
+//! Vcf data (i.e. variant calling format canonical in human genetics) processing (`Parse` and `Filter` traits and `vcf_to_sync` format conversion function) and parallel I/O (`ChunkyReadAnalyseWrite` trait)
+use ndarray::prelude::*;
+use std::fs::{File, OpenOptions};
+use std::io::{self, prelude::*, BufReader, BufWriter, Error, ErrorKind, SeekFrom};
+use std::str;
+use std::sync::{Arc, Mutex};
+use std::time::{SystemTime, UNIX_EPOCH};
+
+use crate::helpers::*;
+use crate::structs_and_traits::*;
+
+impl Parse<VcfLine> for String {
+    /// Parse a line of vcf into a `VcfLine` struct corresponding to a locus, i.e. representing the allele counts of one or more pools in a single locus
+    fn lparse(&self) -> io::Result<Box<VcfLine>> {
+        let raw_locus_data: Box<Vec<&str>> = Box::new(self.split('\t').collect());
+        // Chromosome or scaffold name
+        let chromosome: String = raw_locus_data[0].to_owned();
+        // Position or locus coordinate in the genome assembly
+        let position = match raw_locus_data[1].parse::<u64>() {
+            Ok(x) => x,
+            Err(_) => return Err(Error::new(ErrorKind::Other, "Please check the format of the input vcf file as position is not a valid integer (i.e. u64).".to_owned())),
+        };
+        // Allele in the reference genome assembly
+        let reference_allele = raw_locus_data[3].to_owned().parse::<char>().unwrap_or('D');
+        // Alternative alleles
+        let alternative_alleles = raw_locus_data[4]
+            .split(',')
+            .map(|x| x.parse::<char>().unwrap_or('D'))
+            .collect::<Vec<char>>();
+        // Allele depths per pool
+        let mut allele_depths = vec![];
+        // First find the index of each genotype column (delimited by ":") refers to the allele depth, i.e. field "AD"
+        let idx = raw_locus_data[8]
+            .split(':')
+            .enumerate()
+            .filter(|(_idx, x)| x == &"AD")
+            .map(|(idx, _x)| idx)
+            .collect::<Vec<usize>>();
+        if idx.len() == 1 {
+            let idx = idx[0];
+            // Iterate across pools to extract the allele depths
+            for i in 9..raw_locus_data.len() {
+                let geno_data = raw_locus_data[i].split(':').collect::<Vec<&str>>();
+                allele_depths.push(if (geno_data[0] == "./.") || (geno_data[0] == ".|.") {
+                    // Missing data, i.e. coded as "./." which we are coding here as 0 depth across all alleles
+                    vec![0; 1 + alternative_alleles.len()]
+                } else {
+                    // Non-missing data
+                    // Initially set zero counts for all alleles including excluded alternative alleles
+                    let mut d = vec![0; 1 + alternative_alleles.len()];
+                    for (j, x) in geno_data[idx]
+                        .split(',')
+                        .collect::<Vec<&str>>()
+                        .into_iter()
+                        .enumerate() {
+                            d[j] = x.parse::<u64>().expect("Error parsing allele depths from the AD field in the input vcf file within the lparse() method for String to generate VcfLline struct.");
+                    }
+                    d
+                });
+            }
+        } else {
+            // Allowing for vcf without AD attribute but we need the GT attribute to extract diploid allele frequency genotype classes corresponding to 0.0, 0.5, and 1.0
+            // Setting the depth per allele to 1000X, assuming reasonable minimum depth does not come up beyond this level
+            let allele_depth = 1000_u64;
+            let idx = raw_locus_data[8]
+                .split(':')
+                .enumerate()
+                .filter(|(_idx, x)| x == &"GT")
+                .map(|(idx, _x)| idx)
+                .collect::<Vec<usize>>()[0];
+            // Iterate across pools to extract the allele depths
+            for i in 9..raw_locus_data.len() {
+                let geno_data = raw_locus_data[i].split(':').collect::<Vec<&str>>();
+                // println!("geno_data[idx]={:?}", geno_data[idx]);
+                let mut diploid_geno_vec: Vec<u64> = vec![0; 1 + alternative_alleles.len()];
+                if (geno_data[idx] != "./.") && (geno_data[idx] != ".|.") {
+                    let diploid_geno = geno_data[idx].split('|').collect::<Vec<&str>>();
+                    // If the genotype is unphased:
+                    let diploid_geno = if diploid_geno.len() == 1 {
+                        geno_data[idx]
+                            .split('/')
+                            .collect::<Vec<&str>>()
+                            .iter()
+                            .map(|&x| x.parse::<u64>().expect("Error parsing genotype calls from the GT field in the input vcf file within the lparse() method for String to generate VcfLline struct."))
+                            .collect::<Vec<u64>>()
+                    } else {
+                        diploid_geno
+                            .iter()
+                            .map(|&x| x.parse::<u64>().expect("Error parsing genotype calls from the GT field in the input vcf file within the lparse() method for String to generate VcfLline struct."))
+                            .collect::<Vec<u64>>()
+                    };
+                    // println!("diploid_geno={:?}", diploid_geno);
+                    for (j, g) in diploid_geno_vec.iter_mut().enumerate() {
+                        *g = diploid_geno.iter().fold(0_u64, |sum, &a| {
+                            if j as u64 == a {
+                                sum + allele_depth
+                            } else {
+                                sum
+                            }
+                        });
+                    }
+                }
+                allele_depths.push(diploid_geno_vec);
+            }
+        }
+        // Output VcfLine struct
+        let out = Box::new(VcfLine {
+            chromosome,
+            position,
+            reference_allele,
+            alternative_alleles,
+            allele_depths,
+        });
+        Ok(out)
+    }
+}
+
+impl Filter for VcfLine {
+    /// Parse the `VcfLine` into `AlleleCounts`
+    fn to_counts(&self) -> io::Result<Box<LocusCounts>> {
+        let mut alleles_vector = vec![self.reference_allele.to_string()];
+        for a in &self.alternative_alleles {
+            alleles_vector.push(a.to_string());
+        }
+        let n = self.allele_depths.len();
+        let m = self.allele_depths[0].len(); // All pools should have the same number of alleles in the current locus
+        let mut matrix: Array2<u64> = Array2::from_elem((n, m), 0);
+        for i in 0..n {
+            for j in 0..m {
+                matrix[(i, j)] = self.allele_depths[i][j];
+            }
+        }
+        Ok(Box::new(LocusCounts {
+            chromosome: self.chromosome.clone(),
+            position: self.position,
+            alleles_vector,
+            matrix,
+        }))
+    }
+
+    /// Parse `VcfLine` into `AlleleFrequencies`
+    fn to_frequencies(&self) -> io::Result<Box<LocusFrequencies>> {
+        let locus_counts = self.to_counts().expect(
+            "Error calling to_counts() within the to_frequencies() method for VcfLine struct.",
+        );
+        let n = locus_counts.matrix.nrows();
+        let p = locus_counts.matrix.ncols();
+        let row_sums = locus_counts.matrix.sum_axis(Axis(1)); // summation across the columns which means sum of all elements per row
+        let mut matrix: Array2<f64> = Array2::from_elem((n, p), 0.0);
+        for i in 0..n {
+            for j in 0..p {
+                matrix[(i, j)] = locus_counts.matrix[(i, j)] as f64 / row_sums[i] as f64;
+            }
+        }
+        Ok(Box::new(LocusFrequencies {
+            chromosome: locus_counts.chromosome,
+            position: locus_counts.position,
+            alleles_vector: locus_counts.alleles_vector,
+            matrix,
+        }))
+    }
+
+    /// Filter `VcfLine` by:
+    /// - removing the entire locus if the locus is fixed, i.e. only 1 allele was found or retained after filterings
+    /// Note that we are not removing alleles per locus if they fail the minimum allele frequency threshold, only if all alleles fail this threshold, i.e. when the locus is close to being fixed
+    fn filter(&mut self, filter_stats: &FilterStats) -> io::Result<&mut Self> {
+        // All the pools needs be have been covered at least min_coverage times
+        for i in 0..self.allele_depths.len() {
+            let c = &self.allele_depths[i].iter().sum::<u64>();
+            if c < &filter_stats.min_coverage {
+                return Err(Error::new(ErrorKind::Other, "Filtered out."));
+            }
+        }
+        // Filter by minimum allele frequency,
+        //// First convert the counts per pool into frequencies
+        let allele_frequencies = match self.to_frequencies() {
+            Ok(x) => x,
+            Err(_) => {
+                return Err(Error::new(
+                    ErrorKind::Other,
+                    "Cannot convert vcf line into allele frequencies.",
+                ))
+            }
+        };
+        // println!("allele_frequencies={:?}", &allele_frequencies);
+        // println!("self={:?}", self);
+        //// Next account for pool sizes to get the proper minmum allele frequency across all pools
+        let n = allele_frequencies.matrix.nrows();
+        let mut m = allele_frequencies.matrix.ncols();
+        let mut q: f64;
+        let mut j: usize = 1;
+        while j < m {
+            q = 0.0;
+            for i in 0..n {
+                q += allele_frequencies.matrix[(i, j)] * filter_stats.pool_sizes[i]
+                    / filter_stats.pool_sizes.iter().sum::<f64>();
+                // We've made sure the pool_sizes sum up to one in phen.rs
+            }
+            if (q < filter_stats.min_allele_frequency)
+                || (q > (1.00 - filter_stats.min_allele_frequency))
+            {
+                m -= 1;
+            } else {
+                j += 1;
+            }
+        }
+        // Filter the whole locus depending on whether or not we have retained at least 2 alleles
+        if m < 2 {
+            return Err(Error::new(ErrorKind::Other, "Filtered out."));
+        }
+        Ok(self)
+    }
+}
+
+/// Convert `VcfLine` into a string representing a line or locus in a `sync` file.
+pub fn vcf_to_sync(vcf_line: &mut VcfLine, filter_stats: &FilterStats) -> Option<String> {
+    // Filter
+    match vcf_line.filter(filter_stats) {
+        Ok(x) => x,
+        Err(_) => return None,
+    };
+    // Convert to counts
+    let locus_counts = match vcf_line.to_counts() {
+        Ok(x) => x,
+        Err(_) => return None,
+    };
+    let n = locus_counts.matrix.nrows();
+
+    // Setup the A:T:C:G:DEL:N allele counts per pool (where DEL refers to an indel where we are limited to a single class, i.e. multiple different indels at a locus are currently all just classified as if they were a single type of variant class)
+    let expected_alleles = ["A", "T", "C", "G", "D", "N"]
+        .iter()
+        .map(|&x| x.to_owned())
+        .collect::<Vec<String>>();
+    let mut atcgdn_matrix = Array2::from_elem((n, 6), 0);
+    for i in 0..n {
+        for j in 0..6 {
+            for k in 0..locus_counts.alleles_vector.len() {
+                if locus_counts.alleles_vector[k] == expected_alleles[j] {
+                    atcgdn_matrix[(i, j)] = locus_counts.matrix[(i, k)];
+                    break;
+                }
+            }
+        }
+    }
+
+    // Instantiate the output line
+    let mut x = vec![
+        vcf_line.chromosome.clone(),
+        vcf_line.position.to_string(),
+        vcf_line.reference_allele.to_string(),
+    ];
+    for i in 0..n {
+        x.push(
+            atcgdn_matrix
+                .row(i)
+                .into_iter()
+                .map(|w| w.to_string())
+                .collect::<Vec<String>>()
+                .join(":"),
+        );
+    }
+    let out = x.join("\t") + "\n";
+    Some(out)
+}
+
+impl ChunkyReadAnalyseWrite<VcfLine, fn(&mut VcfLine, &FilterStats) -> Option<String>> for FileVcf {
+    /// Load a `FileVcf`, process/analyse `VcfLine`s using some `function`, and output a file
+    /// This function performs the I/O and processing/analyses for a chunk of the input file, such that each chunk is allocated to a dedicated thread for computational efficiency
+    fn per_chunk(
+        &self,
+        start: &u64,
+        end: &u64,
+        outname_ndigits: &usize,
+        filter_stats: &FilterStats,
+        function: fn(&mut VcfLine, &FilterStats) -> Option<String>,
+    ) -> io::Result<String> {
+        let fname = self.filename.clone();
+        // Add leading zeros in front of the start file position so that we can sort the output files per chuck or thread properly
+        let mut start_string = start.to_string();
+        for _i in 0..(outname_ndigits - start_string.len()) {
+            start_string = "0".to_owned() + &start_string;
+        }
+        // Add leading zeros in front of the end file position so that we can sort the output files per chuck or thread properly
+        let mut end_string = end.to_string();
+        for _i in 0..(outname_ndigits - end_string.len()) {
+            end_string = "0".to_owned() + &end_string;
+        }
+        // Output temp file for the chunk
+        let fname_out = fname.to_owned() + "-" + &start_string + "-" + &end_string + ".sync.tmp";
+        let out = fname_out.clone();
+        let error_writing_file = "Unable to create file: ".to_owned() + &fname_out;
+        let error_writing_line = "Unable to write line into file: ".to_owned() + &fname_out;
+        let file_out = File::create(fname_out).expect(&error_writing_file);
+        let mut file_out = BufWriter::new(file_out);
+        // Input file chunk
+        let file = File::open(fname.clone()).expect(
+            "Error opening the input vcf file within the per_chuck() method for FileVcf struct.",
+        );
+        let mut reader = BufReader::new(file);
+        // Navigate to the start of the chunk
+        let mut i: u64 = *start;
+        reader.seek(SeekFrom::Start(*start)).expect(
+            "Error navigating the input vcf file within the per_chuck() method for FileVcf struct.",
+        );
+        // Read and parse until the end of the chunk
+        while i < *end {
+            // Instantiate the line
+            let mut line = String::new();
+            // Read the line which automatically movesthe cursor position to the next line
+            let _ = reader.read_line(&mut line).expect("Error reading the input vcf file within the per_chuck() method for FileVcf struct.");
+            // Find the new cursor position
+            i = reader.stream_position().expect("Error navigating the input vcf file within the per_chuck() method for FileVcf struct.");
+            // Remove trailing newline character in Unix-like (\n) and Windows (\r)
+            if line.ends_with('\n') {
+                line.pop();
+                if line.ends_with('\r') {
+                    line.pop();
+                }
+            }
+            // Ignore commented-out lines (i.e. '#' => 35)
+            if line.as_bytes()[0] == 35_u8 {
+                continue;
+            }
+            // Parse the vcf line
+            let mut vcf_line: Box<VcfLine> = line.lparse().expect(
+                &("Input file error, i.e. '".to_owned()
+                    + &fname
+                    + "' at line with the first 20 characters as: "
+                    + &line[0..20]
+                    + "."),
+            );
+            // Write the line
+            match function(&mut vcf_line, filter_stats) {
+                Some(x) => file_out.write_all(x.as_bytes()).expect(&error_writing_line),
+                None => continue,
+            };
+        }
+        Ok(out)
+    }
+
+    /// I/O and processing/analyses of a `FileVcf` using multiple threads for computational efficiency
+    /// Each thread is allocated a chunk of the file, and the number of threads is set by the user with a default of 2.
+    fn read_analyse_write(
+        &self,
+        filter_stats: &FilterStats,
+        out: &str,
+        n_threads: &usize,
+        function: fn(&mut VcfLine, &FilterStats) -> Option<String>,
+    ) -> io::Result<String> {
+        // Unpack vcf and pool names filenames
+        let fname = self.filename.clone();
+        // Output filename
+        let mut out = out.to_owned();
+        if out == *"" {
+            let time = SystemTime::now()
+                .duration_since(UNIX_EPOCH)
+                .expect("Error extracting time in UNIX_EPOCH within read_analyse_write() method for FileVcf struct.")
+                .as_secs_f64();
+            let bname = fname.split('.').rev().collect::<Vec<&str>>()[1..]
+                .iter()
+                .copied()
+                .rev()
+                .collect::<Vec<&str>>()
+                .join(".");
+            out = bname.to_owned() + "-" + &time.to_string() + ".sync";
+        }
+        // Instantiate output file
+        let error_writing_file = "Unable to create file: ".to_owned() + &out;
+        // let mut file_out = File::create(&out).expect(&error_writing_file);
+        let mut file_out = OpenOptions::new()
+            .create_new(true)
+            .write(true)
+            .append(false)
+            .open(&out)
+            .expect(&error_writing_file);
+        // Find the pool names from the last header line of the vcf file
+        let file = File::open(fname.clone()).expect("Error opening the input vcf file within the read_analyse_write() method for FileVcf struct.");
+        let reader = BufReader::new(file);
+        let mut pool_names: Vec<String> = vec![];
+        for line in reader.lines() {
+            let line = line.expect("Error reading the input vcf file within the read_analyse_write() method for FileVcf struct.");
+            if line.len() < 6 {
+                continue;
+            }
+            if &line[0..6] == "#CHROM" {
+                pool_names = line
+                    .split('\t')
+                    .enumerate()
+                    .filter(|&(idx, _x)| idx > 8)
+                    .map(|(_idx, x)| x.to_owned())
+                    .collect();
+            }
+        }
+        let names = if !pool_names.is_empty() {
+            pool_names.join("\t")
+        } else {
+            return Err(Error::new(ErrorKind::Other, "Pool names not found, please check the header line of the vcf file. Make sure `#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\tFORMAT...` header exists.".to_owned()));
+        };
+        // Find the positions where to split the file into n_threads pieces
+        let chunks = find_file_splits(&fname, n_threads).expect("Error calling find_file_splits() within the read_analyse_write() method for FileVcf struct.");
+        let n_threads = chunks.len() - 1;
+        let n_digits = chunks[n_threads].to_string().len();
+        println!("Chunks: {:?}", chunks);
+        // Tuple arguments of vcf2sync_chunks
+        // Instantiate thread object for parallel execution
+        let mut thread_objects = Vec::new();
+        // Vector holding all returns from vcf2sync_chunk()
+        let thread_ouputs: Arc<Mutex<Vec<String>>> = Arc::new(Mutex::new(Vec::new()));
+        // Mutated within each thread worker
+        // Making four separate threads calling the `search_for_word` function
+        for i in 0..n_threads {
+            // Clone vcf2sync_chunk parameters
+            let self_clone = self.clone();
+            let start = chunks[i];
+            let end = chunks[i + 1];
+            let outname_ndigits = n_digits;
+            let filter_stats = filter_stats.clone();
+            let thread_ouputs_clone = thread_ouputs.clone(); // Mutated within the current thread worker
+            let thread = std::thread::spawn(move || {
+                let fname_out_per_thread = self_clone
+                    .per_chunk(&start, &end, &outname_ndigits, &filter_stats, function)
+                    .expect("Error calling per_chunk() within the read_analyse_write() method for FileVcf struct.");
+                thread_ouputs_clone
+                    .lock()
+                    .expect("Error locking thread_ouputs_clone during multi-threaded execution of per_chunk() within the read_analyse_write() method for FileVcf struct.")
+                    .push(fname_out_per_thread);
+            });
+            thread_objects.push(thread);
+        }
+        // Waiting for all threads to finish
+        for thread in thread_objects {
+            thread.join().expect("Unknown thread error occurred.");
+        }
+        file_out
+            .write_all(("#chr\tpos\tref\t".to_owned() + &names + "\n").as_bytes())
+            .expect("Error writing the header line of the output file within the read_analyse_write() method for FileVcf struct.");
+        // Extract output filenames from each thread into a vector and sort them
+        let mut fnames_out: Vec<String> = Vec::new();
+        for f in thread_ouputs.lock().expect("Error unlocking the threads after multi-threaded execution of per_chunk() within the read_analyse_write() method for FileVcf struct.").iter() {
+            fnames_out.push(f.to_owned());
+        }
+        println!("fnames_out={:?}", fnames_out);
+        fnames_out.sort();
+        // Iterate across output files from each thread, and concatenate non-empty files
+        for f in fnames_out {
+            let mut file: File = File::open(&f).expect("Error opening output file per thread within the read_analyse_write() method for FileVcf struct.");
+            if file.metadata().expect("Error opening output file per thread within the read_analyse_write() method for FileVcf struct.").len() > 0 {
+                io::copy(&mut file, &mut file_out).expect("Error opening output file per thread within the read_analyse_write() method for FileVcf struct.");
+            }
+            // Clean-up: remove temporary output files from each thread
+            let error_deleting_file = "Unable to remove file: ".to_owned() + &f;
+            std::fs::remove_file(f).expect(&error_deleting_file);
+        }
+        Ok(out)
+    }
+}
+
+pub fn load_vcf<'a, 'b>(
+    fname: &'a str,
+    filter_stats: &'b mut FilterStats,
+    fname_out_prefix: &'a str,
+    rand_id: &'a str,
+    n_threads: &'a usize,
+) -> io::Result<(GenotypesAndPhenotypes, &'b FilterStats)> {
+    // Extract pool names from the vcf file
+    let mut pool_names: Vec<String> = vec![];
+    let file = File::open(fname).expect("Error opening the input vcf file.");
+    let reader = BufReader::new(file);
+    for l in reader.lines() {
+        let mut line = l.expect("Error reading the input vcf file.");
+        // Remove trailing newline character in Unix-like (\n) and Windows (\r)
+        if line.ends_with('\n') {
+            line.pop();
+            if line.ends_with('\r') {
+                line.pop();
+            }
+        }
+        let vec_line: Vec<&str> = line.split('\t').collect();
+        if vec_line[0] == "#CHROM" {
+            pool_names = vec_line[9..vec_line.len()]
+                .iter()
+                .map(|&x| x.to_owned())
+                .collect();
+            break;
+        }
+    }
+    let n = pool_names.len();
+    // If a single pool size was supplied then we are assuming the same sizes across all pools
+    if filter_stats.pool_sizes.len() == 1 {
+        filter_stats.pool_sizes = vec![filter_stats.pool_sizes[0]; n];
+    }
+    assert_eq!(
+        filter_stats.pool_sizes.len(),
+        n,
+        "Error: the number of pools and the pool sizes do not match."
+    );
+    // Convert vcf into sync
+    let file_vcf = FileVcf {
+        filename: fname.to_owned(),
+    };
+    let fname_sync_out = if fname_out_prefix.is_empty() {
+        fname.to_owned() + "-" + rand_id + ".sync"
+    } else {
+        fname_out_prefix.to_owned() + "-" + rand_id + ".sync"
+    };
+    let _ = file_vcf
+        .read_analyse_write(filter_stats, &fname_sync_out, n_threads, vcf_to_sync)
+        .expect(
+            "Error converting the vcf into sync via read_analyse_write() method within impute().",
+        );
+    // Initialise dummy phen struct (for other poolgen analyses)
+    let file_sync_phen = FileSyncPhen {
+        filename_sync: fname_sync_out.to_owned(),
+        pool_names,
+        pool_sizes: filter_stats.pool_sizes.clone(),
+        phen_matrix: Array2::from_elem((n, 1), f64::NAN),
+        test: "".to_owned(),
+    };
+    Ok((file_sync_phen
+        .convert_into_genotypes_and_phenotypes(filter_stats, false, n_threads)
+        .expect("Error parsing the input genotype (converted from vcf into sync) and dummy phenotype data via convert_into_genotypes_and_phenotypes() method within impute()."),
+        filter_stats))
+}
+
+////////////////////////////////////////////////////////////////////////////////////////////////////////////
+#[cfg(test)]
+mod tests {
+    use super::*;
+    #[test]
+    fn test_vcf_methods() {
+        let line = "chrA\t323723\t.\tC\tA,CCT\t327.237\t.\tDP=469\tGT:PL:DP:AD\t0/0:0,24,239:7:7,0,1\t0/0:0,15,194:5:5,0,2\t0/1:42,0,61:6:4,2,1\t0/1:23,0,71:9:7,1,0\t0/1:75,0,132:14:6,5,2\t0/0:0,37,202:7:7,0,1\t0/0:0,15,235:5:5,0,1\t0/1:59,0,237:9:5,4,0\t0/0:0,27,123:9:9,0,0\t0/1:59,0,123:13:23,3,10".to_owned();
+        let vcf_line: VcfLine = *(line.lparse().unwrap());
+        println!("vcf_line={:?}", vcf_line);
+        assert_eq!(
+            vcf_line,
+            VcfLine {
+                chromosome: "chrA".to_owned(),
+                position: 323723,
+                reference_allele: 'C',
+                alternative_alleles: vec!['A', 'D'],
+                allele_depths: vec![
+                    vec![7, 0, 1],
+                    vec![5, 0, 2],
+                    vec![4, 2, 1],
+                    vec![7, 1, 0],
+                    vec![6, 5, 2],
+                    vec![7, 0, 1],
+                    vec![5, 0, 1],
+                    vec![5, 4, 0],
+                    vec![9, 0, 0],
+                    vec![23, 3, 10],
+                ]
+            }
+        );
+        let counts = *(vcf_line.to_counts().unwrap());
+        println!("counts={:?}", counts);
+        assert_eq!(
+            counts,
+            LocusCounts {
+                chromosome: "chrA".to_owned(),
+                position: 323723,
+                alleles_vector: vec!["C".to_owned(), "A".to_owned(), "D".to_owned()],
+                matrix: Array2::from_shape_vec(
+                    (10, 3),
+                    vec![
+                        7, 0, 1, 5, 0, 2, 4, 2, 1, 7, 1, 0, 6, 5, 2, 7, 0, 1, 5, 0, 1, 5, 4, 0, 9,
+                        0, 0, 23, 3, 10,
+                    ]
+                )
+                .unwrap()
+            }
+        );
+        let frequencies = *(vcf_line.to_frequencies().unwrap());
+        println!("frequencies={:?}", frequencies);
+        assert_eq!(
+            frequencies,
+            LocusFrequencies {
+                chromosome: "chrA".to_owned(),
+                position: 323723,
+                alleles_vector: vec!["C".to_owned(), "A".to_owned(), "D".to_owned()],
+                matrix: Array2::from_shape_vec(
+                    (10, 3),
+                    vec![
+                        7. / 8.,
+                        0. / 8.,
+                        1. / 8.,
+                        5. / 7.,
+                        0. / 7.,
+                        2. / 7.,
+                        4. / 7.,
+                        2. / 7.,
+                        1. / 7.,
+                        7. / 8.,
+                        1. / 8.,
+                        0. / 8.,
+                        6. / 13.,
+                        5. / 13.,
+                        2. / 13.,
+                        7. / 8.,
+                        0. / 8.,
+                        1. / 8.,
+                        5. / 6.,
+                        0. / 6.,
+                        1. / 6.,
+                        5. / 9.,
+                        4. / 9.,
+                        0. / 9.,
+                        9. / 9.,
+                        0. / 9.,
+                        0. / 9.,
+                        23. / 36.,
+                        3. / 36.,
+                        10. / 36.,
+                    ]
+                )
+                .unwrap()
+            }
+        );
+        let filter_stats_1 = FilterStats {
+            remove_ns: true,
+            min_quality: 0.005,
+            min_coverage: 1,
+            min_allele_frequency: 0.0,
+            max_missingness_rate: 0.0,
+            pool_sizes: vec![0.2; 10],
+        };
+        let filter_stats_2 = FilterStats {
+            remove_ns: true,
+            min_quality: 0.005,
+            min_coverage: 10,
+            min_allele_frequency: 0.0,
+            max_missingness_rate: 0.0,
+            pool_sizes: vec![0.2; 10],
+        };
+        let mut filtered_vcf_1 = vcf_line.clone();
+        let mut filtered_vcf_2 = vcf_line.clone();
+        println!(
+            "filtered_vcf_1={:?}",
+            filtered_vcf_1.filter(&filter_stats_1)
+        );
+        println!(
+            "filtered_vcf_2={:?}",
+            filtered_vcf_2.filter(&filter_stats_2)
+        );
+        filtered_vcf_1.filter(&filter_stats_1).unwrap();
+        let err = match filtered_vcf_2.filter(&filter_stats_2) {
+            Ok(_) => 0,
+            Err(_) => 1,
+        };
+        assert_eq!(filtered_vcf_1, vcf_line);
+        assert_eq!(err, 1);
+
+        let mut vcf_line_2_sync = vcf_line.clone();
+        let sync_line = vcf_to_sync(&mut vcf_line_2_sync, &filter_stats_1).unwrap();
+        println!("sync_line={:?}", sync_line);
+        assert_eq!(sync_line, "chrA\t323723\tC\t0:0:7:0:1:0\t0:0:5:0:2:0\t2:0:4:0:1:0\t1:0:7:0:0:0\t5:0:6:0:2:0\t0:0:7:0:1:0\t0:0:5:0:1:0\t4:0:5:0:0:0\t0:0:9:0:0:0\t3:0:23:0:10:0\n".to_owned());
+
+        let file_vcf = FileVcf {
+            filename: "./tests/test.vcf".to_owned(),
+        };
+        let output = file_vcf
+            .read_analyse_write(
+                &filter_stats_1,
+                &"./tests/test-vcf2sync.sync".to_owned(),
+                &2,
+                vcf_to_sync,
+            )
+            .unwrap();
+        println!("output={:?}", output);
+
+        // Test for individual diploid genotype without the AD (allele depth) attribute
+        let line = "chrA\t323723\t.\tC\tA,CCT\t327.237\t.\tDP=469\tGT\t0/0\t0/1\t0/2\t1/1\t1/2\t2/2\t0|0\t0|1\t1|2\t2|2".to_owned();
+        let vcf_line: VcfLine = *(line.lparse().unwrap());
+        println!("vcf_line={:?}", vcf_line);
+        assert_eq!(
+            vcf_line,
+            VcfLine {
+                chromosome: "chrA".to_owned(),
+                position: 323723,
+                reference_allele: 'C',
+                alternative_alleles: vec!['A', 'D'],
+                allele_depths: vec![
+                    vec![2000, 0000, 0000],
+                    vec![1000, 1000, 0000],
+                    vec![1000, 0000, 1000],
+                    vec![0000, 2000, 0000],
+                    vec![0000, 1000, 1000],
+                    vec![0000, 0000, 2000],
+                    vec![2000, 0000, 0000],
+                    vec![1000, 1000, 0000],
+                    vec![0000, 1000, 1000],
+                    vec![0000, 0000, 2000],
+                ]
+            }
+        );
+        let counts = *(vcf_line.to_counts().unwrap());
+        println!("counts={:?}", counts);
+        assert_eq!(
+            counts,
+            LocusCounts {
+                chromosome: "chrA".to_owned(),
+                position: 323723,
+                alleles_vector: vec!["C".to_owned(), "A".to_owned(), "D".to_owned()],
+                matrix: Array2::from_shape_vec(
+                    (10, 3),
+                    vec![
+                        2000, 0000, 0000, 1000, 1000, 0000, 1000, 0000, 1000, 0000, 2000, 0000,
+                        0000, 1000, 1000, 0000, 0000, 2000, 2000, 0000, 0000, 1000, 1000, 0000,
+                        0000, 1000, 1000, 0000, 0000, 2000,
+                    ]
+                )
+                .unwrap()
+            }
+        );
+        let frequencies = *(vcf_line.to_frequencies().unwrap());
+        println!("frequencies={:?}", frequencies);
+        assert_eq!(
+            frequencies,
+            LocusFrequencies {
+                chromosome: "chrA".to_owned(),
+                position: 323723,
+                alleles_vector: vec!["C".to_owned(), "A".to_owned(), "D".to_owned()],
+                matrix: Array2::from_shape_vec(
+                    (10, 3),
+                    vec![
+                        2000. / 2000.,
+                        0000. / 2000.,
+                        0000. / 2000.,
+                        1000. / 2000.,
+                        1000. / 2000.,
+                        0000. / 2000.,
+                        1000. / 2000.,
+                        0000. / 2000.,
+                        1000. / 2000.,
+                        0000. / 2000.,
+                        2000. / 2000.,
+                        0000. / 2000.,
+                        0000. / 2000.,
+                        1000. / 2000.,
+                        1000. / 2000.,
+                        0000. / 2000.,
+                        0000. / 2000.,
+                        2000. / 2000.,
+                        2000. / 2000.,
+                        0000. / 2000.,
+                        0000. / 2000.,
+                        1000. / 2000.,
+                        1000. / 2000.,
+                        0000. / 2000.,
+                        0000. / 2000.,
+                        1000. / 2000.,
+                        1000. / 2000.,
+                        0000. / 2000.,
+                        0000. / 2000.,
+                        2000. / 2000.,
+                    ]
+                )
+                .unwrap()
+            }
+        );
+        // assert_eq!(0, 1);
+    }
+}

From edc3da431976e889c6b6c5e7341499d305715d65 Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Fri, 16 Feb 2024 17:18:35 +1100
Subject: [PATCH 03/12] trying to make a binary package but not performing as
 well as before

---
 Cargo.toml | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)
 create mode 100644 Cargo.toml

diff --git a/Cargo.toml b/Cargo.toml
new file mode 100644
index 0000000..f8ac6c6
--- /dev/null
+++ b/Cargo.toml
@@ -0,0 +1,18 @@
+[package]
+name = 'imputef'
+version = '0.1.0'
+edition = '2021'
+
+[dependencies]
+clap = { version="3.2.23", features=["derive"]}
+ndarray = { version = "0.15.6", features = ["rayon"]}
+ndarray-linalg = { version = "0.16.0", features = ["intel-mkl-static"] } # ndarray-linalg = { version = "0.16.0", features = ["openblas"] }
+statrs = "0.16.0"
+rand = "0.8.5"
+rayon = "1.7.0"
+
+[profile.dev]
+opt-level = 3
+
+[profile.release]
+opt-level = 3

From f165e6dcf00084b91d59380f52b8891e64a7706b Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Fri, 16 Feb 2024 18:59:42 +1100
Subject: [PATCH 04/12] rectifying improper use of clap boolean flag argument

---
 .gitignore           |  8 ++++----
 res/perf_functions.R | 19 ++++++++++++++++---
 src/main.rs          |  8 ++++++--
 3 files changed, 26 insertions(+), 9 deletions(-)

diff --git a/.gitignore b/.gitignore
index 19b0d6e..146febf 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,7 +1,7 @@
-/src/rust/Cargo.lock
-/src/rust/target/
-/src/rust/tests/test-*
-/tests/test.vcf-*
+/Cargo.lock
+/target/
+/tests/test*-*
+/tests/test*.vcf-*
 /tests/perf.slurm
 /tests/slurm-*
 /tests/apple.vcf
diff --git a/res/perf_functions.R b/res/perf_functions.R
index 9335103..1bac851 100644
--- a/res/perf_functions.R
+++ b/res/perf_functions.R
@@ -314,17 +314,30 @@ fn_test_imputation = function(vcf, mat_genotypes, mat_idx_high_conf_data, ploidy
     } else {
         restrict_linked_loci_per_chromosome = TRUE
     }
+    print(paste0("restrict_linked_loci_per_chromosome=", restrict_linked_loci_per_chromosome))
     ### (1) Mean value imputation
     time_ini = Sys.time()
-    fname_out_mvi = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " -m='mean' --fname-out-prefix='MVI-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome=", restrict_linked_loci_per_chromosome, " --n-threads=", n_threads), intern=TRUE), n=1)
+    fname_out_mvi = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " -m='mean' --fname-out-prefix='MVI-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --n-threads=", n_threads), intern=TRUE), n=1)
     duration_mvi = difftime(Sys.time(), time_ini, units="mins")
     ### (2) Adaptive LD-kNN imputation using default fixed min_loci_corr and max_pool_dist at 0.9 and 0.1, respectively (where min_l_loci=20 and min_k_neighbours=5)
     time_ini = Sys.time()
-    fname_out_aldknni_fixed = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AFIXED-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome=", restrict_linked_loci_per_chromosome, " --n-threads=", n_threads), intern=TRUE), n=1)
+    if (restrict_linked_loci_per_chromosome) {
+        fname_out_aldknni_fixed = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AFIXED-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome --n-threads=", n_threads), intern=TRUE), n=1)
+    } else {
+        fname_out_aldknni_fixed = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AFIXED-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --n-threads=", n_threads), intern=TRUE), n=1)
+    }
     duration_aldknni_fixed = difftime(Sys.time(), time_ini, units="mins")
     ### (3) Adaptive LD-kNN imputation using optimised min_loci_corr and max_pool_dist (where min_l_loci=20 and min_k_neighbours=5)
     time_ini = Sys.time()
-    fname_out_aldknni_optim = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome=", restrict_linked_loci_per_chromosome, " --n-threads=", n_threads, " --min-loci-corr='-1.0' --max-pool-dist='-1.0'"), intern=TRUE), n=1)
+    if (restrict_linked_loci_per_chromosome) {
+        tmp_fname_out_aldknni_optim = system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome --n-threads=", n_threads, " --min-loci-corr='-1.0' --max-pool-dist='-1.0'"), intern=TRUE)
+        print(tmp_fname_out_aldknni_optim)
+        fname_out_aldknni_optim = tail(tmp_fname_out_aldknni_optim, n=1)
+    } else {
+        tmp_fname_out_aldknni_optim = system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --min-loci-corr='-1.0' --max-pool-dist='-1.0'"), intern=TRUE)
+        print(tmp_fname_out_aldknni_optim)
+        fname_out_aldknni_optim = tail(tmp_fname_out_aldknni_optim, n=1)
+    }
     duration_aldknni_optim = difftime(Sys.time(), time_ini, units="mins")
     ### LinkImpute's LD-kNN imputation algorithm for unordered genotype data (forcing all data to be diploids)
     fname_for_linkimpute = paste0("LINKIMPUTE_INPUT-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id,".tsv")
diff --git a/src/main.rs b/src/main.rs
index 9c8545a..097ebe5 100644
--- a/src/main.rs
+++ b/src/main.rs
@@ -75,7 +75,7 @@ struct Args {
     #[clap(long, default_value_t = 5)]
     min_k_neighbours: usize,
     /// Restrict the choice of linked loci to within the chromosome the locus requiring imputation belongs to?
-    #[clap(long, default_value_t = true)]
+    #[clap(long, action)]
     restrict_linked_loci_per_chromosome: bool,
     /// Number of replications for the optimisation for the minimum loci correlation, and/or maximum genetic distance (minimum value of 1).
     #[clap(long, default_value_t = 20)]
@@ -253,6 +253,10 @@ fn main() {
         } else {
             args.max_pool_dist
         };
+        println!(
+            "args.restrict_linked_loci_per_chromosome={:?}",
+            args.restrict_linked_loci_per_chromosome
+        );
         impute_aldknni(
             genotypes_and_phenotypes,
             &filter_stats,
@@ -272,4 +276,4 @@ fn main() {
     println!("{}", fname_out);
 }
 
-// cargo build --release
\ No newline at end of file
+// cargo build --release

From eb58d5ea8a47f1cecfa2e6534670de977ec086f8 Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Fri, 16 Feb 2024 19:01:11 +1100
Subject: [PATCH 05/12] rectifying improper use of clap boolean flag argument

---
 .gitignore | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/.gitignore b/.gitignore
index 146febf..723bc69 100644
--- a/.gitignore
+++ b/.gitignore
@@ -2,6 +2,8 @@
 /target/
 /tests/test*-*
 /tests/test*.vcf-*
+/tests/test*.sync-*
+/tests/test*.csv-*
 /tests/perf.slurm
 /tests/slurm-*
 /tests/apple.vcf

From f5f31b4b7bea162a18942acf12243670401b5812 Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Fri, 16 Feb 2024 19:01:17 +1100
Subject: [PATCH 06/12] rectifying improper use of clap boolean flag argument

---
 .github/workflows/rust.yml |    62 +
 tests/test.pileup          | 64370 +++++++++++++++++++++++++++++++++++
 tests/test.txt             |  6918 ++++
 tests/test_2.csv           |   755 +
 tests/test_2.sync          |   377 +
 tests/test_2.vcf           |   406 +
 tests/test_pheno.csv       |     6 +
 7 files changed, 72894 insertions(+)
 create mode 100644 .github/workflows/rust.yml
 create mode 100644 tests/test.pileup
 create mode 100644 tests/test.txt
 create mode 100644 tests/test_2.csv
 create mode 100644 tests/test_2.sync
 create mode 100644 tests/test_2.vcf
 create mode 100644 tests/test_pheno.csv

diff --git a/.github/workflows/rust.yml b/.github/workflows/rust.yml
new file mode 100644
index 0000000..4e6fbef
--- /dev/null
+++ b/.github/workflows/rust.yml
@@ -0,0 +1,62 @@
+name: 🚀
+on:
+  push:
+    branches:
+      - main
+jobs:
+  compile:
+    name: Compile
+    runs-on: ubuntu-latest
+    steps:
+      - name: Setup | Checkout
+        uses: actions/checkout@v3
+      - name: Setup | Rust
+        uses: ATiltedTree/setup-rust@v1
+        with:
+          rust-version: stable
+      - name: Build | Compile
+        run: cargo check
+  test:
+    name: Test
+    strategy:
+      matrix:
+        os:
+          - ubuntu-latest
+          - windows-latest
+          # - macOS-latest
+        rust:
+          - stable
+          # - beta
+          # - nightly
+    runs-on: ${{ matrix.os }}
+    needs: [compile]
+    steps:
+      - name: Setup | Checkout
+        uses: actions/checkout@v3
+      - name: Setup | Rust
+        uses: ATiltedTree/setup-rust@v1
+        with:
+          rust-version: ${{ matrix.rust }}
+      - name: Tests | Rust
+        run: time cargo test
+      - name: Build | Compile | Test on test data
+        run: | 
+          cargo run -- -h
+
+          cargo run -- -f tests/test_2.csv -m mean
+          cargo run -- -f tests/test_2.sync -m mean
+          cargo run -- -f tests/test_2.vcf -m mean
+
+          cargo run -- -f tests/test_2.csv -m mean --pool-sizes=11,12,13,14,15,16,17,18,19,20
+          cargo run -- -f tests/test_2.sync -m mean --pool-sizes=11,12,13,14,15,16,17,18,19,20
+          cargo run -- -f tests/test_2.vcf -m mean --pool-sizes=11,12,13,14,15,16,17,18,19,20
+
+          cargo run -- -f tests/test_2.csv
+          cargo run -- -f tests/test_2.sync
+          cargo run -- -f tests/test_2.vcf
+
+          cargo run -- -f tests/test_2.csv --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
+          cargo run -- -f tests/test_2.sync --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
+          cargo run -- -f tests/test_2.vcf --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
+
+          rm intermediate_output-* test-* tests/test-* tests/test_2.*-*.*
diff --git a/tests/test.pileup b/tests/test.pileup
new file mode 100644
index 0000000..a4e593b
--- /dev/null
+++ b/tests/test.pileup
@@ -0,0 +1,64370 @@
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+Chromosome1	13925726	C	4	.T..	JJJJ	3	T.T	JJJ	1	.	J	0	*	*	3	T.T	AFJ
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+Chromosome1	22397876	G	1	,-8agccgaca	8	0	*	*	1	.-8AGCCGACA	O	1	,-8agccgaca	8	2	,,-8agccgaca	<8
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+Chromosome1	22830067	T	0	*	*	1	.$	g	2	A$.$	Jg	1	A$	J	2	A$.$	T>
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+Chromosome1	23671201	T	2	c,	JJ	0	*	*	1	c	J	1	.	s	0	*	*
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+Chromosome1	289331918	C	3	..T	JJJ	2	T.	FJ	2	..	JJ	0	*	*	0	*	*
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+Chromosome2	6822130	T	9	,c,,,,,,,	7FFJJJFJ7	5	,,,,,	AJJJ7	5	c,,cc	JJJFJ	0	*	*	5	,,,c,	JJFJF
+Chromosome2	6866419	A	0	*	*	2	TT	JJ	1	.	F	0	*	*	2	T.	JF
+Chromosome2	6866446	G	0	*	*	2	CC	ss	1	.	s	0	*	*	2	C.	Rs
+Chromosome2	6866449	G	0	*	*	2	TT	sk	1	.	s	0	*	*	2	T.	Vs
+Chromosome2	6866458	A	0	*	*	2	CC	ss	1	.	s	0	*	*	2	C.	Ws
+Chromosome2	6866524	C	0	*	*	2	TT	ss	1	.	s	0	*	*	2	T.	js
+Chromosome2	6866539	G	0	*	*	2	,,	JJ	1	C	s	0	*	*	2	C,	s<
+Chromosome2	6866571	G	0	*	*	2	aa	JJ	1	,	J	0	*	*	2	a,	JJ
+Chromosome2	6912306	G	1	.	A	0	*	*	0	*	*	3	..A	sJJ	1	A	J
+Chromosome2	6912310	C	1	.	J	0	*	*	0	*	*	3	.TT	sJJ	1	T	J
+Chromosome2	6912312	G	1	.	F	0	*	*	0	*	*	3	..C	sJJ	1	C	J
+Chromosome2	6912402	A	0	*	*	0	*	*	1	,	J	3	.GG	sFF	1	G	G
+Chromosome2	6912413	G	0	*	*	0	*	*	1	,	J	3	..A	sAF	1	A	J
+Chromosome2	6912425	C	0	*	*	0	*	*	1	,	J	3	..G	s7F	1	G	\
+Chromosome2	7034916	C	2	.,	s<	1	a	J	0	*	*	0	*	*	2	,t	JJ
+Chromosome2	7086245	G	0	*	*	0	*	*	1	.	J	1	A	J	2	A.	J7
+Chromosome2	7105498	T	0	*	*	3	..A	JJ7	0	*	*	2	AA	JJ	1	.	J
+Chromosome2	7105638	C	0	*	*	3	gg,	JJA	0	*	*	2	,,	JJ	1	g	<
+Chromosome2	7105674	A	0	*	*	3	gg,	JJA	0	*	*	2	,,	JJ	1	g	A
+Chromosome2	7238662	G	0	*	*	3	.T.	FoJ	1	A	<	0	*	*	1	.	J
+Chromosome2	7296442	A	0	*	*	0	*	*	1	,	F	1	.-1G	J	1	.-1G	J
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+Chromosome2	7588286	G	2	C.	JJ	1	C	F	0	*	*	1	,	J	0	*	*
+Chromosome2	7644679	A	1	T	s	1	C	s	1	.	s	0	*	*	2	T.	Ce
+Chromosome2	7663081	T	0	*	*	2	.,	JF	2	c,	JJ	1	c	J	0	*	*
+Chromosome2	7663082	A	0	*	*	2	.,	JF	2	t,	JJ	1	t	J	0	*	*
+Chromosome2	7702328	C	0	*	*	3	A.A	JsJ	0	*	*	1	.	J	1	A	J
+Chromosome2	7702376	A	0	*	*	3	G.G	`os	0	*	*	1	.	s	1	G	o
+Chromosome2	7702382	A	0	*	*	3	G.G	sss	0	*	*	1	.	s	1	G	s
+Chromosome2	7702427	A	0	*	*	3	G.G	jss	0	*	*	1	.	s	1	G	s
+Chromosome2	7702442	A	0	*	*	3	,gg	JJJ	0	*	*	1	,	J	1	g	J
+Chromosome2	7702447	A	0	*	*	3	,gg	JJJ	0	*	*	1	,	J	1	g	J
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+Chromosome2	7703233	T	1	.	J	0	*	*	2	.C	oJ	0	*	*	1	C	F
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+Chromosome2	7703271	A	1	.	J	0	*	*	2	.T	jJ	0	*	*	1	T	J
+Chromosome2	7703291	T	1	.	J	0	*	*	2	.C	RF	0	*	*	1	C	J
+Chromosome2	7703298	A	1	.	F	0	*	*	2	.G	oF	0	*	*	1	G	F
+Chromosome2	7717944	G	0	*	*	1	,-1t	A	0	*	*	2	,,-1t	J7	3	.-1T,-1t,-1t	MJF
+Chromosome2	7750995	C	0	*	*	1	a	J	2	,a	JJ	1	,	J	0	*	*
+Chromosome2	7761038	A	1	,-1g	J	0	*	*	1	,-1g	J	1	,	F	0	*	*
+Chromosome2	7853787	C	0	*	*	1	,-8acagtata	J	1	,-8acagtata	J	0	*	*	1	,	F
+Chromosome2	7857334	T	1	.-4CATG	U	0	*	*	1	.-4CATG	U	0	*	*	1	,	J
+Chromosome2	8110343	T	1	G	A	2	G,	As	0	*	*	0	*	*	1	.	s
+Chromosome2	8435957	C	2	.A	JJ	3	AA.	JJJ	7	.....A.	J<JJJJ7	3	...	JJJ	6	.G...G	JJJJJJ
+Chromosome2	8469693	T	0	*	*	1	.-7AACCCTA	9	1	.	e	3	.-1A..	\HA	0	*	*
+Chromosome2	8469724	A	0	*	*	1	.	J	1	,-6aaccct	@	3	,-6aaccct,,	<FJ	0	*	*
+Chromosome2	8547203	T	2	G.	JF	0	*	*	1	G	J	0	*	*	1	.	J
+Chromosome2	8577563	G	4	,,,a	JJJJ	0	*	*	0	*	*	1	,	J	1	t	J
+Chromosome2	8602704	T	0	*	*	1	.	A	0	*	*	2	c.	Js	1	C	o
+Chromosome2	8653681	A	0	*	*	0	*	*	1	.	s	1	.-1T	s	1	,-1t	J
+Chromosome2	8893077	C	0	*	*	1	T	W	2	..	s`	2	T.	Vs	2	.T	ss
+Chromosome2	8928865	A	1	G	A	1	.	<	0	*	*	0	*	*	2	.G	JJ
+Chromosome2	8928937	T	1	.	7	1	C	J	0	*	*	0	*	*	2	.C	JF
+Chromosome2	8980112	C	0	*	*	2	at	FA	1	,	J	0	*	*	1	t	J
+Chromosome2	8980129	G	0	*	*	2	,,	JA	2	a,	FJ	0	*	*	1	a	F
+Chromosome2	9015074	C	0	*	*	0	*	*	2	.T	JJ	1	T	J	2	TG	JJ
+Chromosome2	9015081	C	0	*	*	0	*	*	2	.-1A.	FJ	1	.-1A	J	1	.-1A	J
+Chromosome2	9140783	C	1	,	J	1	t	J	0	*	*	0	*	*	2	,t	JJ
+Chromosome2	9175316	C	3	.AA	F::	1	.	F	0	*	*	0	*	*	1	A	:
+Chromosome2	9302554	T	6	.C.CC.	<F<FJJ	3	CCC	7FJ	2	.C	7J	2	.C	AJ	2	C.	JF
+Chromosome2	9320622	C	2	A.	JJ	0	*	*	2	A.	JJ	0	*	*	1	A	J
+Chromosome2	9320678	C	2	.-1G.	ss	0	*	*	1	.-1G	F	0	*	*	1	.-1G	s
+Chromosome2	9320769	G	2	,a	JJ	0	*	*	2	c,	7J	0	*	*	1	,	J
+Chromosome2	9354618	A	0	*	*	0	*	*	2	G.	sk	1	.	`	1	G	s
+Chromosome2	9354633	A	0	*	*	0	*	*	2	G.	fs	1	.	e	1	G	s
+Chromosome2	9354658	A	0	*	*	0	*	*	2	.g	oJ	1	.	o	1	G	`
+Chromosome2	9354671	G	0	*	*	0	*	*	2	,a	JJ	1	,	J	1	a	J
+Chromosome2	9399828	G	1	.	J	0	*	*	0	*	*	2	.T	FJ	1	T	J
+Chromosome2	9399845	C	1	.	J	0	*	*	0	*	*	2	.G	sJ	1	G	J
+Chromosome2	9399847	T	1	.	J	0	*	*	0	*	*	2	.G	sJ	1	G	J
+Chromosome2	9399859	C	1	.	J	0	*	*	0	*	*	2	.G	`J	1	G	J
+Chromosome2	9399860	G	1	.	J	0	*	*	0	*	*	2	.A	sJ	1	A	J
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+Chromosome2	9399879	A	1	.	J	0	*	*	0	*	*	2	.G	`J	1	G	J
+Chromosome2	9399883	T	1	.	J	0	*	*	0	*	*	2	.C	\J	1	C	J
+Chromosome2	9399923	T	1	.	J	0	*	*	0	*	*	2	.C	VJ	1	C	J
+Chromosome2	9399925	G	1	.	J	0	*	*	0	*	*	2	.A	sJ	1	A	F
+Chromosome2	9399938	A	1	.	J	0	*	*	0	*	*	2	.G	oJ	1	G	A
+Chromosome2	9399959	C	1	.	J	0	*	*	0	*	*	2	.T	eJ	1	T	A
+Chromosome2	9458208	C	1	g	J	0	*	*	2	,g	JJ	0	*	*	1	,	A
+Chromosome2	9458345	C	1	t	F	0	*	*	2	,t	JH	0	*	*	2	,,	JJ
+Chromosome2	9534990	A	0	*	*	1	,$	A	2	,-1t,-1t	JJ	2	,-1t,-1t	FJ	0	*	*
+Chromosome2	9631371	A	1	C	J	1	G	F	0	*	*	2	C,	Jf	0	*	*
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+Chromosome2	9903467	T	0	*	*	0	*	*	1	.	J	2	.C	FJ	1	C	J
+Chromosome2	9903661	T	0	*	*	0	*	*	1	,	J	2	c,	JJ	1	c	J
+Chromosome2	9903694	G	0	*	*	0	*	*	1	,	J	2	c,+6atactc	FA	1	c	J
+Chromosome2	9951217	C	1	.-4ATAA	J	0	*	*	1	.-4ATAA	J	1	,	s	0	*	*
+Chromosome2	9968732	T	0	*	*	2	GG	ss	2	.G	kJ	2	G.	JJ	0	*	*
+Chromosome2	9968775	G	0	*	*	2	AA	ss	1	,	J	2	.a	sJ	0	*	*
+Chromosome2	9968795	G	0	*	*	2	CC	ss	1	,	J	2	.c	sJ	0	*	*
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+Chromosome2	10089696	G	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,	F
+Chromosome2	10410432	C	1	.-2AA	J	1	.-2AA	J	0	*	*	1	.-2AA	J	0	*	*
+Chromosome2	10410777	T	1	,	J	1	,-1a	J	0	*	*	1	,-1a	F	0	*	*
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+Chromosome2	10503339	G	0	*	*	1	A	o	0	*	*	2	..	ss	2	.A	ss
+Chromosome2	10503360	C	0	*	*	1	T	s	0	*	*	2	..	os	2	.T	ss
+Chromosome2	10503403	A	0	*	*	1	G	s	0	*	*	2	..	sj	2	.G	so
+Chromosome2	10503410	G	0	*	*	1	A	s	0	*	*	2	..	oj	2	.A	ss
+Chromosome2	10503431	C	0	*	*	1	t	J	0	*	*	2	,,	JJ	2	,t	JJ
+Chromosome2	10503444	G	0	*	*	1	,	J	0	*	*	2	a,	JJ	2	a,	JJ
+Chromosome2	10629881	T	0	*	*	0	*	*	1	.-1A	J	2	.-1A.-1A	AJ	1	.-1A	J
+Chromosome2	10665763	C	0	*	*	1	,	J	2	g,	JJ	0	*	*	1	g	J
+Chromosome2	11175052	T	1	c	F	2	c,	FJ	0	*	*	3	,c,	JJJ	2	,,	7J
+Chromosome2	11201615	G	2	.A	JA	0	*	*	0	*	*	1	.	J	1	A	J
+Chromosome2	11202408	G	1	A	J	0	*	*	0	*	*	2	..	Fs	2	.A	7J
+Chromosome2	11202684	C	1	t	J	0	*	*	0	*	*	1	,	A	2	t,	<J
+Chromosome2	11202705	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	F<
+Chromosome2	11202711	G	1	a	J	0	*	*	0	*	*	1	,	A	2	a,	FJ
+Chromosome2	11202726	A	1	g	J	0	*	*	0	*	*	1	,	<	2	g,	JF
+Chromosome2	11202732	G	1	a	J	0	*	*	0	*	*	1	,	J	2	a,	JJ
+Chromosome2	11202750	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	JJ
+Chromosome2	11202752	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	AJ
+Chromosome2	11217961	C	1	,	J	1	T	s	2	T,	aJ	0	*	*	0	*	*
+Chromosome2	11217977	T	1	,	6	1	G	s	2	G,	fH	0	*	*	0	*	*
+Chromosome2	11356770	T	1	c	A	1	.	s	0	*	*	0	*	*	2	,c	JF
+Chromosome2	11356793	A	1	c	F	1	.	s	0	*	*	0	*	*	2	,c	JJ
+Chromosome2	11356794	G	1	c	J	1	.	s	0	*	*	0	*	*	2	,c	JF
+Chromosome2	11356821	T	1	c	J	1	.	s	0	*	*	0	*	*	2	,c	JJ
+Chromosome2	11356825	G	1	a	J	1	.	s	0	*	*	0	*	*	2	,a	JJ
+Chromosome2	11385042	A	0	*	*	2	ct	7J	2	tc	JF	0	*	*	2	tc	FF
+Chromosome2	11385147	A	0	*	*	2	,,	JJ	2	g,	JJ	0	*	*	2	g,	JJ
+Chromosome2	11405787	C	0	*	*	2	t,	JJ	1	,	J	2	,t	JJ	0	*	*
+Chromosome2	11409191	G	0	*	*	2	T.	JJ	2	T.	FJ	1	A	J	1	T	J
+Chromosome2	11409344	G	0	*	*	2	at	<J	2	a,	JJ	1	,	J	1	a	J
+Chromosome2	11606040	G	17	..............A..	JJJJJJJJJJAJJJJJJ	11	.....A.....	JFFFJJJJFJJ	17	.....A...........	JJJA<JJJJJJJFJJJJ	3	...	JJJ	11	......A.A..	JJJJJJJA<JJ
+Chromosome2	11834959	C	2	G.	JJ	2	GG	JJ	0	*	*	2	.G	JF	0	*	*
+Chromosome2	11834973	G	1	.-4ACGT	7	2	.-4ACGT.-4ACGT	::	0	*	*	2	..-4ACGT	J:	0	*	*
+Chromosome2	11835031	A	2	G.	JJ	2	GG	JJ	0	*	*	2	.G	JF	0	*	*
+Chromosome2	11835041	G	2	A.	JJ	1	A	J	0	*	*	1	.	J	0	*	*
+Chromosome2	12014080	A	2	c,	AJ	0	*	*	1	,	F	0	*	*	1	c	J
+Chromosome2	12077427	C	0	*	*	1	,	J	2	a,	JJ	0	*	*	1	t	J
+Chromosome2	12083384	A	0	*	*	0	*	*	1	^I.	8	2	G.	JJ	1	G	J
+Chromosome2	12083965	A	1	G	J	0	*	*	0	*	*	1	.	J	2	G.	JJ
+Chromosome2	12083977	T	1	C	J	0	*	*	0	*	*	1	.	J	2	C.	FJ
+Chromosome2	12112193	G	2	.A	<J	1	A	J	1	.	J	0	*	*	0	*	*
+Chromosome2	12112209	G	2	.A	FJ	1	.	J	1	A	J	0	*	*	0	*	*
+Chromosome2	12112501	T	2	,c	JJ	1	c	J	1	,	J	0	*	*	0	*	*
+Chromosome2	12159712	T	1	.-1C	J	0	*	*	1	.	J	0	*	*	1	.-1C	J
+Chromosome2	12323192	G	0	*	*	1	T	J	2	..	JJ	0	*	*	2	T.	JJ
+Chromosome2	12323196	G	0	*	*	1	.	J	2	A.	JJ	0	*	*	2	.A	JJ
+Chromosome2	12323270	C	0	*	*	1	.	s	2	G.	js	0	*	*	2	.G	se
+Chromosome2	12323313	C	0	*	*	1	.	s	2	T.	fs	0	*	*	2	.T	sj
+Chromosome2	12323335	C	0	*	*	1	,	J	2	tt	FJ	0	*	*	2	,t	JJ
+Chromosome2	12838841	C	0	*	*	1	.	J	1	.-1A	J	1	.-1A	J	0	*	*
+Chromosome2	12871162	G	0	*	*	1	.	J	1	T	J	2	.T	AJ	0	*	*
+Chromosome2	12871174	C	0	*	*	1	.	J	1	T	J	2	.T	JJ	0	*	*
+Chromosome2	12871194	G	0	*	*	1	.	J	1	A	J	2	.A	JJ	0	*	*
+Chromosome2	12871216	G	0	*	*	1	T	F	1	A	J	2	TA	JJ	0	*	*
+Chromosome2	12872168	C	0	*	*	0	*	*	1	.-6GCACAG	9	1	.	J	2	..-6GCACAG	J9
+Chromosome2	12872186	G	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	J<
+Chromosome2	12872402	C	0	*	*	0	*	*	1	t	J	1	,	J	2	t,	AF
+Chromosome2	12872403	T	0	*	*	0	*	*	1	c	J	1	,	J	2	c,	J<
+Chromosome2	12872431	C	0	*	*	0	*	*	1	g	J	1	,	F	2	g,	JA
+Chromosome2	12872435	A	0	*	*	0	*	*	1	t	F	1	,	<	2	t,	J<
+Chromosome2	12872436	T	0	*	*	0	*	*	1	a	J	1	,	<	2	a,	FA
+Chromosome2	12872447	A	0	*	*	0	*	*	1	g	J	1	,	<	2	g,	FF
+Chromosome2	12872475	T	0	*	*	0	*	*	1	,-9gcatacgcg	8	1	,	F	2	,-9gcatacgcg,	8F
+Chromosome2	12877695	A	1	,	7	2	,g	F7	0	*	*	0	*	*	1	t	J
+Chromosome2	12896292	C	0	*	*	0	*	*	3	.GG	JJJ	1	G	7	1	.	J
+Chromosome2	12896330	G	0	*	*	0	*	*	3	C..	jJs	1	.	F	1	C	F
+Chromosome2	12896355	G	0	*	*	0	*	*	3	.-4TGGT..	Oos	1	.	k	1	.-4TGGT	8
+Chromosome2	12896404	A	0	*	*	0	*	*	3	..g	ssJ	1	.	f	1	G$	J
+Chromosome2	12896417	G	0	*	*	0	*	*	3	CC,	JJJ	1	C	K	1	,	J
+Chromosome2	12896431	C	0	*	*	0	*	*	3	,tt	JJJ	1	t	J	1	,	J
+Chromosome2	12902590	G	0	*	*	2	.C	J<	2	CC	FJ	0	*	*	1	.	J
+Chromosome2	12919106	T	0	*	*	1	.-1C	E	2	..-1C	FE	0	*	*	1	.	F
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+Chromosome2	120182453	C	1	t	J	2	,,	JF	0	*	*	2	t,	JJ	0	*	*
+Chromosome2	120215239	T	0	*	*	0	*	*	2	.C	FJ	1	.	F	1	C	J
+Chromosome2	120215508	G	0	*	*	0	*	*	2	,t	FJ	1	,	F	1	t	J
+Chromosome2	120215512	T	0	*	*	0	*	*	2	,a	JF	1	,	J	1	a	A
+Chromosome2	120437910	T	1	.	s	1	.-1G	s	0	*	*	1	,-1g	`	0	*	*
+Chromosome2	120441471	C	0	*	*	2	T.	so	0	*	*	1	.	s	3	.T.	sss
+Chromosome2	120441490	C	0	*	*	2	..	ss	0	*	*	1	A	s	3	A..	sos
+Chromosome2	120471646	C	2	,t	JJ	0	*	*	2	tt	FA	0	*	*	1	,	7
+Chromosome2	120614194	G	1	c	J	0	*	*	0	*	*	3	CC,	ssF	1	,	J
+Chromosome2	120681202	T	0	*	*	4	.,-4aggg,-4aggg,	OGG5	0	*	*	2	,,-4aggg	JA	2	,-4aggg,-4aggg	FG
+Chromosome2	120681203	A	1	*	F	4	.**g	`GG5	0	*	*	3	,**	JG@	3	,**	JGG
+Chromosome2	120681204	G	1	*	F	4	.**,	jGG5	0	*	*	3	,**	AG@	3	,**	JGG
+Chromosome2	120681205	G	1	*	F	4	.**,	oGG5	0	*	*	3	,**	FG@	3	,**	JGG
+Chromosome2	120681206	G	1	*	F	4	.**,	sGG5	0	*	*	3	,**	JG@	3	,**	JGG
+Chromosome2	120723600	G	1	.-1C	J	0	*	*	0	*	*	1	.-1C	J	1	.	J
+Chromosome2	120798224	C	3	,,,	JJJ	4	..,t	ssJJ	3	,tt	JJJ	2	t,	JJ	3	,t,	<<J
+Chromosome2	120798275	C	3	,t,	JJJ	4	tt,,	JFJJ	3	,,,	JJJ	2	,t	JJ	2	,t	FJ
+Chromosome2	120804694	T	3	CC.	JJJ	1	C	J	0	*	*	2	..	JJ	0	*	*
+Chromosome2	120804696	T	3	..C	JJJ	1	.	J	0	*	*	2	.C	JJ	0	*	*
+Chromosome2	120804710	A	3	..G	JJJ	1	.	J	0	*	*	3	.G.	sss	0	*	*
+Chromosome2	120804716	C	3	TT.	FJJ	1	T	J	0	*	*	3	...	ses	0	*	*
+Chromosome2	120804722	A	3	CC.	JFJ	1	C	J	0	*	*	3	...	sss	0	*	*
+Chromosome2	120804730	T	2	A.	JJ	1	A	J	0	*	*	3	...	sss	0	*	*
+Chromosome2	120854045	A	3	,gg	JJJ	2	,g	JA	0	*	*	1	g	A	0	*	*
+Chromosome2	121044473	G	1	.	J	0	*	*	2	T.	JF	0	*	*	1	T	9
+Chromosome2	121044859	G	0	*	*	1	a	J	2	,a	JJ	2	A.	so	0	*	*
+Chromosome2	121300837	G	1	.	J	2	AA	JJ	0	*	*	0	*	*	2	.A	JF
+Chromosome2	121300861	G	1	.	J	2	AA	JJ	0	*	*	0	*	*	2	.A	JJ
+Chromosome2	121300884	T	1	.	J	2	CC	JJ	0	*	*	0	*	*	2	.C	JJ
+Chromosome2	121300931	A	1	.	`	2	CC	os	0	*	*	0	*	*	2	.C	sV
+Chromosome2	121300975	A	1	,	A	2	gg	JJ	0	*	*	0	*	*	2	,g	JJ
+Chromosome2	121301041	G	1	,	J	2	aa	JJ	0	*	*	0	*	*	2	,a	JJ
+Chromosome2	121318641	G	0	*	*	2	..	FF	3	..A	JJJ	0	*	*	1	T	J
+Chromosome2	121318711	A	0	*	*	3	...	JeJ	5	.GGG.	FJJFJ	4	...G	JssJ	0	*	*
+Chromosome2	121318938	C	2	t,	JJ	3	*t,	JJJ	5	,,t,,	<JJJJ	3	,,,	JJJ	3	t,,	JJJ
+Chromosome2	121363528	G	0	*	*	0	*	*	2	A.	s\	1	A	s	1	.	s
+Chromosome2	121407164	A	1	.	J	2	.G	Js	0	*	*	0	*	*	1	T	J
+Chromosome2	121407208	C	1	T	J	2	T,	JJ	0	*	*	0	*	*	1	.	A
+Chromosome2	121407235	C	1	T	J	2	T,	J9	0	*	*	0	*	*	1	.	A
+Chromosome2	121460758	T	1	.	J	1	C	J	0	*	*	0	*	*	2	C.	7J
+Chromosome2	121529325	G	0	*	*	4	....	JFJF	0	*	*	1	A	J	3	.-1A..	JJ7
+Chromosome2	121738702	A	0	*	*	1	.-4GTAC	:	1	.-4GTAC	:	1	.	s	0	*	*
+Chromosome2	121738796	C	0	*	*	1	.	s	1	T	j	2	t,	JF	0	*	*
+Chromosome2	121861797	C	1	.	A	0	*	*	3	T..	JJA	0	*	*	2	T.	JJ
+Chromosome2	121862395	C	2	.T	FJ	0	*	*	0	*	*	1	.	A	2	T.	JA
+Chromosome2	121862431	C	3	.TT	<FJ	0	*	*	0	*	*	1	.	J	1	T	A
+Chromosome2	121862447	T	3	.CC	FJA	0	*	*	0	*	*	1	.	<	3	C..	J<J
+Chromosome2	121862518	G	3	..C	7AJ	0	*	*	0	*	*	1	.	F	3	C..	JFs
+Chromosome2	121862690	G	3	,,a	FJJ	0	*	*	0	*	*	1	,	A	2	a,	JF
+Chromosome2	121862714	G	3	t,,	<JJ	0	*	*	0	*	*	1	t	F	2	,,	JJ
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+Chromosome2	121863115	T	0	*	*	0	*	*	4	.CCC	JJJJ	1	C	J	3	C.C	FJJ
+Chromosome2	121863124	C	0	*	*	0	*	*	4	....	JJJF	1	T	s	3	..T	<JJ
+Chromosome2	121863186	G	1	.	J	0	*	*	2	.A	JF	1	A	s	2	.A	JJ
+Chromosome2	121863207	C	1	.	J	0	*	*	3	.GG	JJJ	1	G	s	2	.G	JJ
+Chromosome2	121909638	G	0	*	*	2	..	so	2	A.	Js	2	.A	ss	1	A	J
+Chromosome2	121909731	C	0	*	*	2	,t	JJ	1	a	J	1	,	J	0	*	*
+Chromosome2	121909732	C	0	*	*	2	t,	JJ	1	t	J	1	,	J	0	*	*
+Chromosome2	121983829	G	0	*	*	3	..A	FJJ	1	A	J	3	.A.	JGJ	0	*	*
+Chromosome2	121983851	A	0	*	*	3	..C	<JJ	1	C	J	3	.C.	JJJ	0	*	*
+Chromosome2	121983891	C	0	*	*	3	..T	VsJ	1	T	J	3	...	JJJ	0	*	*
+Chromosome2	121983892	T	0	*	*	3	..A	jsJ	1	A	J	3	...	JJJ	0	*	*
+Chromosome2	121983893	G	0	*	*	3	..A	jsJ	1	A	J	3	...	JJJ	0	*	*
+Chromosome2	121983909	G	0	*	*	3	..C	`ss	1	C	o	3	...	JJJ	0	*	*
+Chromosome2	121983940	C	0	*	*	3	...-15CATGATTTTACTGAA	ssS	1	.-15CATGATTTTACTGAA	S	3	...	sss	0	*	*
+Chromosome2	121983988	T	0	*	*	3	,,c	JJJ	1	c	J	3	,,,	JJJ	0	*	*
+Chromosome2	121984021	T	0	*	*	3	gg,	JJJ	1	,	J	3	g,g	JJJ	0	*	*
+Chromosome2	121984033	T	0	*	*	3	,,c	FFJ	1	c	J	3	,,,	JJJ	0	*	*
+Chromosome2	122037206	G	1	T	J	0	*	*	0	*	*	1	.	J	2	A.	JA
+Chromosome2	122037245	A	1	C	J	0	*	*	0	*	*	1	.	<	2	C.	FA
+Chromosome2	122037248	C	1	A	J	0	*	*	0	*	*	1	.	n	2	AT	JQ
+Chromosome2	122037249	G	1	C	J	0	*	*	0	*	*	1	.	s	2	C.	Jg
+Chromosome2	122037254	T	1	C	J	0	*	*	0	*	*	2	.,	sJ	2	C.	Jo
+Chromosome2	122037272	A	1	T	F	0	*	*	0	*	*	2	.,	sF	2	T.-1C	Vi
+Chromosome2	122037275	G	1	A	J	0	*	*	0	*	*	2	.,	jJ	2	A.	so
+Chromosome2	122037296	A	1	G	J	0	*	*	0	*	*	2	.,	oA	2	GT	`o
+Chromosome2	122037341	C	1	,+3caa	7	0	*	*	0	*	*	2	,+3caa,+3caa	::	2	,+3taa,+3caa	I5
+Chromosome2	122037351	A	1	c	J	0	*	*	0	*	*	2	,,	JJ	2	,c	JF
+Chromosome2	122037371	G	1	a	J	0	*	*	0	*	*	2	,,	JJ	2	,a	JJ
+Chromosome2	122037372	T	1	c	J	0	*	*	0	*	*	2	,,	JJ	2	,c	JJ
+Chromosome2	122087353	G	1	.	J	1	C	J	3	C.C	JJJ	0	*	*	0	*	*
+Chromosome2	122087383	A	1	.	J	1	G	J	3	G.G	JJJ	0	*	*	0	*	*
+Chromosome2	122178484	T	2	,c	JJ	2	aa	JJ	3	c,,	JJF	1	c	J	4	,c,,	JJJJ
+Chromosome2	122182924	T	1	C	J	1	.	k	0	*	*	1	.-3GGC	I	0	*	*
+Chromosome2	122183010	C	2	.A	oJ	3	.A.	sJm	1	T	J	2	..	os	0	*	*
+Chromosome2	122413998	C	1	A	7	1	.	7	0	*	*	3	..A	JJF	0	*	*
+Chromosome2	122574009	A	2	t,	JJ	1	,	J	0	*	*	0	*	*	2	.t	eJ
+Chromosome2	122809621	A	1	,	F	0	*	*	2	,g	JJ	1	g	A	0	*	*
+Chromosome2	122929093	A	2	C.	JJ	1	C	J	0	*	*	0	*	*	1	.	J
+Chromosome2	122929180	T	3	C.c	JJJ	1	C	J	0	*	*	0	*	*	1	.	7
+Chromosome2	122929283	G	2	a,	FJ	1	,	J	0	*	*	0	*	*	1	a	J
+Chromosome2	122929336	C	2	t,	JJ	1	t	J	0	*	*	0	*	*	1	,	J
+Chromosome2	122930736	G	4	.AA.	JJJJ	6	.AA.A.	JJFJJJ	8	.....A..	JFJFJJJF	2	..	JJ	6	...A..	JJJJsJ
+Chromosome2	122930886	A	4	,g,,	JFJJ	7	,,,g,,,	JJAJJJA	8	,,,,,g,,	JJJJAJJF	2	,,	FJ	5	,,,g,	JJJFJ
+Chromosome2	122930947	C	4	g,gg	JJJJ	6	gg,ggg	JJJJJF	8	gaggg,gg	FJJJ7JJA	2	gg	JJ	5	gg,,g	JJJJF
+Chromosome2	123034936	A	2	T.	FF	0	*	*	0	*	*	1	.	F	2	TT	JJ
+Chromosome2	123036715	G	2	.A	JF	0	*	*	1	T	J	0	*	*	3	...	FFF
+Chromosome2	123081812	A	0	*	*	2	G.	JJ	1	.	F	0	*	*	3	..G	7JJ
+Chromosome2	123081992	T	0	*	*	2	,g	JF	1	g	F	0	*	*	3	,,,	JJA
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+Chromosome2	123085231	A	0	*	*	0	*	*	2	,g	FJ	2	Gg	sF	1	,	F
+Chromosome2	123118294	T	1	,	J	0	*	*	1	,-6tcaata	5	2	,-6tcaata,-6tcaata	55	0	*	*
+Chromosome2	123385867	A	1	,	J	1	,-2gg	J	0	*	*	0	*	*	1	,-2gg	J
+Chromosome2	123650207	C	1	.-1A	J	0	*	*	1	.-1A	J	0	*	*	2	.-1A.-1A	JJ
+Chromosome2	123652643	T	2	.C	JJ	2	C.	JJ	1	.	J	0	*	*	0	*	*
+Chromosome2	123652657	A	2	T.	JJ	2	.T	Js	1	T	J	0	*	*	0	*	*
+Chromosome2	123775208	A	0	*	*	2	.G	JJ	1	.	J	0	*	*	5	G.G.G	JJJJJ
+Chromosome2	123775314	A	0	*	*	3	g,,	JJJ	1	,	J	0	*	*	5	,g,,,	JFJJJ
+Chromosome2	123784232	G	1	,	J	0	*	*	0	*	*	2	A.	ss	1	a	J
+Chromosome2	123801432	A	0	*	*	0	*	*	1	G	J	1	.	J	2	.G	AJ
+Chromosome2	123803311	T	0	*	*	0	*	*	3	..C	JJJ	1	.	J	2	.-1A.	AJ
+Chromosome2	123803323	G	0	*	*	0	*	*	3	.A.	FJJ	1	.	J	2	AC	FJ
+Chromosome2	123803368	A	0	*	*	0	*	*	3	GGG	AJs	1	.	J	2	G.	JJ
+Chromosome2	123835514	A	0	*	*	0	*	*	2	G.	os	2	G.	ss	1	G	s
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+Chromosome2	123835583	C	0	*	*	0	*	*	2	,,	JJ	2	g,	JJ	1	T	s
+Chromosome2	123909645	G	0	*	*	1	.	J	2	A.	JA	0	*	*	1	A	J
+Chromosome2	123909714	C	0	*	*	1	G	s	2	.T	JA	0	*	*	1	.	J
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+Chromosome2	123909789	C	0	*	*	1	*	J	2	,t	JJ	0	*	*	1	,	F
+Chromosome2	123911463	G	1	.	J	0	*	*	1	A	F	0	*	*	2	A.	FJ
+Chromosome2	123943841	A	1	.-1T	J	0	*	*	0	*	*	1	.-1T	o	1	.-1T	J
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+Chromosome2	124020413	T	2	.C	<<	0	*	*	2	CC	ss	1	.	s	0	*	*
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+Chromosome2	124020434	C	2	.G	AF	0	*	*	2	GG	ss	1	.	s	0	*	*
+Chromosome2	124020460	T	2	.C	7J	0	*	*	2	CC	ss	1	.	o	0	*	*
+Chromosome2	124219406	A	2	.G	JJ	0	*	*	1	G	J	0	*	*	1	.	F
+Chromosome2	124219560	C	2	,t	JJ	0	*	*	1	,	J	0	*	*	1	t	F
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+Chromosome2	124361091	C	0	*	*	2	.A	JJ	1	.	J	1	*	D	0	*	*
+Chromosome2	124361144	T	0	*	*	2	.C	eo	1	.	J	1	C	V	0	*	*
+Chromosome2	124361155	C	0	*	*	2	.T	fo	1	.	J	1	T	H	0	*	*
+Chromosome2	124361194	A	0	*	*	2	.G	es	1	.	J	1	G	j	0	*	*
+Chromosome2	124484954	T	0	*	*	0	*	*	2	C.	JO	2	..	nn	1	C	J
+Chromosome2	124484970	T	0	*	*	0	*	*	2	C.	so	2	..	oo	1	C	o
+Chromosome2	124484986	A	0	*	*	0	*	*	2	..-1T	js	2	.G	sj	1	.	s
+Chromosome2	124485038	C	0	*	*	0	*	*	2	A.	ss	2	..	ss	1	A	s
+Chromosome2	124485095	T	0	*	*	0	*	*	2	,,-1a	JJ	2	,,	JJ	1	,-1a	J
+Chromosome2	124642794	A	0	*	*	1	G	7	1	.	s	2	g.	7s	0	*	*
+Chromosome2	124642829	A	0	*	*	1	C	s	1	.	s	2	c.	Fo	0	*	*
+Chromosome2	124642833	G	0	*	*	1	C	s	1	.	s	2	c.	JS	0	*	*
+Chromosome2	124660286	C	0	*	*	1	.	F	1	G	J	2	.G	`J	0	*	*
+Chromosome2	124702902	C	0	*	*	1	,	A	0	*	*	2	.A	sR	1	A	o
+Chromosome2	124702944	A	0	*	*	1	,	7	0	*	*	2	.G	sj	1	G	o
+Chromosome2	124791855	A	2	.+1C.+1C	AC	0	*	*	1	.+1C	A	2	.+1C.+1C	CC	0	*	*
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+Chromosome2	124918637	G	0	*	*	1	,	J	4	,,t,	FJJJ	0	*	*	3	t,,	JJJ
+Chromosome2	124918640	C	0	*	*	1	t	J	4	,,,g	JJJJ	0	*	*	3	,t,	JJJ
+Chromosome2	124918655	C	0	*	*	1	t	J	4	,,,t	JJJJ	0	*	*	3	,t,	JJJ
+Chromosome2	124918656	C	0	*	*	1	t	J	4	,,,,	JJJJ	0	*	*	3	,t,	JJJ
+Chromosome2	124918662	C	0	*	*	1	g	J	4	,,,,	JJJJ	0	*	*	3	,g,	JJJ
+Chromosome2	124918663	C	0	*	*	1	g	J	4	,,,t	FJJJ	0	*	*	3	,gt	JJJ
+Chromosome2	124983546	C	2	..+4ATAT	J<	1	.-2AT	J	0	*	*	0	*	*	1	.-2AT	J
+Chromosome2	125011980	T	0	*	*	0	*	*	1	,-2aa	C	1	,-2aa	6	1	,	<
+Chromosome2	125029428	G	2	,t	JJ	0	*	*	1	t	J	1	.	s	0	*	*
+Chromosome2	125029494	C	2	,g	JJ	0	*	*	1	g	J	1	,	J	0	*	*
+Chromosome2	125029513	A	2	tc	JJ	0	*	*	1	c	J	1	,	F	0	*	*
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+Chromosome2	125298596	C	0	*	*	0	*	*	2	.G	FJ	1	.	J	1	A	E
+Chromosome2	125462518	A	3	.G.	JFJ	0	*	*	0	*	*	1	.	J	1	C	F
+Chromosome2	125462561	G	2	.-2AA.-2AA	JJ	0	*	*	0	*	*	1	.-2AA	J	1	.-2AA	J
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+Chromosome2	223768078	C	1	.	<	0	*	*	2	A.	oJ	2	.A	`J	0	*	*
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+Chromosome2	223805618	A	3	G.G	sss	3	GGG	sss	10	..G....G..	ksssss`sss	8	G.G..GG.	sssRso`o	9	.GG...G.G	ssosesssj
+Chromosome2	223996769	G	7	.......	JJJFJJJ	0	*	*	0	*	*	1	A	5	2	T.	77
+Chromosome2	224110733	A	1	.-8CTCAAGGT	Q	0	*	*	0	*	*	1	.	e	1	,-8ctcaaggt	F
+Chromosome2	224112824	A	2	.C	JJ	0	*	*	1	C	J	0	*	*	2	.C	JJ
+Chromosome2	224112836	C	2	..	JJ	0	*	*	1	T	J	0	*	*	2	.A	AJ
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+Chromosome2	224406695	A	1	,	J	0	*	*	5	G,.,g	9JsJJ	0	*	*	2	,G	Js
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+Chromosome2	224629753	A	2	.G	JJ	2	G.	Js	0	*	*	1	.	s	0	*	*
+Chromosome2	224629773	A	2	.C	JJ	2	CG	Js	0	*	*	1	.	s	0	*	*
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+Chromosome2	225478326	T	3	,,-1a,-1a	JJJ	0	*	*	1	,-2aa	J	0	*	*	1	,-1a	J
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+Chromosome2	225665980	T	2	.G	AJ	1	G	J	0	*	*	0	*	*	1	.	7
+Chromosome2	225667093	C	2	G.	JJ	1	.	J	1	G	J	0	*	*	0	*	*
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+Chromosome2	225910354	A	2	G.	JJ	1	.	J	0	*	*	0	*	*	2	.G	JJ
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+Chromosome2	226054314	G	1	.-1A	J	0	*	*	2	.-1A.-1A	JJ	0	*	*	1	.-1A	J
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+Chromosome2	226054508	C	1	a	J	0	*	*	2	a,+4agta	JJ	0	*	*	1	,+4agta	F
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+Chromosome2	226070668	C	1	^].	A	2	.A	JA	2	AA	Fs	0	*	*	0	*	*
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+Chromosome2	226217645	C	1	,+1t	F	3	.+1T,+1t,+1t	JJJ	0	*	*	3	.$.+1T,+1t	RJJ	4	.+1T.+1T,+1t.	JAJJ
+Chromosome2	226279624	A	34	.T........................G.......	JJJJJJJJJJJFFJJJJFJJAJJJJJJJJJJJJJ	12	...T........	JJJJJJJJJJAJ	24	..................T.....	JJJJJJJJJJJJJJJJJJJJJJJJ	20	..........T.........	JJJJJJJJJJJJJJJJJJFJ	39	.........G....T........................	JJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJF
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+Chromosome2	226282284	A	3	...	FJJ	0	*	*	0	*	*	1	T	J	4	T..T	JFJJ
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+Chromosome2	226450632	A	2	.-5TTGTT.-5TTGTT	JJ	0	*	*	1	.-5TTGTT	J	0	*	*	2	..-5TTGTT	<J
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+Chromosome2	226910387	A	3	,gg	JJJ	0	*	*	2	g,	JJ	0	*	*	1	.	s
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+Chromosome2	250344794	T	0	*	*	1	,-1a	J	1	,-1a	J	1	,-1a	J	0	*	*
+Chromosome2	250579791	G	5	....A	JAJJJ	2	T.	JJ	2	..	J<	0	*	*	7	.....A.	JJFJJJJ
+Chromosome2	250579814	T	5	.....	J7JJJ	2	.A	J<	1	A	J	0	*	*	7	.....A.	JJJFJJJ
+Chromosome2	250579815	A	5	TGGGG	JAJFJ	2	G.	JJ	1	.	J	0	*	*	7	.GG.G.G	JJJJJJJ
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+Chromosome2	250579944	C	1	,	J	1	t	J	0	*	*	0	*	*	4	tt.t	JJJJ
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+Chromosome2	250589077	C	1	A	J	2	A.	J<	0	*	*	1	.	J	0	*	*
+Chromosome2	250589311	C	1	g	J	3	g,,	FFJ	0	*	*	1	,	J	0	*	*
+Chromosome2	250589341	G	1	,	J	3	,,a	JAF	0	*	*	1	a	J	0	*	*
+Chromosome2	250841153	C	4	,tt,	JJFJ	1	,	J	0	*	*	4	,,t,	JJJJ	3	t,t	JJJ
+Chromosome2	250965700	T	0	*	*	2	.$C$	gJ	4	C$.$.$.$	Jggc	4	.$.$C$.$	ggJg	2	.$C$	VJ
+Chromosome2	251089785	C	0	*	*	1	G	F	1	.-1G	J	1	.-1G	o	0	*	*
+Chromosome2	251115454	G	0	*	*	1	,	a	0	*	*	2	.A	JJ	1	A	<
+Chromosome2	251115482	G	0	*	*	1	a	s	0	*	*	2	.A	JF	1	.	7
+Chromosome2	251372351	T	0	*	*	1	.	J	1	.-1A	7	0	*	*	1	.-1A	J
+Chromosome2	251551402	T	1	c	J	1	.	s	0	*	*	2	.C	sJ	0	*	*
+Chromosome2	251605468	T	2	..	7J	0	*	*	2	.C	JF	0	*	*	1	C	J
+Chromosome2	251605494	C	2	..	7J	0	*	*	2	.G	J7	0	*	*	1	G	F
+Chromosome2	251605676	G	2	,,	7J	0	*	*	2	a,	J<	0	*	*	1	a	J
+Chromosome2	251612497	G	14	,tt,,tt,t,tt,,	J<JJJAJJJJJJJJ	1	t	J	12	t,ttt,tt,,,t	JJAJJFFJ7JJF	3	t,,	JFJ	8	t,t,,,,,	JFJ7FJJA
+Chromosome2	251612557	A	13	,g,,gg,g,gg,,	JJJAAJJJJJJJJ	1	g	J	13	g,ggg,,gg,,,g	FJJJJJ7JJAJJJ	3	g,,	J7J	8	,gg,,,,,	FJJ<JJJJ
+Chromosome2	252069976	G	2	T.	JJ	1	T	J	1	.	J	0	*	*	0	*	*
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+Chromosome2	252080129	T	0	*	*	2	..	JJ	0	*	*	2	G.	J7	3	GGG	JFJ
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+Chromosome2	252080420	A	0	*	*	3	.gg	oJJ	0	*	*	1	g	J	3	,,,	JJJ
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+Chromosome2	252141805	A	0	*	*	1	,-6gggagg	6	1	,	J	0	*	*	1	,-6gggagg	6
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+Chromosome2	252241802	A	0	*	*	0	*	*	1	G	J	1	.	J	2	.G	FJ
+Chromosome2	252380255	C	2	G,	VJ	0	*	*	1	g	J	0	*	*	1	,	J
+Chromosome2	252380310	G	2	A,	jJ	0	*	*	1	a	J	0	*	*	1	,	F
+Chromosome2	252440231	G	0	*	*	3	C..	oss	2	..	ss	0	*	*	1	C	s
+Chromosome2	252486136	A	2	.G	JJ	0	*	*	0	*	*	1	.	J	1	G	J
+Chromosome2	252486137	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	1	C	J
+Chromosome2	252486162	C	2	.T	JJ	0	*	*	0	*	*	1	.	J	1	T	J
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+Chromosome2	252486176	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	1	C	J
+Chromosome2	252486187	T	2	.G	JJ	0	*	*	0	*	*	1	.	J	1	G	J
+Chromosome2	252486424	G	2	t,	JJ	0	*	*	0	*	*	2	,,	JJ	1	t	J
+Chromosome2	252844176	C	2	,,	JJ	0	*	*	3	,t,	JJJ	0	*	*	3	t,,	FJJ
+Chromosome2	252871443	G	0	*	*	0	*	*	1	.	J	1	,-1t	J	1	.-1T	s
+Chromosome2	253165416	T	0	*	*	1	C	s	0	*	*	1	.	j	2	C.	ss
+Chromosome2	253229050	G	0	*	*	1	.	F	2	A.	JF	0	*	*	3	..A	JJ;
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+Chromosome2	253587578	G	1	.	J	3	.A.	FJJ	0	*	*	2	.A	FJ	0	*	*
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+Chromosome2	253641256	G	2	.A	JA	2	AA	JJ	0	*	*	0	*	*	2	A.	JJ
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+Chromosome2	253789872	C	2	G.	FJ	0	*	*	1	G	J	1	.	J	0	*	*
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+Chromosome2	254134402	G	1	.-2AA	;	0	*	*	1	.-1A	J	0	*	*	1	.-2AA	F
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+Chromosome2	254155337	C	1	.-4CATG	<	1	,	F	1	.-4CATG	<	1	.-4CATG	W	0	*	*
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+Chromosome2	254497449	C	0	*	*	1	.-1A	s	1	.	o	1	.-1A	F	0	*	*
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+Chromosome2	254782078	T	0	*	*	2	.C	F<	0	*	*	1	C	J	1	.	J
+Chromosome2	254782378	G	0	*	*	2	a,	JJ	0	*	*	1	a	J	1	,	F
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+Chromosome2	254782384	T	0	*	*	2	,-1a,	JJ	0	*	*	1	,-1a	<	1	,	J
+Chromosome2	254785899	T	0	*	*	1	.	s	0	*	*	1	.-5GATAG	K	1	,-5gatag	6
+Chromosome2	254799316	G	3	,aa	JJJ	1	,	F	0	*	*	0	*	*	2	a,	JJ
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+Chromosome2	255001300	A	0	*	*	0	*	*	1	T	J	2	T.	AJ	2	..	JJ
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+Chromosome2	255001340	G	0	*	*	0	*	*	1	.	s	2	AT	Rs	2	.T	ss
+Chromosome2	255001358	G	0	*	*	0	*	*	1	,	J	2	,a	<J	2	,a	JJ
+Chromosome2	255047485	C	0	*	*	1	.+1T	J	2	.-1T.-1T	CF	1	.-1T	J	0	*	*
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+Chromosome2	255125184	T	1	C	A	2	C.	JJ	0	*	*	0	*	*	2	.C	JA
+Chromosome2	255125486	A	2	.-1T.-1T	JJ	2	.-1T.-1T	JF	0	*	*	3	.-1T.-1T.-1T	JJJ	1	.-1T	J
+Chromosome2	255125508	T	2	..-1A	JB	2	.-1A.-1A	BF	0	*	*	3	.-1A.-1A.-1A	JJJ	0	*	*
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+Chromosome2	255196432	T	1	.-4GATC	:	1	.-4GATC	S	0	*	*	1	*	H	0	*	*
+Chromosome2	255200957	G	0	*	*	1	,-1a	J	1	,-1a	J	0	*	*	1	,-1a	J
+Chromosome2	255212967	A	0	*	*	2	c,	JJ	0	*	*	1	,	J	3	,,c	JJJ
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+Chromosome2	255332613	T	0	*	*	1	,	A	2	,c	AJ	1	c	J	0	*	*
+Chromosome2	255577596	G	0	*	*	0	*	*	2	AA	JJ	1	.	J	2	.A	JJ
+Chromosome2	255585294	G	0	*	*	1	A	s	2	A.	Js	1	.	7	0	*	*
+Chromosome2	255948329	C	0	*	*	2	.T	JJ	3	..T	JJJ	1	.	J	0	*	*
+Chromosome2	255948407	C	0	*	*	2	.T	ss	3	..T	oso	1	.	s	0	*	*
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+Chromosome2	256100127	C	1	T	J	2	T.	JJ	0	*	*	1	.	F	0	*	*
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+Chromosome2	256359228	G	0	*	*	1	.-1A	s	0	*	*	1	.	s	2	.-1A.-1A	so
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+Chromosome2	256433352	G	1	.-1A	J	0	*	*	1	.-2AA	J	0	*	*	2	..	JJ
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+Chromosome2	256437439	G	0	*	*	1	c	J	1	,	J	0	*	*	2	..-1A	sj
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+Chromosome2	256757252	A	2	.G	JJ	0	*	*	2	GG	sJ	0	*	*	2	TT	<J
+Chromosome2	256902641	T	1	,-1c	H	1	,-1c	H	1	,-1c	H	0	*	*	0	*	*
+Chromosome2	256908255	G	0	*	*	0	*	*	1	,-5tctga	5	1	,	J	1	.-5TCTGA	I
+Chromosome2	256908532	A	0	*	*	1	T	j	2	t,	JJ	0	*	*	1	,	J
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+Chromosome2	256974716	T	0	*	*	2	aa	FA	2	a,	AF	3	,,,	JJJ	0	*	*
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+Chromosome2	257259225	C	1	.-2GA	J	1	.-2GA	J	0	*	*	0	*	*	1	.-2GA	7
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+Chromosome2	257548815	A	1	G	J	0	*	*	1	,	J	3	GG.	Aok	0	*	*
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+Chromosome2	257673025	C	0	*	*	1	T	J	1	.	J	0	*	*	2	T.	JJ
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+Chromosome2	257688529	T	0	*	*	1	c	J	1	,	J	2	,c	FJ	3	c,c	JJJ
+Chromosome2	257724599	G	1	.	J	2	.A	JJ	2	A.	JA	0	*	*	0	*	*
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+Chromosome2	257727975	T	0	*	*	1	.-2TA	Y	3	.-2TA.-2TA.-2TA	77Y	0	*	*	2	.-2TA.-2TA	YY
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+Chromosome3	1326456	C	1	t	J	0	*	*	0	*	*	3	,,,	JJJ	3	,t,	JJJ
+Chromosome3	1326480	C	1	,	J	0	*	*	0	*	*	3	t,,	JJJ	3	,t,	JJJ
+Chromosome3	1603201	C	6	,T....	sFJJFJ	0	*	*	5	..T..	JJJFJ	2	T.	JJ	2	..	FA
+Chromosome3	1603290	G	5	,.A.A	sJF<J	2	A.	FJ	4	A...	JJoJ	2	..	JF	3	A..	JAJ
+Chromosome3	1727920	T	6	GGG.GG	JJJJJJ	10	GGGGGGGGGG	AJJJJJJJJJ	15	GGGGGG.GGGGGGG.	AJJJJJJJJJJJJJs	10	GGG.GGGGGG	JJJoJJJAJJ	12	GG.GGGGGGGGG	FJJJJJJJJJJJ
+Chromosome3	1728035	G	6	,,aa,,	JJJJJJ	11	,,,,aa,,,,,	AAJJJJJJJJJ	14	aa,a,,a,,,,aa,	FJJJJJJJJJJJJJ	9	,,aa,,,,,	JJJJJJJFJ	13	,,a,a,,,aa,aa	JJJJJJJJJFJJJ
+Chromosome3	1728040	T	6	,,gc,,	JJJJJJ	11	,,,,g,,,,,,	FJAJJJJJJFJ	15	cc,,c,,,,,,,g,g	<FJJJFJJJJJJJJF	9	,,gg,g,g,	JJJJJJJJJ	13	c,g,,,,,gg,gg	JJJJJJJJJFFJJ
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+Chromosome3	1956890	T	0	*	*	1	.	k	2	.C	kP	1	C	s	0	*	*
+Chromosome3	1956947	C	0	*	*	1	.	s	2	.G	sk	1	G	s	0	*	*
+Chromosome3	2190575	T	2	A.	os	0	*	*	0	*	*	1	A	j	1	.	s
+Chromosome3	2378313	G	2	A$.$	Jn	5	.$.$A$.$.	nnJns	7	.$A$.$.$.$.$.$	nFjn`nn	3	A$A$.$	9Sj	5	.$A$A$.$a	nJJnJ
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+Chromosome3	3041739	T	0	*	*	1	g	J	0	*	*	3	g.,	JJJ	1	,	J
+Chromosome3	3097674	C	1	,	A	0	*	*	2	G,	sJ	1	G	s	0	*	*
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+Chromosome3	3164449	C	2	t,	JJ	1	.	s	2	T,	sA	3	,.t	FsA	1	t	F
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+Chromosome3	4085387	G	0	*	*	1	T	s	0	*	*	2	.T	Js	2	T.	os
+Chromosome3	4085423	C	0	*	*	1	T	s	0	*	*	2	.t	AJ	2	T.	so
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+Chromosome3	5169918	C	0	*	*	1	.+1T	n	2	.+1T.+1T	qq	0	*	*	2	.+1T.+1T	qU
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+Chromosome3	5169982	C	0	*	*	1	T	d	1	.	s	0	*	*	2	.T	oS
+Chromosome3	5170827	G	0	*	*	1	,-9gagaaataa	6	1	,-9gagaaataa	6	2	.,	sJ	0	*	*
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+Chromosome3	5380240	A	0	*	*	5	.....	oosjo	9	.....C..g	sosjoRVVA	11	.........C.	ssVooooRss`	11	........C..	oossosjosos
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+Chromosome3	5510623	T	1	C	<	0	*	*	2	.C	F?	1	.	s	5	..C..	AJ?JJ
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+Chromosome3	6549346	C	0	*	*	1	,	J	6	,,,+1t,,+1t,+1t	FJEGED	3	,+1t,+1t,+1t	EEE	0	*	*
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+Chromosome3	7164129	C	0	*	*	0	*	*	4	.TTT	JAFJ	6	.T..Tt	JpAJHo	3	...	JJ7
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+Chromosome3	7341118	C	0	*	*	0	*	*	1	T	j	2	A.	js	2	..	os
+Chromosome3	7442102	A	0	*	*	1	,-2ag	5	0	*	*	1	,-2ag	5	1	,-2ag	5
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+Chromosome3	7721682	G	1	,	F	4	,,a,	JJAJ	0	*	*	0	*	*	1	a	J
+Chromosome3	7748070	T	1	.	J	1	.-6GTGGCA	9	0	*	*	0	*	*	1	.-6GTGGCA	9
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+Chromosome3	77934077	G	0	*	*	0	*	*	2	.T	oj	1	.	s	1	T	a
+Chromosome3	77934103	C	0	*	*	0	*	*	2	.T	eo	1	.	s	1	t	J
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+Chromosome3	77934159	A	0	*	*	0	*	*	2	.G	Vs	1	.	o	1	g	F
+Chromosome3	77970214	C	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J	1	,-1t	J
+Chromosome3	78189566	C	0	*	*	0	*	*	2	.T	J<	3	...	JFJ	2	T.	JJ
+Chromosome3	78189697	C	0	*	*	0	*	*	2	,t	JF	3	,,,	JJF	2	t,	AJ
+Chromosome3	78189824	G	0	*	*	0	*	*	1	a	J	1	,	J	2	a,	JJ
+Chromosome3	78212104	C	1	a	J	2	a,	JJ	1	t	J	0	*	*	1	,	A
+Chromosome3	78284878	G	0	*	*	6	,,,,,a	JJJJJJ	3	,,t	JJJ	1	t	J	1	,	<
+Chromosome3	78373098	C	2	..	JJ	3	.G.	JJJ	0	*	*	4	,G..	sJJJ	0	*	*
+Chromosome3	78373186	C	2	..	JJ	3	.A.	JFJ	0	*	*	4	,A..	sFss	0	*	*
+Chromosome3	78373193	C	2	..	JJ	3	.A.	FFJ	0	*	*	4	,A..	sFse	0	*	*
+Chromosome3	78718467	C	0	*	*	0	*	*	2	.-2AT.-2AT	JJ	1	.	j	1	.-2AT	J
+Chromosome3	78720420	T	0	*	*	1	^M.	A	1	C	J	0	*	*	2	C^M.	JA
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+Chromosome3	78720573	G	0	*	*	2	,a	JJ	3	a,,	JJJ	0	*	*	4	,a,,	AJJJ
+Chromosome3	78720588	C	0	*	*	2	,t	JJ	3	ttt	JFJ	0	*	*	4	tt,t	JJFF
+Chromosome3	78720609	C	0	*	*	2	t,	JJ	3	t,,	JAJ	0	*	*	4	,,t,	FJJJ
+Chromosome3	78807172	A	1	,-1g	J	0	*	*	1	.	o	1	,-1g	J	0	*	*
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+Chromosome3	79069677	A	0	*	*	0	*	*	3	.G.	JJJ	1	G	J	2	TG	JJ
+Chromosome3	79069748	C	0	*	*	0	*	*	3	...	JJJ	1	T	F	2	.T	JJ
+Chromosome3	79093924	T	0	*	*	0	*	*	1	.-5ACACA	J	1	.	J	1	.-5ACACA	o
+Chromosome3	79146899	G	0	*	*	1	.-1C	J	2	.A	7s	1	.	F	0	*	*
+Chromosome3	79146907	A	0	*	*	1	C	J	2	.C	Js	1	.	J	0	*	*
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+Chromosome3	79146960	T	0	*	*	1	C	s	2	C,	s<	2	.,	sJ	0	*	*
+Chromosome3	79146991	C	0	*	*	1	G	o	2	G,	oJ	2	.,	sJ	0	*	*
+Chromosome3	79157236	G	1	.-3TAC	J	0	*	*	0	*	*	1	.-3TAC	s	1	.-3TAC	J
+Chromosome3	79489310	G	0	*	*	1	.	A	1	.-1A	J	1	.-1A	J	0	*	*
+Chromosome3	79489353	C	0	*	*	1	.	A	1	.-1A	J	1	.-1A	J	0	*	*
+Chromosome3	79563980	G	0	*	*	1	.	J	2	.T	FA	0	*	*	1	T	J
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+Chromosome3	79690053	G	0	*	*	2	,T	sJ	0	*	*	1	T	s	2	..	JF
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+Chromosome3	79733868	C	1	,	J	0	*	*	1	,-2tt	A	0	*	*	1	,-1t	J
+Chromosome3	80018020	C	1	.-4AAAA	s	0	*	*	2	.-3AAA.-3AAA	FJ	1	.-2AA	s	1	*	<
+Chromosome3	80142037	A	0	*	*	2	g,	JJ	1	,	J	0	*	*	1	g	J
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+Chromosome3	80199736	C	1	a	J	0	*	*	0	*	*	1	t	J	3	,tt	JJJ
+Chromosome3	80240800	C	1	.	s	0	*	*	2	tt	JJ	2	.T	as	0	*	*
+Chromosome3	80240801	A	1	.	s	0	*	*	2	tt	JJ	2	.G	os	0	*	*
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+Chromosome3	80533962	C	0	*	*	0	*	*	2	.T	sJ	1	.	s	1	T	J
+Chromosome3	80533967	T	0	*	*	0	*	*	2	.C	sJ	1	.	s	1	C	J
+Chromosome3	80533972	G	0	*	*	0	*	*	2	.A	sJ	1	.	s	1	A	J
+Chromosome3	80534060	T	0	*	*	0	*	*	3	,.G	JoF	2	.G	sJ	1	.	s
+Chromosome3	80534084	T	0	*	*	0	*	*	4	,.C,	AsJj	2	,C	AJ	1	.	s
+Chromosome3	80534085	A	0	*	*	0	*	*	4	,$G.,	>sJj	2	,$.	>J	1	G	s
+Chromosome3	80534115	T	0	*	*	0	*	*	3	C,,	FJs	1	C	J	1	,	J
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+Chromosome3	80916980	A	0	*	*	3	...	sos	2	G.	sk	1	G	s	0	*	*
+Chromosome3	80918577	A	6	TT..T.	<JF<JJ	4	.T.T	JJJJ	1	T	J	4	TT..	JJJJ	5	T....	JJJJJ
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+Chromosome3	80940979	A	1	.	J	0	*	*	0	*	*	2	.-1T.-1T	ss	2	.-1T.	jR
+Chromosome3	80965642	T	2	C.	JJ	2	GC	<J	1	C	J	0	*	*	0	*	*
+Chromosome3	80965741	T	2	.C	sj	2	CC	oj	1	.	s	0	*	*	0	*	*
+Chromosome3	80965847	G	2	,-1c,	JJ	2	,,	JJ	1	,-1c	J	0	*	*	0	*	*
+Chromosome3	81076154	C	1	.-1A	J	0	*	*	0	*	*	2	.-1A.-1A	JF	1	.-1A	J
+Chromosome3	81076188	A	1	.	s	0	*	*	0	*	*	2	.C	so	1	C	o
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+Chromosome3	81076218	C	1	t	J	0	*	*	0	*	*	2	.t	jJ	1	,	J
+Chromosome3	81076291	T	1	c	J	0	*	*	0	*	*	2	,c	JJ	1	,	J
+Chromosome3	81076301	C	1	,$	I	0	*	*	0	*	*	2	,-2ag,-2ag	II	1	,-2ag	I
+Chromosome3	81150642	G	4	,,+1a,+1a,+1a	JJJJ	9	,$,,,,,+1a,+1a,+1a,+1a	AAJJJFJE7	7	,+1a,+1a,+1a,+1a,+1a,+1a,+1a	FJJAJJF	20	,$,,,,,,+1a,+1a,+1a,+1a,+1a,+2aa,+1a,+1a,+1a,+1a,+1a,+1a,+1a,+1a	AFJJJJJJJJJAJJJJJJJJ	6	,+1a,+1a,+1a,,,+1a	JJJJJF
+Chromosome3	81150764	C	0	*	*	3	,+1a,+1a,+2aa	JJJ	2	,,+1a	FF	0	*	*	2	,+1a,+1a	JJ
+Chromosome3	81175421	G	0	*	*	0	*	*	1	T	F	1	.	J	2	.T	FF
+Chromosome3	81175422	A	0	*	*	0	*	*	1	G	F	1	.	J	2	.G	JF
+Chromosome3	81175442	G	0	*	*	0	*	*	1	.	F	1	A	F	2	.A	FJ
+Chromosome3	81263705	A	0	*	*	2	..	je	0	*	*	3	.,g	RJJ	1	G	j
+Chromosome3	81263711	A	0	*	*	2	G$G$	JJ	0	*	*	3	gg,	JFJ	1	.$	V
+Chromosome3	81268217	A	9	,ttt,tt,t	JJJJJJJFJ	1	.	s	3	ttt	JJA	2	,t	<J	10	,tt,tttt,t	FJFJJJJFJJ
+Chromosome3	81467459	T	2	.A	JJ	0	*	*	0	*	*	2	A.	JJ	2	A.	JJ
+Chromosome3	81467530	C	2	..	JJ	0	*	*	0	*	*	2	.T	JJ	2	.T	JJ
+Chromosome3	81625239	G	0	*	*	0	*	*	2	a,	JJ	1	a	J	1	,	7
+Chromosome3	81674493	G	1	A	J	0	*	*	2	,A	os	2	..	FJ	0	*	*
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+Chromosome3	81674557	G	1	C	J	0	*	*	2	,C	Vs	1	.	J	0	*	*
+Chromosome3	81674560	G	1	A	F	0	*	*	2	,A	ss	1	.	J	0	*	*
+Chromosome3	81731518	T	1	c	J	2	c,	JJ	2	c,	AJ	0	*	*	3	,,,	FJJ
+Chromosome3	81796758	G	1	,	A	0	*	*	2	,a	JJ	0	*	*	1	a	J
+Chromosome3	81796787	G	1	,	J	0	*	*	2	,a	JJ	0	*	*	1	a	J
+Chromosome3	81955183	A	2	g,	FJ	0	*	*	1	,	J	0	*	*	1	g	J
+Chromosome3	82102078	T	0	*	*	0	*	*	1	.	F	1	.-4CCAG	s	1	.-4CCAG	J
+Chromosome3	82103833	G	0	*	*	0	*	*	1	.	o	2	A.	Zs	1	A	s
+Chromosome3	82103834	T	0	*	*	0	*	*	1	.	s	2	A.	Zs	1	A	s
+Chromosome3	82103843	C	0	*	*	0	*	*	2	,a	JJ	1	,	J	1	A	s
+Chromosome3	82240421	T	1	.-4CCCC	F	1	,-4cccc	J	0	*	*	1	.	V	0	*	*
+Chromosome3	82310206	C	1	,	J	0	*	*	2	g,	JF	0	*	*	3	g,,	JJJ
+Chromosome3	82420992	G	0	*	*	2	,,	JJ	3	,a,	JJA	0	*	*	2	a.	JJ
+Chromosome3	82435637	T	0	*	*	1	.	J	0	*	*	2	C.	FJ	1	C	J
+Chromosome3	82435776	G	0	*	*	1	,	J	0	*	*	2	a,	JJ	1	a	F
+Chromosome3	82488900	C	3	..A	JAJ	1	A	F	0	*	*	0	*	*	1	.	F
+Chromosome3	82488950	C	3	T..	J<A	1	.	J	0	*	*	0	*	*	1	T	F
+Chromosome3	82488982	T	3	..C	JJJ	1	C	J	0	*	*	0	*	*	1	.	J
+Chromosome3	82488992	C	3	T..	J<J	1	.	F	0	*	*	0	*	*	1	T	A
+Chromosome3	82489064	C	3	,t,	JJJ	1	,	J	0	*	*	0	*	*	1	t	J
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+Chromosome3	82489178	A	3	,$g,$	>J>	1	,$	>	0	*	*	0	*	*	1	g	A
+Chromosome3	82695980	T	2	,c	JF	2	,c	JJ	3	,,C	JFJ	1	,	J	1	c	J
+Chromosome3	82895275	A	2	..	JJ	0	*	*	4	.C.C	JJJJ	1	C	s	0	*	*
+Chromosome3	82895281	C	2	GG	JJ	0	*	*	4	G.G.	JJJJ	1	.	s	0	*	*
+Chromosome3	82895284	G	2	.-2CA.-2CA	JJ	0	*	*	4	.-2CA..-2CA.-2CA	JJJJ	1	.	s	0	*	*
+Chromosome3	82895294	C	2	TT	:>	0	*	*	4	T.TT	:J>=	1	.	s	0	*	*
+Chromosome3	82895324	T	2	.+3GAA.+3GAA	JJ	0	*	*	3	.-3GAA.+3GAA.	Js<	1	.-3GAA	s	0	*	*
+Chromosome3	82895349	A	2	GG	sj	0	*	*	4	G.G.	oVsL	1	.	s	0	*	*
+Chromosome3	82895354	A	2	CC	so	0	*	*	4	C.Cc	eos7	1	.	o	0	*	*
+Chromosome3	82895372	C	2	,,	F7	0	*	*	4	.,g,	sFFJ	1	g	J	0	*	*
+Chromosome3	82895380	A	2	,-5agaat,-5agaat	66	0	*	*	4	.,-5agaat,-5agaat,	s56J	1	,	J	0	*	*
+Chromosome3	82895617	A	1	.-2GC	E	0	*	*	0	*	*	2	.-2GC.-2GC	oo	1	.-2GC	G
+Chromosome3	82896097	C	1	,-4ccta	E	1	,-4ccta	@	0	*	*	1	.-4CCTA	H	1	,-4ccta	7
+Chromosome3	82912859	A	1	.-1T	A	0	*	*	0	*	*	1	,	J	1	.-1T	J
+Chromosome3	82912909	A	1	G	o	0	*	*	1	.	i	0	*	*	3	G,,	aAA
+Chromosome3	82912922	C	1	t	J	0	*	*	1	.	s	0	*	*	2	t,	FA
+Chromosome3	82912925	A	1	g	J	0	*	*	1	.	e	0	*	*	3	g,,	JJA
+Chromosome3	82912934	A	1	t	J	0	*	*	1	.	o	0	*	*	3	t,,	7FA
+Chromosome3	82912945	C	1	a	J	0	*	*	1	.	s	0	*	*	3	a,,	CJ<
+Chromosome3	82912950	C	1	a	J	0	*	*	1	.	s	0	*	*	3	a,,	<JJ
+Chromosome3	82912969	C	1	g	J	0	*	*	1	.	s	0	*	*	3	g,,	JFF
+Chromosome3	82912980	T	1	c	J	0	*	*	1	.	s	0	*	*	3	c,,	FJJ
+Chromosome3	82914954	T	1	C	J	1	.	J	0	*	*	0	*	*	2	.-1AC	AJ
+Chromosome3	82942750	T	1	a	J	2	,c	AJ	0	*	*	1	c	A	3	,,c	AAJ
+Chromosome3	83309777	C	0	*	*	0	*	*	1	,	J	2	T,	sA	2	,t	JJ
+Chromosome3	83314649	C	1	G	V	0	*	*	0	*	*	1	.	k	2	A.	FJ
+Chromosome3	83504977	A	1	G	j	0	*	*	0	*	*	3	GTT	fss	2	CC	JJ
+Chromosome3	83698670	T	1	C	s	0	*	*	1	.	a	0	*	*	3	..+5CCCGG.	NJV
+Chromosome3	83698696	G	1	T	s	0	*	*	1	.	s	0	*	*	3	.AA	oJo
+Chromosome3	83741086	G	1	t	J	0	*	*	0	*	*	1	,	J	2	T,	sF
+Chromosome3	83846986	T	0	*	*	1	c	<	3	,,c	AJJ	3	,cc	JJF	2	,c	JF
+Chromosome3	83935165	G	3	..A	J<J	1	A	J	0	*	*	0	*	*	2	A.	J7
+Chromosome3	83935172	A	3	..G	JFJ	1	G	J	0	*	*	0	*	*	2	..	JF
+Chromosome3	83935254	C	3	.AT	<AJ	1	T	J	0	*	*	0	*	*	2	..	J7
+Chromosome3	83935275	C	2	.T	<J	1	T	J	0	*	*	0	*	*	1	.	F
+Chromosome3	84017493	C	0	*	*	1	.	J	4	..TT	FJAJ	5	T.T..	JJJJJ	4	T...	JJJJ
+Chromosome3	84413795	T	0	*	*	1	,-2tg	7	1	,-2tg	;	1	,	A	0	*	*
+Chromosome3	84450912	G	1	t	J	1	,	J	0	*	*	2	t,	JF	0	*	*
+Chromosome3	84481492	G	0	*	*	1	.	J	2	T.	J7	0	*	*	2	.T	JJ
+Chromosome3	84481511	A	0	*	*	1	.	J	2	T.	FJ	0	*	*	3	T..	JJJ
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+Chromosome3	95578663	C	1	t	J	0	*	*	0	*	*	1	,	J	2	,t	JJ
+Chromosome3	95636267	C	1	t	J	0	*	*	1	,	J	0	*	*	2	t,	JJ
+Chromosome3	95887937	C	1	g	J	0	*	*	1	.	J	3	,TT	JJJ	0	*	*
+Chromosome3	95887994	C	1	t	J	0	*	*	2	a.	Jj	4	,..,	Jsss	0	*	*
+Chromosome3	95888000	C	1	,	J	0	*	*	2	a.	Js	4	,$AA,	Asss	0	*	*
+Chromosome3	95888017	C	1	,	J	0	*	*	2	g.	As	3	GG,	sss	0	*	*
+Chromosome3	95888020	C	1	,	J	0	*	*	2	,T	Fs	3	..t	sss	0	*	*
+Chromosome3	95888032	A	2	,.	JJ	0	*	*	3	,C.	JsJ	3	..c	sss	0	*	*
+Chromosome3	95888048	A	2	,C	JJ	0	*	*	4	,.C.	JsJ7	3	..,	sss	0	*	*
+Chromosome3	95888049	A	2	g.	JJ	0	*	*	4	gG..	JsJF	3	GGg	sss	0	*	*
+Chromosome3	95900998	T	1	c	F	3	cc,	JJJ	4	.,,,	sAJJ	8	,c,ccccc	FJJJJAJJ	7	,ccc,,,	JJJJJ7J
+Chromosome3	95996791	G	1	a	s	2	TA	JJ	0	*	*	0	*	*	1	.	J
+Chromosome3	96000070	T	1	,	J	0	*	*	1	,-1g	I	0	*	*	1	,-1g	F
+Chromosome3	96092109	C	4	..T.	FAAJ	1	T	J	4	....	<JFs	0	*	*	3	..T	JJJ
+Chromosome3	96210265	C	2	.T	JJ	1	T	J	1	.	J	0	*	*	0	*	*
+Chromosome3	96210407	A	2	ct	JJ	1	t	J	1	c	A	0	*	*	0	*	*
+Chromosome3	96210413	C	2	a,	JJ	1	,	J	1	a	J	0	*	*	0	*	*
+Chromosome3	96225348	A	0	*	*	1	.-1T	<	1	.-1T	J	0	*	*	2	..	JJ
+Chromosome3	96254345	C	1	A	J	2	A.	JJ	0	*	*	1	.	J	0	*	*
+Chromosome3	96254347	A	1	.	J	2	.G	JF	0	*	*	1	G	J	0	*	*
+Chromosome3	96254356	C	1	.	J	2	.G	JF	0	*	*	1	G	J	0	*	*
+Chromosome3	96254374	C	1	.	J	2	.A	JF	0	*	*	1	A	J	0	*	*
+Chromosome3	96254403	A	1	G	J	2	G.	JJ	0	*	*	1	.	J	0	*	*
+Chromosome3	96254424	C	1	.	J	2	.G	JJ	0	*	*	2	GG	J7	0	*	*
+Chromosome3	96254541	G	1	a	J	2	a,	JJ	0	*	*	2	.,	\J	0	*	*
+Chromosome3	96254604	T	1	c	J	2	c,	JJ	0	*	*	1	,	J	0	*	*
+Chromosome3	96254640	C	1	t	J	2	t,	JJ	0	*	*	1	,	J	0	*	*
+Chromosome3	96254642	G	1	a	J	2	a,	JJ	0	*	*	1	,	J	0	*	*
+Chromosome3	96254649	A	1	,	J	2	,g	JJ	0	*	*	1	g	J	0	*	*
+Chromosome3	96359760	C	0	*	*	0	*	*	2	.G	JJ	2	.G	JJ	1	.	J
+Chromosome3	96360083	T	0	*	*	1	g	J	1	,	J	2	g,	7F	0	*	*
+Chromosome3	96360094	C	0	*	*	0	*	*	2	t,	J7	2	t,	<J	1	,	A
+Chromosome3	96360095	C	0	*	*	0	*	*	1	g	J	2	g,	JJ	1	,	A
+Chromosome3	96430239	C	0	*	*	1	.	F	1	G	F	0	*	*	3	..G	JFB
+Chromosome3	96430257	A	0	*	*	1	.	J	1	G	J	0	*	*	3	.GG	JJJ
+Chromosome3	96430274	T	0	*	*	1	A	J	1	.	J	0	*	*	3	C..	J<J
+Chromosome3	96430281	A	0	*	*	1	T	J	1	.	J	0	*	*	3	T..	JAJ
+Chromosome3	96430292	G	0	*	*	1	.+2AA	J	1	T	J	0	*	*	3	..T	JJJ
+Chromosome3	96440738	C	0	*	*	1	,	J	1	a	J	0	*	*	2	,t	JJ
+Chromosome3	96489382	G	1	.-2TC	J	1	.-2TC	J	1	.	F	1	.-2TC	F	0	*	*
+Chromosome3	96494003	C	2	.G	JJ	1	.	<	1	G	s	0	*	*	0	*	*
+Chromosome3	96651696	A	0	*	*	1	.-1T	E	1	.-1T	A	1	.-1T	J	0	*	*
+Chromosome3	96718371	T	2	CC	JJ	5	...CC	JJJJJ	10	.CCC.CC.C.	JJJJJFJJJJ	8	.CC..CC.	JFJsJJJJ	8	C.....C.	JJJJJ7JJ
+Chromosome3	96934743	T	0	*	*	2	G.	JE	2	G.	;s	1	G	J	1	.	J
+Chromosome3	96934756	G	0	*	*	2	A.	Js	1	.	s	1	A	7	0	*	*
+Chromosome3	97073379	G	0	*	*	2	A.	:F	0	*	*	1	.	F	1	A	:
+Chromosome3	97073409	A	0	*	*	2	G.	JJ	0	*	*	1	.	J	1	G	J
+Chromosome3	97113220	C	3	TT.	AJJ	0	*	*	3	A..	JJJ	1	.	F	0	*	*
+Chromosome3	97347903	A	1	T	s	0	*	*	0	*	*	4	TTT,	ssss	2	T.	fs
+Chromosome3	97347945	A	1	g	J	0	*	*	0	*	*	4	G,gg	osJJ	2	.g	sF
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+Chromosome3	97347955	A	1	g	J	0	*	*	0	*	*	4	,g,g	sJJJ	2	.g	sJ
+Chromosome3	97347963	C	1	g	J	0	*	*	0	*	*	4	,ggg	oJJJ	2	.g	sJ
+Chromosome3	97367406	T	1	,	J	1	A	A	2	C.	Js	0	*	*	0	*	*
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+Chromosome3	97437788	C	0	*	*	0	*	*	1	A	J	2	T.	JJ	1	.	s
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+Chromosome3	97487413	C	0	*	*	0	*	*	1	,-1t	F	1	,-1t	J	1	,-1t	F
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+Chromosome3	97711939	G	2	,a	JJ	0	*	*	0	*	*	1	,	J	4	.a,,	sJJJ
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+Chromosome3	156681514	T	0	*	*	1	.-19TTTGCACATACTCAATGAC	C	1	.	o	1	.-19TTTGCACATACTCAATGAC	C	0	*	*
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+Chromosome3	238166011	A	1	.	F	1	C	F	3	C.C	JFF	4	CC..	FFFF	2	.C	FF
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+Chromosome3	353435959	A	5	GGGG.	JJJJ7	1	G	J	7	GG.GG..	JJFJJJA	7	.G...G.	JJJFJJJ	4	G...	JJJJ
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+Chromosome4	18548880	C	0	*	*	0	*	*	2	..	se	2	.T	sV	1	T	o
+Chromosome4	18552344	T	6	CCCC.C	AJJJJJ	1	.	J	0	*	*	0	*	*	1	C	J
+Chromosome4	18582402	T	0	*	*	0	*	*	1	.-1C	F	1	.	\	2	.-1C.-1C	JJ
+Chromosome4	18582433	A	0	*	*	0	*	*	1	.-1T	J	1	,-1t	J	2	.-1T.-1T	JJ
+Chromosome4	18635796	C	3	...	JJJ	9	..T..T...	JJFJFJJJJ	13	....T......T.	JJJJFJJJJJsFJ	10	...TT.....	JJJJJJJsJJ	11	..T.....T..	JFJJJAJ`JJJ
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+Chromosome4	18649124	C	0	*	*	3	T..	JFJ	3	T..	7JJ	0	*	*	2	.T	JJ
+Chromosome4	18649129	C	0	*	*	3	.T.	JFJ	3	...	FJJ	0	*	*	2	T.	JJ
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+Chromosome4	19166974	A	1	.-3GAT	;	0	*	*	1	.	J	0	*	*	1	.-3GAT	;
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+Chromosome4	19690327	A	0	*	*	1	C	J	2	GC	JJ	0	*	*	2	.G	JJ
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+Chromosome4	19724082	A	1	,-2ag	;	0	*	*	0	*	*	2	,-2ag,-2ag	;;	1	,-2ag	;
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+Chromosome4	78365119	A	1	.	F	1	T	J	3	.TT	fsF	0	*	*	3	.,T	FsJ
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+Chromosome4	78506913	C	2	.,	jA	0	*	*	1	T	o	4	.T.,	s<FE	0	*	*
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+Chromosome4	78546477	G	5	a,,,a	JJJJF	0	*	*	0	*	*	3	a,,	JJJ	4	,,,,	FJ<J
+Chromosome4	78546538	T	5	c,,,c	JJJJJ	0	*	*	0	*	*	3	c,,	JFJ	4	,,,,	FJFJ
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+Chromosome4	79151338	A	2	g,	JJ	2	,,	JF	1	g	J	0	*	*	0	*	*
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+Chromosome4	79917078	C	1	.	F	0	*	*	2	.A	FF	0	*	*	4	T...	FFFF
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+Chromosome4	115885266	G	2	A.	JJ	3	.AA	JJJ	3	...	JJJ	2	.A	FJ	0	*	*
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+Chromosome4	117739403	C	1	.	J	2	.-7CGCCGAG.	^J	0	*	*	0	*	*	1	.-7CGCCGAG	7
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+Chromosome4	119389571	T	0	*	*	2	ga	JJ	0	*	*	1	a	J	2	ag	JJ
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+Chromosome4	121301063	C	0	*	*	0	*	*	2	,t	Js	1	t	A	1	.	s
+Chromosome4	121376305	G	2	c,	JJ	0	*	*	1	a	J	2	,,	JJ	0	*	*
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+Chromosome4	121441089	C	2	T.	GJ	0	*	*	1	.	s	1	T	A	0	*	*
+Chromosome4	121470996	C	1	,-1t	F	1	a	<	2	,,	JJ	0	*	*	0	*	*
+Chromosome4	121591722	G	0	*	*	1	C	J	1	.	A	0	*	*	2	.C	JJ
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+Chromosome4	121981088	T	2	..	JJ	0	*	*	0	*	*	4	...c	fsjA	1	c	J
+Chromosome4	122062775	C	0	*	*	3	,,,	JJJ	1	t	J	2	.,-3att	VF	0	*	*
+Chromosome4	122431686	C	0	*	*	1	.	J	2	.-1A.	JJ	0	*	*	1	.-1A	J
+Chromosome4	122453962	G	0	*	*	0	*	*	2	.T	oo	1	.	s	1	T	j
+Chromosome4	122453983	C	0	*	*	0	*	*	2	T.	ss	2	.T	As	1	.	j
+Chromosome4	122454010	C	0	*	*	0	*	*	2	.-2AG.	oo	1	.-2AG	s	1	.	s
+Chromosome4	122454017	G	0	*	*	0	*	*	2	.C	oj	2	C.	As	1	C	o
+Chromosome4	122454020	A	0	*	*	0	*	*	2	*.	=k	2	.*	<=	1	.	s
+Chromosome4	122454021	A	0	*	*	0	*	*	2	*.	=s	1	*	=	1	.	`
+Chromosome4	122454022	T	0	*	*	0	*	*	2	*A	=o	2	A*	7=	1	A	V
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+Chromosome4	122543447	C	1	.	J	1	T	J	2	.T	Ae	0	*	*	0	*	*
+Chromosome4	122558182	C	1	T	F	0	*	*	2	.T	sJ	1	.	s	0	*	*
+Chromosome4	122658581	C	1	.-1T	F	0	*	*	0	*	*	1	.-1T	J	1	.-1T	s
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+Chromosome4	122701989	T	0	*	*	1	.	o	0	*	*	2	GG	so	2	.G	s\
+Chromosome4	122702104	G	0	*	*	1	,	<	0	*	*	2	,$t	FF	2	,a	JA
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+Chromosome4	122734956	A	1	.-12TTGCTCCGGTGT	H	0	*	*	0	*	*	1	.-12TTGCTCCGGTGT	H	1	.-12TTGCTCCGGTGT	H
+Chromosome4	122794637	C	0	*	*	0	*	*	1	.	s	1	T	s	2	T.	os
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+Chromosome4	153202690	C	2	T.	JJ	1	.	J	3	.T.	JJJ	0	*	*	2	.T	AJ
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+Chromosome4	153594949	C	1	.-3CAT	;	1	.	J	0	*	*	1	.-3CAT	;	0	*	*
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+Chromosome4	156197524	C	1	G	J	0	*	*	2	,G	Js	1	.	A	0	*	*
+Chromosome4	156197526	A	1	G	A	0	*	*	2	,G	Fs	1	.	<	0	*	*
+Chromosome4	156550699	A	3	t,t	FJJ	2	,,	J7	0	*	*	0	*	*	3	ttt	JJF
+Chromosome4	156675234	C	0	*	*	2	.T	JJ	1	.	J	0	*	*	1	T	J
+Chromosome4	156675291	T	0	*	*	2	.C	JJ	1	.	J	0	*	*	1	C	J
+Chromosome4	156675317	T	0	*	*	2	.C	JJ	1	.	k	0	*	*	1	C	J
+Chromosome4	156986089	C	0	*	*	0	*	*	2	..	JJ	2	T.	JJ	1	T	J
+Chromosome4	156986324	C	0	*	*	0	*	*	2	,-1t,-1t	JJ	1	,	<	1	,-1t	J
+Chromosome4	157199568	T	1	C	F	0	*	*	2	C.	JJ	1	.	J	0	*	*
+Chromosome4	157199624	G	1	A	J	0	*	*	2	.A	J<	1	.	F	0	*	*
+Chromosome4	157199626	C	1	T	F	0	*	*	2	TA	JF	1	.	J	0	*	*
+Chromosome4	157286442	T	2	.c	sJ	0	*	*	1	c	<	1	.	s	0	*	*
+Chromosome4	157409252	C	2	..	JJ	0	*	*	3	..T	JJJ	0	*	*	3	..T	JJJ
+Chromosome4	157409264	C	2	..	JF	0	*	*	3	..A	JJJ	0	*	*	3	..A	JJJ
+Chromosome4	157409343	T	2	.A	JJ	0	*	*	3	...	JJA	0	*	*	4	G...	FJJJ
+Chromosome4	157445444	C	1	.-2AT	J	0	*	*	1	.-2AT	J	0	*	*	2	.-2AT.-2AT	JJ
+Chromosome4	157636167	G	3	.-8TTACAAAC..	JJJ	1	.-8TTACAAAC	J	1	.	J	0	*	*	0	*	*
+Chromosome4	157636442	G	3	,,,	JJJ	2	C,	sJ	0	*	*	0	*	*	1	c	J
+Chromosome4	158016155	G	1	A	s	0	*	*	1	*	s	2	A.	sk	5	.AAAA	ssoso
+Chromosome4	158016172	C	1	.	s	0	*	*	1	T	s	2	T.	ss	5	.TTT.	sssss
+Chromosome4	158016227	G	1	,	J	0	*	*	1	a	J	2	a,	JJ	5	,,aaa	JJJJJ
+Chromosome4	158039358	G	2	..	ss	0	*	*	2	A.	ss	1	A	o	0	*	*
+Chromosome4	158076290	A	1	t	J	0	*	*	1	c	J	0	*	*	2	,t	JJ
+Chromosome4	158076312	C	1	t	J	0	*	*	1	,	J	0	*	*	3	,,t	FJJ
+Chromosome4	158100799	G	2	t,	JJ	0	*	*	1	,	J	0	*	*	1	t	7
+Chromosome4	158156345	T	1	C	s	0	*	*	0	*	*	1	.	o	3	.C.	s`J
+Chromosome4	158156360	A	1	g	J	0	*	*	0	*	*	1	.	s	3	.gg	JJJ
+Chromosome4	158156555	T	0	*	*	1	.	s	0	*	*	1	C	A	3	..c	AJJ
+Chromosome4	158156590	A	0	*	*	1	.	s	0	*	*	1	G	\	3	.g,	sJ:
+Chromosome4	158158526	C	1	T	J	0	*	*	2	T.	JF	0	*	*	1	.	J
+Chromosome4	158158658	G	1	t	J	0	*	*	3	tt,	7JJ	0	*	*	1	,	J
+Chromosome4	158158697	G	1	a	<	0	*	*	3	aa,	FJJ	0	*	*	1	,	J
+Chromosome4	158364986	T	0	*	*	1	.	J	0	*	*	3	.GG	sss	1	G	V
+Chromosome4	158365023	G	0	*	*	1	.	a	0	*	*	3	ATT	sss	1	A	o
+Chromosome4	158365043	C	0	*	*	1	.	s	0	*	*	3	.TT	sss	1	T	s
+Chromosome4	158365078	G	0	*	*	1	,	F	0	*	*	3	c,c	JJJ	1	c	F
+Chromosome4	158365079	G	0	*	*	1	,	J	0	*	*	3	c,c	JJJ	1	c	F
+Chromosome4	158365088	T	0	*	*	1	,	J	0	*	*	3	a,a	JJJ	1	a	J
+Chromosome4	158430777	C	0	*	*	2	,-11ttggtggtgtt.	Hs	1	g	J	1	T	s	1	,	F
+Chromosome4	158488145	C	2	,,	7J	0	*	*	3	,g,	FJA	0	*	*	2	,t	JF
+Chromosome4	158509716	G	1	c	J	1	.	<	0	*	*	2	T.	AJ	0	*	*
+Chromosome4	158509753	C	1	t	A	1	.	A	0	*	*	2	t.	Aa	0	*	*
+Chromosome4	158509758	G	1	t	>	1	.	7	0	*	*	2	a.	As	0	*	*
+Chromosome4	158626003	G	0	*	*	1	.-2CA	`	1	.-2CA	F	0	*	*	1	,-2ca	F
+Chromosome4	158626039	A	0	*	*	1	.-8GGCCTCCG	f	1	.-8GGCCTCCG	s	0	*	*	1	,-8ggcctccg	J
+Chromosome4	158753279	T	2	.$c	jJ	0	*	*	1	C	s	0	*	*	2	,c	JJ
+Chromosome4	158753385	A	2	,g	JJ	0	*	*	1	,	J	0	*	*	1	g	<
+Chromosome4	158870692	A	1	,-1g	J	0	*	*	1	,-1g	J	0	*	*	1	,-1g	J
+Chromosome4	158953675	C	0	*	*	1	.	J	2	.G	JJ	0	*	*	4	..GG	JJFJ
+Chromosome4	158953736	G	0	*	*	1	.	J	2	.T	FJ	0	*	*	4	..TT	<JJs
+Chromosome4	158953756	G	0	*	*	1	.	`	2	.A	eJ	0	*	*	3	..A	jjs
+Chromosome4	159011544	G	0	*	*	2	,t	JF	0	*	*	1	t	F	1	,	F
+Chromosome4	159011583	G	0	*	*	1	a	<	0	*	*	1	,	<	3	,Aa	JJJ
+Chromosome4	159011615	C	0	*	*	1	g	J	0	*	*	1	,	J	2	,a	JF
+Chromosome4	159164964	C	1	,	J	0	*	*	0	*	*	1	a	J	3	,a,	JJJ
+Chromosome4	159237554	T	1	,	E	0	*	*	1	,-3aga	J	1	.-3AGA	s	1	,-3aga	J
+Chromosome4	159287233	T	0	*	*	1	,	J	0	*	*	1	c	<	2	,c	JJ
+Chromosome4	159313643	G	0	*	*	1	.-14TCCTCTAGCTCCTT	5	1	.-14TCCTCTAGCTCCTT	5	1	.	J	0	*	*
+Chromosome4	159337186	A	44	CCCCCCCCCCCCCCCCCCCC........................	JJJJJFJJJJJJJJJJFJJJFFFFFFFFFFFFFFFFFFFFFFFF	84	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC...........................................	JJJJJJJJJJJJJJJJJ<JJJAJFJJJ7JJJJJJJJJJJFJFFFFFFFFFFFFFFFFFFFFFFFFAAFFAFFAFFF<FFAFFFA	188	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC.....................................................................................................	JJJJJJJJJFJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJ<JJJJ7JJAFJFJJJJJ<F<JFJJFJFJFJJJFJJJ7JJJJJJJJJJFFFFAFFFFFFFFFFFFAFFFFFFFFFFFAFFFFFFFFFF?FFFFFFFFFFFFFFFFFFFFFFFFFFFAFFFAFFFFFFFFFFFFFFFAFFFFFFFFFFFA	111	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC..................................................	JJ<JJJJJJJJF7JJJFFJJJJJJJJAJJJAFFJJJJJJJJJJJJFJJFJJJJJJJJJJJ=FFFFFFAFFFFFFFAFAAFFFFFFAFFFAFFFFFAFFFFAFAFFFA<FFF	137	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC...............................................................	JJJJJJFJJJJJJJJJJJJJJFJJJJFJJFJJJFJJJJJJJJJAFFFJJJJJJJJJJJFJJJJJJFJJJJJJJJFFFFFFFFFFFFFFFFFFFFFFFAFFFFFAFFFFFFFFFFFFFFFAFFFFFFFFFFFAFFFFA
+Chromosome4	159337291	T	47	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA,-6tggcta.-6TGGCTA.-6TGGCTA	CCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCC>	90	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA	CCCCCCCCCCCCCCCC>CCCC9C>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>C>CCCC>CCCCC	201	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..-6TGGCTA	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCC>CCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCC>CCCsCCCCCCCCCCCCCCCC>CCCCCCCCCC>CCCCCCCCCCCCCCCCC>CCCC>CCCCECCCCCCCCCCCCoC	123	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..	CC9CCCCCC>CGCCCCCCCCCCCCC>>CCCCCCCCCCCCCCCCC>CC>CCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCC>CCCCCCC>CCCCCCCCCCCCCCCC>CCCCCCCCss	141	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.	CCCCCC>CCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCRCCCCCCCCC>CCCCCC@C>CCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCs
+Chromosome4	159348438	C	11	,,t.,.t.t..	JJJJJAJAJJJ	12	tt,.,..T,.t.	JJJJJoJeJJsJ	10	t,,..T.,..	JJFJJJsJFF	29	...t,T.A,.t,,..,.t.,,...,t,..	FJoJJssJJJJJJJoJJJJAJJFJJjsJF	8	.,,,..tt	FJJJJJJD
+Chromosome4	159348548	T	5	.c..,	F7JJJ	8	..,.c...	ssJJsJ7J	8	....,..,	JJFsJJJJ	17	,.c.,,c,...,,.,..	FJJsAJJJFJ`JssJJF	5	.,c,,	JJJJJ
+Chromosome4	159348718	G	5	,cc,c	JJJFJ	4	,c,c	JJJJ	5	,,cc,	JJJJJ	10	cc,,ctcccc	AJJJJJJJJF	3	,,,	JJF
+Chromosome4	159351674	G	0	*	*	1	,-1t	J	2	,$,-1t	AJ	2	,-1t,-1t	JJ	0	*	*
+Chromosome4	159354749	A	36	...............................+1G....,	aossssfkjosfsosMssasMssjsj`fssLksWs>	64	...............................................................+1G.	Mo`ssssaossssossFssjsRssseVssojojssojVsoso\jsssssjkeooosssjsRkjs	117	.........................................................+1G.....................+1G.......................................+1G	okssooasoksWs\oVso\kjsssssossssssosjssjRooeVRfk`Mss<9`osSssjsojoRoososRssssssQVssssoVooHooesMjsosssssssesjsVsossVReoj	83	.................................+1G.................................................,	j\osoosCooao``osfssoMsoaeosesojshRoR`ssVsssoossssoWsossss9osooossssjosksosoasoJsssA	93	.........................+1G....................................................................	sjos\oo\oR9jsoVPosfsssssisVVsf`ooskssosesVssssosRRsossojsojssjsosVoosjsaoass\MsskseskjssossMs
+Chromosome4	159354792	A	32	.,t,,,,,,,,,,,,,,,,,,,,,,,,t,,,,	sJJJJJFFJ<JJFAAJJA<FJJAFFFFJJ7JJ	64	T..t,,,,,,,,,t,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,	`ooJJ<JJFJJFFJJJJ<<JJJJJFFJAJJJJFJFAFJAAAJJF7JJJ<FAFJ7JFFJFFJAJJ	112	.T..,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,t,,,,,,t,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,,tt,,,,	oossAJJ<JJJJAJJJFJJJAJ7JF7JJAJJFJ<AJJJFFJJJJ7JJJFA7AFAJJ7AJJJJJF<FFFJJ7JFFJFJ7JFJJJFFJJJ<JA7FJJ7JJJJJJAJ<JAJJJJA	79	...........,,,,,,,,,,,,,,,t,,,,,,,,t,,,t,,,,,,t,,,,,,,,t,,,,,,,,,,t,,t,,t,,,,,,	asjsHossossFJAJFJJFF7JJAFJFFJ7JJAJJJAAAFAJ<7AJ7JJFFJJJFJJFJJJJAJ7FFJFJJFJJFJJ7A	85	.,,,,,,,,,,,,,,,,,,,,t,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,	sJJJFJJJJ<7JJJFFJJJJJFJJJJFFJJ<JJ<7FFFJJJFJAAJJJJFFJJJJJAFFAAJAJFFFA<JJJJJFJFFFFJJF7A
+Chromosome4	159355873	C	0	*	*	1	.	s	2	Gg	XJ	4	gg,G	JJJM	0	*	*
+Chromosome4	159359085	C	1	.	J	0	*	*	2	T.	ss	6	.TT...	sJoJss	3	..T	sJj
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+Chromosome4	221189182	T	1	.-3AAA	J	1	.-1A	<	0	*	*	1	.-1A	s	0	*	*
+Chromosome4	221189361	A	3	,,,-1t	JJJ	1	,-1t	J	0	*	*	0	*	*	1	,-1t	F
+Chromosome4	221252992	G	2	..	JJ	0	*	*	1	A	8	3	.+2CT..	FJJ	0	*	*
+Chromosome4	221290171	G	0	*	*	2	,a	FJ	1	.	s	0	*	*	1	a	F
+Chromosome4	221290189	G	0	*	*	2	,a	AJ	1	.	s	0	*	*	1	a	J
+Chromosome4	221309604	T	1	G	J	0	*	*	2	C.	JJ	0	*	*	1	.	J
+Chromosome4	221309676	A	1	.	F	0	*	*	3	.G.	JJA	0	*	*	1	G	J
+Chromosome4	221309868	A	1	c	J	0	*	*	3	,c,	JAF	0	*	*	1	,	J
+Chromosome4	221387686	C	0	*	*	2	,-1g,$	FF	2	,-1g,-1g	AF	2	,-1g,-1g	FF	0	*	*
+Chromosome4	221415240	G	2	.A	JA	0	*	*	1	A	J	1	.	J	0	*	*
+Chromosome4	221415247	G	2	.C	JJ	0	*	*	1	C	J	1	.	J	0	*	*
+Chromosome4	221415273	C	2	.A	JF	0	*	*	1	A	J	1	.	J	0	*	*
+Chromosome4	221415298	A	2	.G	JJ	0	*	*	1	G	<	1	.	J	0	*	*
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+Chromosome4	221415325	G	2	.A	JF	0	*	*	1	A	F	1	.	J	0	*	*
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+Chromosome4	221463688	T	3	C.C	JJJ	0	*	*	1	.	J	1	C	J	0	*	*
+Chromosome4	221463828	C	3	,-1t,-1t,	A<F	0	*	*	1	,	J	1	,-1t	F	0	*	*
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+Chromosome4	221751050	C	0	*	*	1	.-3TTT	:	3	.-2TT.,-2tt	JsF	0	*	*	1	.-2TT	F
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+Chromosome4	221964088	G	0	*	*	2	,-1a,-1a	JJ	0	*	*	1	,+1a	J	1	,-1a	J
+Chromosome4	222021725	C	1	,-2ag	J	0	*	*	0	*	*	1	,-2ag	J	1	.-2AG	s
+Chromosome4	222038160	T	2	a,	JJ	0	*	*	0	*	*	2	A.	Qs	1	,	J
+Chromosome4	222040386	C	2	,-4gccg,	Is	1	.-4GCCG	I	1	.	s	0	*	*	0	*	*
+Chromosome4	222049181	T	1	c	F	0	*	*	3	CC,	fsJ	0	*	*	1	.	s
+Chromosome4	222049185	T	1	c	F	0	*	*	3	..c	`sJ	0	*	*	1	.	o
+Chromosome4	222058284	G	1	,-1t	J	1	,-1t	F	0	*	*	1	,-1t	J	0	*	*
+Chromosome4	222220509	C	1	.	J	0	*	*	2	.-3TTG.	JA	0	*	*	2	.-3TTG.	FF
+Chromosome4	222220510	T	1	.	J	0	*	*	2	*.	J7	0	*	*	2	*.	JJ
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+Chromosome4	222236267	A	1	g	J	0	*	*	3	.gg	sAF	0	*	*	1	,	J
+Chromosome4	222236321	G	1	c	J	0	*	*	3	.cc	sAJ	0	*	*	1	,	J
+Chromosome4	222236346	A	1	g	F	0	*	*	3	,,g	FFF	0	*	*	1	,	F
+Chromosome4	222316737	A	0	*	*	1	.	J	0	*	*	2	G.	JJ	1	G	J
+Chromosome4	222316799	A	0	*	*	1	.	J	0	*	*	2	G.	JJ	1	G	F
+Chromosome4	222316837	G	0	*	*	1	.	F	0	*	*	2	.-2AT.-2AT	JJ	1	.-2AT	J
+Chromosome4	222317026	G	0	*	*	1	,	J	0	*	*	2	,a	JJ	1	a	J
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+Chromosome4	222317992	T	1	c	F	0	*	*	1	,	J	0	*	*	2	g,	JJ
+Chromosome4	222351039	C	2	.T	JJ	0	*	*	1	T	J	0	*	*	3	...	=JJ
+Chromosome4	222351222	T	2	ag	JJ	2	,,	JJ	1	g	J	2	a,	JJ	4	,g,,	JJFJ
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+Chromosome4	222469894	C	2	.a	JJ	1	,	J	0	*	*	0	*	*	3	AAA	JJJ
+Chromosome4	222471441	A	2	.-1T.	<A	0	*	*	0	*	*	1	.-1T	J	1	.-1T	J
+Chromosome4	222568897	C	0	*	*	2	A.	ss	1	A	o	0	*	*	1	.	s
+Chromosome4	222569347	C	3	T..	JJJ	2	..	JJ	2	T.	JJ	0	*	*	2	TA	J<
+Chromosome4	222593143	C	1	t	J	0	*	*	1	,	J	0	*	*	4	,ttt	JJJF
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+Chromosome4	222632209	C	0	*	*	2	.T	sJ	0	*	*	1	,	j	1	T	F
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+Chromosome4	222632537	T	0	*	*	1	,-2ta	:	0	*	*	1	.	e	2	,-2ta,-2ta	::
+Chromosome4	222711980	A	0	*	*	1	,-4acac	9	0	*	*	2	,-4acac,	9F	3	,-2ac,,	>JF
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+Chromosome4	222788092	T	2	.c	oF	1	.	s	0	*	*	0	*	*	4	,ccc	JJJF
+Chromosome4	222788126	C	2	t,	JJ	1	,	J	0	*	*	0	*	*	4	,,tt	JJJA
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+Chromosome4	250499510	A	102	.$,.,,+2at,+2at.+2AT.+2AT,+2at,+2at,+2at..+2AT,+2at..+2AT.+2AT,,+2at,,+2at,+2at,,+2at,+2at,,,,,,,,,,,,,,,,+2at,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	P7MJ77GM777`77sMMJ7F77J77<JFJFJAJ7JJJJAJ6FJJJJJFJJFJJFJFF777777777777777777777777677776777777777777777	57	..+2AT..+2AT.+2AT..+2AT,+2at.+2AT.+2AT.+2AT,+2at,,,+2at,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	MGoMMoM7MMM7<J7JJJJJJJJAFJFJJJJJJJA7777767776777777777777	81	,$..+2AT,+2at,+2at,+2at,,+2at,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2cg,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,	:sM776J7FJAJJFJFJAJ<JJ777JJ7JJ<JJJFJJJ77777767777?776777777777777777777777777777F	85	.,+2at.+2AT.+2AT..,+2at,.+2AT,,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,,+2at,+2at,+2at,+2at,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	R7MMsf7J7FAJJFJAJJJ7JJJAJFJ7JJ76777777777777777777777676767777777A6776=77777777767777	56	.$.$..+2AT.+2AT,,.+2AT,,,+2at,+2at,,,,,,,,,,,,,+2at,+2at,+2ct,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	cc\MMJJ7JJ777FJJJJ<7JJFJ77;67777777767777677777777777777
+Chromosome4	250499867	C	1	,-1g	7	0	*	*	0	*	*	1	,-1g	A	1	,-1g	J
+Chromosome4	250502357	G	107	,-5ggtga..-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA....-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA......-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA...-5GGTGA	IJ5JJ5555J5555J555J555J55JJ5J555J5555FJ55555J5555555J5J555JJ555AA5JAJ5JF5555555A555F5555J5J`JJJ555J5J5J5JA5	87	.,-5ggtga,-5ggtga.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA...-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA..-5GGTGA....-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA......	J?I55J57555F5JE5J55J55<5J576<5J5AJ5F5JHJ5J555F55555JJJJ555F5JJ555JJJJ5J5J7J5JII55JsJJJJ	122	,-5ggtga,,-5ggtga..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA...-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA	GsIJ55J5J5J555555555J555A5555F5J5J5F555J5J55555555J555JJ5JJ5JJI555J5J55J5F5JIJ555J55JJ5555J555JJ555J555555J5J5J5JJJ555F555	160	,-5ggtga,,-5ggtga,-5ggtga..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA....-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.......-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA....-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA	I`IIF5J575JJ555555J5J5J5J5G55555J555J5FJ5FJJ557F55JJ555FJJ5J5J55555F5FJJsjJ565555JH555JJ555JF5F55J5J5JsJ55F5JJ55JJ555J55J5F55F55<V5555JJ555J5575555JJFJ5F55J5JJ5	135	.-5GGTGA.....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA	5JJAJ555555J5555s5555J5F555F5J5F5555J5J555HJ555J55555JJ5F5555<555J55F5555555555JJ5J55JJ:J5J55555755oJJ5555JJJ55555JH55J55I555JJ5555JJ55
+Chromosome4	250502654	C	99	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJ7JAJJJ<7AFJFFAFJFFA<JJAAFJ<FJFJFFAFJJFJFJJAAJ<7A7AJFJ<<JFJFJAAAAJFF7JAF<JAJJAFJFAJJJ<<F7JFJJFA	68	,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	FAJAJFF<JFJFFJJJ<FJJFJ<JFJJ7<JJAJJAJ<J<<FJAFJ<<FJFJJJJFAJJFAJJ<77JJ7	103	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	FJJJFJ<JJJJ<JAA<FJFJJ<J<FFF7<JAFJFJFJJJFJJF<7AJJFAJJJJFFAJJ7JFAJJJJ7F<JJJF7JJFAAF7FFJJJFFJ7FFFJJ<FFJAJJ	145	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,^I,	JJJJJJFFJJAF<FJJJJAJFFAJJFAFJAF<JJ<JJJFAFJJJFJ7<F7JJJ7FFJAJJAJJJJFFJFJFJ<JJJJJJJJJ<7JJJJJA<F<JJJFF7FJAAJJ<JAJJJJ7JAFJFJJFJJAFJJAJFJJJJJFF<AAFJJFA	126	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJJAF7JAA7JJJAFFJA<FJJJJJFJJF7JJAFA77FJJ7FJJJAA<FFJJFFFFJFJ7FFAJF7AJJF7JAJJAJJ7J<JJFAAJFFFJFJFF7<7JF<FFF<FFJFAFFJA7AA<JJ<JJFJ
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+Chromosome4	250528358	C	0	*	*	2	a,	JJ	0	*	*	1	,	J	1	A	A
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+Chromosome4	250651601	A	1	.	s	0	*	*	0	*	*	1	T	J	3	T.G	JJJ
+Chromosome4	250715884	T	1	,-2ga	7	0	*	*	1	,-2ga	J	1	,-2ga	J	1	,	F
+Chromosome4	250789233	C	1	.	J	2	T.	JJ	3	.TT	J7J	0	*	*	0	*	*
+Chromosome4	250797051	C	1	T	J	0	*	*	0	*	*	1	.	J	2	T.	JJ
+Chromosome4	250797127	C	1	.	J	0	*	*	0	*	*	1	A	J	2	.A	FJ
+Chromosome4	251092433	A	1	t	J	0	*	*	3	,,,	JJJ	0	*	*	3	.+1T,+1t,+1t	sJJ
+Chromosome4	251763052	C	1	.-2TT	J	0	*	*	1	.-2TT	J	1	.-1T	J	0	*	*
+Chromosome4	251763131	G	1	.	J	0	*	*	1	.-1A	s	1	.-1A	A	0	*	*
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+Chromosome4	252183081	G	0	*	*	0	*	*	1	C	J	1	.	J	3	CC.	FJJ
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+Chromosome4	252437908	C	1	g	J	0	*	*	1	.	j	0	*	*	2	.G	JJ
+Chromosome4	252560159	G	0	*	*	1	,	J	0	*	*	2	.a	se	1	A	s
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+Chromosome4	252584694	C	0	*	*	2	G.	JJ	1	.	J	0	*	*	1	G	J
+Chromosome4	252603565	G	1	.-8TCCCATAC	@	0	*	*	1	,-8tcccatac	@	1	.	J	0	*	*
+Chromosome4	252611085	A	1	.	F	2	..-1T	JJ	0	*	*	0	*	*	2	..-1T	7A
+Chromosome4	252611111	C	1	.+1T	J	2	.+1T.	sJ	0	*	*	0	*	*	2	.+1T.	FJ
+Chromosome4	252611250	C	1	a	J	1	,	J	0	*	*	0	*	*	2	a,	7F
+Chromosome4	252611300	G	1	c	J	1	,	J	0	*	*	0	*	*	2	c,	FJ
+Chromosome4	252912680	C	0	*	*	1	.	J	1	.-2AT	B	1	*	H	0	*	*
+Chromosome4	252918181	C	0	*	*	1	.	\	1	.-4ACGT	I	2	.-4ACGT,-4acgt	55	0	*	*
+Chromosome4	252935111	T	0	*	*	0	*	*	1	.-4TAAA	I	1	*	A	1	.-4TAAA	5
+Chromosome4	252974390	T	2	^K.^].	AA	1	.-1A	E	0	*	*	0	*	*	2	C^].	FA
+Chromosome4	252974403	A	2	.G	JJ	1	.	J	0	*	*	0	*	*	2	G.	JJ
+Chromosome4	252974411	T	2	.C	FJ	1	.	J	0	*	*	0	*	*	2	C.	JJ
+Chromosome4	252987988	G	0	*	*	3	a,,	JJJ	1	A	j	0	*	*	1	,	H
+Chromosome4	252988075	A	0	*	*	3	,+1t,+1t,	DDF	2	,+1t,+1t	GG	0	*	*	2	,+1t,+1t	JF
+Chromosome4	253279216	C	0	*	*	1	.-1T	A	1	.	J	1	.-2TT	J	0	*	*
+Chromosome4	253350908	C	1	T	J	1	.	J	0	*	*	2	T.	oJ	0	*	*
+Chromosome4	253460249	G	0	*	*	3	..T	AJJ	3	...	JJJ	5	A..A.	7JJ7J	1	A	J
+Chromosome4	253646426	G	1	.-1A	J	1	.-1A	J	1	.-1A	J	0	*	*	0	*	*
+Chromosome4	253704015	G	1	.	J	2	.C	JJ	2	T.	JJ	1	A	J	0	*	*
+Chromosome4	253813616	A	0	*	*	1	,-1t	J	1	,	7	0	*	*	1	,-1t	F
+Chromosome4	253867697	C	0	*	*	1	,-3ttg	J	0	*	*	1	,-3ttg	J	1	,	J
+Chromosome4	253868539	A	0	*	*	0	*	*	1	C	s	2	..	FF	2	G.	JF
+Chromosome4	253934370	A	2	.G	JJ	1	.	F	0	*	*	1	G	J	3	GG.	JJA
+Chromosome4	253934572	G	2	,t	AF	1	,	F	0	*	*	1	t	A	3	t,t	FJJ
+Chromosome4	253948600	A	1	.-2TC	J	0	*	*	1	.-2TC	F	0	*	*	1	.	J
+Chromosome4	254014622	C	1	.-1A	J	1	.-1A	J	1	.-1A	J	0	*	*	0	*	*
+Chromosome4	254054699	C	3	.T.	JJJ	0	*	*	2	..	sA	0	*	*	2	.T	JF
+Chromosome4	254054711	C	3	.GG	F<J	0	*	*	1	.	s	0	*	*	2	GG	J<
+Chromosome4	254054929	A	3	,,g	JJ<	0	*	*	1	,	J	0	*	*	1	g	J
+Chromosome4	254055055	T	2	c,	JJ	0	*	*	1	c	J	0	*	*	2	c,	JJ
+Chromosome4	254083580	G	1	.-2AC	<	0	*	*	1	.-2AC	<	1	,	J	0	*	*
+Chromosome4	254091986	A	2	G.	JJ	0	*	*	2	G.	JJ	3	...	JJJ	0	*	*
+Chromosome4	254092146	C	2	t,	FJ	0	*	*	2	t,	JJ	3	,,,	FJJ	0	*	*
+Chromosome4	254105809	T	2	g,	<J	0	*	*	0	*	*	1	G	J	2	,,	J7
+Chromosome4	254105814	T	2	a,	JF	0	*	*	0	*	*	1	C	<	2	,,	JF
+Chromosome4	254105825	G	3	c,c	AAJ	0	*	*	0	*	*	1	C	o	2	,,	J7
+Chromosome4	254146883	G	2	.A	JJ	0	*	*	2	..	JF	1	A	J	0	*	*
+Chromosome4	254306395	T	2	G.	JJ	0	*	*	6	....GG	<AJJJJ	2	..	JJ	5	..C..	JFJJR
+Chromosome4	254306584	A	2	,,	JJ	1	g	A	5	gg,,g	JJJJJ	2	,g	JJ	4	,,gg	JFJ7
+Chromosome4	254380228	T	0	*	*	1	C	J	1	.	J	4	.CCC	JJFJ	0	*	*
+Chromosome4	254380230	G	0	*	*	1	A	J	1	.	J	4	..AA	JJJJ	0	*	*
+Chromosome4	254380333	C	0	*	*	2	T.	os	1	.	J	4	..TT	Assj	0	*	*
+Chromosome4	254452814	G	0	*	*	2	.A	JJ	2	.A	JJ	0	*	*	1	.	J
+Chromosome4	254492733	T	2	,g	JF	4	,,,,	7JAJ	2	g,	AJ	0	*	*	1	c	J
+Chromosome4	254554927	G	0	*	*	0	*	*	1	A	H	2	..	JJ	2	A.	FJ
+Chromosome4	254554933	A	0	*	*	0	*	*	1	G	\	2	..	JJ	2	G.	FJ
+Chromosome4	254555002	G	0	*	*	0	*	*	1	A	a	2	..	ss	2	.A	as
+Chromosome4	254555048	C	0	*	*	0	*	*	1	,	F	2	A,	sJ	2	Ta	sF
+Chromosome4	254977298	A	0	*	*	1	.	J	2	.G	JJ	0	*	*	1	G	J
+Chromosome4	255060964	C	3	,,t	JF<	0	*	*	1	t	J	3	,,,	FJJ	3	tt,	JJF
+Chromosome4	255060979	A	3	,,,	J<J	0	*	*	1	g	J	3	,,g	JJJ	3	,g,	JJF
+Chromosome4	255061066	C	3	,t,	JJF	0	*	*	1	t	J	3	t,,	JJJ	3	a,,	JJF
+Chromosome4	255103688	T	7	,,,,,,g	JJJJJJJ	7	,,,,,,g	AJJJJJ<	14	,,,,,ggg,,,,,g	JJJJJJJJJJJJJJ	5	,,,,,	FJJJF	12	,,,,,g,,,,,,	JJJJJJJJJJJJ
+Chromosome4	255112298	G	1	t	5	0	*	*	4	ttt,	555J	0	*	*	1	,	J
+Chromosome4	255192846	C	0	*	*	1	,-2tg	H	1	.	s	1	.-1T	H	0	*	*
+Chromosome4	255223524	C	1	T	J	0	*	*	0	*	*	2	,T	FJ	1	.$	H
+Chromosome4	255273856	T	0	*	*	2	..-1G	JJ	3	...-1G	JJJ	0	*	*	1	.	J
+Chromosome4	255273939	C	0	*	*	3	T..	JFJ	3	..T	JJJ	1	T	J	1	.	A
+Chromosome4	255273960	T	0	*	*	3	AC.	J\o	3	CC.	``o	1	.	s	1	C	h
+Chromosome4	255274027	C	0	*	*	3	T,,	VJJ	3	t,,	JJJ	1	.	s	1	t	J
+Chromosome4	255274048	A	0	*	*	3	gg,	JJJ	3	g,,	JJJ	1	,	J	1	g	J
+Chromosome4	255274073	G	0	*	*	3	t,,	F<J	3	t,,	JJJ	1	,	J	1	a	J
+Chromosome4	255456540	T	2	C.	JJ	2	..	AF	2	.C	JJ	1	C	J	4	C..C	JAJF
+Chromosome4	255541369	A	2	.g	sJ	0	*	*	1	,	J	2	gg	JF	0	*	*
+Chromosome4	255640019	T	1	.-1C	7	1	.-1C	J	1	.-1C	J	0	*	*	0	*	*
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+Chromosome4	255859011	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
+Chromosome4	255859014	G	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
+Chromosome4	255859061	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
+Chromosome4	255859082	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
+Chromosome4	256067675	A	0	*	*	1	C	J	2	..	AA	3	CC.	JFA	0	*	*
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+Chromosome4	256175856	A	2	c,	JJ	0	*	*	0	*	*	2	c,	JJ	1	c	J
+Chromosome4	256175902	G	2	,,	J7	0	*	*	0	*	*	2	,a	JJ	1	t	J
+Chromosome4	256218376	C	1	.	C	1	.-1A	s	0	*	*	0	*	*	1	.-1A	J
+Chromosome4	256274442	C	4	....	JJ7J	0	*	*	4	...T	JJJJ	2	T.	JJ	0	*	*
+Chromosome4	256341303	G	0	*	*	2	A.	sJ	1	.+1A	s	0	*	*	1	A	F
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+Chromosome4	256765580	T	0	*	*	2	.C	sJ	1	C	J	0	*	*	1	.	J
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+Chromosome4	256968673	C	0	*	*	0	*	*	1	,-2aa	J	1	,-2aa	J	1	,-2aa	J
+Chromosome4	257107110	A	1	.	F	0	*	*	2	G.	JF	0	*	*	2	G.	AF
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+Chromosome4	257116935	C	0	*	*	1	,-1t	s	1	,-1t	s	0	*	*	1	,-1t	s
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+Chromosome4	257416198	C	0	*	*	1	.	F	2	T.	JJ	0	*	*	1	T	J
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+Chromosome4	257420903	G	0	*	*	0	*	*	1	.	F	1	T	J	2	.T	FJ
+Chromosome4	257420959	T	0	*	*	0	*	*	1	.	7	1	A	s	2	.A	FJ
+Chromosome4	257432996	A	1	g	J	0	*	*	0	*	*	2	,.	Js	3	g,,	JJJ
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+Chromosome4	257887638	C	1	.	J	0	*	*	2	.T	JJ	3	..T	JoJ	0	*	*
+Chromosome4	257901252	T	1	.-1G	s	2	..	ss	0	*	*	0	*	*	1	.-1G	k
+Chromosome4	257916537	A	0	*	*	1	.-1T	s	0	*	*	1	,-1t	J	1	.-1T	s
+Chromosome4	258007386	A	4	,g,,	FJJJ	2	,g	AJ	3	,gg	AJJ	0	*	*	2	,g	J<
+Chromosome4	258007404	A	5	g,gg,	JJJJJ	2	,g	JJ	3	,,,	JFA	0	*	*	2	g,	JF
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+Chromosome4	258128928	A	2	c,	JJ	2	,,	JJ	3	c,c	JJJ	1	c	F	0	*	*
+Chromosome4	258385850	A	2	.G	JF	1	.	J	1	G	J	0	*	*	0	*	*
+Chromosome4	258385876	C	2	..-3GAG	sJ	1	.	R	1	.-3GAG	s	0	*	*	0	*	*
+Chromosome4	258385877	G	2	T*	sI	1	.	V	1	*	q	0	*	*	0	*	*
+Chromosome4	258385878	A	2	.*	sI	1	.	V	1	*	q	0	*	*	0	*	*
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+Chromosome4	258387310	T	1	,	J	0	*	*	0	*	*	2	c,	JJ	1	c	J
+Chromosome4	258387333	A	1	g	J	0	*	*	0	*	*	2	,g	JJ	1	,	J
+Chromosome4	258387387	C	1	,	J	0	*	*	0	*	*	2	*,	JJ	1	g	J
+Chromosome4	258613747	C	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,+1a	J
+Chromosome4	258667526	A	1	,	J	0	*	*	1	,-1c	F	1	.-1C	a	0	*	*
+Chromosome4	258682527	C	1	.	J	0	*	*	1	T	J	2	.T	JJ	0	*	*
+Chromosome4	258976164	G	0	*	*	1	,	J	2	,t	AJ	0	*	*	3	a,,	JJJ
+Chromosome4	259026925	T	1	.	J	0	*	*	1	.-3AGA	J	0	*	*	3	.-3AGA..	JJJ
+Chromosome4	259030172	A	0	*	*	2	.g	sF	1	.	s	0	*	*	1	G	J
+Chromosome4	259057209	G	16	...A.......AA...	J<JFJFJFJJJJJFJF	6	......	JJJJJJ	14	.AA...........	JJJJ<JA<AJJJJJ	17	A............A...	JJJJJ<JJJJFFJ<AJJ	21	..........A.......A.A	JJAJJJJJJFJFJF<JJsJAJ
+Chromosome4	259097719	G	0	*	*	2	,T	sJ	0	*	*	1	.	o	4	..T.	JJJJ
+Chromosome4	259097887	T	0	*	*	1	c	7	1	,	7	0	*	*	4	c,cc	JJJF
+Chromosome4	259121127	C	0	*	*	0	*	*	1	T	J	1	.	J	3	.T.	JJJ
+Chromosome4	259189600	A	0	*	*	1	,-2ag	;	1	,-2ag	;	0	*	*	2	,-2ag,-2ag	;;
+Chromosome4	259247176	T	1	a	J	0	*	*	1	,	J	0	*	*	3	,,a	JJF
+Chromosome4	259332907	A	2	.T	JJ	1	T	J	0	*	*	0	*	*	1	.	7
+Chromosome4	259332927	A	2	.G	JJ	1	G	A	0	*	*	0	*	*	1	.	7
+Chromosome4	259336125	C	0	*	*	1	G	s	2	.G	ks	1	.$	a	0	*	*
+Chromosome4	259336160	A	0	*	*	1	,-8cttttttt	J	1	,-8cttttttt	J	1	,-8cttttttt	F	0	*	*
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+Chromosome4	259338760	A	0	*	*	0	*	*	1	.-3GAG	G	1	.-3GAG	C	1	.-3GAG	G
+Chromosome4	259340578	T	1	,-8ctagtgcg	6	0	*	*	1	,-8ctagtgcg	6	1	,	J	0	*	*
+Chromosome4	259345540	C	1	,	J	0	*	*	1	t	F	0	*	*	2	T,	s7
+Chromosome4	259547156	G	0	*	*	1	,	J	0	*	*	2	.a	sJ	1	t	F
+Chromosome4	259739613	T	0	*	*	4	C.C.	JJJA	2	..	FJ	1	C	J	2	C.	JJ
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+Chromosome4	259836218	T	0	*	*	1	.	J	1	C	7	0	*	*	3	CG,	JJJ
+Chromosome4	259836219	G	0	*	*	1	.	J	1	.-1A	7	0	*	*	3	.C,	JJJ
+Chromosome4	259836220	A	0	*	*	1	.	J	1	*	8	0	*	*	3	.G,	JFJ
+Chromosome4	259836232	G	0	*	*	1	.	J	1	A	J	0	*	*	3	.Aa	JJJ
+Chromosome4	259836240	C	0	*	*	1	.	7	1	T	J	0	*	*	3	.T,	JJJ
+Chromosome4	259836483	A	0	*	*	1	,	J	2	,g	JJ	0	*	*	2	,g	JF
+Chromosome4	259836532	T	0	*	*	1	,	F	2	c,	:F	0	*	*	1	c	:
+Chromosome4	259893672	A	0	*	*	4	.G..	JJJJ	4	....	JJJF	3	.G.	JFs	3	.GG	JJJ
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+Chromosome5	94228101	T	5	a,,,,	JFJJJ	4	a,,a	JJJJ	0	*	*	3	,,,	JJJ	2	aa	AJ
+Chromosome5	94248319	G	3	,,t	AFJ	0	*	*	1	t	J	0	*	*	1	.	s
+Chromosome5	94248375	G	3	,,a	FJF	0	*	*	1	a	J	0	*	*	1	,	J
+Chromosome5	94267434	A	1	,	J	0	*	*	1	g	J	2	g,	JJ	0	*	*
+Chromosome5	94311989	A	0	*	*	2	GT	Js	1	G	=	0	*	*	2	T.	7J
+Chromosome5	94312000	T	0	*	*	2	CC	Fs	1	.	J	0	*	*	2	C.	F7
+Chromosome5	94342156	T	0	*	*	2	.G	JJ	3	...	55J	0	*	*	1	G	J
+Chromosome5	94350672	A	1	.-1G	7	0	*	*	1	.	A	0	*	*	1	T	7
+Chromosome5	94355207	T	3	,,,	JJJ	0	*	*	1	c	J	2	,c	JJ	0	*	*
+Chromosome5	94355682	T	0	*	*	0	*	*	1	C	s	2	C.	se	1	.	j
+Chromosome5	94355763	G	0	*	*	0	*	*	1	A	s	2	A.	se	1	.	s
+Chromosome5	94355777	G	0	*	*	0	*	*	1	A	s	2	A.	o`	1	.	s
+Chromosome5	94355787	A	0	*	*	0	*	*	1	T	k	2	T.	oj	1	.	o
+Chromosome5	94355943	G	0	*	*	0	*	*	1	A	J	1	.	A	2	A.	sF
+Chromosome5	94356070	A	0	*	*	0	*	*	1	c	J	2	.c	jJ	1	,	<
+Chromosome5	94356071	A	0	*	*	0	*	*	1	g	J	2	.$g	W<	1	,	J
+Chromosome5	94356170	T	0	*	*	0	*	*	1	g	J	1	,	F	2	,G	JJ
+Chromosome5	94356171	A	0	*	*	0	*	*	1	g	J	1	,	A	2	,G	JJ
+Chromosome5	94356186	G	0	*	*	0	*	*	1	a	F	1	,	J	2	,A	JJ
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+Chromosome5	94387759	G	2	..	JJ	1	A	J	0	*	*	3	.A.	JAF	0	*	*
+Chromosome5	94387823	G	2	..	<J	1	A	J	0	*	*	3	.A.	FFJ	0	*	*
+Chromosome5	94387840	T	1	.	J	1	G	J	0	*	*	3	.G.	JeF	0	*	*
+Chromosome5	94387857	G	1	.	e	1	A	J	0	*	*	3	.A.	Jo<	0	*	*
+Chromosome5	94387869	T	2	..	7s	1	C	J	0	*	*	3	.C.	AjF	0	*	*
+Chromosome5	94399671	C	0	*	*	2	.-1A.-1A	GG	1	.-1A	G	2	.-1A.-1A	G7	0	*	*
+Chromosome5	94452255	T	1	.-5TACAG	<	0	*	*	1	.	J	1	.-5TACAG	<	0	*	*
+Chromosome5	94453391	C	1	.	J	0	*	*	1	.-2TT	F	0	*	*	1	.-1T	D
+Chromosome5	94564479	A	0	*	*	1	.	J	1	C	J	4	g...	JJJJ	0	*	*
+Chromosome5	94564582	G	0	*	*	1	A	J	1	.	o	3	.A.	sJo	0	*	*
+Chromosome5	94564596	G	0	*	*	1	a	J	1	,	J	3	.a,	oJJ	0	*	*
+Chromosome5	94564670	A	0	*	*	1	t	J	1	,	J	3	,t,	JJJ	0	*	*
+Chromosome5	94585861	T	1	,-3atc	A	1	,-3atc	A	0	*	*	1	,	J	0	*	*
+Chromosome5	94812088	C	3	.T.	AJJ	0	*	*	3	...	F7J	0	*	*	4	.TT.	AFJJ
+Chromosome5	94889428	C	1	T	s	2	.T	JJ	4	....	ssos	2	T.	sJ	3	T..	RsW
+Chromosome5	94979470	C	0	*	*	3	T.T	JJJ	1	.	F	0	*	*	1	T	J
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+Chromosome5	95072467	C	2	,t	JJ	1	t	J	0	*	*	0	*	*	1	,	F
+Chromosome5	95072498	C	2	,t	<J	1	t	F	0	*	*	0	*	*	1	,	J
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+Chromosome5	95171156	C	0	*	*	0	*	*	2	.t	sJ	2	,t	JF	1	,	J
+Chromosome5	95171162	C	0	*	*	0	*	*	2	.a	sJ	2	,a	F7	1	,	J
+Chromosome5	95171163	T	0	*	*	0	*	*	2	.c	sJ	2	,c	AA	1	,	J
+Chromosome5	95171170	C	0	*	*	0	*	*	2	.a	sJ	2	,a	FJ	1	,	J
+Chromosome5	95171172	C	0	*	*	0	*	*	2	.t	sJ	2	,t	AJ	1	,	J
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+Chromosome5	95171203	C	0	*	*	0	*	*	2	.t	sJ	2	,t	<J	1	,	J
+Chromosome5	95171232	G	0	*	*	0	*	*	2	.c	sJ	2	,c	FJ	1	,	J
+Chromosome5	95266232	G	2	,-1a,	77	1	,-1a	A	1	,-1a	<	1	,	F	2	,-1a,-1a	<F
+Chromosome5	95518942	T	2	.A	FJ	1	A	s	2	.A	oJ	0	*	*	1	.	J
+Chromosome5	95518949	A	2	.G	FJ	1	G	s	3	G.G	JsA	0	*	*	1	.	J
+Chromosome5	95518969	C	2	.T	FJ	1	T	s	3	T.T	FsA	0	*	*	1	.	J
+Chromosome5	95520708	C	1	.	J	0	*	*	1	A	J	0	*	*	5	...A.	JJJFJ
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+Chromosome5	95520912	A	1	,	J	0	*	*	2	,g	JI	0	*	*	5	,,g,,	@J5JJ
+Chromosome5	95534738	G	2	..	JJ	4	A...	JJsJ	0	*	*	4	..A.	JJJJ	4	A.A.	FJJJ
+Chromosome5	95534802	G	2	..	ss	4	A..A	soss	0	*	*	4	..A.	ssss	4	..A.	oo\s
+Chromosome5	95534834	C	2	..	ss	4	..T.	ssss	0	*	*	4	T.T.	ssss	4	T...	ojfj
+Chromosome5	95534908	C	2	,,	JJ	3	,,a	JJJ	0	*	*	3	,,t	FJJ	4	,t,,	JJFJ
+Chromosome5	95703861	T	0	*	*	1	.	J	2	.+1G.	sJ	0	*	*	1	G	s
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+Chromosome5	95703878	A	0	*	*	1	T	J	2	.T	sA	0	*	*	1	.	s
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+Chromosome5	95722191	C	1	T	F	0	*	*	1	.	J	2	.T	JJ	0	*	*
+Chromosome5	95722390	A	1	g	J	0	*	*	1	,	J	2	g,	JJ	0	*	*
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+Chromosome5	95801649	A	0	*	*	1	G	s	6	G.....	kosojo	0	*	*	2	..	so
+Chromosome5	95801678	T	0	*	*	1	c	J	6	,cccc,	JJJJJA	0	*	*	2	,$c	?J
+Chromosome5	95817439	T	1	G	s	0	*	*	1	.	J	2	,C	JJ	0	*	*
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+Chromosome5	96079579	T	0	*	*	0	*	*	1	,	F	2	,c	AJ	1	c	J
+Chromosome5	96080031	C	0	*	*	1	.	s	1	T	s	0	*	*	2	T.	js
+Chromosome5	96080949	C	0	*	*	2	..	JJ	1	T	7	0	*	*	2	.T	JJ
+Chromosome5	96081744	G	0	*	*	1	,	J	3	,a,	FJJ	1	a	J	0	*	*
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+Chromosome5	96200866	A	1	G	J	0	*	*	3	G..	JJJ	0	*	*	1	.	F
+Chromosome5	96200868	C	1	T	J	0	*	*	3	T..	JJJ	0	*	*	1	.	J
+Chromosome5	96200937	G	1	A	7	0	*	*	3	A..	FJJ	0	*	*	1	.	J
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+Chromosome5	96483264	G	0	*	*	1	.-1A	F	1	.-1A	J	0	*	*	1	.-1A	J
+Chromosome5	96483320	C	0	*	*	2	G.	Jj	1	G	F	0	*	*	1	.	7
+Chromosome5	96483641	G	0	*	*	1	,-2ta	F	1	,-2ta	J	0	*	*	1	,-2ta	F
+Chromosome5	96651955	C	1	.	s	0	*	*	3	.T.	ss`	3	.T.	sse	4	...T	sVss
+Chromosome5	96651993	T	1	C	s	0	*	*	3	..C	sso	3	..G	sso	4	.C..	sssV
+Chromosome5	96652022	C	1	T	s	0	*	*	3	...	nss	3	.TT	sss	4	.$.A,	]oVJ
+Chromosome5	96755730	G	2	,-1a,-1a	F<	0	*	*	1	,-1a	J	1	,-1a	J	1	,	J
+Chromosome5	96774986	C	0	*	*	1	.	J	1	.-3TAT	J	1	.-3TAT	F	0	*	*
+Chromosome5	96782695	G	0	*	*	1	.	J	1	.-5GAGAC	6	1	.-5GAGAC	6	0	*	*
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+Chromosome5	96811886	T	2	c,	FJ	2	cc	AJ	3	.cc	eJJ	6	c,cccc	JJJFFJ	8	a,,ccccc	JJ<JAJF7
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+Chromosome5	96924270	G	0	*	*	1	,-1c	=	1	,-1c	7	1	,	J	0	*	*
+Chromosome5	97053481	C	2	.T	JJ	0	*	*	1	T	J	0	*	*	1	.	J
+Chromosome5	97053509	T	2	.C	FJ	0	*	*	2	C.	JJ	0	*	*	1	.	J
+Chromosome5	97240317	G	1	,	F	0	*	*	2	,a	JJ	1	a	J	2	a,	JJ
+Chromosome5	97590188	G	0	*	*	2	.A	ss	0	*	*	1	A	o	1	^D,	B
+Chromosome5	97590227	G	0	*	*	2	.A	js	0	*	*	1	A	s	1	,	J
+Chromosome5	97676554	T	0	*	*	0	*	*	1	C	J	2	.C	AJ	1	.	J
+Chromosome5	97810794	T	1	C	J	0	*	*	0	*	*	1	.	J	2	.C	FJ
+Chromosome5	97821766	T	0	*	*	1	.	J	1	.-1A	J	0	*	*	1	.-1A	J
+Chromosome5	97846313	C	2	,-3atg,-3atg	FJ	0	*	*	2	,-3atg,-3atg	JC	1	,-3atg	J	4	,-3atg,-3atg,-3atg,	JJJJ
+Chromosome5	97925475	G	1	,	J	7	tt,,,,,	JJJJJJJ	5	,,,a,	JJJFJ	7	...,,t,	VssJJJJ	4	,,,t	FJJJ
+Chromosome5	97925558	A	1	,	J	5	,,,c,	JJFJJ	5	cc,ct	JJJJJ	7	,,,cctt	JJJFJAJ	3	ccc	JJJ
+Chromosome5	97936452	A	0	*	*	1	,	J	3	gg,	JJJ	0	*	*	1	g	A
+Chromosome5	98024487	G	2	a,	FJ	0	*	*	0	*	*	1	a	J	2	,,	JJ
+Chromosome5	98155094	G	1	.	J	0	*	*	1	A	J	0	*	*	2	A.	FJ
+Chromosome5	98234503	G	1	A	B	0	*	*	2	.A	jC	1	.	J	0	*	*
+Chromosome5	98234623	C	1	G	e	0	*	*	3	G,G	eJs	1	,	J	0	*	*
+Chromosome5	98234630	C	1	T	`	0	*	*	3	T,T	eJs	1	,	J	0	*	*
+Chromosome5	98237298	T	2	.+2AG.+2AG	JJ	2	,+2ag.	s7	5	.+2AG.+2AG.+2AG..+2AG	JJJJJ	2	.+2AG.+2AG	JJ	7	,+2ag.+2AG.+2AG.+2AG.+2AG.+2AG.+2AG	sJJJJJJ
+Chromosome5	98237307	C	2	.-8ATATTAGT.-8ATATTAGT	JJ	2	,-8atattagt.	sF	5	.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT..-8ATATTAGT	JJJJF	2	.-8ATATTAGT.-8ATATTAGT	AJ	7	,-8atattagt.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT	s7JJJJJ
+Chromosome5	98268367	T	0	*	*	1	C	J	0	*	*	2	C.	<J	1	.	J
+Chromosome5	98268373	G	0	*	*	1	T	J	0	*	*	2	T.	JJ	1	.	J
+Chromosome5	98300190	A	0	*	*	0	*	*	4	....	FFFF	2	.G	F<	2	.G	F<
+Chromosome5	98300205	T	0	*	*	0	*	*	4	CCCC	JJJJ	2	.C	JJ	2	C.	JJ
+Chromosome5	98300210	A	0	*	*	0	*	*	4	GGGG	JJJJ	2	.G	JJ	2	G.	JJ
+Chromosome5	98308426	G	1	a	s	0	*	*	2	a,	sO	1	,	s	0	*	*
+Chromosome5	98308428	C	1	t	s	0	*	*	2	t,	oO	1	,	s	0	*	*
+Chromosome5	98308541	G	1	.	J	0	*	*	4	...A	JJJJ	2	A.	JJ	0	*	*
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+Chromosome5	98308650	G	1	,	J	0	*	*	4	,,,a	7JJJ	2	a,	AJ	0	*	*
+Chromosome5	98308701	C	1	t	J	0	*	*	4	t,,,	JJJF	2	,,	JA	0	*	*
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+Chromosome5	98309029	A	0	*	*	0	*	*	1	g	J	2	.$g	lJ	1	,	J
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+Chromosome5	98309053	C	0	*	*	0	*	*	1	,	J	2	,t	JJ	1	t	J
+Chromosome5	98309130	T	0	*	*	0	*	*	1	c	J	2	c,	JJ	1	,	J
+Chromosome5	98309131	C	0	*	*	0	*	*	1	g	J	2	g,	JJ	1	,	J
+Chromosome5	98354196	G	2	T.	JJ	1	.	F	2	.T	JJ	0	*	*	0	*	*
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+Chromosome5	98567723	T	0	*	*	1	c	J	0	*	*	2	,c	JJ	1	,	F
+Chromosome5	98989255	C	1	T	J	1	.	J	0	*	*	2	T.	<J	0	*	*
+Chromosome5	98989303	C	1	T	J	1	.	J	0	*	*	2	T.	AF	0	*	*
+Chromosome5	98989381	T	1	.	s	2	.C	js	1	c	J	2	.C	Ro	0	*	*
+Chromosome5	98989904	A	0	*	*	0	*	*	2	.T	sJ	1	T	J	1	.	C
+Chromosome5	98989909	G	0	*	*	0	*	*	2	.A	sJ	1	A	J	1	.	s
+Chromosome5	98989981	C	0	*	*	0	*	*	2	.T	s<	1	T	F	1	.	j
+Chromosome5	99108743	C	2	T.	JF	1	T	F	0	*	*	0	*	*	1	.	F
+Chromosome5	99108785	T	2	C.	6J	1	C	F	0	*	*	0	*	*	1	.	F
+Chromosome5	99109009	G	2	a,	JJ	2	.a	sJ	0	*	*	0	*	*	1	,	F
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+Chromosome5	99109082	G	2	a,	FF	2	aa	FF	0	*	*	0	*	*	1	,	F
+Chromosome5	99221612	C	3	T.T	JJA	1	T	J	0	*	*	0	*	*	1	.	J
+Chromosome5	99221634	A	3	T.T	JJF	1	T	J	0	*	*	0	*	*	1	.	F
+Chromosome5	99221660	C	3	T.T	JJF	1	T	J	0	*	*	0	*	*	1	.	F
+Chromosome5	99221669	G	3	C.C	JJJ	1	C	J	0	*	*	0	*	*	1	.	J
+Chromosome5	99296637	C	1	t	F	0	*	*	2	t,	AJ	0	*	*	1	,	J
+Chromosome5	99296668	T	1	a	J	0	*	*	2	ag	FF	0	*	*	1	g	J
+Chromosome5	99468979	C	0	*	*	3	.AT	sJJ	1	.	J	3	TT.	Jss	1	T	J
+Chromosome5	99476547	T	0	*	*	2	G.	JJ	0	*	*	2	..	JF	3	G.G	JJJ
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+Chromosome5	180179882	G	2	..	JJ	7	...-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.	JJ=JJ=F	116	.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA........-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA	===J====J=J=JA=JJF======J=J=<JoJJJj==JJ====J=J==JJ==J==<=====JoJ=J=========J=JJJ===YJ===J===J====J=JJ=JJ===JJ==J==J=	21	.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.......	====J=JJ=JJJ==JJJJJJF	67	..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA......-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..	s==========J=J====J=J==JJJ=J=J===JJJF====A==J=F<==<<====JJJJJ====JJ
+Chromosome5	180180020	A	2	,,	JJ	7	,,,,,,,-1t	JJJJAJJ	115	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,+1t,,..,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,	AJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJssJJJJJJJJJJJJJJJJ7JJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJFJF	20	,,,,,,,,,,,+1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t	JJJJJJJJJJJJJJJJJJJJ	65	,,,,,,,,,,,,,,,,,,,,,,+1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t	JJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJ<JJJJJJJJJF
+Chromosome5	180197439	T	0	*	*	1	C	s	0	*	*	3	C..	oss	1	.	f
+Chromosome5	180197470	C	0	*	*	1	T	s	0	*	*	3	T..	jss	1	.	o
+Chromosome5	180232992	A	1	T	J	0	*	*	1	.	J	0	*	*	2	.T	JJ
+Chromosome5	180394863	T	0	*	*	2	.a	`J	1	.	F	2	.a	sJ	0	*	*
+Chromosome5	180394912	G	0	*	*	2	,,	JJ	2	.a	7J	2	A,	sJ	0	*	*
+Chromosome5	180394927	T	0	*	*	2	,c	JJ	1	,	F	2	.c	sJ	0	*	*
+Chromosome5	180465769	T	6	..C...	JJ<JJJ	3	C..	JJJ	6	...C..	JJAJJJ	4	..C.	JAJF	6	......	JJ<FJJ
+Chromosome5	180465832	C	5	,,t,,	<F7J<	3	,,t	F<;	6	tt,,,,	;7JJFJ	4	G,,,	`JJJ	6	,,t,,,	<J:<AF
+Chromosome5	180556891	C	1	.	J	0	*	*	2	G.	JJ	1	G	J	0	*	*
+Chromosome5	180556974	A	1	.	J	0	*	*	2	.-1T.	JJ	1	.-1T	F	0	*	*
+Chromosome5	180556983	G	1	.	J	0	*	*	2	A.	J<	1	A	J	0	*	*
+Chromosome5	180557007	G	1	.	J	0	*	*	2	C.	JF	1	C	A	0	*	*
+Chromosome5	180557094	T	1	,	J	0	*	*	2	a,	JJ	1	a	J	0	*	*
+Chromosome5	180557095	C	1	,	J	0	*	*	2	t,	JJ	1	t	J	0	*	*
+Chromosome5	180557110	A	1	,	<	0	*	*	2	t,	JJ	1	t	J	0	*	*
+Chromosome5	180557134	G	1	,	J	0	*	*	2	c,	JJ	1	c	J	0	*	*
+Chromosome5	180557135	T	1	,	J	0	*	*	2	c,	JJ	1	c	J	0	*	*
+Chromosome5	180715783	G	1	t	J	0	*	*	0	*	*	2	A,	sJ	1	.	s
+Chromosome5	180805266	G	1	,	J	1	T	\	0	*	*	2	T.	ss	0	*	*
+Chromosome5	180812167	C	0	*	*	0	*	*	1	t	J	2	.,	JJ	3	T..	JJJ
+Chromosome5	180812169	A	0	*	*	0	*	*	1	g	J	2	G,	J<	3	.GG	JJJ
+Chromosome5	180812202	G	0	*	*	1	A	A	2	,A	JJ	3	.,A	aJs	4	...A	7JJJ
+Chromosome5	180812224	C	0	*	*	1	T	J	2	,T	JF	3	A,.	jJs	3	AAT	F<J
+Chromosome5	180812227	G	0	*	*	1	A	<	2	,A	JJ	3	.a.	\Js	3	..A	JJJ
+Chromosome5	180812230	A	0	*	*	1	C	F	2	gC	JJ	3	GgG	oJs	3	TTC	JJJ
+Chromosome5	180812232	G	0	*	*	1	T	A	2	,T	JF	3	.,.	o<s	3	..T	JJJ
+Chromosome5	180812312	G	0	*	*	0	*	*	1	,	J	2	T,	`F	1	t	J
+Chromosome5	180813356	G	2	,c	JF	1	c	J	0	*	*	1	.	s	0	*	*
+Chromosome5	180813360	G	2	,t	JF	1	t	J	0	*	*	1	.	s	0	*	*
+Chromosome5	180813377	T	2	,g	FF	1	g	J	0	*	*	1	,	J	0	*	*
+Chromosome5	180813378	T	2	,g	JF	1	g	J	0	*	*	1	,	J	0	*	*
+Chromosome5	180813389	A	2	,c	FF	1	c	J	0	*	*	1	,$	A	0	*	*
+Chromosome5	180864623	G	2	.T	JJ	0	*	*	0	*	*	1	.	J	2	.T	JJ
+Chromosome5	180864626	A	2	.G	JJ	0	*	*	0	*	*	1	.	J	2	.G	JJ
+Chromosome5	180864640	G	2	.C	JJ	0	*	*	0	*	*	1	.	J	2	.C	JJ
+Chromosome5	180864641	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	2	.C	JJ
+Chromosome5	180864642	G	2	.T	JJ	0	*	*	0	*	*	1	.	J	2	.T	JJ
+Chromosome5	180864775	G	3	aa,	AFJ	0	*	*	0	*	*	2	.,	oJ	2	A.	WJ
+Chromosome5	180864780	G	2	a,	7J	0	*	*	0	*	*	2	.,	sJ	2	.a	JF
+Chromosome5	180864796	C	3	aa,	7JJ	0	*	*	0	*	*	2	.,	sJ	2	.a	jA
+Chromosome5	180864828	T	3	aa,	<AJ	0	*	*	0	*	*	2	.,	sJ	2	.a	jJ
+Chromosome5	180864837	A	2	c,	<J	0	*	*	0	*	*	2	.,	sJ	2	.c	VA
+Chromosome5	180864875	C	2	a,	JJ	0	*	*	0	*	*	2	,,	JJ	1	a	<
+Chromosome5	180864890	C	2	t,	JJ	0	*	*	0	*	*	2	,,	JJ	1	t	J
+Chromosome5	180866174	A	0	*	*	1	G	7	2	G.	JJ	3	...	J7J	0	*	*
+Chromosome5	180866317	A	0	*	*	1	g	J	2	g,	J<	4	.,,,	JFJ7	0	*	*
+Chromosome5	180866364	G	0	*	*	1	,	F	2	,a	JJ	2	t,	JJ	0	*	*
+Chromosome5	180926986	A	2	g,	JJ	1	G	s	0	*	*	0	*	*	1	,	<
+Chromosome5	181020652	A	2	.G	JJ	1	G	J	0	*	*	1	.	J	0	*	*
+Chromosome5	181020683	C	2	.T	JJ	1	T	J	0	*	*	1	.	J	0	*	*
+Chromosome5	181020684	T	2	.G	JJ	1	G	J	0	*	*	1	.	J	0	*	*
+Chromosome5	181020915	C	2	a,	FA	1	g	J	0	*	*	2	.,	sJ	0	*	*
+Chromosome5	181087961	G	1	,	A	0	*	*	1	a	J	0	*	*	2	a,	FJ
+Chromosome5	181090516	T	0	*	*	2	.,-3tgc	s:	1	,-3tgc	:	0	*	*	1	,-3tgc	:
+Chromosome5	181185099	T	0	*	*	0	*	*	1	.-1A	J	1	.	J	2	..-1A	JJ
+Chromosome5	181214822	G	0	*	*	1	A	s	0	*	*	1	.	a	2	A.	ss
+Chromosome5	181314641	A	0	*	*	0	*	*	1	,	A	1	G	s	2	G,	JA
+Chromosome5	181314646	A	0	*	*	0	*	*	1	,	F	1	G	s	2	G,	JJ
+Chromosome5	181314651	C	0	*	*	0	*	*	1	,	<	1	A	s	2	A,	JJ
+Chromosome5	181314673	C	0	*	*	0	*	*	1	t	F	1	.	s	2	.t	JF
+Chromosome5	181314682	T	0	*	*	0	*	*	1	,	J	1	C	s	2	C,	JJ
+Chromosome5	181314690	C	0	*	*	0	*	*	1	,	J	1	T	s	2	T,	JJ
+Chromosome5	181314694	C	0	*	*	0	*	*	1	,	J	1	G	s	2	A,	JF
+Chromosome5	181314698	C	0	*	*	0	*	*	1	,	F	1	A	s	2	A,	JJ
+Chromosome5	181314702	A	0	*	*	0	*	*	1	,	J	2	.+1T,+1t	JJ	2	.+1T,	IJ
+Chromosome5	181314716	C	0	*	*	0	*	*	1	t	F	1	A	s	2	A,	JJ
+Chromosome5	181314736	A	0	*	*	0	*	*	1	,	F	1	C	s	2	C,	sF
+Chromosome5	181390697	A	6	......	AJFAJ<	3	TT.	J<A	3	.TT	JFF	1	T	J	6	...TTT	J7JJJJ
+Chromosome5	181400992	G	4	,,,a	JJJ7	1	,	7	4	.Aa,	ss7F	5	,aa,,	JA7<J	4	,,aa	FFFA
+Chromosome5	181434998	A	0	*	*	1	.	s	0	*	*	2	.G	so	1	G	e
+Chromosome5	181434999	T	0	*	*	1	.	s	0	*	*	2	.C	so	1	C	k
+Chromosome5	181475566	G	9	...AA....	JJJFJJJ7<	3	..A	JJJ	9	.......A.	JJJJJFJJJ	3	A..	F<J	8	........	JFJJJJFF
+Chromosome5	181475591	T	7	C.C...C	J7JJFJJ	3	...	JJJ	9	.C.......	FAJJJJ<J<	3	.CC	JFJ	9	CC.C.C.CC	JJJJJFJJ7
+Chromosome5	181483273	C	2	AA	JJ	0	*	*	5	A..A.	JFJJJ	2	..	JJ	3	.A.	FJJ
+Chromosome5	181483718	G	3	,,,	JJJ	0	*	*	6	a,,,,,	JAJJJJ	3	a,,	CJJ	3	,a,	JAJ
+Chromosome5	181484631	C	1	A	o	1	.	J	4	A...	sFFJ	0	*	*	0	*	*
+Chromosome5	181979765	T	1	a	J	1	,	<	0	*	*	2	.a	sJ	0	*	*
+Chromosome5	181979785	C	1	a	J	1	,	J	0	*	*	2	.a	sJ	0	*	*
+Chromosome5	182024895	G	0	*	*	4	t,,,	JAJJ	1	,	J	0	*	*	2	at	JJ
+Chromosome5	182024917	T	0	*	*	4	a,,,	JJJJ	1	c	J	0	*	*	2	,a	JJ
+Chromosome5	182038861	G	1	T	s	2	.T	Js	0	*	*	0	*	*	2	..	ss
+Chromosome5	182154596	T	3	.C.	JJJ	1	.	J	2	.C	JJ	2	CC	JJ	0	*	*
+Chromosome5	182161623	T	3	.C.	JJJ	0	*	*	1	C	F	0	*	*	6	......	J77JF7
+Chromosome5	182214966	G	24	,,,,,,,,,,,,,,,a,,,,,,,,	FFFFFFFFAFFFFFFFFFFFFFFF	11	,,,,,,,,,,,	FFFFFFFFFFF	21	,,,,,,,,,,,t,,,,,,,,,	FAFFFFFFFFFFFFFFFF7FF	17	,,,,,a,,a,,tt,,,,	FFFFFFFFFFFFFFFFF	25	,,,,a,,,,,,,t,,,,,,,,,,,,	FFFFFFFFFFFFAFFFFFFFFFFFF
+Chromosome5	182276414	G	0	*	*	2	T.	JJ	0	*	*	1	.	s	1	T	A
+Chromosome5	182354951	G	1	,-1a	J	0	*	*	1	,-1a	F	0	*	*	2	,-1a,-1a	JF
+Chromosome5	182363128	A	3	,,G	FJJ	0	*	*	4	,GGG	FoJs	2	GG	ns	0	*	*
+Chromosome5	182363206	T	3	,,G	AAF	0	*	*	4	,GGG	Asos	2	GG	ss	0	*	*
+Chromosome5	182613052	G	0	*	*	3	..T	JJJ	1	A	J	0	*	*	1	.	J
+Chromosome5	182835538	C	0	*	*	1	.-4CGAT	Y	0	*	*	1	.-4CGAT	Y	1	.-4CGAT	Y
+Chromosome5	182844687	A	1	.-1C	F	1	.-1C	<	0	*	*	0	*	*	1	.-1C	J
+Chromosome5	183338587	G	1	C	F	0	*	*	0	*	*	2	..	JJ	4	..C.	JFJJ
+Chromosome5	183435289	C	1	.	J	1	A	J	2	A.	JJ	0	*	*	0	*	*
+Chromosome5	183435343	C	2	.-1T,	QA	1	,	A	1	.-1T	J	0	*	*	0	*	*
+Chromosome5	183435373	T	1	,	F	2	,a	FJ	2	gg	AJ	0	*	*	0	*	*
+Chromosome5	183435414	T	2	,,	JA	2	,g	JJ	1	g	F	0	*	*	0	*	*
+Chromosome5	183435417	T	2	,,	FJ	2	,c	JJ	2	cc	JJ	0	*	*	0	*	*
+Chromosome5	183435419	G	2	,,	JF	2	,c	JF	2	cc	FJ	0	*	*	0	*	*
+Chromosome5	183435421	A	2	,,	JF	2	,t	JJ	2	tt	FJ	0	*	*	0	*	*
+Chromosome5	183435422	T	2	gg	JJ	2	ga	JJ	2	aa	JJ	0	*	*	0	*	*
+Chromosome5	183435423	A	2	,g	JF	2	g,	JJ	2	,,	JJ	0	*	*	0	*	*
+Chromosome5	183435456	C	2	,,	J7	2	,t	JJ	2	tt	JJ	0	*	*	0	*	*
+Chromosome5	183436412	C	1	.-2GG	J	0	*	*	1	T	J	1	.	F	0	*	*
+Chromosome5	183462004	C	0	*	*	1	.-6ATTATT	J	2	.-6ATTATT.-6ATTATT	FJ	0	*	*	1	.	F
+Chromosome5	183591766	A	0	*	*	0	*	*	1	.-4CGGC	j	1	,	o	1	.-4CGGC	s
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+Chromosome5	229489581	T	2	.C	FF	0	*	*	1	C	J	0	*	*	1	.	F
+Chromosome5	229515247	A	3	..C	sJJ	0	*	*	1	.	J	0	*	*	1	C	J
+Chromosome5	229515333	G	3	..C	sJJ	0	*	*	1	.	J	0	*	*	1	C	J
+Chromosome5	229515492	T	2	,g	JJ	0	*	*	0	*	*	1	.+7GGGAAAC	s	1	g	F
+Chromosome5	229542139	G	0	*	*	1	A	F	2	A.	7J	0	*	*	1	.	J
+Chromosome5	229605065	C	0	*	*	0	*	*	1	.	J	3	,Gg	Jss	1	G	s
+Chromosome5	229605093	T	0	*	*	0	*	*	1	.	J	2	.-3GTC,	Ss	2	.-3GTC.	SJ
+Chromosome5	229618139	G	1	.	n	0	*	*	0	*	*	1	A	J	2	A.	Js
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+Chromosome5	229854261	G	1	C	J	0	*	*	1	.	J	0	*	*	2	C.	JJ
+Chromosome5	230492584	A	0	*	*	2	T.	JJ	1	T	J	1	.	J	0	*	*
+Chromosome5	230492779	T	0	*	*	2	a,	JJ	1	a	F	1	,	F	0	*	*
+Chromosome5	230598234	G	0	*	*	2	TT	AJ	0	*	*	1	.	J	3	.T.	JJJ
+Chromosome5	230598318	G	0	*	*	2	.+2TT.+2TT	FA	0	*	*	2	..+2TT	JJ	3	..+2TT.	JJJ
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+Chromosome5	230647516	G	0	*	*	0	*	*	2	.A	os	3	A..	sss	2	..	ss
+Chromosome5	230930685	T	1	.-1G	F	0	*	*	2	.-1G.-1G	JJ	0	*	*	1	.-1G	>
+Chromosome5	231012335	T	2	,c	JF	1	,	J	1	c	J	0	*	*	0	*	*
+Chromosome5	231110554	T	1	C	J	2	..	JJ	0	*	*	0	*	*	3	C..	JJJ
+Chromosome5	231120471	T	0	*	*	2	.C	as	4	C...	sssj	2	..	so	2	.C	ss
+Chromosome5	231120475	T	0	*	*	2	..	os	4	...C	osso	2	C.	ss	2	.G	ss
+Chromosome5	231139817	G	0	*	*	1	A	F	2	A.	FF	1	,	k	0	*	*
+Chromosome5	231275957	C	0	*	*	0	*	*	1	T	J	1	.-1A	I	1	.	F
+Chromosome5	231360658	C	0	*	*	1	.-9CGGGACCGG	s	0	*	*	1	T	J	1	.	F
+Chromosome5	231387160	T	0	*	*	0	*	*	1	.	s	1	G	s	2	A.	as
+Chromosome5	231474973	C	4	,,aa	JJJJ	1	a	J	4	,,,,	JJJJ	4	,,aa	JJJJ	0	*	*
+Chromosome5	231485959	T	3	,,a	FJ<	3	,,,	FJJ	0	*	*	0	*	*	8	,,a,,,,,	JAJFJAJJ
+Chromosome5	231643899	G	2	.A	FJ	0	*	*	1	A	J	0	*	*	1	.	J
+Chromosome5	231643966	A	2	.T	JJ	0	*	*	1	T	J	0	*	*	1	.	J
+Chromosome5	231643968	G	2	.A	JJ	0	*	*	1	A	J	0	*	*	1	.	J
+Chromosome5	231643975	G	2	.A	JJ	0	*	*	1	A	J	0	*	*	1	.	J
+Chromosome5	231674353	A	0	*	*	1	G	J	1	.	J	0	*	*	2	G.	JJ
+Chromosome5	231689604	T	0	*	*	2	.G	JJ	1	.	J	0	*	*	2	GG	JJ
+Chromosome5	231702338	G	2	.A	FJ	1	.	J	0	*	*	2	A.	JJ	0	*	*
+Chromosome5	231707975	T	0	*	*	1	c	F	2	,c	FF	2	,c	JJ	2	c,	JJ
+Chromosome5	231851818	A	0	*	*	0	*	*	1	.-4GATC	8	1	.-3GAT	6	1	.-3GAT	6
+Chromosome5	231865357	A	0	*	*	0	*	*	3	..-2ACG	JIs	1	.	7	2	GG	sj
+Chromosome5	231865385	C	0	*	*	0	*	*	3	...-1G	Jss	1	.	`	2	.-1G.	jo
+Chromosome5	231865386	G	0	*	*	0	*	*	3	.-1A.*	Jsi	1	.	f	2	*A	ie
+Chromosome5	231865395	G	0	*	*	0	*	*	3	..T	Jse	1	.	j	2	TT	so
+Chromosome5	232047820	G	0	*	*	2	,C	JJ	0	*	*	2	.c	JJ	1	,	J
+Chromosome5	232047839	T	0	*	*	2	aC	JJ	0	*	*	2	Ca	<F	1	c	J
+Chromosome5	232305374	C	0	*	*	2	T,	FJ	0	*	*	3	t,,	JAA	2	,.	JJ
+Chromosome5	232374635	T	2	.C	<J	1	.	s	0	*	*	1	C	o	0	*	*
+Chromosome5	232665856	G	3	..A	JJJ	4	..A.	JJFJ	6	......	JJJJsJ	4	,A..	oJJJ	3	A..	<JJ
+Chromosome5	232669123	A	0	*	*	0	*	*	2	G.	JF	1	.	j	2	.T	JJ
+Chromosome5	232690313	T	1	A	J	0	*	*	2	.A	JJ	0	*	*	4	....	FJJJ
+Chromosome5	232690315	T	1	C	J	0	*	*	2	.C	JJ	0	*	*	4	....	JJJJ
+Chromosome5	232690472	C	1	t	J	0	*	*	2	,t	JJ	0	*	*	5	,,,,,	JJJFJ
+Chromosome5	232690507	C	1	,	J	0	*	*	2	a,	JJ	0	*	*	5	aa,aa	JJJJJ
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+Chromosome5	232848271	C	0	*	*	0	*	*	3	T..	JJJ	1	T	J	2	T.	JJ
+Chromosome5	232994732	G	4	,-1a,-1a,-1a,-1a	FJJJ	4	..,-1a,-1a	soJJ	6	,-1a,-1a,-1a,,,-1a	JJJJ7J	3	,-1a,-1a,-1a	JJJ	5	,-1a,-1a,-1a,-1a,-1a	JJJJJ
+Chromosome5	233085582	T	0	*	*	1	.	A	3	C,,	sJ7	0	*	*	2	CC	sJ
+Chromosome5	233085585	C	0	*	*	1	T	<	3	.tt	sJJ	0	*	*	2	..	sJ
+Chromosome5	233103191	A	0	*	*	0	*	*	1	,	J	2	g^],	<E	1	g	F
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+Chromosome5	233124198	G	0	*	*	1	.	J	3	.A.	Jos	0	*	*	1	C	J
+Chromosome5	233124204	A	0	*	*	1	T	_	3	CTC	Jss	0	*	*	1	C	J
+Chromosome5	233126145	T	0	*	*	1	,	J	0	*	*	2	,C	Js	1	C$	J
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+Chromosome5	233126975	T	0	*	*	0	*	*	2	..	JJ	1	C	J	2	.C	JJ
+Chromosome5	233127029	T	0	*	*	0	*	*	2	CC	JA	1	.	s	2	C.	JJ
+Chromosome5	233127056	C	0	*	*	0	*	*	2	GG	JJ	1	T	`	2	GT	JJ
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+Chromosome5	233127115	G	0	*	*	0	*	*	2	cc	JJ	1	,	J	2	,c	JJ
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+Chromosome5	233377199	C	1	.	j	0	*	*	0	*	*	1	T	j	2	.T	`o
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+Chromosome5	233395521	A	0	*	*	2	G.	Js	0	*	*	1	,	J	1	G	k
+Chromosome5	233462989	C	0	*	*	2	,-1t.	Js	2	,-1t,	JJ	2	.,-1t	sJ	1	,	J
+Chromosome5	233485837	G	0	*	*	1	A	J	1	.	J	0	*	*	2	.A	J<
+Chromosome5	233485851	G	1	T	J	1	C	=	1	.	J	0	*	*	2	TC	J@
+Chromosome5	233485886	G	1	.	J	1	C	J	0	*	*	0	*	*	2	.C	JF
+Chromosome5	233485888	G	1	.	J	1	C	J	0	*	*	0	*	*	2	.C	FJ
+Chromosome5	233493417	T	2	.C	FJ	0	*	*	1	C	A	1	,	o	0	*	*
+Chromosome5	233493452	C	2	.-1G.-1G	AF	0	*	*	1	.-1G	<	1	,	o	0	*	*
+Chromosome5	233752709	A	0	*	*	2	.C	oH	1	.	7	0	*	*	1	C	A
+Chromosome5	233809732	A	1	.-3CTG	G	0	*	*	0	*	*	1	.	J	1	.-3CTG	G
+Chromosome5	233809783	A	1	.-1T	s	0	*	*	0	*	*	1	.	J	1	.-1T	s
+Chromosome5	233883700	C	0	*	*	1	.	s	1	t	J	4	.,,t	sJFF	0	*	*
+Chromosome5	233891091	A	1	t	J	0	*	*	1	,	J	4	,,TT	JJss	0	*	*
+Chromosome5	233891115	T	1	,-2aa	J	0	*	*	1	,	J	4	,,.-3AAA.-3AAA	FJss	0	*	*
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+Chromosome5	234064362	C	0	*	*	3	..t	sJJ	2	,,	JJ	1	g	J	0	*	*
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+Chromosome5	234072666	C	0	*	*	1	.	s	2	.T	js	1	t	J	0	*	*
+Chromosome5	234072721	T	0	*	*	1	,	J	1	,-1c	E	1	,-1c	E	0	*	*
+Chromosome5	234118552	C	1	.	J	0	*	*	3	GG.	JJJ	0	*	*	1	G	J
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+Chromosome5	234623680	C	0	*	*	1	.-2TT	>	1	.-2TT	>	0	*	*	1	.-2TT	>
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+Chromosome5	234704676	A	0	*	*	0	*	*	1	.	s	1	G	s	2	.G	ss
+Chromosome5	234704736	A	0	*	*	0	*	*	1	,-1c	J	1	,-1c	J	2	,-1c,	JJ
+Chromosome5	234709510	C	0	*	*	1	,-2aa	F	2	,-2aa,-1a	JF	1	.	R	0	*	*
+Chromosome5	234711507	A	0	*	*	1	G	J	3	GG.	JJJ	2	..	JJ	0	*	*
+Chromosome5	234711572	A	0	*	*	1	G	e	3	GG.	aRo	2	..	sf	0	*	*
+Chromosome5	234711628	G	0	*	*	1	,-1a	J	3	a,,	AJF	2	,t	JJ	0	*	*
+Chromosome5	234711661	A	0	*	*	1	,-5ttcgt	J	3	,-1t,,	JJJ	2	,,	JJ	0	*	*
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+Chromosome5	234711687	C	0	*	*	1	g	<	3	agg	JJ7	2	,,	JJ	0	*	*
+Chromosome5	234758213	G	4	,,,,	JJJJ	6	,,,tt,	JJJJAA	16	,,,,,ttt,,,,,,,,	JAJJJJJJJJJAJJJF	4	,t,,	JJJJ	15	,,t,tt,,,,,,,,,	JJJJFJJJJJJJFJJ
+Chromosome5	234761079	C	3	.T.	JJA	3	.T.	oJJ	3	..T	JFJ	5	.A..T	7JsJJ	3	AA.	AJJ
+Chromosome5	234769189	T	2	..	es	4	..g,	JsJJ	0	*	*	5	.,,gG	sFJJ<	0	*	*
+Chromosome5	234769840	C	0	*	*	1	a	;	1	,	J	0	*	*	3	a,,	JJJ
+Chromosome5	234770732	C	1	.	J	0	*	*	6	..AAAA	JJJJJJ	2	A.	JJ	5	AA.AG	FJJJA
+Chromosome5	234791551	C	0	*	*	1	.-2AA	J	2	.-1A.-1A	JJ	1	.	J	0	*	*
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+Chromosome5	234792430	C	0	*	*	2	..	JA	3	.T.	JJJ	0	*	*	1	T	J
+Chromosome5	234792433	G	0	*	*	2	.A	JJ	3	..A	JJJ	0	*	*	1	.	J
+Chromosome5	234792472	G	0	*	*	2	A.	JJ	3	.A.	JJJ	0	*	*	1	A	J
+Chromosome5	234792562	T	0	*	*	2	c,	JA	3	c,,	JFJ	0	*	*	1	,	F
+Chromosome5	234792628	G	0	*	*	2	,a	JJ	3	,a,	JJJ	0	*	*	1	,	J
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+Chromosome5	234792658	C	0	*	*	2	,,	JJ	3	,,t	JJJ	0	*	*	1	t	J
+Chromosome5	234792669	G	0	*	*	2	,,	JJ	3	,,a	JJJ	0	*	*	1	a	J
+Chromosome5	234793326	G	1	A	J	1	.	J	2	.A	Js	0	*	*	0	*	*
+Chromosome5	234793367	C	1	.	J	1	T	J	2	.T	Js	0	*	*	0	*	*
+Chromosome5	234828689	C	20	........T...........	Asjsssooesss`VsjoseM	34	..................................	sssssaosjsssj`ooVsssosssoaosssos`e	89	.............................................T...........................................	osssfssojsosssssojsjo\joosssssssojssfossss`Ms\sooeoVesssssoojsooosjssRsosjsesoss\sossjVos	62	........................................*.....................	Rs`sJesossssssWossojsaVssfsossosjoosjoksmWfjssRssssaosHs\sojsj	76	..............................................A............................,	sssVsss`ossosssjssssosos`VjsssssssssssossejsssosssessssoosVsesoMsVossojsjsss
+Chromosome5	234828751	C	20	...................a	sksss\sjsss`sojjskWJ	34	.....A....................A.......	ssssoWssssosojWsVjssjsssoossssssj`	89	................................................................A........................	sjsoVsssVssssosssoosjMsojskefssossokeossssWMsVsosksMssssoosVasoosssVs\jjssfosossossososso	62	..............................................................	RsssassjossssVWsssosssossssRoosso`ssoeVssaosesRossososasWsess\	76	............................A..............................................,	sesRseskofossosossosVsssV`eooossssssssssskkssssjsssojssjss\ssss9jkssossssoss
+Chromosome5	234828756	C	20	...................,	sossssokssss\osVssjJ	34	............................T.....	oosssRssssjssooeRssjssososssossosa	89	......................................................................................A.T	ssj`esssossssssssoosaaoossssRsoosssoosesssWssRsssjsooossssssssjoossVsosossssssssjssss9ajo	62	.................TT.....................T.....................	fssssjssssssssRssVjjssossosRosssssssssosaookssasssosss\sVs`sos	76	....A......................................................................,	sssNssjMofjossessoksssjsosssosssjsssssssssessskssssssssososssos5sssssseossss
+Chromosome5	234828761	G	20	...................,	sksssjsossssosjjssIJ	34	....................T.............	osssefsossojsjssVsssesssoossssssV`	89	..T......................................................T...............................	soj`osssosssssssssssjjksssssosossessssssssf\sjsssososssoosssfssosssosVskskoesssssssssMojs	62	....................................T.........................	VsssjssssssossVssesssjossVsosjsssssssVjoossjssjsssjs`sosjo`oss	76	.......................................T....T..............................,	sssasssfjjsooossssssssssjWssssssssssossssj`sssjssssssssjssossssassssssssssss
+Chromosome5	234872924	G	1	.	s	0	*	*	1	a	F	0	*	*	2	,A	Js
+Chromosome5	234895909	G	1	.-2CA	:	1	.-2CA	;	0	*	*	1	.-2CA	:	0	*	*
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+Chromosome5	263906295	A	0	*	*	3	.C.	<JC	1	C	J	3	...	JJJ	0	*	*
+Chromosome5	263906584	G	0	*	*	2	t,	JJ	1	t	J	3	,,,	FJF	0	*	*
+Chromosome5	263906609	T	0	*	*	2	a,	JF	1	a	J	3	,,,	7F7	0	*	*
+Chromosome5	263906616	G	0	*	*	2	a,	JF	1	a	J	3	,,,	FJJ	0	*	*
+Chromosome5	263906625	G	0	*	*	2	a,	JA	1	a	J	3	,,,	JJJ	0	*	*
+Chromosome5	263906627	G	0	*	*	2	t,	J7	1	t	J	3	,,,	<JJ	0	*	*
+Chromosome5	263906635	G	0	*	*	2	a,	JF	1	a	J	3	,,,	AJJ	0	*	*
+Chromosome5	264030199	A	0	*	*	1	.-1T	J	1	.-1T	s	1	.-1T	s	0	*	*
+Chromosome5	264034526	C	1	,	J	1	t	A	0	*	*	0	*	*	3	g,,	8AJ
+Chromosome5	264091323	C	1	,	J	0	*	*	2	G.	JJ	1	T	f	0	*	*
+Chromosome5	264098708	A	1	.	F	0	*	*	1	T	J	2	T.	JF	5	TTT.T	JJJJA
+Chromosome5	264114160	C	0	*	*	1	.	o	2	.T	si	3	..*	jjE	0	*	*
+Chromosome5	264320055	C	8	........	sossssso	22	...........T....T....,	ssJssosossss`sssssssoo	58	....T...A.......T........................T................	skssssossos`ssoossssssossssssjsssssssossossssssossssssssWs	44	..,.....T...........................T......,	ssssssoosssssssjsjsssssssssssossosssssssssoo	47	.............A.................................	ssssssssksssssssaosssssssfosssssVosssesoossssos
+Chromosome5	264528644	G	3	C..	JJJ	1	.	J	2	.C	JJ	1	C	J	0	*	*
+Chromosome5	264878001	C	1	t	A	3	..,	ssJ	5	,,,tt	J<7JJ	5	t,,,,	FJJJJ	4	,tt,	FJFJ
+Chromosome5	264912693	C	0	*	*	1	T	F	0	*	*	1	.	J	2	.T	AJ
+Chromosome5	264944249	G	1	A	J	0	*	*	2	.A	7J	1	.	J	0	*	*
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+Chromosome5	264944261	C	1	.-1T	J	0	*	*	2	*.-1T	:J	1	.	J	0	*	*
+Chromosome5	264944421	C	1	g	J	0	*	*	2	g,	JJ	1	,	F	0	*	*
+Chromosome5	264952184	A	0	*	*	0	*	*	1	.-1T	J	1	.-1T	f	1	.-1T	F
+Chromosome5	264952245	C	0	*	*	0	*	*	1	.-1A	J	1	.-1A	o	1	.	J
+Chromosome5	264993026	G	1	.	o	0	*	*	0	*	*	2	,A	ss	1	A	s
+Chromosome5	265001384	G	2	A.	ss	1	.	s	0	*	*	3	..a	oWF	0	*	*
+Chromosome5	265149987	G	0	*	*	1	,	F	3	ttt	JJJ	0	*	*	2	,t	JJ
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+Chromosome5	265150003	C	0	*	*	1	,	J	3	ttt	JJJ	0	*	*	2	t,	JJ
+Chromosome5	265253144	A	1	.	J	0	*	*	0	*	*	5	...C.	JJJJJ	1	C	J
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+Chromosome5	265316830	C	1	g	J	0	*	*	1	,	J	2	g,	JJ	0	*	*
+Chromosome5	265496218	C	2	..	JJ	5	..T..	JJJJJ	4	T...	JJJJ	2	.T	JJ	5	..T..	JJJJF
+Chromosome5	265505165	A	0	*	*	1	.-1G	J	1	.-1G	J	1	.	J	0	*	*
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+Chromosome5	265548931	G	1	A	7	0	*	*	1	.$	F	0	*	*	3	..A	7F7
+Chromosome5	265549267	C	2	t,	7<	0	*	*	1	,	A	0	*	*	3	,,t	JA<
+Chromosome5	265621239	C	1	a	F	0	*	*	2	,,	JJ	0	*	*	4	,g,,	FJFJ
+Chromosome5	265734393	C	0	*	*	1	T	F	4	.TTT	sJJJ	0	*	*	2	T.	Js
+Chromosome5	265734412	G	0	*	*	1	A	J	4	.AA.	oJJJ	0	*	*	2	..	Jo
+Chromosome5	265734434	C	0	*	*	1	A	F	4	.AAA	sJJJ	0	*	*	2	A.	Js
+Chromosome5	265775613	A	19	.C...CC.....C...CCC	JFFJJJJJJAJJFJJJJJJ	10	..CC......	JJJJJFFJJJ	9	C.C.....C	JJJJAFJJJ	6	C.....	FJJJJA	20	.............C....C.	JJJFJJAJFJJJFJAJ<J<7
+Chromosome5	265832418	C	1	T	J	0	*	*	1	.	J	0	*	*	2	.T	JF
+Chromosome5	265873250	A	2	CC	FJ	1	G	J	3	GGC	JsJ	2	TT	ss	0	*	*
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+Chromosome5	266010360	A	0	*	*	0	*	*	2	,-1g,	JJ	1	,	J	1	,-1g	J
+Chromosome5	266017206	C	0	*	*	2	,.	ss	3	T..	JJJ	2	T.	sJ	0	*	*
+Chromosome5	266017213	T	0	*	*	2	,C	os	3	...	AJJ	2	C.	sJ	0	*	*
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+Chromosome5	266070770	A	0	*	*	1	,	J	1	.-1T	s	0	*	*	1	.-2TT	J
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+Chromosome5	266176497	G	1	T	J	3	.a.	JJJ	3	..T	JJs	0	*	*	1	.	A
+Chromosome5	266176624	C	2	t,	JJ	4	,,..	JJ`s	3	.a,	sJF	2	.t	sJ	4	t,.g	JJsJ
+Chromosome5	266186708	A	0	*	*	0	*	*	1	.-1G	F	1	,-1g	s	1	.	J
+Chromosome5	266195943	T	1	.	F	1	C	F	0	*	*	0	*	*	2	C.	JF
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+Chromosome5	266211237	C	2	,,	75	0	*	*	1	T	F	2	.t	sJ	0	*	*
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+Chromosome5	266386913	A	1	.-2GT	J	0	*	*	0	*	*	1	.-2GT	J	2	.-2GT.	JJ
+Chromosome5	266386936	T	1	.-5GTACG	[	0	*	*	0	*	*	1	.-5GTACG	<	2	.-5GTACG.-5GTACG	[[
+Chromosome5	266586755	C	0	*	*	2	.+9GGAGGGGGT,	`W	1	,+9ggagagggt	J	1	t	J	0	*	*
+Chromosome5	266633331	T	0	*	*	1	a	J	1	,	J	0	*	*	2	,a	FJ
+Chromosome5	266645827	C	2	A.	JJ	0	*	*	0	*	*	1	.	J	2	.A	JJ
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+Chromosome5	266984365	A	1	.-3TGT	J	0	*	*	1	.-3TGT	J	0	*	*	1	.-3TGT	F
+Chromosome5	266991513	T	1	C	J	0	*	*	1	A	A	0	*	*	2	C.	JJ
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+Chromosome5	267060962	T	0	*	*	0	*	*	1	C	J	2	C.	sn	1	.	n
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+Chromosome5	267287970	C	1	.-2TG	J	0	*	*	2	..-2TG	JJ	2	..	Zs	0	*	*
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+Chromosome5	267318060	A	1	,	J	0	*	*	1	g	J	0	*	*	3	,,g	JJJ
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+Chromosome5	267522175	T	0	*	*	1	,-2tc	:	1	.	F	1	.-2TC	:	0	*	*
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+Chromosome5	267522315	T	2	,,	JJ	4	ccc.	JFJj	5	,,,c,	JJJF<	2	c,	JF	3	cc,	JJJ
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+Chromosome5	267624486	C	1	a	J	3	..T	JoV	0	*	*	0	*	*	3	...	Jos
+Chromosome5	267624491	G	1	,	J	3	A..	Jso	0	*	*	0	*	*	3	A..	Jjs
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+Chromosome5	267659349	G	3	,,,	7JA	2	,a	JJ	2	,a	JJ	4	,,a,	J7J<	3	,aa	JJ7
+Chromosome5	267856618	A	0	*	*	2	.G	J>	0	*	*	1	.	J	2	.G	JJ
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+Chromosome5	267914352	T	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,-2aa	J
+Chromosome5	267971212	C	0	*	*	3	..t	oos	1	.	W	0	*	*	1	T	o
+Chromosome5	267971265	C	0	*	*	3	AA,	ses	1	A	9	0	*	*	1	.	o
+Chromosome5	267974229	G	0	*	*	1	.-2CT	s	1	,-2ct	J	1	,-2ct	J	2	,-2ct,-2ct	JJ
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+Chromosome5	268075763	T	1	,	F	0	*	*	0	*	*	2	,,-2tc	J5	3	,,,-2tc	J75
+Chromosome5	268075764	T	1	,	F	0	*	*	0	*	*	2	,*	JJ	3	,,*	JFJ
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+Chromosome5	268361028	G	3	aaT	7Fo	1	.	s	0	*	*	0	*	*	1	t	<
+Chromosome5	268411339	G	0	*	*	0	*	*	1	.-1A	A	1	.	J	1	.-1A	J
+Chromosome5	268411785	A	0	*	*	0	*	*	1	,-1c	A	1	,	7	1	,-1c	J
+Chromosome5	268488716	A	0	*	*	1	C	<	1	.	<	2	.+1C.+1C	FH	0	*	*
+Chromosome5	268489143	C	0	*	*	1	,	J	2	,-3att,	JA	2	,-3att,-3att	JJ	0	*	*
+Chromosome5	268557126	G	2	t,	FF	1	t	F	0	*	*	1	.	s	0	*	*
+Chromosome5	268557180	C	2	a,	<J	1	a	J	0	*	*	1	,	J	0	*	*
+Chromosome5	268687114	A	1	,	F	0	*	*	1	t	J	0	*	*	2	ct	JJ
+Chromosome5	269012162	G	1	.-1T	J	3	.+1T.T	FJs	0	*	*	0	*	*	1	.-1T	J
+Chromosome5	269012355	C	2	a,	JJ	2	,a	JJ	0	*	*	0	*	*	1	a	J
+Chromosome5	269015612	G	19	,,,,,,c,,,ccc,,,c,,	J7AFFFJJFJJJJJFJ<J7	6	C,.,,c	kAsJFJ	19	...c,,,,c,c,,,c,c,c	sssJAFJJJJJJ7JF<JF7	18	C,,C.,,,,,,,,,c,c,	oJJssF<JJJFFJJJJ7a	19	,,,,,,,,,ccccccc,,,	J7JFJJFFFJFJJJJJJAJ
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+Chromosome6	39423174	T	79	CCc.ccc,,c,ccc,cccc,,ccc,,,c,ccc,,,ccc,,cc,cc,ccccc,,ccc,,cc,cc,ccccccccccccccc	esJsJJJJJ7JFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJ<JFJJJJJJJJJJJJJJJJJJJJJFJJJJJss	141	C$,cccc,cc,,,,,c,cccccc,,c,c,,,ccc,ccc,ccccc,,cc,,c,,cccccccc,ccc,,c,cc,c,,ccc,ccc,c,,,,,ccc,ccc,,c,c,cccc,cc,ccccc,ccc,cccc,ccc,,ccc,CcCCcCC.	JFAJJFJJJJJJJJJJFJJJJJJFFJFJJJJJJJJJJJJAJJJJJJF7JJJJJJJJJJJJJAJFJ<JFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJoJo`Jsso	169	.cc.,ccc,,c,cc,,,cc,ccc,ccccccccccccc,c,cccccccccccc,,cc,,ccc,c,c,ccccccc,,,,cccccccccc,cc,cccccccc,ccc,,,cc,ccccc,,cc,,ccc,cccc,,,c,c,,,ccc,,c,,c,ccccccccccccc,,cc.,C.C	sJJsJJJFJJJJJJJJAJJJJJFJJJJJJJJJFJFJJJJ<JJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJFJJJJJJJJJJJAJJJJJJJJJJJJJJAJJFJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJo7oFsss	174	C$.C,,CccCc,C,c,ccc,Cc,cc,c,c,ccc,c,,cccc,,ccc,cc,c,,,cccccc,,cccc,,cccccc,c,,,cc,,ccccc,ccccc,,ccc,,,cc,cccc,,cc,,ccccc,c,,,ccc,ccccc,c,cc,c,ccccc,ccc,,,cc,c,cccc,,C,,.CCCccC	JofF<sJJ\JJsJFJJFJFsJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF7JJJJJFFJJJJJJJFJJJJJJJJJJJJJJJJJJAJJJ<JJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJossssssJos	150	cc,,cccc,cccccccc,c,ccccccc,c,c,,cc,c,ccc,,cccc,cc,cccc,cccccccccc,c,c,cccccc,c,cccccccccccc,ccc,c,cc,cc,c,ccccc,,ccccc,ccc,ccccccc,,,cc,cccccccc,CCcc	JJJJJFJJFJJFJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJ<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJAJJJJJJFJJFJJJJ<JJJJJJJJJJJJJAJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJsRFA
+Chromosome6	39423443	G	2	.-2AA.-2AA	dW	0	*	*	0	*	*	1	.-2AA	[	2	.-2AA.-2AA	[W
+Chromosome6	39453233	A	0	*	*	1	g	J	2	,g	JJ	1	,	F	0	*	*
+Chromosome6	39453252	T	0	*	*	1	c	J	2	,c	AJ	1	,	A	0	*	*
+Chromosome6	39693205	T	2	.C	JJ	0	*	*	1	.	F	1	C	F	0	*	*
+Chromosome6	39730740	A	1	.-9CGCCAGCAC	8	0	*	*	1	.-9CGCCAGCAC	8	0	*	*	1	.-9CGCCAGCAC	D
+Chromosome6	39803156	G	1	,-8caacattt	J	0	*	*	0	*	*	1	,-8caacattt	J	1	.-8CAACATTT	s
+Chromosome6	39824216	A	3	,$,$c	>>J	0	*	*	4	C...	JAAA	1	C	s	0	*	*
+Chromosome6	39824258	C	1	,	J	0	*	*	3	.-3GGT..	9JJ	1	.-3GGT	o	0	*	*
+Chromosome6	39824524	C	0	*	*	1	.	\	0	*	*	1	T	J	4	TTT.	JA7J
+Chromosome6	39912612	A	1	.-1G	7	1	.-1G	J	0	*	*	0	*	*	1	.-1G	F
+Chromosome6	39913717	C	2	T,	JJ	1	t	s	0	*	*	1	.	J	0	*	*
+Chromosome6	39913737	G	2	C,	FA	1	t	s	0	*	*	1	.	A	0	*	*
+Chromosome6	39913754	C	2	T,	JJ	1	t	s	0	*	*	1	.	o	0	*	*
+Chromosome6	39913781	C	2	T,	JJ	1	*	s	0	*	*	1	.	s	0	*	*
+Chromosome6	39975066	A	0	*	*	0	*	*	2	.-1C.-1C	JJ	1	.-1C	F	1	.-1C	J
+Chromosome6	40061545	T	1	,-1g	F	0	*	*	0	*	*	1	,	J	1	,-1g	J
+Chromosome6	40070999	T	0	*	*	2	,A	Fs	2	,G	Js	2	.g	s7	0	*	*
+Chromosome6	40071005	G	0	*	*	2	,C	Js	2	,A	Js	1	.	s	0	*	*
+Chromosome6	40071009	T	0	*	*	2	,C	Js	2	,C	Js	1	.	s	0	*	*
+Chromosome6	40071022	C	0	*	*	2	a.	Js	2	a.	Js	2	.,	s7	0	*	*
+Chromosome6	40071027	T	0	*	*	2	,C	Js	2	,C	Jo	2	.c	sJ	0	*	*
+Chromosome6	40071037	C	0	*	*	2	,T	Js	2	,T	Js	1	.	s	0	*	*
+Chromosome6	40071228	G	1	A	s	0	*	*	2	A.	as	0	*	*	1	.	s
+Chromosome6	40075319	T	0	*	*	1	.-1G	J	1	.-1G	J	0	*	*	1	.	J
+Chromosome6	40129093	A	0	*	*	1	,	k	2	,-1t,-1t	MM	0	*	*	1	.-1T	M
+Chromosome6	40194679	T	4	,ccc	JJJJ	1	c	J	2	c,	JJ	0	*	*	5	.,,,c	sFFJJ
+Chromosome6	40385506	C	1	T	A	2	A.	JJ	0	*	*	0	*	*	1	.	J
+Chromosome6	40385510	T	1	.	J	2	..-1G	JJ	0	*	*	0	*	*	1	.-1G	J
+Chromosome6	40385511	G	1	.	F	2	.*	JJ	0	*	*	0	*	*	1	*	J
+Chromosome6	40385551	C	1	T	J	2	T.	JJ	0	*	*	0	*	*	1	.	J
+Chromosome6	40385564	G	1	.	A	2	.A	JJ	0	*	*	0	*	*	1	A	J
+Chromosome6	40385575	C	1	.	F	2	.G	JA	0	*	*	0	*	*	1	G	J
+Chromosome6	40385641	C	1	A	@	2	.t	sJ	0	*	*	0	*	*	1	t	J
+Chromosome6	40385709	G	1	,	F	2	a,	JJ	0	*	*	0	*	*	1	a	A
+Chromosome6	40675865	G	2	A.	JF	1	.	s	0	*	*	1	A	?	0	*	*
+Chromosome6	40675901	C	2	T.	FJ	1	.	s	0	*	*	1	T	J	0	*	*
+Chromosome6	40691042	A	4	.GG.	FFFF	10	.G.....G..	FFFFFFFFFF	11	G...G.....G	FFFFFFFFAFA	16	........G.......	JFFFAFFFFFF9FFFA	14	..............	FFFFFFFFFFFFFF
+Chromosome6	40691063	C	4	....	JJJJ	11	.........T.	JJJJJJJJJJJ	11	.TT.....T..	JJJJJJJJFJF	16	......T........T	JJJJFJJJJJJJJJJA	14	......T..TT.T.	JJJJJJJJJJJJ7J
+Chromosome6	40691273	T	4	,,,,	JJJJ	10	,,c,,,,,,,	JJJJJFJJJJ	10	c,,,,,,,,,	JJJJJJJJJJ	16	,c,,,,,c,,,,,,,,	JFJJJJJJJJJJJJJJ	14	c,,,,,,,,,,,,,	JJJJJJJJFJJJJJ
+Chromosome6	40691280	A	4	g,g,	JJJJ	10	,$,,gg,ggg,	AJFJJJJJJJ	10	,,,,gg,,,g	JJJJJJJJJJ	16	,,g,,,g,,g,,,,,,	JAJJJJJJJJJJJJJJ	13	,,,,,,,,,,g,g	JJJJFJJFFJJJF
+Chromosome6	40898415	C	5	..+1T..+1T.+1T	ososs	6	....+1T..	sas\oe	8	..+1T.+1T.+1T..+1T..	eJjsssos	10	......+1T....-1T	soHossssjs	6	.....+1T.	skssss
+Chromosome6	40898428	A	5	...+1T..	o\kso	7	...+1T.+1T..+1T,+1t	sCs7oeF	10	.+2TT.+1T.+1T.+1T...+1T.,+1t,+1t	ssJJVorsJJ	11	...+1T.+1T..+1T.+1T..+1T.,+1t	sjsosJos`jJ	7	.+1T.+1T...+1T.,+1t	ssjfJsJ
+Chromosome6	40898639	T	3	..-4GATC.	oJs	5	.-4GATC...-4GATC.	IssIj	7	...-4GATC.-4GATC..-4GATC.	ssIIsIs	14	.........-4GATC.-4GATC.-4GATC..-4GATC.-4GATC	esssjfssIIIJII	5	....-4GATC.	sosIs
+Chromosome6	40898640	G	3	.*.	s@s	5	*..*.	IssIo	7	..**.*.	ssIIoIs	14	........***.**	ksssVassIIIAII	5	...*.	sf`Is
+Chromosome6	40898641	A	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	ssIIkIs	14	........***.**	ssssasssIIIJII	5	...*.	sooIs
+Chromosome6	40898642	T	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	ssII\Is	14	........***.**	ssssWossIIIJII	5	...*.	ssoIs
+Chromosome6	40898643	C	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	osIIWIs	14	........***.**	osssHsssIIIJII	5	.A.*.	sssIs
+Chromosome6	40899317	G	7	.....A.	JJJJJJJ	8	.AA.A...	JJJJJJJJ	9	..A.A..AA	JJJJJJJJJ	3	.A.	JJJ	12	A..A.AA....A	JJJJJJJJJJJJ
+Chromosome6	40899410	C	7	.......	JFJAJJJ	8	.AA.A...	sJJJ`JJJ	9	........A	JJJJJJJJJ	4	...A	JJJV	13	T....AA....A.	FJJJJJJJFJJJo
+Chromosome6	40899433	A	7	.+1T.+1T.-1T...+1T.	7FJ7JFA	7	....+1T.-1T..-1T	s7JsJJo	9	.-1T..+1T.+1T..+2TT.-1T..+1T	FJ<JJJJFJ	7	..+1T..+1T.-1T.+1T.	FJJ`JJJ	13	...+1T.+1T..+1T.+1T.+1T....+1T.-2TT	JJJJ7J7FJJJJs
+Chromosome6	40899671	C	12	..T.........	7JJJJJJFJJJJ	5	TT...	JJJJJ	13	....T........	JJJJAJJJJJJJJ	2	..	JJ	15	.......TT...t..	FJJJJJJA7JJJjss
+Chromosome6	40927939	T	1	.	V	0	*	*	0	*	*	2	,-1c,-1c	66	3	,-1c,-1c,	66s
+Chromosome6	40927940	C	1	.	o	0	*	*	0	*	*	2	**	55	3	**,	55s
+Chromosome6	40927942	T	1	.	V	0	*	*	0	*	*	2	gg	55	3	gg,	55s
+Chromosome6	40927946	C	1	.	o	0	*	*	0	*	*	1	g	J	3	gg,	AJs
+Chromosome6	40942132	A	1	T	J	4	...T	JJJJ	0	*	*	1	.	J	0	*	*
+Chromosome6	40942158	G	1	T	J	4	..T.	JJJJ	0	*	*	1	.	A	0	*	*
+Chromosome6	40942220	G	1	,	J	4	,t,,	JJJJ	0	*	*	1	a	J	0	*	*
+Chromosome6	40942234	C	1	a	J	4	t,,,	JJJJ	0	*	*	1	,	F	0	*	*
+Chromosome6	40942258	T	1	c	J	4	,,,c	JAFJ	0	*	*	1	,	J	0	*	*
+Chromosome6	41015155	G	0	*	*	0	*	*	2	.-1A.-1A	JJ	1	.-1A	J	1	.	J
+Chromosome6	41064600	G	1	.	J	0	*	*	3	C..	AJJ	0	*	*	1	C	J
+Chromosome6	41064606	G	1	.	J	0	*	*	3	C..	7JJ	0	*	*	1	C	J
+Chromosome6	41064723	A	1	,	J	0	*	*	3	t,,	JFJ	0	*	*	1	t	J
+Chromosome6	41064810	A	1	,	J	0	*	*	3	t,,	JJJ	0	*	*	1	t	J
+Chromosome6	41064813	A	1	,	J	0	*	*	3	c,,	JJJ	0	*	*	1	c	J
+Chromosome6	41064828	G	1	,	J	0	*	*	3	a,,	JJJ	0	*	*	1	a	J
+Chromosome6	41083554	G	0	*	*	0	*	*	1	,	J	2	T.	ss	1	t	A
+Chromosome6	41174158	T	2	.c	<F	1	c	<	1	.	J	0	*	*	0	*	*
+Chromosome6	41426795	C	0	*	*	1	t	J	1	,	F	0	*	*	3	,t,	JJA
+Chromosome6	41430207	T	4	.C..	osos	3	..C	oeo	2	CC	s`	3	..C	sss	1	.	V
+Chromosome6	41487899	C	1	,-7ttgccag	;	0	*	*	1	,-7ttgccag	;	0	*	*	1	,	F
+Chromosome6	41570494	T	1	.-1C	J	0	*	*	1	.-1C	J	0	*	*	1	.-1C	J
+Chromosome6	41648271	C	1	,	J	1	G	f	0	*	*	2	.G	sJ	0	*	*
+Chromosome6	41804056	A	0	*	*	0	*	*	6	..G..G	jsseos	1	G	`	3	G..	sFs
+Chromosome6	41822339	G	0	*	*	2	..	JJ	2	AT	JJ	0	*	*	2	.A	JJ
+Chromosome6	41903789	A	0	*	*	1	.-5AGCCC	I	0	*	*	1	.-5AGCCC	I	1	.-5AGCCC	I
+Chromosome6	42152323	T	1	.	J	1	.-5ATCCA	>	1	.-5ATCCA	<	0	*	*	0	*	*
+Chromosome6	42272725	T	0	*	*	1	.-8ACTTGTGC	J	1	.-8ACTTGTGC	J	0	*	*	1	.-8ACTTGTGC	J
+Chromosome6	42303413	G	0	*	*	2	.A	Js	0	*	*	2	..	JF	2	AA	JJ
+Chromosome6	42377525	C	1	.	J	2	.G	JJ	1	G	J	0	*	*	0	*	*
+Chromosome6	42377540	C	1	.	J	2	.A	AJ	1	A	J	0	*	*	0	*	*
+Chromosome6	42377559	G	1	.	J	2	.A	<J	1	A	J	0	*	*	0	*	*
+Chromosome6	42377602	C	1	.	s	2	.T	FA	1	T	J	0	*	*	0	*	*
+Chromosome6	42377608	A	1	.	s	2	.G	FJ	1	G	J	0	*	*	0	*	*
+Chromosome6	42377615	G	1	.	s	2	.A	7F	1	A	A	0	*	*	0	*	*
+Chromosome6	42500923	G	3	t,,	JJJ	2	,,	JF	0	*	*	2	,t	JJ	1	t	J
+Chromosome6	42502140	T	1	C	J	0	*	*	0	*	*	3	..C	AFJ	1	.	A
+Chromosome6	42503648	T	0	*	*	2	,,	FF	1	c	:	4	cc,.	::Fk	0	*	*
+Chromosome6	42512393	T	0	*	*	1	.	J	0	*	*	1	C	J	2	.C	JJ
+Chromosome6	42512446	C	0	*	*	1	T	o	0	*	*	1	.	s	2	.T	so
+Chromosome6	42512476	G	0	*	*	1	C	s	0	*	*	1	.	s	2	AC	ss
+Chromosome6	42644888	T	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,	<
+Chromosome6	42721489	G	0	*	*	4	.-8TTTAGGGT...	WJJJ	4	.-1TT.-1T.	FFJs	1	.-1T	J	6	.-1T..-1T.-1T..	sJJJJJ
+Chromosome6	42721539	T	0	*	*	4	....	eF7o	4	C...	oeoj	1	C	s	5	.G..C	oFsso
+Chromosome6	42722746	G	1	.	F	2	.A	FF	0	*	*	0	*	*	3	..A	AA>
+Chromosome6	42722768	G	1	.	J	2	..-2CA	JJ	0	*	*	0	*	*	3	...-2CA	J<J
+Chromosome6	42722777	C	1	.	J	1	T	J	0	*	*	0	*	*	2	T.	JJ
+Chromosome6	42722911	C	1	,	F	2	,t	JA	0	*	*	0	*	*	2	,t	FJ
+Chromosome6	42722972	A	1	,	J	1	t	F	0	*	*	0	*	*	3	,,t	<JJ
+Chromosome6	42722973	T	1	,	J	1	a	J	0	*	*	0	*	*	3	,,a	AJJ
+Chromosome6	42722984	A	1	,	J	1	g	A	0	*	*	0	*	*	3	,,g	FJJ
+Chromosome6	42723285	T	0	*	*	2	.-7TAGGGTC.	8J	0	*	*	2	.-7TAGGGTC.	6>	2	.-7TAGGGTC.	5J
+Chromosome6	42723306	T	0	*	*	2	..	8J	0	*	*	4	...C	sJ=F	3	..C	<sJ
+Chromosome6	42723310	G	0	*	*	2	..	85	0	*	*	3	..t	=IA	3	T..	<oJ
+Chromosome6	42723317	G	0	*	*	2	T,	aA	0	*	*	4	...,	soIA	3	CT.	sos
+Chromosome6	42723327	C	0	*	*	2	..	sd	0	*	*	5	..*.t	oRFPJ	3	..T	jss
+Chromosome6	42725005	T	0	*	*	1	.	J	2	.C	JJ	2	.C	Fj	0	*	*
+Chromosome6	42725088	G	0	*	*	1	A	k	2	..	`e	2	A.	jR	0	*	*
+Chromosome6	42725195	T	0	*	*	1	,	J	2	,-7tagggac,	>J	1	,-7tagggac	>	0	*	*
+Chromosome6	43008488	T	1	,	F	1	G	F	2	C.	JA	0	*	*	0	*	*
+Chromosome6	43081699	T	1	.-1C	J	0	*	*	1	.-1C	J	0	*	*	1	.-1C	J
+Chromosome6	43100878	T	1	c	J	3	.CC	sFJ	0	*	*	1	.	s	0	*	*
+Chromosome6	43173919	C	2	,,	FJ	0	*	*	4	t,,t	JJ7<	0	*	*	3	,t,	JJA
+Chromosome6	43173933	G	2	,+1t,+1t	JJ	0	*	*	4	,,+1t,+2tt,+3ttt	JJAA	0	*	*	2	,,+2tt	JF
+Chromosome6	43270968	C	1	G	o	0	*	*	0	*	*	2	,g	AF	1	,	A
+Chromosome6	43270974	T	1	.	s	0	*	*	0	*	*	2	c,	JJ	1	c	J
+Chromosome6	43371245	T	1	.-3TAG	;	0	*	*	2	..-3TAG	J;	1	.-3TAG	;	0	*	*
+Chromosome6	43371344	A	1	G	J	0	*	*	2	.G	JJ	2	.G	JJ	0	*	*
+Chromosome6	43371350	C	1	.	J	0	*	*	2	T.	JJ	2	T.	JF	0	*	*
+Chromosome6	43371448	C	1	,	J	0	*	*	2	,g	JJ	2	G,	jJ	0	*	*
+Chromosome6	43371449	A	1	,	J	0	*	*	2	,g	JJ	2	G,	sJ	0	*	*
+Chromosome6	43371451	T	1	,	J	0	*	*	2	,a	JJ	2	A,	oJ	0	*	*
+Chromosome6	43371486	C	1	,	J	0	*	*	2	,g	JJ	2	,g	JA	0	*	*
+Chromosome6	43371503	G	1	,	J	0	*	*	1	,-1c	J	1	,-1c	J	0	*	*
+Chromosome6	43424047	C	0	*	*	1	t	F	0	*	*	1	,	F	2	,t	JJ
+Chromosome6	43889789	A	1	,-5tactg	:	0	*	*	1	,-5tactg	:	0	*	*	1	,-5tactg	:
+Chromosome6	43910092	C	0	*	*	3	,+1ta,+1t	JJJ	0	*	*	1	a	A	2	,+1t,	JA
+Chromosome6	43915617	G	2	,+1t,+2tt	FJ	2	,+3ttt,+2tt	JJ	1	,+7ttttttt	J	2	,+1t,+1t	JF	0	*	*
+Chromosome6	43918315	T	0	*	*	0	*	*	2	..-2CC	JJ	1	.	s	1	.-2CC	J
+Chromosome6	43919272	T	0	*	*	0	*	*	1	.	s	2	G.	ss	1	G	o
+Chromosome6	43920123	A	0	*	*	1	.-2AG	H	2	.-4AGAG.-4AGAG	;;	2	.-2AG.-2AG	>>	0	*	*
+Chromosome6	43921429	T	0	*	*	1	.	J	0	*	*	2	a.	sJ	1	A	J
+Chromosome6	43921432	C	0	*	*	1	.	J	0	*	*	2	t.	oJ	1	A	J
+Chromosome6	43921467	C	0	*	*	1	.	J	0	*	*	2	t.	sJ	1	T	J
+Chromosome6	43969690	C	0	*	*	0	*	*	3	...	JJ7	1	T	J	5	...T.	<JJJJ
+Chromosome6	43969751	G	0	*	*	0	*	*	3	.A.	JJF	1	.	J	5	T....	JJJJJ
+Chromosome6	43969776	C	0	*	*	0	*	*	3	...	JJA	1	T	J	4	.AT.	FJJJ
+Chromosome6	43969929	T	0	*	*	0	*	*	3	,,,	JJF	1	c	F	5	,,,c,	7JJJJ
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+Chromosome6	56593860	T	2	G,	sJ	1	g	J	1	,	J	0	*	*	0	*	*
+Chromosome6	56595471	G	1	,	<	0	*	*	1	a	F	0	*	*	5	,a,,,	FF<JF
+Chromosome6	56595483	A	1	g	A	0	*	*	1	,	J	0	*	*	5	,,ggg	AJFJJ
+Chromosome6	56595531	C	1	,	J	0	*	*	1	t	J	0	*	*	4	t,,,	JJFA
+Chromosome6	56604307	G	1	a	J	0	*	*	1	.	s	3	a,,	<JJ	2	,a	JJ
+Chromosome6	56604353	C	1	t	J	0	*	*	1	,	J	3	t,,	JJJ	2	,t	FJ
+Chromosome6	56604437	A	1	g	J	0	*	*	1	,	J	3	g,,	JJJ	2	,g	JJ
+Chromosome6	56773294	T	0	*	*	1	.	J	0	*	*	1	C	J	2	.C	FJ
+Chromosome6	56773366	C	0	*	*	1	.	A	0	*	*	2	TT	JJ	2	.T	AJ
+Chromosome6	56839954	C	0	*	*	1	.$	E	2	.-2AG.-2AG	JJ	3	.$.$,-2ag	EEJ	0	*	*
+Chromosome6	56839989	G	0	*	*	1	,-6cgtcct	A	2	.-6CGTCCT.-6CGTCCT	Ca	2	,-6cgtcct,-6cgtcct	AA	0	*	*
+Chromosome6	56841168	A	1	.-2TT	J	1	.-2TT	J	1	.-3TTT	s	0	*	*	0	*	*
+Chromosome6	56933810	C	1	.-1T	o	1	.	s	0	*	*	0	*	*	1	*	d
+Chromosome6	57101085	T	0	*	*	2	a,	JF	3	c,,	JJJ	0	*	*	1	,	J
+Chromosome6	57101094	C	0	*	*	2	t,	FJ	3	,,t	JJF	0	*	*	1	,	J
+Chromosome6	57204791	C	0	*	*	2	.-1A.-1A	ke	1	.-1A	o	1	.-1A	j	1	.-1A	J
+Chromosome6	57212996	G	2	,a	7J	1	a	F	0	*	*	0	*	*	1	,	J
+Chromosome6	57219709	T	0	*	*	1	a	J	0	*	*	2	,a	JJ	1	,	J
+Chromosome6	57219715	C	0	*	*	1	g	J	0	*	*	2	,g	JJ	1	,	J
+Chromosome6	57367009	C	1	T	J	1	.	F	2	T.	FJ	0	*	*	0	*	*
+Chromosome6	57367116	A	1	g	J	1	,	<	2	g,	<F	0	*	*	0	*	*
+Chromosome6	57513153	G	2	,,	JJ	4	,-2cc*,-2cc,-2cc	JAJJ	7	,-2cc,-2cc,,,,+2cc,	JJJ7JJA	4	,-2cc,,+1c,+1c	JFJJ	7	,-2cc,,,,,+1c,+2cc	JJFJ7JF
+Chromosome6	57513218	T	2	,,	JJ	4	c,,,	JJJJ	8	,c,,,,,,	JAJJ<JJJ	6	,,cc,,	JJJJFJ	8	,ccc,,,,	JJJJAJJJ
+Chromosome6	57670729	G	2	AA	JJ	4	,A..	ssAJ	0	*	*	0	*	*	4	.A.A	JJ7J
+Chromosome6	57724967	C	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,-1a	J
+Chromosome6	57750808	C	0	*	*	2	T.	Rs	1	T	s	0	*	*	1	.	J
+Chromosome6	57750931	C	0	*	*	2	,t	JJ	1	t	J	0	*	*	1	,	J
+Chromosome6	57758947	G	0	*	*	0	*	*	2	A.	JA	2	A.	JJ	3	...	JJJ
+Chromosome6	57758973	C	0	*	*	0	*	*	2	T.	JA	2	..	J7	3	.G.	JJJ
+Chromosome6	57759018	C	0	*	*	0	*	*	2	.T	J<	2	..	JJ	3	.T.	JJJ
+Chromosome6	57759034	A	0	*	*	0	*	*	2	..	JJ	2	.G	FJ	3	G..	JJA
+Chromosome6	57759261	C	0	*	*	0	*	*	1	,	J	1	t	J	3	t,,	JJJ
+Chromosome6	57759921	A	2	..	jJ	0	*	*	2	.G	JJ	0	*	*	1	G	J
+Chromosome6	57759930	A	2	..-1T	oJ	0	*	*	3	.-1T.-1T.	JJJ	0	*	*	1	.	J
+Chromosome6	57759972	C	2	.T	sJ	0	*	*	3	TT.	JFF	0	*	*	1	.	J
+Chromosome6	57759988	G	2	..	sF	0	*	*	3	..A	A7J	0	*	*	1	A	J
+Chromosome6	57760002	G	2	A,	JJ	0	*	*	3	AA.	JFF	0	*	*	1	.	J
+Chromosome6	57760375	C	0	*	*	1	,	J	3	,t,	JJJ	2	,T	JJ	1	t	F
+Chromosome6	57992265	C	0	*	*	1	.-1A	s	1	.	J	0	*	*	1	.-1A	J
+Chromosome6	57992293	G	0	*	*	1	.-7TAGGAAC	s	1	.	F	0	*	*	1	.-7TAGGAAC	J
+Chromosome6	58217350	C	0	*	*	0	*	*	2	..	JJ	1	T	J	2	.T	JJ
+Chromosome6	58217355	C	0	*	*	0	*	*	2	..	JJ	1	A	F	2	T.	JJ
+Chromosome6	58262764	A	0	*	*	1	,	7	2	CC	`A	0	*	*	2	C.	oJ
+Chromosome6	58262786	C	0	*	*	1	,	J	2	T.	VF	0	*	*	2	t.	AJ
+Chromosome6	58262804	C	0	*	*	1	,	J	1	t	7	0	*	*	2	t.	7J
+Chromosome6	58289924	T	1	,	J	0	*	*	1	c	J	2	,c	JJ	0	*	*
+Chromosome6	58337457	G	2	.A	JJ	2	..	J<	0	*	*	1	A	J	0	*	*
+Chromosome6	58337917	C	2	t,	7<	0	*	*	3	.,,	FJF	4	..,t	oJAA	0	*	*
+Chromosome6	58337926	T	2	cc	7F	0	*	*	3	C,,	JJA	4	..,c	sAJF	0	*	*
+Chromosome6	58337947	T	2	a,	JJ	0	*	*	2	,,	FF	4	..,a	ssJJ	0	*	*
+Chromosome6	58638250	A	1	g	J	1	,	J	0	*	*	2	g.	JJ	0	*	*
+Chromosome6	58675157	T	0	*	*	2	G.	oF	1	G	J	0	*	*	1	.	F
+Chromosome6	58973027	A	1	C	F	0	*	*	2	..	JJ	2	.C	JJ	2	.C	<A
+Chromosome6	58973141	T	1	C	j	0	*	*	2	..	oj	2	.C	js	2	.C	so
+Chromosome6	58973185	G	1	a	<	0	*	*	2	,,	J7	2	,a	JJ	2	,a	FJ
+Chromosome6	59072704	G	1	.	J	1	.-2AA	J	0	*	*	0	*	*	1	.-1A	J
+Chromosome6	59254821	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	4	...C	FJJJ
+Chromosome6	59254977	T	2	ga	AJ	0	*	*	0	*	*	1	g	J	3	,g,	JJJ
+Chromosome6	59351195	C	2	TT	7J	1	.-1T	J	0	*	*	0	*	*	1	.	J
+Chromosome6	59388023	C	1	.	J	0	*	*	0	*	*	2	G,	JJ	1	G	J
+Chromosome6	59388051	C	1	T	J	0	*	*	0	*	*	2	.t	JJ	1	.	J
+Chromosome6	59388074	T	1	C	F	0	*	*	0	*	*	2	.c	JJ	1	.	J
+Chromosome6	59445298	C	0	*	*	0	*	*	1	G	J	1	.	<	2	A.	JJ
+Chromosome6	59445305	C	0	*	*	0	*	*	1	G	J	1	.	J	2	A.	JJ
+Chromosome6	59445333	T	0	*	*	0	*	*	1	.-2AA	:	1	.	J	2	.-2AA.	DJ
+Chromosome6	59445569	A	0	*	*	0	*	*	1	g	J	1	,	J	2	,g	JA
+Chromosome6	59494261	G	1	.	<	0	*	*	1	.-1T	J	1	.-3TTT	F	0	*	*
+Chromosome6	59515689	A	0	*	*	0	*	*	1	G	s	2	,g	JJ	1	,	J
+Chromosome6	59601586	G	2	.A	ss	0	*	*	1	A	o	0	*	*	1	.	s
+Chromosome6	59647475	G	0	*	*	2	.a	VJ	1	,	F	0	*	*	1	A	J
+Chromosome6	59647482	C	0	*	*	2	.-3TAG,-3tag	sJ	1	,	F	0	*	*	1	.-3TAG	J
+Chromosome6	59647500	G	0	*	*	2	A,	sJ	1	,	F	0	*	*	1	A	F
+Chromosome6	59647539	C	0	*	*	2	a,	JJ	1	,	J	0	*	*	1	G	J
+Chromosome6	59655241	A	1	,-1g	A	1	,-1g	a	1	,-1g	J	1	,-1g	J	0	*	*
+Chromosome6	59830166	A	1	,-1t	>	0	*	*	0	*	*	1	,-1t	>	1	,-1t	>
+Chromosome6	59998206	G	2	..	JJ	0	*	*	0	*	*	2	.T	JA	3	.T.	JJJ
+Chromosome6	59998234	A	2	..	JJ	0	*	*	0	*	*	2	.G	JF	3	.G.	JJJ
+Chromosome6	59998263	C	2	..	JJ	0	*	*	0	*	*	2	.T	JJ	3	.T.	JJJ
+Chromosome6	59998266	C	2	T.	FJ	0	*	*	0	*	*	2	..	JA	3	..T	JJF
+Chromosome6	59998269	C	2	..	7J	0	*	*	0	*	*	2	.A	J7	3	.A.	JJJ
+Chromosome6	59998308	C	2	.T	JJ	0	*	*	0	*	*	2	.A	FM	3	.A.	JJJ
+Chromosome6	59998336	T	2	,,	AJ	0	*	*	0	*	*	2	a,	7J	3	,a,	JJJ
+Chromosome6	59998417	T	2	cc	JJ	0	*	*	0	*	*	2	,c	7J	3	c,c	JJJ
+Chromosome6	59998419	A	2	g,	FJ	0	*	*	0	*	*	2	gg	<J	3	,g,	JJJ
+Chromosome6	60186934	T	0	*	*	1	,	J	4	aa,,	JJJF	4	a,,a	JJJJ	2	aa	JJ
+Chromosome6	60188271	C	2	.G	JJ	0	*	*	5	G....	JJJJJ	1	.	J	2	.G	J<
+Chromosome6	60206974	T	0	*	*	2	C.	JJ	1	C	J	0	*	*	3	C.C	JJJ
+Chromosome6	60272590	A	1	.	F	1	G	J	0	*	*	0	*	*	2	.G	JJ
+Chromosome6	60281164	T	0	*	*	1	.	J	0	*	*	3	C..	JJJ	3	C..	JJJ
+Chromosome6	60294838	A	0	*	*	1	.-6TACGAG	9	2	.-6TACGAG.-6TACGAG	89	0	*	*	1	.-6TACGAG	9
+Chromosome6	60295065	T	0	*	*	0	*	*	2	.$c	EJ	1	.	o	1	c	J
+Chromosome6	60296353	T	1	,-1a	J	0	*	*	1	.-1A	J	1	.-1A	7	0	*	*
+Chromosome6	60447285	T	0	*	*	4	C.CC	JJJJ	1	C	J	0	*	*	1	.	J
+Chromosome6	60456693	A	0	*	*	0	*	*	1	.	s	2	.g	sJ	1	g	J
+Chromosome6	60675187	C	0	*	*	1	.	J	1	T	J	2	*.	jJ	0	*	*
+Chromosome6	60777452	T	1	g	J	2	.g	sJ	0	*	*	0	*	*	1	,	J
+Chromosome6	60781001	C	0	*	*	1	T	J	2	.T	os	1	.	s	0	*	*
+Chromosome6	60786154	G	0	*	*	1	C	s	0	*	*	1	.	J	2	,C	sA
+Chromosome6	60786173	G	0	*	*	1	.	s	0	*	*	2	tT	JJ	2	t.	sF
+Chromosome6	60960093	T	0	*	*	0	*	*	1	G	A	1	.	J	2	.G	JF
+Chromosome6	60960134	G	0	*	*	0	*	*	1	A	<	1	.	J	2	.A	JJ
+Chromosome6	60978890	G	0	*	*	0	*	*	1	.	J	1	T	J	2	T.	JJ
+Chromosome6	60979224	C	0	*	*	0	*	*	1	,	A	1	g	J	2	,g	J<
+Chromosome6	61013830	G	2	.+1T.	JJ	3	.+1T..	JJs	1	.	J	0	*	*	0	*	*
+Chromosome6	61013838	C	2	.-1A.	JJ	3	.-1A..	FJs	1	.	J	0	*	*	0	*	*
+Chromosome6	61013851	G	2	C.	JJ	2	C.	Js	1	.	J	0	*	*	0	*	*
+Chromosome6	61013856	A	2	TC	JJ	2	T.	Js	1	C	J	0	*	*	0	*	*
+Chromosome6	61013857	T	2	.G	JJ	2	..	Js	1	G	J	0	*	*	0	*	*
+Chromosome6	61013861	C	2	T.	JJ	3	T..	JJs	1	.	J	0	*	*	0	*	*
+Chromosome6	61013872	T	2	C.	as	3	C..	aks	1	.	o	0	*	*	0	*	*
+Chromosome6	61013921	C	2	G$.$	Jm	3	G$..	ARs	1	.$	m	0	*	*	0	*	*
+Chromosome6	61013968	G	2	,a	JF	2	,,	JJ	1	a	J	0	*	*	0	*	*
+Chromosome6	61014007	A	2	gc	JJ	2	,g	JJ	1	,	J	0	*	*	0	*	*
+Chromosome6	61061736	A	0	*	*	2	C.	7s	2	C.	JJ	0	*	*	1	.	J
+Chromosome6	61061745	C	0	*	*	2	.T	7s	3	.T.	JAJ	0	*	*	1	T	J
+Chromosome6	61061850	G	1	t	A	3	.C.	sRJ	4	A...	JJoo	0	*	*	1	.	A
+Chromosome6	61061865	C	1	a	J	2	..	sJ	2	G.	os	0	*	*	0	*	*
+Chromosome6	61062533	G	1	,	J	0	*	*	0	*	*	1	a	A	2	a,	JJ
+Chromosome6	61062573	T	1	a	J	0	*	*	0	*	*	1	,	J	3	,a.	JJs
+Chromosome6	61062630	A	1	c	J	0	*	*	0	*	*	1	,	J	2	c.	Js
+Chromosome6	61062645	A	1	g	J	0	*	*	0	*	*	1	,	J	2	g.	Js
+Chromosome6	61063621	C	2	A.	;J	1	T	F	2	.,	sJ	0	*	*	0	*	*
+Chromosome6	61063623	G	2	.A	;J	1	.	F	2	T,	sJ	0	*	*	0	*	*
+Chromosome6	61063706	G	1	.	J	0	*	*	2	A,	sJ	0	*	*	1	a	J
+Chromosome6	61063723	C	1	.	J	0	*	*	3	,,T	JFF	1	T	F	2	,T	JJ
+Chromosome6	61063742	G	0	*	*	0	*	*	2	,T	FJ	1	T	J	2	,T	JJ
+Chromosome6	61063747	C	0	*	*	0	*	*	2	,A	JJ	1	A	J	2	,A	JJ
+Chromosome6	61064303	A	1	.	J	0	*	*	2	GG	sJ	0	*	*	2	G,	J7
+Chromosome6	61064304	A	1	.	F	0	*	*	2	GT	sF	0	*	*	2	G,	JF
+Chromosome6	61064315	T	1	C	J	0	*	*	2	.C	sJ	0	*	*	1	.	J
+Chromosome6	61064679	C	0	*	*	2	T.	FJ	4	....	sJJF	1	T	J	1	A	J
+Chromosome6	61126298	C	0	*	*	1	.	s	1	.-1A	s	1	.-1A	s	0	*	*
+Chromosome6	61285276	A	1	.	F	0	*	*	1	G	J	0	*	*	3	GG.	JJF
+Chromosome6	61285286	G	1	A	J	0	*	*	1	.	A	0	*	*	3	.C.	JJJ
+Chromosome6	61285287	G	1	.	J	0	*	*	1	A	7	0	*	*	3	AA.	JJJ
+Chromosome6	61285340	G	1	.	J	0	*	*	1	.-1C	J	0	*	*	3	.-1C.-1C.-1C	FJJ
+Chromosome6	61285478	C	1	g	<	0	*	*	1	,	J	0	*	*	3	gg,	JJJ
+Chromosome6	61285486	T	1	a	F	0	*	*	1	,	J	0	*	*	3	a,,	JJJ
+Chromosome6	61285490	C	1	,	J	0	*	*	1	g	J	0	*	*	3	,t,	JJJ
+Chromosome6	61285498	C	1	t	A	0	*	*	1	,	F	0	*	*	3	tt,	FFF
+Chromosome6	61321090	C	2	t,	JJ	0	*	*	1	,	J	1	T	o	0	*	*
+Chromosome6	61339896	A	1	,	J	1	,-1t	J	0	*	*	0	*	*	2	,-2tt,	FJ
+Chromosome6	61411108	C	0	*	*	0	*	*	1	,-8tttacagt	;	1	,	J	1	,-8tttacagt	;
+Chromosome6	61411141	T	0	*	*	0	*	*	1	,-3tac	:	1	,	F	1	,-3tac	:
+Chromosome6	61616971	C	0	*	*	0	*	*	1	,-2tt	J	1	,-2tt	J	2	,-2tt,	JF
+Chromosome6	61626158	C	0	*	*	1	T	7	2	..	b]	3	..,-9gttctcctt	An6	0	*	*
+Chromosome6	61738473	A	1	,-1t	s	0	*	*	1	,-1t	s	0	*	*	3	,-1t,.	sse
+Chromosome6	61738484	T	1	,-2tg	=	0	*	*	1	,-2tg	=	0	*	*	3	,-2tg,.	=jR
+Chromosome6	61757762	G	1	.	A	0	*	*	1	A	J	3	.T.	JJJ	0	*	*
+Chromosome6	61757785	A	1	.-4GCTT	F	0	*	*	1	.	J	3	.-4GCTT..	HJJ	0	*	*
+Chromosome6	61757786	G	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
+Chromosome6	61757787	C	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
+Chromosome6	61757788	T	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
+Chromosome6	61757789	T	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
+Chromosome6	61757804	G	1	A	<	0	*	*	1	T	J	3	A..	JJJ	0	*	*
+Chromosome6	61757828	G	1	A	A	0	*	*	1	.	J	3	A..	JJJ	0	*	*
+Chromosome6	61757845	A	1	G	J	0	*	*	1	.	F	3	G..	J<7	0	*	*
+Chromosome6	61762214	T	0	*	*	4	,,,,	JJJJ	5	,,c,,	JJJJJ	3	c,,	JJJ	3	,,c	JJJ
+Chromosome6	61780836	C	1	T	F	0	*	*	1	.	J	0	*	*	2	T.	JA
+Chromosome6	61780976	T	1	c	J	0	*	*	1	,	J	0	*	*	2	,c	JF
+Chromosome6	61781001	T	1	c	J	0	*	*	1	,	J	0	*	*	2	,c	JA
+Chromosome6	61781015	G	1	a	J	0	*	*	1	,	J	0	*	*	2	,a	JJ
+Chromosome6	61781056	C	1	a	J	0	*	*	1	,	J	0	*	*	2	,a	JF
+Chromosome6	61912933	C	1	.	J	0	*	*	0	*	*	1	T	s	3	..T	JJJ
+Chromosome6	61912934	G	1	A	J	0	*	*	0	*	*	1	.	s	3	AA.	JJJ
+Chromosome6	61912940	G	1	.	J	0	*	*	0	*	*	1	A	s	3	..A	JJJ
+Chromosome6	61912961	A	1	.	s	0	*	*	0	*	*	1	G	s	3	..G	eRJ
+Chromosome6	61912966	C	1	.	s	0	*	*	0	*	*	1	T	s	3	..T	sjJ
+Chromosome6	61912969	G	1	.	s	0	*	*	0	*	*	1	A	s	3	..A	ssJ
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+Chromosome6	74558653	G	2	,,	JJ	5	a,,,,	JAAJF	6	aa,,,,	FJJJJJ	11	,,a,,,,,,,a	FJJJJJJJJ<J	9	,,,aa,,,a	7JJJJJJJJ
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+Chromosome6	74725029	C	0	*	*	0	*	*	1	.	J	3	T..	JJJ	2	T.	J<
+Chromosome6	74725127	G	0	*	*	0	*	*	1	,	J	3	.a,	fJJ	2	a,	JF
+Chromosome6	75115572	T	1	.	s	1	C	\	0	*	*	2	.C	Vs	0	*	*
+Chromosome6	75115602	G	1	,	J	1	a	7	0	*	*	2	A,	sF	0	*	*
+Chromosome6	75115605	A	1	,	J	1	g	A	0	*	*	2	G,	sF	0	*	*
+Chromosome6	75187567	C	2	T.	oV	0	*	*	1	T	s	2	..	ss	0	*	*
+Chromosome6	75242768	A	2	.-2CC.-2CC	JJ	1	.-2CC	J	3	.-2CC..	JJF	2	..-2CC	jJ	3	.-2CC.-2CC.-2CC	JJJ
+Chromosome6	75245544	G	1	.	J	1	A	a	0	*	*	2	.A	Ja	0	*	*
+Chromosome6	75253977	C	2	TA	FJ	0	*	*	2	A.	FJ	2	..	JJ	2	.G	JF
+Chromosome6	75333677	A	2	g,	JJ	1	g	J	0	*	*	1	,	J	2	,g	JJ
+Chromosome6	75333727	A	2	g,	JJ	1	g	J	0	*	*	1	,	J	2	,g	JJ
+Chromosome6	75333733	G	3	t,,	JAJ	1	t	J	0	*	*	1	,	F	2	,t	AJ
+Chromosome6	75503990	C	1	,	<	2	T,	so	0	*	*	0	*	*	1	t	J
+Chromosome6	75652866	G	1	c	F	0	*	*	1	,	F	4	.,,,-1t	sJJJ	1	t	J
+Chromosome6	75714546	G	0	*	*	1	.	J	0	*	*	3	.AA	sJJ	1	A	J
+Chromosome6	75714573	C	0	*	*	1	.	J	0	*	*	3	.TT	sFF	1	T	J
+Chromosome6	75820361	T	0	*	*	1	,	F	1	g	7	0	*	*	2	,g	JJ
+Chromosome6	75887622	T	1	.-1G	s	0	*	*	1	,-1g	J	1	.	f	0	*	*
+Chromosome6	75913261	C	0	*	*	1	,	F	1	,-3aat	J	0	*	*	1	,-3aat	J
+Chromosome6	75988115	A	0	*	*	1	.-11ACTTGGTTAGT	S	1	.	J	0	*	*	1	.-11ACTTGGTTAGT	:
+Chromosome6	76206843	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	AF
+Chromosome6	76206994	C	0	*	*	0	*	*	1	,	J	2	A,	sJ	2	,a	JA
+Chromosome6	76206996	A	0	*	*	0	*	*	1	g	J	2	G,	sJ	2	,g	JF
+Chromosome6	76207011	T	0	*	*	0	*	*	1	c	J	2	G,	sJ	2	,g	AJ
+Chromosome6	76233963	T	0	*	*	4	,c,,	JJJF	1	,	J	2	,c	JJ	1	c	J
+Chromosome6	76294495	T	1	c	J	0	*	*	1	,	J	2	c,	JJ	0	*	*
+Chromosome6	76294501	A	1	g	J	0	*	*	1	,	J	2	g,	JJ	0	*	*
+Chromosome6	76294520	T	1	c	J	0	*	*	1	,	J	2	c,	JJ	0	*	*
+Chromosome6	76365057	A	0	*	*	0	*	*	1	,	F	1	G	s	2	g,	JJ
+Chromosome6	76411620	G	0	*	*	0	*	*	1	A	o	1	.	s	2	.A	os
+Chromosome6	76505157	C	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J	1	,-1t	F
+Chromosome6	76529450	T	0	*	*	0	*	*	1	.-5CGTGA	[	1	.	`	1	.-5CGTGA	J
+Chromosome6	76575961	T	2	,,	JJ	0	*	*	1	,-1a	F	1	,-1a	J	0	*	*
+Chromosome6	76784603	C	1	,	F	0	*	*	2	,t	<J	1	t	J	0	*	*
+Chromosome6	76791186	G	1	,	F	0	*	*	5	,,,a,	JJJJJ	0	*	*	4	,,,t	JFFJ
+Chromosome6	76825522	T	1	G	J	0	*	*	2	CC	JJ	2	C.	JJ	2	c.	sJ
+Chromosome6	76825818	C	3	A..	sos	1	,	s	1	G	j	0	*	*	1	A	s
+Chromosome6	76854900	G	2	a,	JJ	1	,	J	0	*	*	0	*	*	1	t	J
+Chromosome6	76855127	A	0	*	*	1	C	V	0	*	*	1	.	J	2	G.	JJ
+Chromosome6	76880783	C	1	,-1t	<	1	,-1t	F	1	,-1t	J	1	,-1t	J	0	*	*
+Chromosome6	76910527	G	8	.T...A..	JJJ<AJJJ	3	...	FJJ	14	.........T....	JJJJJJ<JJJJJ7J	0	*	*	14	......A.A.....	JJAJ<JF7JJJJ7J
+Chromosome6	76911118	A	8	,,c,g,,g	J77JJ7<7	3	,,,	FJF	15	,,,,,,,g,,,,,g,	AJA7FJJJJ<JJFAJ	0	*	*	12	,,,,,,,,,g,,	JJF7FJAJJ7<J
+Chromosome6	76911142	G	8	,aa,,,,,	JJ<JJJAJ	3	,a,	JFJ	14	,,,,,a,,,a,,,,	JJFFJJJJFJJJJJ	0	*	*	15	,,,,,,,,,,,,,,,	7JJ7JJ7JJJFJFJJ
+Chromosome6	76911172	A	8	,,g,,,,,	JJJJJF<J	3	,,,	FJJ	15	,,,,,,,,,,g,,,,	FJF<AJJJJJJJJFJ	0	*	*	14	,,g,,,,,,,,,,,	JJJJJFJJJ77FJJ
+Chromosome6	77037688	A	2	..	Ae	0	*	*	2	G.	JJ	2	GG	8J	0	*	*
+Chromosome6	77040531	G	0	*	*	0	*	*	1	.-3TCC	F	1	.-3TCC	J	2	.-3TCC.	JJ
+Chromosome6	77040600	G	0	*	*	0	*	*	1	.-2GA	B	1	.-6GAGAGA	<	2	.-6GAGAGA.-4GAGA	<>
+Chromosome6	77040808	C	0	*	*	0	*	*	1	,	J	1	,-2ta	A	2	,-2ta,	JJ
+Chromosome6	77112261	C	5	,,,,,	JJFJJ	4	,,t,	JJF<	9	,,,,,,,t,	JJ<JJAJJJ	9	,t,,t,t,,	JJJJJAJFJ	7	a,,t,,,	JFJFFJJ
+Chromosome6	77112323	A	5	,,t,t	JJJJF	3	,gt	JJJ	10	,,,,,,,,,t	FJJJFFJ<FJ	7	t,,t,t,	JFJJJJ<	7	g,,,,,t	JJJJJFF
+Chromosome6	77125108	A	2	,-1t,	FJ	3	,-1t,-1t,	AJJ	3	,-1t,-1t,-1t	FJJ	0	*	*	3	,-1t,-1t,	JJJ
+Chromosome6	77179125	G	0	*	*	2	,,	JJ	8	,a,,,,,,	JJJJJJJJ	4	a,,,	AJFJ	6	,,aa,,	JJJJJJ
+Chromosome6	77326754	A	2	TT	JJ	2	T.	FJ	1	.	J	0	*	*	0	*	*
+Chromosome6	77493461	A	1	T	F	0	*	*	3	..T	JJJ	2	..	FJ	0	*	*
+Chromosome6	77493463	T	1	.	F	0	*	*	3	.A.	JJJ	2	AA	7J	0	*	*
+Chromosome6	77493527	C	1	T	J	0	*	*	3	..T	JJJ	2	..	AJ	0	*	*
+Chromosome6	77493633	A	1	g	J	0	*	*	4	.gg,	sJJJ	3	.gg	sJJ	0	*	*
+Chromosome6	77493705	C	1	t	F	0	*	*	4	.,t,	jJJJ	3	.,a	oJJ	0	*	*
+Chromosome6	77493712	T	1	,	F	0	*	*	4	A,,a	eJJJ	3	.,a	sFJ	0	*	*
+Chromosome6	77493741	C	1	t	F	0	*	*	4	,t,,	JJJJ	3	.,,	sJJ	0	*	*
+Chromosome6	77673599	T	0	*	*	1	.-2CA	J	1	.	J	1	.-2CA	j	0	*	*
+Chromosome6	77693540	C	1	,	J	2	t,	JF	0	*	*	0	*	*	1	g	F
+Chromosome6	77826433	T	1	.-1A	J	0	*	*	1	.	J	0	*	*	1	.-1A	J
+Chromosome6	78045481	T	0	*	*	1	.	j	0	*	*	2	.G	MJ	1	G	J
+Chromosome6	78047275	A	1	t	J	4	.,,,	sJJF	0	*	*	0	*	*	3	,t,	JJF
+Chromosome6	78053167	C	0	*	*	0	*	*	2	..	sJ	2	.G	JJ	1	g	J
+Chromosome6	78091490	T	0	*	*	0	*	*	4	,,,,	JJJJ	2	g,	JJ	4	,c,,	JJFJ
+Chromosome6	78091512	G	0	*	*	0	*	*	4	,,,,	JJJJ	3	,t,	JJJ	4	,,t,	FJJJ
+Chromosome6	78097276	G	0	*	*	1	.	s	2	,t	FF	3	,t,	JJJ	0	*	*
+Chromosome6	78107316	A	0	*	*	0	*	*	1	g	J	2	,g	JJ	1	,	<
+Chromosome6	78307093	T	0	*	*	0	*	*	1	G	s	2	.A	ss	1	A	s
+Chromosome6	78359870	C	0	*	*	2	,,	A7	1	,-4ccaa	5	3	,,-4ccaa,-4ccaa	>57	4	,,-4ccaa,-4ccaa,-4ccaa	E555
+Chromosome6	78368947	A	1	.	J	2	.T	JJ	3	.TT	JJ7	3	T..	JJJ	6	T.TT..	JJJJJJ
+Chromosome6	78480127	C	1	t	J	3	,,t	JJJ	7	,,,,t,,	J7JA<JJ	2	..	sJ	6	,,,,,t	JAJFJJ
+Chromosome6	78480670	G	1	,	J	0	*	*	2	A.	Fk	2	A.	eJ	0	*	*
+Chromosome6	78480735	G	1	,	F	0	*	*	2	A.	Qs	2	.a	`<	0	*	*
+Chromosome6	78543183	G	2	A.	JJ	0	*	*	4	,A..	oJAJ	0	*	*	3	...	JJJ
+Chromosome6	78543189	A	2	T.	JJ	0	*	*	4	,T..	f<JJ	0	*	*	4	....	FJFJ
+Chromosome6	78543231	T	2	C.	JJ	0	*	*	3	C..	AJJ	1	C	J	4	....	FJFJ
+Chromosome6	78543289	C	2	T.	JF	1	T	J	4	T...	JAJJ	1	.	J	4	.T..	FJ7J
+Chromosome6	78699018	C	1	.	<	1	.-1A	J	0	*	*	0	*	*	1	.-1A	J
+Chromosome6	78854139	A	0	*	*	1	.	s	2	.G	JJ	0	*	*	2	G.	AJ
+Chromosome6	78854145	A	0	*	*	1	.	s	2	.C	JJ	0	*	*	2	C.	JJ
+Chromosome6	78854155	A	0	*	*	1	.	s	1	G	J	0	*	*	2	G.	JJ
+Chromosome6	78864971	G	0	*	*	0	*	*	1	A	s	2	,A	Js	1	,	<
+Chromosome6	79031452	C	1	.-1T	9	1	.-1T	=	1	.-1T	9	0	*	*	0	*	*
+Chromosome6	79104423	T	1	.-25CCATGCGGCGCTGGAACAGATAGAC	]	2	.-25CCATGCGGCGCTGGAACAGATAGAC.-25CCATGCGGCGCTGGAACAGATAGAC	N]	1	.-25CCATGCGGCGCTGGAACAGATAGAC	O	0	*	*	0	*	*
+Chromosome6	79159275	A	2	,t	77	1	g	J	0	*	*	0	*	*	2	,,	JJ
+Chromosome6	79199862	A	0	*	*	5	....C	<JJJJ	0	*	*	1	.	J	1	C	J
+Chromosome6	79199909	A	0	*	*	5	....G	FJJJJ	0	*	*	1	.	J	1	G	J
+Chromosome6	79199945	C	0	*	*	6	....T.	AJJJJJ	0	*	*	1	.	J	1	T	J
+Chromosome6	79199967	T	0	*	*	4	..G.	JJJj	0	*	*	1	.	J	1	G	J
+Chromosome6	79200148	A	0	*	*	3	,,g	JJF	0	*	*	2	,.	JJ	1	g	A
+Chromosome6	79200248	C	0	*	*	2	t,	JF	0	*	*	1	.	R	1	t	J
+Chromosome6	79313827	C	0	*	*	1	.-3GAA	s	0	*	*	2	..-3GAA	JJ	1	.	s
+Chromosome6	79357297	A	1	.-1G	J	0	*	*	1	.-1G	J	0	*	*	1	.-1G	s
+Chromosome6	79457260	A	0	*	*	1	,	J	2	g,	JJ	2	g,	JJ	4	,,g,	JFJJ
+Chromosome6	79495741	A	0	*	*	2	..	JJ	2	g.	sJ	1	G	J	0	*	*
+Chromosome6	79528839	T	1	.-1G	J	0	*	*	1	.	J	0	*	*	2	.-1G,	JJ
+Chromosome6	79529284	T	0	*	*	2	..	ko	6	.C...,	sssssJ	2	C.	sj	0	*	*
+Chromosome6	79553847	C	1	T	J	1	.	J	0	*	*	2	.T	J5	0	*	*
+Chromosome6	79553885	T	1	A	J	1	.	<	0	*	*	2	.A	JJ	0	*	*
+Chromosome6	79558312	G	1	.	J	1	A	F	3	AA.	JJJ	0	*	*	0	*	*
+Chromosome6	79638561	G	1	.-8CTCTCTCT	J	1	.	J	0	*	*	0	*	*	1	.-10CTCTCTCTCT	J
+Chromosome6	79666718	A	2	T.	FJ	1	.	J	1	T	J	0	*	*	0	*	*
+Chromosome6	79666723	T	2	.G	<F	1	G	J	1	.	A	0	*	*	0	*	*
+Chromosome6	79666727	G	2	.T	7F	1	T	J	1	.	J	0	*	*	0	*	*
+Chromosome6	79682571	A	0	*	*	0	*	*	3	...-1G	JJJ	1	.	J	1	.-1G	F
+Chromosome6	79682572	G	0	*	*	0	*	*	3	..*	JJJ	1	.	J	1	*	F
+Chromosome6	79682591	C	0	*	*	0	*	*	3	..G	JFJ	1	.	J	1	G	<
+Chromosome6	79682600	G	0	*	*	0	*	*	3	..A	JFF	1	.	J	1	A	7
+Chromosome6	79682652	C	0	*	*	0	*	*	3	..T	JJJ	1	.	J	1	T	<
+Chromosome6	79801217	T	1	.-1C	F	1	,-1c	J	1	,	F	0	*	*	0	*	*
+Chromosome6	79861429	C	0	*	*	3	t,,	JJJ	1	,	J	0	*	*	1	t	F
+Chromosome6	79861453	A	0	*	*	3	t,,	JJJ	1	,	J	0	*	*	1	t	A
+Chromosome6	79935182	G	2	t,	JJ	3	,t,	F<J	0	*	*	0	*	*	1	,	J
+Chromosome6	80127387	G	0	*	*	0	*	*	1	A	J	3	..-7TCCCTAA.	JJJ	1	.-7TCCCTAA	J
+Chromosome6	80127552	G	0	*	*	2	,-7accctaa,	<F	2	.,	C7	3	a,,	A<s	3	a.a	JV<
+Chromosome6	80127564	T	0	*	*	2	,-1a,-1a	JJ	2	,-1a,-1a	AA	4	c,-1a,,-1a	JJsJ	2	.-1A,	J7
+Chromosome6	80139826	A	8	tccccccc	JJJJJJFJ	1	,	J	5	t,ccc	JJJJJ	5	ccccc	JJJJJ	9	tctctcccc	JJJJJFJJJ
+Chromosome6	80150634	T	2	C.	AJ	1	C	J	0	*	*	0	*	*	1	.	J
+Chromosome6	80150650	A	2	C.	7F	1	C	V	0	*	*	0	*	*	1	.	J
+Chromosome6	80207111	A	0	*	*	1	.	7	1	T	J	2	T.	FJ	0	*	*
+Chromosome6	80207328	T	0	*	*	1	,	7	1	c	J	2	,c	JJ	0	*	*
+Chromosome6	80280789	A	3	,-1c,-1c,-1c	FJJ	1	,-1c	J	3	,-1c,-1c.	J<s	0	*	*	2	,-1c,-1c	JF
+Chromosome6	80284209	C	1	,	J	1	,-3tgg	J	1	,-3tgg	A	0	*	*	0	*	*
+Chromosome6	80293527	A	0	*	*	2	.G	sF	2	,.	qF	0	*	*	1	G	J
+Chromosome6	80314002	C	0	*	*	0	*	*	1	.-4ACGT	<	2	.-4ACGT.-4ACGT	<<	1	.-4ACGT	<
+Chromosome6	80504111	C	0	*	*	1	T	s	2	.T	ss	0	*	*	1	.	s
+Chromosome6	80539407	T	2	,c	JF	2	cc	JJ	3	cc,	JJF	1	,	J	3	cc,	JJF
+Chromosome6	80569549	A	0	*	*	1	.-1T	s	0	*	*	1	.-1T	j	1	.	s
+Chromosome6	80581525	C	1	.-1T	F	0	*	*	1	.	J	0	*	*	1	.-1T	J
+Chromosome6	80586552	A	0	*	*	3	..T	JJF	2	T.	sA	0	*	*	1	.	F
+Chromosome6	80586563	C	0	*	*	3	G.G	JJJ	2	G.	sJ	0	*	*	1	.	F
+Chromosome6	80629825	G	0	*	*	2	..	sJ	0	*	*	1	T	J	2	.T	JJ
+Chromosome6	80718089	G	1	A	J	0	*	*	1	.	A	2	A.	F=	0	*	*
+Chromosome6	80718159	C	1	T	J	0	*	*	1	.	J	2	T.	FJ	0	*	*
+Chromosome6	80718195	G	1	.	F	0	*	*	1	A	J	2	.A	oJ	0	*	*
+Chromosome6	80729181	A	0	*	*	2	C.	Jc	1	.	J	0	*	*	1	C	J
+Chromosome6	80729253	T	0	*	*	2	.*	Fo	1	*	<	0	*	*	1	,	F
+Chromosome6	80729254	A	0	*	*	2	.*	7o	1	*	<	0	*	*	1	,	J
+Chromosome6	80731833	A	2	TT	JJ	0	*	*	2	T.	JF	0	*	*	1	.	<
+Chromosome6	80731841	T	2	.-10GATATGAATA.-10GATATGAATA	66	0	*	*	2	.-10GATATGAATA.	6J	0	*	*	1	.	J
+Chromosome6	80731910	G	2	TT	FJ	0	*	*	2	T.	JJ	0	*	*	1	.	<
+Chromosome6	80736524	A	1	.	J	0	*	*	0	*	*	1	.-19CCTGGCCATTCCCCGCCCG	5	1	.-10CCTGGCCATT	6
+Chromosome6	80736612	A	0	*	*	1	.-3GCC	J	0	*	*	1	.	J	1	.-3GCC	J
+Chromosome6	80777812	C	1	.-3TTT	J	0	*	*	1	.-2TT	o	0	*	*	1	.-2TT	J
+Chromosome6	80784258	C	1	.-1A	s	1	.-1A	J	0	*	*	1	.	J	0	*	*
+Chromosome6	80795524	C	3	..T	JJJ	0	*	*	2	.t	JJ	2	..	kJ	0	*	*
+Chromosome6	80806207	C	4	,t,t	JJJF	0	*	*	1	,	F	0	*	*	1	t	J
+Chromosome6	80811284	T	1	c	J	1	,	J	3	,,c	JJJ	0	*	*	0	*	*
+Chromosome6	80811291	C	1	,	J	1	t	J	3	t,,	JJJ	0	*	*	0	*	*
+Chromosome6	80857204	G	11	...+1T........+2TT	JFJJJJJJJJJ	0	*	*	7	...+1T.+1T.-1T..	JJ7HJJJ	2	..-1T	JJ	8	........+1T	JJJFJJJJ
+Chromosome6	80862541	A	2	T.	JJ	1	.	J	5	.T...	JJJJF	0	*	*	1	T	J
+Chromosome6	80865279	G	1	.-3TGT	9	1	.-3TGT	9	1	.-3TGT	9	0	*	*	3	.-3TGT.-3TGT.-3TGT	999
+Chromosome6	81181376	C	0	*	*	1	T	J	0	*	*	2	T.	JJ	1	.	J
+Chromosome6	81181467	T	0	*	*	1	A	s	0	*	*	2	A.	ss	1	.	s
+Chromosome6	81181480	G	0	*	*	1	A	s	0	*	*	2	A.	ss	1	.	s
+Chromosome6	81181552	G	0	*	*	1	t	J	0	*	*	2	,t	JJ	1	,	J
+Chromosome6	81181569	C	0	*	*	1	,	J	0	*	*	2	t,	JJ	1	t	J
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+Chromosome6	81189157	A	0	*	*	1	,	J	4	,ggg	JJJJ	0	*	*	1	g	J
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+Chromosome6	81264012	A	0	*	*	0	*	*	1	,$	J	1	,-4cggg	F	1	,-4cggg	F
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+Chromosome6	81280368	C	0	*	*	1	.-1T	s	1	.-1T	7	0	*	*	4	....-1T	JJJJ
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+Chromosome6	81356834	G	0	*	*	2	..	`s	0	*	*	2	.T	oJ	1	T	A
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+Chromosome6	81514503	C	1	A	J	0	*	*	0	*	*	2	.A	AJ	1	.	J
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+Chromosome6	81664753	T	0	*	*	2	C.	JJ	2	C.	Js	0	*	*	1	.	J
+Chromosome6	81738646	A	0	*	*	0	*	*	2	G.	ja	2	.G	sa	2	..	`o
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+Chromosome6	83245011	G	0	*	*	0	*	*	3	A..	FJJ	1	.	A	2	..-1A	FJ
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+Chromosome6	83769227	C	2	,a	F7	0	*	*	2	,a	JJ	0	*	*	1	a	A
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+Chromosome6	84785207	T	0	*	*	0	*	*	1	.-1C	e	1	,-1c	e	1	.	5
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+Chromosome6	85120790	A	0	*	*	1	,	J	2	c,	AJ	0	*	*	1	c	J
+Chromosome6	85195779	C	1	A	F	0	*	*	0	*	*	1	.	J	2	.T	JA
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+Chromosome6	85278672	C	0	*	*	3	.TT	sss	1	T	s	0	*	*	1	.	J
+Chromosome6	85282418	T	0	*	*	0	*	*	2	,c	7F	1	,	J	1	c	G
+Chromosome6	85285955	A	1	.	A	0	*	*	2	..-4GCTC	JJ	1	.-4GCTC	J	0	*	*
+Chromosome6	85285970	T	1	.	J	0	*	*	2	.C	J>	1	C	:	0	*	*
+Chromosome6	85286221	G	1	,-4tcga	J	0	*	*	3	.-4TCGA,-4tcga,-4tcga	S::	1	,-4tcga	F	0	*	*
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+Chromosome6	85590837	G	1	.	J	1	C	s	0	*	*	0	*	*	2	.C	JJ
+Chromosome6	85778217	G	2	,,	JJ	0	*	*	0	*	*	2	a,	JJ	2	aa	AJ
+Chromosome6	85793975	G	0	*	*	0	*	*	4	A.AA	FFFA	2	A.	<<	1	.	F
+Chromosome6	85887688	T	1	,	J	1	c	J	0	*	*	0	*	*	5	,c,,,	JJAFJ
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+Chromosome6	86371758	G	0	*	*	2	,a	AJ	0	*	*	2	,,	JJ	2	,a	JJ
+Chromosome6	86390729	A	2	,t	JJ	1	c	J	2	t,	JA	2	tt	JJ	3	t,,	FJJ
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+Chromosome6	86588906	G	2	.A	J<	0	*	*	2	A.	AA	0	*	*	6	......	F7JJJJ
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+Chromosome6	86589374	C	3	tt,	F7J	0	*	*	2	,,	JA	0	*	*	6	,,t,,,	<J7FJF
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+Chromosome6	86592029	G	2	A.	JJ	0	*	*	0	*	*	1	.	J	2	A.	JJ
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+Chromosome6	86593368	C	2	,t	JJ	1	t	J	0	*	*	0	*	*	2	,,	JJ
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+Chromosome6	87913753	G	6	.A....	JJJJJJ	10	........A.	JJJJF7JJJJ	12	........A...	JJJJJJJJJJJJ	2	T.	JJ	18	...A..A....A......	JFJJJJJJFJJJJJJJJJ
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+Chromosome6	89320906	C	1	.-3AGT	F	1	.-3AGT	J	1	.	J	0	*	*	0	*	*
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+Chromosome6	91548079	C	0	*	*	3	gt,	JJJ	2	,t	JB	0	*	*	2	t,	JJ
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+Chromosome6	111023850	G	1	.	J	0	*	*	1	.-12AGCGGCCGTACC	H	0	*	*	1	.-12AGCGGCCGTACC	G
+Chromosome6	111029443	T	2	.G	JJ	1	.	J	1	G	J	0	*	*	0	*	*
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+Chromosome6	142543606	G	0	*	*	1	a	A	2	a.	Fs	0	*	*	1	.	s
+Chromosome6	142543621	C	0	*	*	1	,-2gt	A	2	,-2gt.	Js	0	*	*	1	.-2GT	s
+Chromosome6	142588447	A	3	..G	ssJ	1	.	s	0	*	*	1	G	s	0	*	*
+Chromosome6	142588456	A	3	..C	ssF	1	.	s	0	*	*	1	C	s	0	*	*
+Chromosome6	142588496	T	3	,,c	JJJ	1	,	J	0	*	*	1	c	J	0	*	*
+Chromosome6	142627030	T	2	.C	JJ	1	.	J	2	C.	JJ	1	C	J	0	*	*
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+Chromosome6	142627178	T	2	,a	JJ	1	,	F	2	a,	JJ	1	a	J	0	*	*
+Chromosome6	142627209	A	2	,g	JJ	1	,	J	2	g,	JJ	1	g	J	0	*	*
+Chromosome6	142641092	T	1	C	?	0	*	*	2	C.	J7	0	*	*	1	.	J
+Chromosome6	142641270	T	1	a	J	0	*	*	2	a.	Js	0	*	*	2	a,	JJ
+Chromosome6	142682351	G	1	.	F	0	*	*	1	C	<	0	*	*	2	C.	JJ
+Chromosome6	142682590	G	1	,	J	0	*	*	1	a	F	0	*	*	2	a,	JF
+Chromosome6	142682619	A	1	,	F	0	*	*	1	t	J	0	*	*	2	t,	JJ
+Chromosome6	142682651	C	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*	2	,-1t,-1t	JJ
+Chromosome6	142682677	G	1	,	J	0	*	*	1	a	F	0	*	*	2	a,	JJ
+Chromosome6	142682685	C	1	,	J	0	*	*	1	t	J	0	*	*	2	t,	JJ
+Chromosome6	142682713	T	1	,	J	0	*	*	1	,-1g	H	0	*	*	2	,-1g,	HJ
+Chromosome6	142682714	G	1	,	J	0	*	*	1	*	H	0	*	*	2	*,	HJ
+Chromosome6	142767745	C	9	,,,t,,,,,	JJJJJJJJJ	1	t	J	5	t,,,,	JJJFJ	1	,	J	5	t,,,,	JJJJJ
+Chromosome6	142863600	T	2	,-1g,-1g	JJ	2	,-1g,-1g	FF	3	,-1g,-1g,-1g	JJJ	0	*	*	2	,-1g,-1g	J<
+Chromosome6	142955321	A	1	c	J	0	*	*	0	*	*	3	,cc	JJJ	1	,	J
+Chromosome6	143060038	G	0	*	*	1	.	J	2	c.	Js	1	C	s	0	*	*
+Chromosome6	143198119	G	1	A	F	0	*	*	0	*	*	2	..	JJ	2	.A	FJ
+Chromosome6	143198141	T	1	G	J	0	*	*	0	*	*	2	..	JJ	2	.G	<J
+Chromosome6	143219661	G	0	*	*	1	T	J	3	TT.	JJJ	2	..	<J	3	T.T	JJJ
+Chromosome6	143346450	C	1	,-2ta	J	1	,	J	1	,-2ta	J	0	*	*	0	*	*
+Chromosome6	143398828	A	1	g	J	0	*	*	2	,$G	As	2	,g	J;	0	*	*
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+Chromosome6	143443288	G	0	*	*	0	*	*	1	.	J	2	.C	JJ	1	C	J
+Chromosome6	143443318	G	0	*	*	0	*	*	1	T	J	2	.A	JJ	1	.	J
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+Chromosome6	143553267	A	2	,-1g,-1g	JJ	0	*	*	1	,-1g	A	1	,-1g	J	1	,-1g	J
+Chromosome6	143776589	G	0	*	*	3	...	JJJ	2	AA	JF	0	*	*	3	.AA	JJJ
+Chromosome6	143840284	T	0	*	*	0	*	*	1	C	J	2	..	JJ	3	.CC	JJJ
+Chromosome6	143840561	T	0	*	*	0	*	*	1	c	J	2	,c	<J	3	c,c	JJF
+Chromosome6	143888799	C	1	,	J	3	,a,	JJF	0	*	*	0	*	*	1	a	J
+Chromosome6	143904234	G	3	A.A	JJJ	1	.	s	0	*	*	0	*	*	1	A	F
+Chromosome6	143904996	C	1	a	J	2	,a	JJ	0	*	*	0	*	*	1	,	<
+Chromosome6	143906341	C	3	tt,	JJA	0	*	*	1	,	J	1	t	J	0	*	*
+Chromosome6	143907269	A	0	*	*	0	*	*	2	CC	JJ	1	.	J	2	.C	JJ
+Chromosome6	143936418	T	2	G.	JJ	1	G	J	8	..GGGGG.	JJJJJJJJ	2	..	JJ	4	.G.G	JFJJ
+Chromosome6	144064369	A	0	*	*	0	*	*	2	C.	Fs	1	C	J	2	C.	Fs
+Chromosome6	144064374	A	0	*	*	0	*	*	2	G.	Fs	1	G	J	2	..	Js
+Chromosome6	144064420	T	0	*	*	0	*	*	2	C.	os	1	C	`	2	..	js
+Chromosome6	144074161	T	0	*	*	1	c	J	2	.c	sF	0	*	*	1	,	J
+Chromosome6	144460526	T	2	..	JJ	0	*	*	2	.G	Js	0	*	*	3	G..	J7F
+Chromosome6	144460527	T	2	AA	FJ	0	*	*	2	..	Js	0	*	*	2	.A	JJ
+Chromosome6	144460552	G	2	..	JA	0	*	*	2	.A	Js	0	*	*	3	A..	JAF
+Chromosome6	144460570	G	2	..	JJ	0	*	*	2	.A	Js	0	*	*	3	A..	JAJ
+Chromosome6	144460573	G	2	..	JJ	0	*	*	2	.T	Js	0	*	*	2	T.	JJ
+Chromosome6	144460590	G	2	..	JA	0	*	*	2	.A	Js	0	*	*	3	A..	J7J
+Chromosome6	144460591	C	2	AA	JF	0	*	*	2	A.	Js	0	*	*	3	.AA	<F<
+Chromosome6	144487216	A	0	*	*	3	GG.	JJf	2	G.	FJ	2	..	JJ	0	*	*
+Chromosome6	144529523	C	1	,-6tatata	J	1	,	J	1	,-6tatata	J	0	*	*	2	,-6tatata,-6tatata	JJ
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+Chromosome6	144639359	T	0	*	*	1	.	s	1	A	J	0	*	*	2	.A	sJ
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+Chromosome6	144719884	G	1	.-3GCA	O	1	.	s	0	*	*	0	*	*	2	,-3gca.-3GCA	OO
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+Chromosome6	144930712	C	0	*	*	1	.-1T	s	1	.-1T	s	1	.-1T	s	0	*	*
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+Chromosome6	145104999	C	1	t	J	0	*	*	2	t,	JJ	2	,,	JJ	0	*	*
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+Chromosome6	145125587	C	0	*	*	0	*	*	2	..	JJ	2	A.	JJ	4	..A.	JJJJ
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+Chromosome6	145202057	A	0	*	*	0	*	*	2	.G	JJ	1	G	F	4	GG..	JJJJ
+Chromosome6	145202058	A	0	*	*	1	.	F	2	.G	FJ	1	G	F	4	GG..	JJJJ
+Chromosome6	145202257	C	0	*	*	0	*	*	2	t,	JJ	1	,	J	4	,,tt	JJJJ
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+Chromosome6	145251367	A	0	*	*	0	*	*	1	G	V	2	C$G	Js	4	.GG$G	sGJQ
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+Chromosome6	145382362	T	0	*	*	0	*	*	1	.	J	2	A.	JJ	1	A	J
+Chromosome6	145382415	T	0	*	*	0	*	*	1	.	J	2	C.	JJ	1	C	J
+Chromosome6	145391638	A	1	.	J	0	*	*	2	GG	JJ	3	G..	sJJ	0	*	*
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+Chromosome6	145398691	G	0	*	*	1	a	J	0	*	*	1	.	j	2	,a	JA
+Chromosome6	145398750	C	0	*	*	1	a	J	0	*	*	1	.	e	2	,a	JF
+Chromosome6	145433332	G	0	*	*	2	a.	Jo	2	,,	JJ	2	,a	JJ	0	*	*
+Chromosome6	145434927	A	4	,,,,	JJJJ	3	C,,	sJJ	2	t,	JA	7	,tct,,,	JFJFJJ<	4	,t,t	JJFJ
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+Chromosome6	145437187	G	0	*	*	1	A	k	0	*	*	3	A..	sso	3	...	sss
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+Chromosome6	145494853	A	2	.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT	GF	0	*	*	2	..	JJ	0	*	*	1	.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT	<
+Chromosome6	145498907	A	1	,	F	2	,c	F<	0	*	*	1	c	<	0	*	*
+Chromosome6	145550803	T	9	,.,,,gg,g	Js77J7JJF	3	G$G,	JaJ	2	.g	ss	3	ggg	JJJ	7	Gg,g,,,	kJ7<JJJ
+Chromosome6	145883542	C	0	*	*	1	.	s	1	A	s	3	..a	soj	0	*	*
+Chromosome6	145912184	C	0	*	*	0	*	*	1	t	F	1	,	J	2	t,	JJ
+Chromosome6	145912948	C	2	A.	JJ	1	A	F	2	.A	JJ	0	*	*	1	T	J
+Chromosome6	145917101	C	3	..T	FJJ	2	.T	JJ	4	....	J7JJ	2	T.	FJ	2	T.	JJ
+Chromosome6	146016056	A	2	,g	JF	3	,,g	FJJ	0	*	*	0	*	*	1	,	7
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+Chromosome6	146084625	A	0	*	*	0	*	*	1	g	J	3	,g,	JJJ	1	,	J
+Chromosome6	146148158	T	0	*	*	1	c	J	0	*	*	1	,	<	2	,c	JJ
+Chromosome6	146185301	C	1	a	F	0	*	*	1	,	F	0	*	*	2	a,	JF
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+Chromosome6	146185315	A	1	*	F	0	*	*	1	,	A	0	*	*	2	*,	J7
+Chromosome6	146190224	A	2	G.	JJ	0	*	*	0	*	*	2	.G	FJ	1	.	A
+Chromosome6	146190225	G	2	A.	A<	0	*	*	0	*	*	3	..A	AAJ	1	.	J
+Chromosome6	146190255	G	2	.-2TC.	eJ	0	*	*	0	*	*	3	..-2TC.-2TC	J=s	1	.-2TC	f
+Chromosome6	146235361	A	0	*	*	1	.	<	2	.G	JJ	5	.G...	JJJJJ	4	G...	FJFJ
+Chromosome6	146235549	T	0	*	*	2	A,	sJ	2	,,	FJ	5	,aa,a	JJJJ<	3	aaa	JJJ
+Chromosome6	146247233	G	1	.	J	0	*	*	1	A	J	0	*	*	2	.A	JJ
+Chromosome6	146425890	G	1	.-4TCGA	7	0	*	*	1	.-4TCGA	7	2	.-4TCGA.-4TCGA	JM	0	*	*
+Chromosome6	146442044	A	1	,	F	1	,-1t	<	1	,-1t	B	0	*	*	0	*	*
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+Chromosome6	146866505	G	0	*	*	0	*	*	1	.	o	1	A	s	2	.A	sJ
+Chromosome6	146866556	T	0	*	*	0	*	*	1	,	J	1	G	s	2	G.	sJ
+Chromosome6	146944658	G	2	A.	7J	0	*	*	1	.	J	1	A	J	0	*	*
+Chromosome6	147003198	C	1	t	J	3	t,,	JJJ	3	,,t	JJJ	1	,	J	2	a,	JJ
+Chromosome6	147038868	A	0	*	*	1	g	J	1	,	J	0	*	*	2	g,	JJ
+Chromosome6	147038896	A	0	*	*	1	t	J	1	,	J	0	*	*	2	t,	JJ
+Chromosome6	147360171	T	0	*	*	1	A	J	3	A..	JJJ	0	*	*	5	.....	JJJJJ
+Chromosome6	147515182	C	1	.	J	0	*	*	0	*	*	3	..+3GAT.	sJs	1	.-3GAT	J
+Chromosome6	147515275	T	1	.	J	0	*	*	0	*	*	3	.G,	oo:	1	G	J
+Chromosome6	147666885	C	5	,a,,a	JAJJJ	2	,a	JJ	6	,,,a,a	7AJJJJ	3	,,,	JJJ	4	,,a,	FJFJ
+Chromosome6	147666914	G	4	,,,t	FJJJ	0	*	*	6	,,,t,,	JJJJFJ	3	,,,	JJJ	4	,,t,	FJJJ
+Chromosome6	147666915	A	4	,,gt	JJJJ	0	*	*	5	gg,g,	JJJJJ	3	,,,	JJJ	4	,,g,	FJJJ
+Chromosome6	147666917	C	4	,a,,	JJJJ	0	*	*	5	a,,,,	JJJJJ	3	,,,	JJJ	4	,,,a	FJJJ
+Chromosome6	147696786	A	2	.G	AF	3	GG.	7J<	1	G	F	2	.G	J<	2	G.	JA
+Chromosome6	147752900	G	2	,-11tagtccaattt,	7J	0	*	*	0	*	*	1	,	F	3	A,,	sJJ
+Chromosome6	147752922	C	2	g,	JJ	0	*	*	0	*	*	1	,	J	3	,,t	FJJ
+Chromosome6	147753829	T	1	,	F	0	*	*	2	c,	Js	1	c	J	1	g	J
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+Chromosome6	147888570	C	1	T	J	1	.	J	0	*	*	0	*	*	2	T.	JJ
+Chromosome6	147888576	A	1	G	J	1	.	J	0	*	*	0	*	*	2	G.	J<
+Chromosome6	147888768	G	1	a	7	1	,	J	0	*	*	0	*	*	2	a,	8F
+Chromosome6	147888873	A	1	,	F	1	g	J	0	*	*	0	*	*	2	,g	JJ
+Chromosome6	147961854	C	3	,,t	JJJ	1	,	s	0	*	*	1	g	s	0	*	*
+Chromosome6	147961881	G	3	,aa	JJJ	1	,	s	0	*	*	1	a	s	0	*	*
+Chromosome6	147997554	G	1	,	J	1	a	J	0	*	*	2	a,	JJ	0	*	*
+Chromosome6	147997619	T	1	c	<	1	,	J	0	*	*	2	c,	JJ	0	*	*
+Chromosome6	147997623	C	1	,	F	1	t	J	0	*	*	2	,t	FJ	0	*	*
+Chromosome6	148158071	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
+Chromosome6	148158101	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
+Chromosome6	148158167	C	0	*	*	1	.	k	4	..tt	ssJJ	0	*	*	2	.a	jJ
+Chromosome6	148158183	G	0	*	*	1	A	H	4	..aa	ssJJ	0	*	*	2	.,	oF
+Chromosome6	148158199	G	0	*	*	1	t	J	4	,,,,	JFJJ	0	*	*	2	c,	JA
+Chromosome6	148158200	C	0	*	*	1	,	J	4	t,,t	JJFJ	0	*	*	2	,t	AJ
+Chromosome6	148158203	A	0	*	*	1	,	J	4	g,,g	JJJJ	0	*	*	2	t,	<7
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+Chromosome6	216584528	A	3	..C	AJJ	2	CC	FF	6	C.C.C.	JJJJJJ	6	...C.C	JJJFJJ	6	..CC..	<JJJJJ
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+Chromosome6	216584774	T	3	,g,	JJA	2	gg	JA	5	,,,gg	JJJJJ	5	,,g,,	JJJJJ	6	,,gg,,	JJJJJJ
+Chromosome6	216584811	G	3	,aa	AFF	2	ta	FA	4	a,aa	FFFF	4	,a,a	FFFF	6	,,aa,,	F<FFFF
+Chromosome6	216777691	T	3	...	JJJ	0	*	*	4	.C..	JJJJ	1	C	J	0	*	*
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+Chromosome6	216797333	T	1	.	e	0	*	*	0	*	*	1	G	J	2	.G	FJ
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+Chromosome6	216937547	T	0	*	*	1	,-1g	A	0	*	*	1	.-1G	e	2	.-1G,-1g	BC
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+Chromosome6	217264846	C	4	,,,t	FJJJ	4	,,,t	JAF7	2	,,	JJ	5	.tt,t	sJJJJ	7	.,,t,t,	rJJJJFJ
+Chromosome6	217264888	G	4	aaaa	JJJJ	4	aaa,	JJJJ	2	,,	JJ	5	,,a,,	JJJJJ	7	a,a,,a,	JJJJJAJ
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+Chromosome6	217316014	T	1	A	J	0	*	*	2	A.	J<	1	.	s	0	*	*
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+Chromosome6	217588125	A	2	G.	Js	1	.	J	0	*	*	0	*	*	2	.G	JJ
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+Chromosome6	217654808	G	0	*	*	1	.	J	2	.C	Js	0	*	*	1	C	J
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+Chromosome6	217669291	C	0	*	*	1	.	o	2	T.	ss	0	*	*	2	TT	os
+Chromosome6	217669739	C	2	A.	ea	1	A	o	0	*	*	2	A.	js	6	AA.A..	saojss
+Chromosome6	217682608	T	3	..*	JJ5	1	.	J	0	*	*	0	*	*	2	G.	JF
+Chromosome6	217682962	T	3	,,a	J7J	1	,	J	0	*	*	0	*	*	2	,a	JJ
+Chromosome6	217819686	C	2	..	AJ	0	*	*	3	.A.	JFJ	0	*	*	3	..+1A.	FJJ
+Chromosome6	217819978	T	2	,,	FJ	0	*	*	3	,,g	JJ7	0	*	*	3	,c,	AFJ
+Chromosome6	217825299	A	4	....	JJJJ	2	G.	JJ	1	C	J	0	*	*	2	GG	JJ
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+Chromosome6	217983716	T	0	*	*	2	,.-1A	Js	0	*	*	1	,	s	1	,-1a	F
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+Chromosome6	218246251	T	2	..	JJ	0	*	*	4	...C	\JJJ	0	*	*	3	..C	JJJ
+Chromosome6	218338262	G	1	.-1T	s	0	*	*	1	.	e	1	.-1T	s	0	*	*
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+Chromosome6	220185012	C	0	*	*	1	.	s	0	*	*	1	T	s	2	.T	so
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+Chromosome6	221118008	C	1	,-1a	J	1	.	s	1	.-1A	s	0	*	*	1	,-1a	J
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+Chromosome6	221527623	C	0	*	*	0	*	*	1	.	s	4	.AA.	ssss	1	A	s
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+Chromosome6	221579643	T	1	.-3CAG	F	0	*	*	1	C	7	1	.	J	0	*	*
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+Chromosome6	221932971	C	0	*	*	1	,-4aagt	J	1	,-4aagt	J	0	*	*	1	.	s
+Chromosome6	221984106	G	0	*	*	2	.-5TTCCT.	oF	2	..-5TTCCT	oF	1	.	s	0	*	*
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+Chromosome6	222399401	C	0	*	*	1	.-2TT	J	1	,-1t	J	2	.-2TT.-2TT	JJ	0	*	*
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+Chromosome6	222574262	C	2	,G	JJ	3	,GA	JFJ	2	.$G	;s	6	,A,..G	JsJJJs	0	*	*
+Chromosome6	222581483	A	1	.-8ATGCTATT	;	1	.-8ATGCTATT	;	0	*	*	1	.-8ATGCTATT	;	0	*	*
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+Chromosome6	222585537	G	0	*	*	0	*	*	1	A	k	2	,A	MR	1	.	s
+Chromosome6	222623712	G	2	C.	JJ	0	*	*	1	C	J	0	*	*	1	.	n
+Chromosome6	222637079	C	0	*	*	2	..	ss	0	*	*	1	T	s	2	.a	sJ
+Chromosome6	222706491	G	1	C	J	0	*	*	2	.C	JF	0	*	*	1	.	J
+Chromosome6	222895452	A	0	*	*	1	*	7	0	*	*	1	,	J	2	,,-4gtgc	JJ
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+Chromosome6	222975791	C	0	*	*	1	,+1g	A	0	*	*	2	,+1g,+1g	?F	2	,+1g,+1g	AA
+Chromosome6	222975798	C	0	*	*	1	,	F	0	*	*	2	,-1g,	JJ	2	,-1g,	J7
+Chromosome6	222980805	T	1	,-3tac	;	0	*	*	1	,-3tac	8	3	,-3tac,-3tac,-3tac	;;;	0	*	*
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+Chromosome6	223148055	A	0	*	*	1	.-1G	n	1	.-1G	q	2	.-1G.-1G	qd	0	*	*
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+Chromosome6	223195519	T	0	*	*	2	..	JJ	2	G.	JJ	2	G.	JJ	1	G	F
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+Chromosome6	238189368	T	0	*	*	1	G	s	2	.A	sj	1	.	o	1	A	s
+Chromosome6	238284997	T	2	.-1G.-1G	mm	0	*	*	2	.-1G.-1G	mm	1	,	s	0	*	*
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+Chromosome6	239064847	T	2	C.	JJ	0	*	*	0	*	*	1	C	J	1	.	J
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+Chromosome6	261120331	A	0	*	*	0	*	*	2	G.	FJ	1	.	J	1	G	A
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+Chromosome6	261237594	C	2	a,	JJ	1	.	o	1	a	J	0	*	*	0	*	*
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+Chromosome6	261272801	T	0	*	*	1	.-2CG	J	1	.	J	1	.-2CG	J	1	.-2CG	J
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+Chromosome6	262108057	G	0	*	*	0	*	*	3	..A	sse	2	.T	sJ	1	.	s
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+Chromosome6	262108128	T	0	*	*	0	*	*	3	cc,	JJJ	1	,	J	1	c	J
+Chromosome6	262216726	G	1	.	k	1	,-8ctggagac	8	1	,-8ctggagac	8	0	*	*	0	*	*
+Chromosome6	262420149	C	1	.	J	6	AAAA..	JJJJJA	2	A^].	NA	11	A..AA..AAA.	JJFJJJJJJJA	0	*	*
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+Chromosome6	262446243	C	0	*	*	1	,-1t	J	0	*	*	1	.-1T	s	1	,-1t	J
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+Chromosome6	262970133	A	2	g,	JJ	1	g	J	3	g,g	F<F	2	g.	Js	2	g,	JJ
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+Chromosome6	263329137	G	8	AA......	JJJJJFAJ	2	A.	JF	4	.A..	<J<F	2	..	JJ	9	....AA.A.	JF7JJFJJJ
+Chromosome6	263456066	A	0	*	*	1	,-1t	J	1	,-1t	<	0	*	*	1	,-1t	J
+Chromosome6	263677587	C	1	G	J	5	GGAGG	7JJJJ	0	*	*	2	AG	JJ	0	*	*
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+Chromosome6	264730923	T	2	.-1A.	JJ	0	*	*	1	.-1A	J	2	..	JJ	0	*	*
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+Chromosome6	264833852	A	0	*	*	1	,	J	1	,-6tccagg	5	0	*	*	1	,-6tccagg	5
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+Chromosome6	264915986	C	0	*	*	0	*	*	1	,	J	1	t	J	2	t,	JJ
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+Chromosome6	265097368	G	0	*	*	1	.	J	1	A	7	0	*	*	3	A..	J=5
+Chromosome6	265257185	G	3	t,,	JJJ	1	,	7	2	tt	JJ	0	*	*	0	*	*
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+Chromosome6	265939862	C	0	*	*	1	.-4CATG	>	1	.-4CATG	J	0	*	*	2	.-4CATG.-4CATG	JJ
+Chromosome6	265939888	C	0	*	*	1	.+1T	J	2	.+1T.	JJ	0	*	*	2	.+1T.+1T	JF
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+Chromosome6	265940010	A	0	*	*	1	,	J	2	.g	sJ	0	*	*	2	gg	JJ
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+Chromosome6	266266853	C	2	GG	<J	0	*	*	3	G.G	JJF	1	.	J	2	.G	JJ
+Chromosome6	266267568	T	2	,+1g,+1g	J<	0	*	*	2	,+1g,+1g	JJ	1	,	J	2	,+1g,+1g	J?
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+Chromosome6	266643007	C	0	*	*	3	..A	JJ8	4	..AA	JF88	0	*	*	6	..AAAA	FJ<888
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+Chromosome6	266788622	C	2	.T	JJ	1	.	J	0	*	*	0	*	*	1	T	J
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+Chromosome6	266950061	A	0	*	*	1	,	J	1	g	F	0	*	*	2	g,	7J
+Chromosome6	267156255	G	1	T	R	0	*	*	2	..	9e	3	T..	jss	2	T.	ss
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+Chromosome6	267471425	G	1	a	F	2	,,	JJ	3	aa,	JJ7	2	.a	sJ	2	a,	AJ
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+Chromosome6	267900380	G	1	A	s	0	*	*	0	*	*	2	,$,	>F	3	a,,	AAJ
+Chromosome6	267900416	C	1	A	s	0	*	*	0	*	*	1	,	<	3	a,,	JJJ
+Chromosome6	267907183	G	3	...	AJJ	0	*	*	4	..A.	JJ>F	3	..A	JJJ	1	A	J
+Chromosome6	267907186	C	2	..	JJ	0	*	*	4	..T.	JJ>J	3	..T	JJJ	1	T	J
+Chromosome6	267907247	A	2	C.	<J	0	*	*	3	CC.	AJF	3	C..	Jjj	1	.	J
+Chromosome6	267907250	T	3	AA.	A7A	0	*	*	2	A.	J<	3	A..	Jes	1	.	J
+Chromosome6	267907262	C	2	A.	<F	0	*	*	4	AA..	JJAA	3	AT.	Foe	1	.	7
+Chromosome6	267907270	C	1	.	F	0	*	*	4	...-6TGACAAA	FJ77	3	...-6TGACAA	Fj=	1	.-6TGACAA	8
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+Chromosome6	267909313	G	1	.	J	2	.A	JF	0	*	*	0	*	*	1	A	F
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+Chromosome6	267911239	C	1	T	J	0	*	*	1	.	J	0	*	*	2	.T	JJ
+Chromosome6	267911586	T	0	*	*	1	G	9	2	G,	JJ	0	*	*	2	C.	FJ
+Chromosome6	267911591	T	0	*	*	1	A	J	2	.,	FJ	0	*	*	2	A.	JA
+Chromosome6	267911601	C	0	*	*	1	G	J	2	G,	JJ	0	*	*	2	G.	7A
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+Chromosome6	267913471	G	0	*	*	1	.	J	4	.T..	JJFJ	1	T	J	2	T.	JJ
+Chromosome6	267913507	C	0	*	*	1	.	J	4	.TTT	JJJJ	1	T	J	3	.T.	JJJ
+Chromosome6	267913557	T	0	*	*	1	.	s	4	.CCC	ss\\	1	C	s	3	.C.	\oV
+Chromosome6	267913569	A	0	*	*	1	.	o	4	.CCC	sos5	1	C	R	3	.C.	Mje
+Chromosome6	267916542	G	1	a	J	0	*	*	1	,	J	4	..,A	ssJs	0	*	*
+Chromosome6	267916579	G	1	,-3ggc	7	0	*	*	1	,	J	4	..,.-3GGC	ssJM	0	*	*
+Chromosome6	267916602	G	1	a	J	0	*	*	1	,	J	4	..,A	soJs	0	*	*
+Chromosome6	267916639	T	1	a	J	0	*	*	1	,	J	4	,,,A	JJJs	0	*	*
+Chromosome6	267916663	T	1	c	F	0	*	*	1	,	F	4	,,,c	FFFJ	0	*	*
+Chromosome6	267945694	G	1	.	A	0	*	*	1	A	J	2	.A	JJ	0	*	*
+Chromosome6	267945808	G	1	.	J	0	*	*	1	A	J	2	.A	Fs	0	*	*
+Chromosome6	268045117	A	0	*	*	0	*	*	3	..G	FJJ	1	.	J	1	T	J
+Chromosome6	268045233	C	0	*	*	0	*	*	3	.-1G.-1G.$	JJJ	1	.-1G	J	1	.$	F
+Chromosome6	268494117	T	0	*	*	0	*	*	2	.C	J<	1	.	J	4	.CC.	AJJ7
+Chromosome6	268494226	C	0	*	*	0	*	*	2	.G	JJ	2	..	Jo	4	.GGT	AJJF
+Chromosome6	268494338	T	0	*	*	0	*	*	2	,c	JJ	1	,	F	4	cccc	AJJJ
+Chromosome6	268494365	G	0	*	*	0	*	*	2	,a	JJ	1	,	J	3	aa,	JJF
+Chromosome6	268494438	A	0	*	*	0	*	*	2	,g	JA	1	,	J	4	,gg,	AJFJ
+Chromosome6	268632410	A	0	*	*	1	G	J	0	*	*	2	.G	JJ	1	.	J
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+Chromosome6	268632453	G	0	*	*	1	A	s	0	*	*	2	.A	ss	1	.	R
+Chromosome6	268632476	T	0	*	*	1	C	s	0	*	*	2	.C	ss	1	.	M
+Chromosome6	268729366	A	0	*	*	2	GG	JJ	2	.G	JJ	1	.	J	0	*	*
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+Chromosome6	268729453	G	0	*	*	2	A.	Js	2	.A	JF	1	.	J	0	*	*
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+Chromosome6	280656384	G	1	.-1A	J	0	*	*	0	*	*	2	.-1A.	7J	1	.-1A	J
+Chromosome6	280779331	A	0	*	*	3	.,g	sJJ	3	g,,	JJJ	2	,g	JJ	3	,g,	JAJ
+Chromosome6	280779333	A	0	*	*	3	.g,	sJJ	3	,g,	JJJ	2	,,	JJ	3	g,g	JFJ
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+Chromosome6	280902643	A	1	.	J	0	*	*	0	*	*	2	T.	JJ	1	T	J
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+Chromosome6	281225370	A	1	,	J	2	g,	JJ	0	*	*	0	*	*	1	g	J
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+Chromosome6	281445512	C	3	.GG	FFJ	0	*	*	1	.	J	0	*	*	3	..G	JJJ
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+Chromosome6	281445593	G	3	A..	JFJ	0	*	*	1	A	J	0	*	*	3	AA.	FJJ
+Chromosome6	281445625	T	3	.CC	JJJ	0	*	*	1	.	J	0	*	*	3	..C	J<J
+Chromosome6	281445711	C	3	tt,	JFJ	0	*	*	1	,	J	0	*	*	3	,,t	JJJ
+Chromosome6	281445713	C	3	aa,	<AF	0	*	*	1	t	J	0	*	*	3	aaa	JJJ
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+Chromosome6	282016502	A	0	*	*	0	*	*	1	g	J	2	,g	J7	3	,,,	FJF
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+Chromosome6	282250903	T	1	.	J	0	*	*	0	*	*	2	C.	JJ	1	C	J
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+Chromosome6	282423362	T	1	.	J	0	*	*	2	.C	Fo	0	*	*	2	C.	sJ
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+Chromosome6	282432505	A	2	g,	7A	0	*	*	1	,	J	0	*	*	2	gg	JJ
+Chromosome6	282436482	T	1	,-4tata	;	1	.-4TATA	;	0	*	*	0	*	*	1	.	s
+Chromosome6	282440135	A	0	*	*	2	G,	JJ	0	*	*	1	,	F	1	G	o
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+Chromosome6	282483144	C	3	.tt	oJ<	0	*	*	2	t.	JJ	1	,	J	0	*	*
+Chromosome6	282484404	T	1	G	s	0	*	*	2	.G	JF	0	*	*	1	.	F
+Chromosome6	282753410	T	0	*	*	2	C.	ss	5	C..C.	sVsss	7	.....C.	osssjsJ	2	CC	ss
+Chromosome6	282869555	C	2	.A	JF	0	*	*	0	*	*	1	.	J	1	A	J
+Chromosome6	283286623	C	1	.	o	2	T.	sj	0	*	*	2	T.	ss	0	*	*
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+Chromosome6	283495578	A	1	g	F	0	*	*	4	gg,,	JJJJ	0	*	*	1	,	J
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+Chromosome6	283949410	T	1	C	8	1	.	J	4	CA.C	<<J7	2	C.	8J	5	A.CAC	<J8<8
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+Chromosome6	286267774	T	3	g,,	AJJ	0	*	*	1	,	J	0	*	*	1	g	J
+Chromosome6	286267843	C	3	,,g	FJJ	0	*	*	1	g	J	0	*	*	1	,	J
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+Chromosome6	287305538	T	3	CC.	JJJ	11	CCCC.CCCC.G	JJJJsJJFJJJ	15	CC...CCA.CCC.CC	JFJFJ<JJJJJJJJJ	7	CCCCCCC	FJJJJJJ	10	CCCCC..CCC	FJAJJJJJJJ
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+Chromosome6	287760804	A	1	g	J	0	*	*	2	g,	JF	2	g,	JJ	1	,	J
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+Chromosome6	292446338	C	0	*	*	1	,	J	2	t,	J7	0	*	*	1	t	J
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+Chromosome6	292446353	A	0	*	*	1	,	J	2	g,	JA	0	*	*	1	g	J
+Chromosome6	292671611	C	0	*	*	1	.	s	0	*	*	2	,t	f`	1	T	s
+Chromosome6	292674011	C	1	.	J	0	*	*	0	*	*	2	T.	JJ	2	T.	AA
+Chromosome6	292674145	G	1	a	F	0	*	*	0	*	*	2	a,	JJ	3	.,a	sJ7
+Chromosome6	292676535	T	3	...	JFA	1	A	J	2	.A	FJ	4	.A..	7AFJ	6	A..A..	<FJJAF
+Chromosome6	292824936	C	0	*	*	1	.	J	1	G	J	0	*	*	2	.G	JJ
+Chromosome6	292825022	G	0	*	*	1	.	f	1	A	s	0	*	*	2	.A	o`
+Chromosome6	292922016	C	1	.-2TG	k	0	*	*	0	*	*	1	.-2TG	o	1	.-2TG	s
+Chromosome6	292922057	C	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J
+Chromosome6	293017947	A	0	*	*	1	.-1C	o	2	,-1c,	HJ	0	*	*	1	,-1c	A
+Chromosome6	293018010	A	0	*	*	1	.	s	2	g,	JJ	0	*	*	1	g	J
+Chromosome6	293058556	A	9	.,,,,,,gg	sJJFAJJAJ	8	.,,,,,,,	oJFJJJJF	11	,gg,ggg,,,,	J<JAJJFFF7F	11	..g,gg,g,,,	ssJJJFJJJ7J	14	g.,,,,g,,,,,,,	JsJJJJJJJJFJJJ
+Chromosome6	293067520	A	0	*	*	2	.T	JJ	0	*	*	1	T	J	1	C	F
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+Chromosome6	293067526	C	0	*	*	2	.T	JJ	0	*	*	1	T	J	1	.	<
+Chromosome6	293067534	T	0	*	*	2	.A	JJ	0	*	*	1	A	J	1	.	7
+Chromosome6	293068158	A	1	c	J	0	*	*	2	..	Js	0	*	*	2	.C	JJ
+Chromosome6	293287583	A	1	,-1t	J	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J
+Chromosome6	293288349	C	2	T.	7J	0	*	*	0	*	*	1	t	s	1	.	J
+Chromosome6	293289280	T	0	*	*	2	,c	JF	1	,	<	1	c	F	0	*	*
+Chromosome6	293293304	A	1	,-3tag	H	1	.-3TAG	K	0	*	*	0	*	*	1	,-3tag	6
+Chromosome6	293383038	T	1	C	>	0	*	*	1	.	F	0	*	*	3	..C	JJ?
+Chromosome6	293383041	A	1	T	>	0	*	*	1	C	J	0	*	*	3	CCT	JJ?
+Chromosome6	293383048	C	1	T	J	0	*	*	1	.	J	0	*	*	3	..T	JJF
+Chromosome6	293383053	T	1	C	J	0	*	*	1	.	F	0	*	*	3	..C	JJA
+Chromosome6	293452930	A	0	*	*	1	.-1C	s	1	.-1C	J	1	.	s	0	*	*
+Chromosome6	293640285	T	2	A.	7F	0	*	*	1	.	J	2	A.	JJ	1	A	J
+Chromosome6	293876227	G	1	.	F	0	*	*	0	*	*	2	A.	JJ	3	CC.	JJJ
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+Chromosome6	293876256	A	1	G	J	0	*	*	0	*	*	2	C.	JJ	3	...	JJJ
+Chromosome6	293876308	G	1	.	F	0	*	*	0	*	*	2	..-3CGA	s]	3	...-3CGA	JJ]
+Chromosome6	293876339	C	1	.	F	0	*	*	0	*	*	2	.A	ss	3	..A	JJs
+Chromosome6	293876341	G	1	.	J	0	*	*	0	*	*	2	.A	so	3	..A	JJs
+Chromosome6	293899946	A	2	,g	JJ	0	*	*	3	g,g	JJJ	0	*	*	1	.	s
+Chromosome6	293900038	G	1	,	J	0	*	*	3	,a,	JJJ	0	*	*	1	A	i
+Chromosome6	293903088	G	3	...	JJJ	2	A.	JJ	2	.A	JJ	2	.A	JJ	7	A...A..	A7JJJJJ
+Chromosome6	293903117	C	4	G.A.	JJJA	3	.T.	JAf	2	..	J:	2	A.	JJ	7	.....TT	JFJJJJF
+Chromosome6	293903145	T	4	C.CC	JJJJ	4	CC.C	JJRJ	2	.C	FJ	2	CC	JJ	7	CCC.CCC	JJJJJJJ
+Chromosome6	293903189	C	4	.A..	osss	4	..T.	jJRs	2	T.	6s	2	.A	sJ	7	..TT...	sossssJ
+Chromosome6	293903212	C	4	.,,,	sJJJ	3	t.t	<sJ	2	at	JJ	2	t,	JJ	6	t,,,,,	JJJFJJ
+Chromosome6	293903230	A	4	C,,c	sJJJ	3	c.c	JsJ	2	,c	J7	2	,c	JJ	7	,,,,,,,	JJJFJJJ
+Chromosome6	293903309	C	4	,,tt	JJJJ	2	,t	JJ	2	,t	JF	2	,a	JJ	7	,,,,g,,	JJJJJJJ
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+Chromosome6	294011162	C	1	T	J	0	*	*	0	*	*	2	.T	oJ	1	.	k
+Chromosome6	294012813	T	0	*	*	1	.-1A	D	0	*	*	2	,-1a^P.	s9	1	.	<
+Chromosome6	294013281	C	0	*	*	2	.G	JJ	4	..T.	JJJJ	2	.T	JJ	0	*	*
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+Chromosome6	294013302	G	0	*	*	2	.A	FJ	4	..A.	JoJJ	2	..	JJ	0	*	*
+Chromosome6	294013337	C	0	*	*	3	A..	oso	4	..T.	ssoo	2	..	js	0	*	*
+Chromosome6	294013345	G	0	*	*	3	A..	oss	4	A..A	s[ss	2	..	`s	0	*	*
+Chromosome6	294013350	A	0	*	*	3	CCC	oss	4	C.CC	ssss	2	CT	os	0	*	*
+Chromosome6	294013355	G	0	*	*	3	...	oss	4	.+1T...+1T	ssso	2	.A	os	0	*	*
+Chromosome6	294013399	G	0	*	*	3	..A	oss	4	....	ssss	2	A.	\s	0	*	*
+Chromosome6	294013405	G	0	*	*	3	...	jss	4	.T..	ssss	2	.A	os	0	*	*
+Chromosome6	294013428	C	0	*	*	3	,t,	JFJ	4	,,gg	JJJJ	2	,,	JJ	0	*	*
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+Chromosome6	294015891	C	2	,t	JJ	0	*	*	2	.g	sJ	0	*	*	1	,	7
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+Chromosome6	294015931	G	2	a,	JJ	0	*	*	2	.a	jJ	0	*	*	1	,	F
+Chromosome6	294023182	G	2	..	JJ	2	T.	JJ	0	*	*	0	*	*	1	T	J
+Chromosome6	294023251	C	2	TT	JJ	3	...	9JJ	0	*	*	0	*	*	2	T.	JJ
+Chromosome6	294023317	T	2	cc	JJ	3	.,c	sFJ	0	*	*	0	*	*	2	.,	sJ
+Chromosome6	294024817	C	0	*	*	2	.T	os	0	*	*	1	T	j	1	.	F
+Chromosome6	294090453	A	1	g	F	1	.	s	0	*	*	0	*	*	2	gc	JJ
+Chromosome6	294118396	G	1	.	J	1	A	J	0	*	*	3	.A.	JJJ	0	*	*
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+Chromosome6	294173018	A	1	.	o	0	*	*	0	*	*	2	T.	JJ	1	T	J
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+Chromosome6	294226508	G	3	T.T	<sF	1	.	J	1	T	F	0	*	*	0	*	*
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+Chromosome6	294268946	C	0	*	*	3	G..	JJJ	1	G	J	1	.	`	0	*	*
+Chromosome6	294268956	G	0	*	*	3	..T	sJJ	1	.	s	1	C	e	0	*	*
+Chromosome6	294268974	G	0	*	*	3	.CC	oJJ	1	.	o	1	T	s	0	*	*
+Chromosome6	294349170	G	1	A	<	1	.	J	0	*	*	0	*	*	3	.A.	J7J
+Chromosome6	294349468	C	1	a	J	1	.	s	0	*	*	0	*	*	3	a,,	FJF
+Chromosome6	294349501	C	1	a	J	1	.	s	0	*	*	0	*	*	3	a,,	JJF
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+Chromosome6	294403630	T	2	.C	FF	1	.	F	2	CC	FF	0	*	*	0	*	*
+Chromosome6	294403672	G	2	A.	FJ	1	.	J	2	AA	JJ	0	*	*	0	*	*
+Chromosome6	294438798	A	2	.C	JA	0	*	*	0	*	*	1	C	J	2	..	JJ
+Chromosome6	294438805	C	2	T.	JJ	0	*	*	0	*	*	1	.	<	2	T.	<J
+Chromosome6	294438809	G	2	.-4TTAA.-4TTAA	JJ	0	*	*	0	*	*	1	.-4TTAA	J	2	.-4TTAA.-4TTAA	<J
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+Chromosome6	294752095	T	1	.-2GC	J	2	.-2GC.-2GC	JJ	0	*	*	0	*	*	2	.-2GC.	JJ
+Chromosome6	294752166	T	1	.-3TAG	:	2	.-3TAG.-3TAG	::	0	*	*	0	*	*	2	.-3TAG.-3TAG	7:
+Chromosome6	294752335	C	1	,-2aa	7	2	,-2aa,-2aa	JJ	0	*	*	0	*	*	2	,-2aa,-2aa	JJ
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+Chromosome6	295098235	G	0	*	*	1	.-2TT	J	1	.-1T	<	1	.-2TT	F	1	.-2TT	F
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+Chromosome6	295570709	A	0	*	*	1	,-1t	J	1	,-1t	J	0	*	*	2	,-1t,-1t	JJ
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+Chromosome6	295889482	T	0	*	*	0	*	*	1	.-6TATATA	:	1	.-6TATATA	:	1	.-6TATATA	:
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+Chromosome6	296029841	T	0	*	*	1	,	F	0	*	*	1	.-1C	j	1	,-1c	J
+Chromosome6	296103007	A	0	*	*	1	.	s	2	.G	sq	2	.g	oH	0	*	*
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+Chromosome6	296123634	C	0	*	*	1	,-9atcccgagt	I	0	*	*	1	,-9atcccgagt	I	1	.	J
+Chromosome6	296213389	A	1	,	A	0	*	*	1	.-14TATTGTTGTGTATG	Y	1	,-14tattgttgtgtatg	=	0	*	*
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+Chromosome6	296464118	C	2	,,	A\	0	*	*	0	*	*	2	,A	ss	3	t.T	oss
+Chromosome6	296464122	C	2	,t	sk	0	*	*	0	*	*	2	tT	ss	3	,T.	jos
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+Chromosome6	296684284	A	0	*	*	2	G.	JJ	0	*	*	1	.	J	5	.GGG.	JJJJJ
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+Chromosome6	297206388	G	0	*	*	0	*	*	1	,-3ttt	J	2	,-3ttt,-3ttt	sJ	1	,	J
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+Chromosome6	297346886	C	0	*	*	2	.T	nJ	0	*	*	2	T.	Jj	1	.	[
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+Chromosome6	297502255	T	4	.,,.	aJJj	5	,,.,G	JAVF<	0	*	*	10	,,...g,Gg,	J:oooFJ`JJ	1	g	F
+Chromosome6	297502816	C	1	G	s	0	*	*	4	a..G	AWe7	3	.G.	s>J	0	*	*
+Chromosome6	297503188	C	1	A	s	0	*	*	2	,T	JW	1	.	k	0	*	*
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+Chromosome6	297747794	C	2	T.	JJ	0	*	*	1	.	o	1	T	J	0	*	*
+Chromosome6	297749885	C	1	.	?	0	*	*	1	.-1G	j	0	*	*	1	.-1G	J
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+Chromosome6	297831605	C	1	.	J	2	.G	JJ	0	*	*	1	G	J	0	*	*
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+Chromosome6	297832153	G	1	c	J	2	c,	JJ	0	*	*	1	,	J	0	*	*
+Chromosome6	297832180	A	1	,-1t	A	2	,-1t,	JJ	0	*	*	1	,	J	0	*	*
+Chromosome6	297843935	T	2	c,	JJ	2	,,	FF	1	c	J	0	*	*	0	*	*
+Chromosome6	297854022	T	1	c	J	1	.	s	2	,C	Js	0	*	*	0	*	*
+Chromosome6	297854076	C	1	,-1t	J	1	.	s	3	,.,-1t	JJJ	0	*	*	0	*	*
+Chromosome6	298473366	G	0	*	*	0	*	*	1	A	F	3	...	FsF	2	A.	JA
+Chromosome6	298473438	A	1	.	J	0	*	*	0	*	*	2	CC	sJ	2	C.	JJ
+Chromosome6	298474401	C	1	.	7	0	*	*	2	TT	`s	0	*	*	3	T..	7As
+Chromosome6	298474423	C	1	.	A	0	*	*	2	TT	oa	0	*	*	2	.T	Js
+Chromosome6	298537051	G	0	*	*	2	..	JJ	3	..A	JAJ	5	....A	JJJJJ	0	*	*
+Chromosome6	298579302	A	1	.	a	2	TT	ss	0	*	*	3	.TT	Fss	0	*	*
+Chromosome6	298579357	A	1	.	V	2	Gg	sJ	0	*	*	3	.gg	oJJ	0	*	*
+Chromosome6	298579369	G	1	,-1a	J	1	.-1A	s	0	*	*	3	.,-1a,-1a	VJJ	0	*	*
+Chromosome6	298656953	G	1	,-3aga	:	0	*	*	0	*	*	2	,-3aga,-3aga	::	1	,-3aga	:
+Chromosome6	298657028	T	1	,-1a	A	0	*	*	0	*	*	2	,-1a,-1a	AJ	1	,-1a	J
+Chromosome6	298663066	A	1	.-1G	J	0	*	*	0	*	*	1	.-1G	J	1	.	s
+Chromosome6	298673985	G	0	*	*	1	.-3CTT	s	0	*	*	1	,-3ctt	J	1	,+3ctc	J
+Chromosome6	298904159	C	0	*	*	3	T..	JJJ	1	.	F	1	T	J	0	*	*
+Chromosome6	298904240	T	0	*	*	3	G..	sjo	1	.	s	1	G	s	0	*	*
+Chromosome6	298904285	C	0	*	*	3	ATT	sVR	1	T	o	1	A	s	0	*	*
+Chromosome6	299003089	G	2	.A	JJ	1	A	s	0	*	*	1	,	e	0	*	*
+Chromosome6	299003100	G	2	C.	JJ	1	.	s	0	*	*	1	c	s	0	*	*
+Chromosome6	299003141	T	2	.G	JJ	1	G	s	0	*	*	1	,	o	0	*	*
+Chromosome6	299004708	G	1	t	J	0	*	*	2	t,	JJ	1	.	s	0	*	*
+Chromosome6	299013049	C	0	*	*	4	,...	J<JJ	3	t..	JsJ	1	t	J	0	*	*
+Chromosome6	299013334	C	5	,,,,,	AJJJJ	8	,,,,,,,a	JJJAJ<7A	8	,,,,,,,a	FJJFFAJF	2	,a	JF	14	,,,,,,,,,,,,a,	FJAF7JJJAAJJFA
+Chromosome6	299081943	C	0	*	*	2	.T	os	1	,	s	3	A.,	ssJ	0	*	*
+Chromosome6	299145775	G	0	*	*	0	*	*	1	.	J	1	T	J	2	T.	J7
+Chromosome6	299145780	G	0	*	*	0	*	*	1	.	J	1	A	J	2	A.	JJ
+Chromosome6	299145832	G	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	JJ
+Chromosome6	299145839	T	0	*	*	0	*	*	1	.-4GATC	;	1	.-4GATC	;	2	.-4GATC.-4GATC	;7
+Chromosome6	299528057	A	1	,	J	0	*	*	2	G.	Vs	2	G,	\F	0	*	*
+Chromosome6	299528075	C	1	t	J	0	*	*	2	T,	sF	2	,a	J<	0	*	*
+Chromosome6	299528078	G	1	a	J	0	*	*	2	.t	sJ	2	a,	J<	0	*	*
+Chromosome6	299528081	T	1	a	J	0	*	*	2	.,	oJ	2	a,	J7	0	*	*
+Chromosome6	299528090	T	1	c	J	0	*	*	2	.,	sJ	2	c,	J7	0	*	*
+Chromosome6	299673240	A	0	*	*	1	,	J	0	*	*	2	gg	JJ	4	ggg,	JJJJ
+Chromosome6	300022707	T	1	.	s	2	.+2AA.	oJ	3	,-1a..	JJJ	0	*	*	0	*	*
+Chromosome6	300022816	C	0	*	*	1	T	j	2	t,	JJ	0	*	*	1	,	J
+Chromosome6	300093735	G	0	*	*	1	T	J	0	*	*	2	T.	JJ	2	T.	<F
+Chromosome6	300093757	T	0	*	*	1	.-2TG	<	0	*	*	2	.-2TG.-2TG	<<	2	.-2TG.	=A
+Chromosome6	300093869	T	0	*	*	1	c	J	0	*	*	3	,cC	JJ\	2	ca	J<
+Chromosome6	300093898	T	0	*	*	1	,+1c	F	0	*	*	3	,,+1c.+1C	JJo	2	,+1c,+1c	J<
+Chromosome6	300093939	G	0	*	*	1	c	J	0	*	*	3	,c.	JJs	2	,,	JA
+Chromosome6	300290011	A	1	.	J	0	*	*	2	g.	sJ	0	*	*	1	G	<
+Chromosome6	300290014	G	1	A	J	0	*	*	2	,A	sA	0	*	*	1	.	A
+Chromosome6	300290025	G	1	.-3TTT	J	0	*	*	2	,-3ttt.-3TTT	sJ	0	*	*	1	.-3TTT	J
+Chromosome6	300290067	C	1	T	J	0	*	*	2	,T	sJ	0	*	*	1	.	<
+Chromosome6	300290975	G	0	*	*	1	,-1a	<	2	,-1a,-2aa	J?	1	,-3aaa	J	0	*	*
+Chromosome6	300324332	G	0	*	*	1	.-5ACCGT	S	1	.-5ACCGT	:	1	.-5ACCGT	:	0	*	*
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+Chromosome6	300353627	C	1	t	J	0	*	*	1	,	J	2	T,	sJ	0	*	*
+Chromosome6	300353667	G	1	,	J	0	*	*	1	a	A	2	a,	JJ	0	*	*
+Chromosome6	300384485	T	0	*	*	1	.-1C	G	0	*	*	1	.-1C	G	1	.	J
+Chromosome6	300438107	A	0	*	*	4	.gGG	jJss	1	G	j	0	*	*	1	.	J
+Chromosome6	300438117	C	0	*	*	4	.tTT	HJss	1	T	s	0	*	*	1	.	F
+Chromosome6	300438120	G	0	*	*	4	aAA,	Joo:	1	A	o	0	*	*	1	.	A
+Chromosome6	300438124	T	0	*	*	4	cCC,	JssA	1	C	s	0	*	*	1	.	F
+Chromosome6	300438227	C	0	*	*	4	a,aa	CF@@	1	a	J	0	*	*	1	,	J
+Chromosome6	300489133	G	0	*	*	1	.	s	0	*	*	2	.C	sA	1	C	F
+Chromosome6	300489136	T	0	*	*	1	.	s	0	*	*	2	.C	sJ	1	C	J
+Chromosome6	300489157	G	0	*	*	1	.-9ACGATCGAC	I	0	*	*	2	.-9ACGATCGAC.	^j	1	.	J
+Chromosome6	300489186	T	0	*	*	1	C	s	0	*	*	2	C.	J`	1	.	J
+Chromosome6	300489192	G	0	*	*	1	A	n	0	*	*	2	A.	Jj	1	.	F
+Chromosome6	300496498	C	3	.T.	JJJ	0	*	*	1	T	J	0	*	*	2	.T	JJ
+Chromosome6	300496500	G	3	T.T	JJJ	0	*	*	1	.	J	0	*	*	2	T.	JJ
+Chromosome6	300496511	A	3	.-1T..-1T	JJJ	0	*	*	1	.	J	0	*	*	2	.-1T.	JJ
+Chromosome6	300496561	T	3	.-1A..-1A	FJJ	0	*	*	1	.	J	0	*	*	2	.-1A.	JJ
+Chromosome6	300496683	T	3	c,c	JJJ	0	*	*	1	,	J	0	*	*	2	c,	JJ
+Chromosome6	300616419	A	1	.-5GCTCG	O	1	.-5GCTCG	8	1	.	o	0	*	*	0	*	*
+Chromosome6	300731683	A	2	GG	JJ	1	.	A	4	G...	JAAA	2	G.	JA	3	GG.	JFA
+Chromosome6	300731764	C	0	*	*	1	.	s	4	T...	FJJJ	2	T.	JF	1	T	J
+Chromosome6	300731822	G	0	*	*	1	.	s	5	....a	osskJ	3	..a	ssJ	3	.a,	fFA
+Chromosome6	300748865	G	1	.	J	0	*	*	0	*	*	2	A,	FJ	1	A	J
+Chromosome6	300912586	A	1	,-1t	7	0	*	*	1	,	F	1	,-1t	F	0	*	*
+Chromosome6	300938902	A	1	.-6AGTCAC	I	1	,+1c	F	0	*	*	1	.-6AGTCAC	5	1	.-6AGTCAC	5
+Chromosome6	301195322	C	2	..	Js	0	*	*	2	.T	JJ	0	*	*	1	T	J
+Chromosome6	301195334	C	2	..	Js	0	*	*	2	TA	J]	0	*	*	1	A	J
+Chromosome6	301270456	T	2	,c	JJ	0	*	*	2	,c	JF	1	,	J	2	,c	JJ
+Chromosome6	301292130	A	1	,	J	3	,,g	JJA	0	*	*	1	g	J	0	*	*
+Chromosome6	301482242	C	3	,-4ctct,-4ctct,-4ctct	989	1	,-4ctct	9	1	,-4ctct	9	0	*	*	0	*	*
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+Chromosome6	301509809	G	0	*	*	1	t	J	0	*	*	2	,T	Js	1	,	A
+Chromosome6	301509839	T	0	*	*	1	c	;	0	*	*	2	,C	Js	1	,	J
+Chromosome6	301511360	G	1	,	7	0	*	*	2	,A	Js	1	t	J	0	*	*
+Chromosome6	301519008	T	1	.	J	2	,C	sJ	0	*	*	0	*	*	1	C	J
+Chromosome6	301519029	T	1	.	J	2	,G	sJ	0	*	*	1	g	J	1	A	J
+Chromosome6	301594924	T	0	*	*	1	,-1a	E	0	*	*	1	,-1a	E	2	,,	JJ
+Chromosome6	301739529	C	2	.T	AJ	0	*	*	2	TT	JF	0	*	*	1	.	J
+Chromosome6	301739776	A	1	g	J	0	*	*	2	,g	F<	0	*	*	1	,	J
+Chromosome6	301739882	G	2	a,	F7	0	*	*	1	a	J	0	*	*	1	,	J
+Chromosome6	301739918	G	2	a,	JJ	0	*	*	1	a	J	0	*	*	1	,	J
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+Chromosome6	301816364	A	1	g	<	1	,	J	0	*	*	2	.g	k<	0	*	*
+Chromosome6	301816365	C	1	,	<	1	t	J	0	*	*	2	T,	j<	0	*	*
+Chromosome6	301816366	T	1	,-1g	<	1	,	J	0	*	*	2	.,-1g	a<	0	*	*
+Chromosome6	301816433	G	1	a	J	1	,	J	0	*	*	2	a,	JF	0	*	*
+Chromosome6	302115985	G	0	*	*	0	*	*	3	a,,	JFJ	3	,A,	FsJ	1	,	F
+Chromosome6	302115989	G	0	*	*	0	*	*	3	t,,	JJJ	3	,$T,	@sJ	1	,	J
+Chromosome6	302115990	T	0	*	*	0	*	*	3	a,,	JAJ	2	A,	sJ	1	,	J
+Chromosome6	302116003	G	0	*	*	0	*	*	3	a,,	JFJ	2	a,	JJ	1	,	F
+Chromosome6	302279432	G	3	CC.	B87	0	*	*	3	..T	9F7	0	*	*	1	.	o
+Chromosome6	302303538	A	0	*	*	0	*	*	1	.	J	1	G	J	2	G.	JJ
+Chromosome6	302357957	T	2	..	FJ	0	*	*	0	*	*	2	.C	JJ	1	C	J
+Chromosome6	302357976	A	2	..	7J	0	*	*	0	*	*	2	.G	JJ	1	G	J
+Chromosome6	302368498	A	0	*	*	1	.	s	1	G	J	2	.G	JJ	0	*	*
+Chromosome6	302368595	G	0	*	*	1	,	J	1	,-3cta	F	2	.-3CTA,	sJ	0	*	*
+Chromosome6	302552298	T	1	,-1g	F	0	*	*	2	,-1g,-1g	FF	2	,-1g,-1g	FF	1	,-1g	F
+Chromosome6	302696172	T	1	,-1c	J	1	,-1c	F	0	*	*	1	,-1c	J	4	,-1c,-1c,-1c,-1c	JJJJ
+Chromosome6	302846809	G	2	..	JJ	0	*	*	1	.-2AA	J	0	*	*	1	.-2AA	F
+Chromosome6	303170879	T	0	*	*	1	,	J	0	*	*	3	a,,	7JJ	1	a	J
+Chromosome6	303170930	C	0	*	*	1	t	J	0	*	*	3	,tt	JFJ	1	,	J
+Chromosome6	303376233	C	0	*	*	0	*	*	3	.A,	JJJ	1	A	s	1	.	J
+Chromosome6	303376319	A	0	*	*	0	*	*	3	T.t	JJJ	1	T	s	1	.	J
+Chromosome6	303376745	G	1	.-2CT	A	1	.-2CT	J	1	.	J	0	*	*	0	*	*
+Chromosome6	303376955	T	1	,-1a	F	1	,-1a	F	1	,	J	0	*	*	0	*	*
+Chromosome6	303425124	G	0	*	*	2	.,-8tcgtcgac	JA	0	*	*	1	.-8TCGTCGAC	`	1	,-8tcgtcgac	J
+Chromosome6	303449447	A	2	,,	<A	3	t,,	J<J	0	*	*	0	*	*	1	t	J
+Chromosome6	303551272	A	1	.-3TAC	;	0	*	*	1	.-3TAC	;	0	*	*	1	.-3TAC	;
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+Chromosome6	303553847	T	0	*	*	0	*	*	1	^Z.	A	1	C	J	2	C.$	JE
+Chromosome6	303553912	C	0	*	*	0	*	*	1	.-1A	F	2	.,-1a	sF	1	.	s
+Chromosome6	303553932	T	0	*	*	0	*	*	1	.	s	2	aa	JJ	2	a,	J<
+Chromosome6	303553952	A	0	*	*	0	*	*	1	.	s	2	cc	JJ	2	c,	FJ
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+Chromosome6	303556493	C	2	T.	JJ	2	.T	JJ	0	*	*	1	T	J	0	*	*
+Chromosome6	303556524	C	2	T.	FJ	2	..	JJ	0	*	*	1	T	F	0	*	*
+Chromosome6	303556531	G	2	A.	JJ	2	..	JJ	0	*	*	1	A	J	0	*	*
+Chromosome6	303556537	T	2	C.	FJ	2	.C	JJ	0	*	*	1	.	J	0	*	*
+Chromosome6	303556550	C	2	T.	JJ	2	..	JJ	0	*	*	1	T	J	0	*	*
+Chromosome6	303602868	T	1	.	J	2	.C	JJ	3	C..	JJJ	0	*	*	3	..C	JJJ
+Chromosome6	303711446	G	1	T	J	0	*	*	1	.	J	2	T.	JF	0	*	*
+Chromosome6	303711460	T	1	C	J	0	*	*	1	.	J	2	C.	JJ	0	*	*
+Chromosome6	303711595	A	1	c	J	0	*	*	1	,	J	2	,c	JJ	0	*	*
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+Chromosome6	303711610	T	1	c	J	0	*	*	1	,	J	2	,c	JJ	0	*	*
+Chromosome6	303847025	G	0	*	*	2	,,	JJ	2	c,	JJ	3	.,c	eJJ	7	c,,,,,,	JJJJJJJ
+Chromosome6	303974664	C	0	*	*	1	T	J	2	.T	JJ	0	*	*	2	T.	JJ
+Chromosome6	304082504	A	0	*	*	0	*	*	1	C	e	2	C.	so	1	.	o
+Chromosome6	304082513	T	0	*	*	0	*	*	1	c	J	2	c,	JJ	1	,	J
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+Chromosome6	304109171	C	0	*	*	2	g,	JJ	1	,	A	0	*	*	1	g	F
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+Chromosome6	304145923	A	1	g	9	0	*	*	0	*	*	1	,	J	2	,g	F9
+Chromosome6	304206519	A	2	TC	JJ	1	T	J	0	*	*	0	*	*	2	TC	AF
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+Chromosome6	304206562	C	2	A.	JJ	1	A	J	0	*	*	0	*	*	2	..	JJ
+Chromosome6	304206575	G	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5<
+Chromosome6	304206576	G	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5F
+Chromosome6	304206579	A	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5A
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+Chromosome6	304206590	T	2	A.	JJ	1	A	J	0	*	*	0	*	*	2	A.	FJ
+Chromosome6	304206594	C	2	T.	JJ	1	T	<	0	*	*	0	*	*	2	T.	FA
+Chromosome6	304206606	A	2	T.	JJ	1	T	J	0	*	*	0	*	*	2	T.	JA
+Chromosome6	304206804	T	2	a,	JF	1	,	J	0	*	*	0	*	*	2	aa	FF
+Chromosome6	304206809	C	2	,-3agt,	JF	1	,	J	0	*	*	0	*	*	2	,-3agtt	JF
+Chromosome6	304206823	T	2	,,-1a	JJ	1	,-1a	F	0	*	*	0	*	*	2	,,-1a	F:
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+Chromosome6	304263102	C	4	,,,,	JJJF	0	*	*	2	t,	<J	0	*	*	6	.a,,,,	sFJJ<<
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+Chromosome6	304263121	T	2	gg	JJ	0	*	*	1	,	J	0	*	*	6	.,,,g,	sFJJJJ
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+Chromosome6	304263150	G	3	,,,	JJJ	0	*	*	1	t	J	0	*	*	6	.$,,t,,	nJJJF7
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+Chromosome6	324097623	C	0	*	*	1	.	J	1	A	J	0	*	*	4	..A.	JJJJ
+Chromosome6	324103496	C	0	*	*	1	T	F	1	.	J	2	.G	Je	0	*	*
+Chromosome6	324103584	G	0	*	*	2	..	7J	1	T	F	2	T.	Js	0	*	*
+Chromosome6	324104964	T	0	*	*	1	.-5TACAC	<	1	.-5TACAC	=	0	*	*	1	.-5TACAC	=
+Chromosome6	324123179	T	0	*	*	0	*	*	2	,g	FJ	1	g	J	2	,,	JJ
+Chromosome6	324346411	C	0	*	*	0	*	*	2	T.	ss	1	.	s	2	.T	ss
+Chromosome6	324430836	G	3	,CC	sJJ	0	*	*	1	C	J	1	.	J	0	*	*
+Chromosome6	324430885	C	3	,.-1T.-1T	sFJ	0	*	*	1	.-1T	J	1	.	J	0	*	*
+Chromosome6	324430902	T	3	,CC	s7J	0	*	*	1	C	J	1	.	J	0	*	*
+Chromosome6	324430912	T	3	,CC	sJJ	0	*	*	1	C	J	1	.	F	0	*	*
+Chromosome6	324430918	C	3	t.-1T.-1T	sJJ	0	*	*	1	.	J	1	T	F	0	*	*
+Chromosome6	324556391	G	0	*	*	1	.	o	1	A	J	4	..AA	JJsV	0	*	*
+Chromosome6	324556401	A	0	*	*	1	.	s	1	G	J	4	..GG	JJss	0	*	*
+Chromosome6	324632081	G	0	*	*	1	A	J	1	.	J	2	.A	JJ	0	*	*
+Chromosome6	324632228	G	0	*	*	1	a	J	1	,	J	2	,a	JJ	0	*	*
+Chromosome6	324636553	G	0	*	*	0	*	*	1	.-2AT	J	1	.	J	2	..-2AT	JJ
+Chromosome6	324636616	A	0	*	*	0	*	*	1	G	V	1	.	s	2	.G	ss
+Chromosome6	324653957	T	5	,aa,,	JJJF<	5	,,,,,	FJAJJ	2	aa	7J	8	,,,,a,,,	J<<<AJAA	7	,a,,,aa	JJJ7JJJ
+Chromosome6	324654298	G	4	a,,,	JJJJ	0	*	*	0	*	*	1	.	s	1	a	F
+Chromosome6	324860329	T	0	*	*	0	*	*	2	C.	FJ	1	.	J	2	CC	JJ
+Chromosome6	324860332	G	0	*	*	0	*	*	2	C.	JJ	1	.	J	2	CC	JJ
+Chromosome6	324862737	A	1	C	J	2	T.	FJ	2	.C	JF	2	.C	JJ	2	..	JJ
+Chromosome6	324862799	A	1	.	J	2	.G	JJ	2	G.	J7	2	G.	FJ	2	.G	JA
+Chromosome6	324888414	A	0	*	*	2	.,	Ja	0	*	*	2	,G	H7	1	G	A
+Chromosome6	324951331	T	0	*	*	0	*	*	1	.	s	1	C	J	4	..C.	JJFJ
+Chromosome6	324951416	C	0	*	*	0	*	*	1	,	J	1	t	J	4	g,,,	JJFJ
+Chromosome6	324953309	C	5	....T	J7JJJ	0	*	*	8	......TT	AJJJJAF<	2	T.	JJ	6	......	J<JJJJ
+Chromosome6	324953554	T	3	,c,	JJ<	0	*	*	7	,,,,c,,	JJAJJJF	2	,,	AF	4	,c,,	J7FF
+Chromosome6	325124671	A	0	*	*	1	.	J	2	G.	JJ	1	G	s	0	*	*
+Chromosome6	325127737	A	0	*	*	2	.+1T.	bJ	2	.,	JJ	3	..g	JJJ	0	*	*
+Chromosome6	325150828	A	0	*	*	0	*	*	1	C	J	2	..	JJ	2	T.	JJ
+Chromosome6	325151005	A	0	*	*	0	*	*	1	g	J	1	,	J	3	.gg	WJ<
+Chromosome6	325178023	T	2	.C	sJ	1	C	J	0	*	*	2	.C	JA	1	.$	A
+Chromosome6	325325432	C	2	.+7GAGGTAT.+7GAGGTAT	GJ	0	*	*	0	*	*	2	.+7GAGGTAT.+7GAGGTAT	HC	1	.+7GAGGTAT	s
+Chromosome6	325325444	T	2	.+4CTGC.+4CTGC	77	0	*	*	0	*	*	2	.+4CTGC.+4CTGC	77	2	.+4CTGC,+4ctgc	77
+Chromosome6	325350609	G	2	..	<J	0	*	*	1	A	F	0	*	*	2	.A	JJ
+Chromosome6	325601817	A	0	*	*	1	.	J	0	*	*	1	G	J	2	G.	JJ
+Chromosome6	325660546	C	0	*	*	1	,-1t	J	1	,-1t	J	0	*	*	1	,-1t	J
+Chromosome6	325732633	G	0	*	*	1	T	J	2	T.	JJ	0	*	*	1	.	J
+Chromosome6	325732771	G	0	*	*	1	T	s	2	t,	JJ	0	*	*	1	,	J
+Chromosome6	325757594	C	1	,	9	0	*	*	1	,-4tcga	:	1	,-4tcga	5	0	*	*
+Chromosome6	325828243	T	1	C	J	1	.	F	0	*	*	2	GC	A7	2	C.	FJ
+Chromosome6	325828440	C	1	t	J	1	,	J	0	*	*	2	t,	FJ	2	t,	FJ
+Chromosome6	325828534	C	1	t	7	1	,	J	0	*	*	2	t,	;A	2	t,	7J
+Chromosome6	325950772	C	0	*	*	0	*	*	1	G	M	2	G,	es	1	,	J
+Chromosome6	325969297	T	1	,	J	0	*	*	1	*	5	2	*,	5J	0	*	*
+Chromosome6	325985574	T	0	*	*	1	,	J	1	,-4ttgc	5	1	,-4ttgc	5	0	*	*
+Chromosome6	326003306	G	1	A	j	1	.	J	0	*	*	2	a.	Jo	0	*	*
+Chromosome6	326195981	G	0	*	*	0	*	*	2	t,	JJ	2	,,	7J	1	t	J
+Chromosome6	326293749	A	2	T.	AJ	1	T	A	0	*	*	0	*	*	1	.	J
+Chromosome6	326293770	T	2	C.	7F	1	C	F	0	*	*	0	*	*	1	.	J
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+Chromosome6	326293833	G	2	.A	FJ	1	A	<	0	*	*	0	*	*	1	.	J
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+Chromosome6	326363969	G	2	T.	sJ	1	.	A	0	*	*	1	T	J	0	*	*
+Chromosome6	326363996	G	2	.A	sJ	1	.	J	0	*	*	1	A	s	0	*	*
+Chromosome6	326364050	G	2	A,	JJ	1	a	J	0	*	*	1	.	s	0	*	*
+Chromosome6	326419318	A	0	*	*	1	.-1T	J	2	..-1T	AJ	0	*	*	2	.+1T,+1t	JJ
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+Chromosome6	326419437	T	0	*	*	1	a	J	2	,a	<J	0	*	*	1	,	J
+Chromosome6	326622262	T	1	.	<	0	*	*	0	*	*	1	.-2GC	J	2	.-2GC*	JJ
+Chromosome6	326639008	G	1	.	s	0	*	*	1	T	J	2	,T	Fs	0	*	*
+Chromosome6	326639042	T	2	..	so	0	*	*	1	G	J	3	,G.	JsJ	0	*	*
+Chromosome6	326639048	C	3	..,	sRF	0	*	*	1	T	J	3	,T.	FsJ	0	*	*
+Chromosome6	326639056	A	3	.gg	sJJ	0	*	*	1	G	J	3	,GG	Jss	1	,	A
+Chromosome6	326639058	C	3	.,,	sFJ	0	*	*	1	A	J	3	,A.	Jss	0	*	*
+Chromosome6	326639101	A	3	.gg	sJJ	0	*	*	0	*	*	3	,c.+6TGCCGC	JJW	1	,	7
+Chromosome6	326639102	C	3	.tt	sJJ	0	*	*	0	*	*	2	,a	JJ	1	,	A
+Chromosome6	326639103	A	3	.gg	sJJ	0	*	*	0	*	*	3	,tG	JJ5	1	,	A
+Chromosome6	326639111	G	3	.aa	sJJ	0	*	*	0	*	*	3	aa*	JJs	1	a	7
+Chromosome6	326639120	T	3	.cc	sJJ	0	*	*	0	*	*	2	cC	Js	1	,	J
+Chromosome6	326639143	A	3	tt,	JJJ	0	*	*	1	,	J	2	,T	Js	0	*	*
+Chromosome6	326639511	C	2	.T	JJ	0	*	*	1	T	J	2	..-6AAGAGT	JH	0	*	*
+Chromosome6	326639513	A	2	.G	JF	0	*	*	1	.	J	2	.*	JF	0	*	*
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+Chromosome6	326639570	G	2	A,	`J	1	,	J	0	*	*	2	A,	oJ	0	*	*
+Chromosome6	326639610	A	3	,,c	JJJ	1	,	J	1	c	J	3	,,C	JJJ	0	*	*
+Chromosome6	326639617	A	3	,,g	JJJ	1	,	J	1	g	J	3	,,G	FJF	0	*	*
+Chromosome6	326639626	A	3	g,,	JJJ	1	g	J	1	,	J	3	,g.	JJj	0	*	*
+Chromosome6	326639632	T	3	,,g	JJJ	1	,	J	1	g	J	3	g,G	JJe	0	*	*
+Chromosome6	326639640	G	3	,,,-1c	JJJ	1	,	J	1	,-1c	J	3	,,.-1C	JJs	0	*	*
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+Chromosome6	326639644	T	3	,gg	JJG	1	,	F	1	g	G	3	g,G	HJk	0	*	*
+Chromosome6	326639665	G	3	,,a	JJJ	1	,	F	0	*	*	3	,,A	JJR	0	*	*
+Chromosome6	326640356	T	1	A	F	0	*	*	0	*	*	1	.	F	2	A.	JJ
+Chromosome6	326640372	A	1	G	A	0	*	*	0	*	*	1	.	F	2	G.	J<
+Chromosome6	326640466	G	1	a	J	0	*	*	0	*	*	1	.	f	2	.a	VF
+Chromosome6	326640467	G	1	a	J	0	*	*	0	*	*	1	.	k	2	,a	>J
+Chromosome6	326640480	G	1	,	J	0	*	*	0	*	*	1	A	\	2	a,	JJ
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+Chromosome6	326640505	C	1	,	F	0	*	*	0	*	*	1	*	F	2	*,	FJ
+Chromosome6	326640506	G	1	a	J	0	*	*	0	*	*	1	,	F	2	,a	FJ
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+Chromosome6	326640554	T	1	g	J	0	*	*	0	*	*	1	,	A	2	,g	FJ
+Chromosome6	326836778	G	0	*	*	1	.-1A	o	0	*	*	1	.	s	1	.-1A	s
+Chromosome6	326841480	A	1	.	F	2	T.	sF	0	*	*	1	T	e	0	*	*
+Chromosome6	326841483	T	1	.	J	2	G.	sJ	0	*	*	1	G	a	0	*	*
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+Chromosome6	327056837	C	2	.A	FJ	0	*	*	0	*	*	1	A	J	2	..	JJ
+Chromosome6	327103247	T	6	.....C	JJJ<JJ	5	....C	FJJJJ	6	C.C.CC	JFJJJJ	2	..	JJ	6	C..CC.	JJJ7JJ
+Chromosome6	327103250	T	6	..CC..	AJAAFJ	5	.CC..	AJJAJ	7	.C.....	JA<FAJJ	2	..	JJ	6	..C..C	JJJ7JF
+Chromosome6	327172455	C	0	*	*	1	.-7ACCCTAA	Q	2	,-7accctaa.	Uo	0	*	*	3	...	sss
+Chromosome6	327217144	C	3	.+2AT..	FJJ	0	*	*	3	.+2AT.+2AT.	JJJ	0	*	*	3	...	FFJ
+Chromosome6	327217526	C	2	,a	JF	1	.	o	3	aa,	JJJ	6	,aa,,,	JJJJJJ	6	a,aa,,	FJ<FJA
+Chromosome6	327338090	C	1	,-5aaaaa	F	0	*	*	0	*	*	1	,-5aaaaa	J	1	,	J
+Chromosome6	327621190	T	1	,-1a	J	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J
+Chromosome6	327629090	T	3	.CC	FJ<	2	..	JJ	1	C	J	0	*	*	0	*	*
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+Chromosome6	327716468	C	0	*	*	2	T,	JJ	1	.	J	0	*	*	1	a	J
+Chromosome6	327716693	T	0	*	*	1	,-3tcc	;	1	,	J	0	*	*	1	,-3tcc	;
+Chromosome6	328009014	G	0	*	*	2	..	JJ	0	*	*	3	A..	JJJ	1	A	J
+Chromosome6	328105015	C	1	A	F	1	.	J	0	*	*	0	*	*	6	..A.A.	FFAJJJ
+Chromosome6	328137060	A	2	C.	=F	0	*	*	1	.	F	0	*	*	1	C	=
+Chromosome6	328137119	C	2	A.	J7	0	*	*	1	.	J	0	*	*	1	A	J
+Chromosome6	328137342	C	2	,t	AJ	0	*	*	1	,	J	0	*	*	1	t	J
+Chromosome6	328335218	T	0	*	*	1	.	7	2	.A	FJ	2	.A	`J	3	.AA	AJJ
+Chromosome6	328353632	C	0	*	*	0	*	*	1	,	J	1	g	J	2	g,	JJ
+Chromosome6	328353704	C	0	*	*	0	*	*	1	,	J	1	t	J	2	t,	JJ
+Chromosome6	328373415	C	0	*	*	1	.	s	0	*	*	1	,-4actt	8	2	,,-4actt	J8
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+Chromosome6	328452897	G	0	*	*	4	,,a,	JFJJ	1	,	F	0	*	*	1	a	A
+Chromosome6	328457467	C	2	T.	<J	0	*	*	3	...	JJF	0	*	*	2	.T	JJ
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+Chromosome6	328490182	T	0	*	*	3	CC.	kss	2	.C	ss	0	*	*	1	C	s
+Chromosome6	328491986	C	0	*	*	2	T.	J7	1	T	J	2	.T	JJ	0	*	*
+Chromosome6	328492093	G	0	*	*	2	C,	VJ	1	.	\	2	,c	JJ	0	*	*
+Chromosome6	328634771	G	0	*	*	1	a	J	2	,,	JJ	0	*	*	2	at	JJ
+Chromosome6	328711433	T	2	.C	FJ	3	..C	JJJ	5	CCC..	JJJ<A	3	..C	JJJ	5	C.C..	AJ7JJ
+Chromosome6	329244222	T	1	.	s	0	*	*	2	.C	js	0	*	*	2	.C	so
+Chromosome6	329275820	G	0	*	*	1	A	J	0	*	*	2	A.	Js	1	.	J
+Chromosome6	329275881	A	0	*	*	1	G	R	0	*	*	2	G.	Js	1	.	J
+Chromosome6	329443167	T	1	,-1g	J	1	,-1g	J	0	*	*	1	,-1g	J	1	,-1g	J
+Chromosome6	330065156	A	0	*	*	0	*	*	4	GGG.	ssss	2	GG	ss	3	GG.	ssV
+Chromosome6	330065197	C	0	*	*	0	*	*	4	,,,,	JJJJ	2	t,	JJ	3	.t,	oJJ
+Chromosome6	330146508	T	0	*	*	0	*	*	1	.-1A	J	1	.-1A	J	2	.-1A,	JA
+Chromosome6	330148047	C	0	*	*	1	.-4CAAG	5	0	*	*	1	.-4CAAG	5	1	.-4CAAG	5
+Chromosome6	330157521	C	2	.A	JJ	0	*	*	0	*	*	1	A	J	1	.	J
+Chromosome6	330157565	A	2	.C	JJ	0	*	*	0	*	*	1	C	J	1	.	J
+Chromosome6	330157644	C	2	t,	JA	0	*	*	0	*	*	1	,	F	1	t	J
+Chromosome6	330170206	A	1	.	J	0	*	*	3	C..	JJJ	0	*	*	4	..C.	JJJJ
+Chromosome6	330170269	A	1	.	s	0	*	*	3	..T	kss	0	*	*	4	.T..	soso
+Chromosome6	330170278	G	1	.	s	0	*	*	3	..T	Wss	0	*	*	4	.T.T	osss
+Chromosome6	330170302	A	1	.	s	0	*	*	3	..C	\ss	0	*	*	4	.C..	sVss
+Chromosome6	330170356	C	1	,	J	0	*	*	3	,,t	JJJ	0	*	*	4	t,,,	JJJJ
+Chromosome6	330384311	T	0	*	*	1	G	J	1	.	F	0	*	*	2	.G	JJ
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+Chromosome6	330594325	A	0	*	*	0	*	*	1	.	J	1	T	J	1	.-1T	J
+Chromosome6	330612901	G	1	,	J	1	a	J	0	*	*	0	*	*	2	,c	<J
+Chromosome6	330719831	C	0	*	*	0	*	*	1	,	F	1	t	G	3	,,t	JJG
+Chromosome6	330941444	A	0	*	*	1	G	s	1	.	A	0	*	*	2	.G	JJ
+Chromosome6	330941467	C	0	*	*	1	,-3ggg	J	1	.	o	0	*	*	2	.,-3ggg	sJ
+Chromosome6	330976374	G	0	*	*	0	*	*	1	A	J	2	A.	JJ	2	A.	JJ
+Chromosome6	330976393	C	0	*	*	0	*	*	2	T.	ss	2	T.	ss	2	T.	Ws
+Chromosome6	331044373	A	0	*	*	1	,-1t	J	1	,	J	1	.-1T	s	0	*	*
+Chromosome6	331122875	A	3	,,g	JFJ	1	t	J	5	,,t,,	JJJJJ	6	,,,,,,	JJJJJJ	4	,tg,	JJJJ
+Chromosome6	331259115	C	0	*	*	0	*	*	2	t,	JJ	1	,	J	1	t	J
+Chromosome6	331337214	G	1	.-3CGC	<	1	,-3cgc	J	1	.-3CGC	J	0	*	*	0	*	*
+Chromosome6	331337568	C	0	*	*	0	*	*	1	,-16agagagaggttgtgcg	<	1	,	H	1	,-2ag	J
+Chromosome6	331415541	G	2	,t	7J	1	,	J	0	*	*	1	t	F	0	*	*
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+Chromosome6	331570531	G	2	T.	AJ	2	T.	Js	1	.	s	0	*	*	1	T	J
+Chromosome6	331810294	C	0	*	*	2	G.	JJ	1	G	J	0	*	*	3	...	JJs
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+Chromosome7	60284261	G	1	.-5GAGAA	6	1	.-5GAGAA	Q	0	*	*	1	.	o	0	*	*
+Chromosome7	60285770	G	2	t,	JJ	3	.Tt	ssJ	0	*	*	0	*	*	2	,,	FJ
+Chromosome7	60285778	A	2	g,	>7	2	.G	RF	0	*	*	0	*	*	1	,	J
+Chromosome7	60285829	T	2	c,	FF	3	cc,	JJJ	0	*	*	0	*	*	1	,	J
+Chromosome7	60285832	T	2	a,	FJ	3	aa,	JJJ	0	*	*	0	*	*	1	,	J
+Chromosome7	60311329	T	1	,	J	0	*	*	2	,c	JJ	0	*	*	1	c	J
+Chromosome7	60398289	G	2	CA	AJ	0	*	*	0	*	*	2	A.	FJ	1	a	J
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+Chromosome7	60487432	A	4	...G	JJFF	1	.	J	1	G	J	0	*	*	3	..G	JJJ
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+Chromosome7	60487440	C	3	..A	FFJ	1	.	J	1	A	J	0	*	*	3	..A	AJJ
+Chromosome7	60487459	G	4	.$..T	EFJA	1	.	J	1	T	J	0	*	*	3	..T	JJJ
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+Chromosome7	60558843	C	2	T.	JJ	0	*	*	2	..	JJ	0	*	*	1	T	J
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+Chromosome7	60715229	T	0	*	*	0	*	*	2	.C	JF	1	.	J	1	C	A
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+Chromosome7	60932252	C	0	*	*	1	,+1g	H	0	*	*	2	,t	JJ	2	.+1G,+1g	HH
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+Chromosome7	60934898	A	0	*	*	1	.	o	1	.-7TCTAGAG	9	0	*	*	1	.-7TCTAGAG	9
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+Chromosome7	60935022	T	0	*	*	1	,	J	2	.c	sJ	0	*	*	1	c	J
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+Chromosome7	60959405	A	1	,	J	0	*	*	1	g	J	3	,gg	JJJ	0	*	*
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+Chromosome7	61187439	A	2	gg	JJ	0	*	*	2	g.	A^	1	.	<	0	*	*
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+Chromosome7	61211642	G	0	*	*	0	*	*	2	.C	JJ	1	.	J	3	CAA	JJF
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+Chromosome7	61217709	A	1	,-4cgcg	J	1	.-4CGCG	R	0	*	*	0	*	*	1	.-4CGCG	o
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+Chromosome7	62064146	C	0	*	*	1	.-1A	F	0	*	*	1	.-1A	F	1	.-1A	F
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+Chromosome7	62221283	T	3	,ac	FJ7	5	,,a,,	FJJJ<	1	,	J	7	ac,,,ca	JJJJE7J	2	cg	AJ
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+Chromosome7	65660973	C	1	T	J	2	.T	JJ	1	.	F	0	*	*	0	*	*
+Chromosome7	65671610	T	3	,-4ccgg,-4ccgg,-4ccgg	JFJ	0	*	*	0	*	*	1	,-4ccgg	<	1	,	A
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+Chromosome7	147124418	T	1	,	J	2	,c	JJ	1	c	J	0	*	*	3	,c,	JJJ
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+Chromosome7	147124425	C	1	,	J	2	,,-1a	JJ	1	,-1a	J	0	*	*	3	,,-1a,	JJJ
+Chromosome7	147151832	T	2	.C	JF	1	.	s	0	*	*	0	*	*	1	C	J
+Chromosome7	147215157	T	1	.	J	1	.-1A	J	0	*	*	0	*	*	1	.-1A	J
+Chromosome7	147371090	G	5	AA.A.	FJJJF	4	..AA	JsJJ	12	,.........A.	sJJJJJJJosJJ	8	........	JAJFJFJJ	9	...A.A...	JJJJJJJJJ
+Chromosome7	147371098	C	5	TT.T.	JJJJF	4	..TT	JsJJ	13	,..........T.	sFJJJJJJ7ssJF	7	T..T.T.	JJ<JJJJ	9	...T.T...	JJJJJJJJJ
+Chromosome7	147380164	G	1	,	J	0	*	*	4	c,,,	JJJA	0	*	*	1	c	J
+Chromosome7	147380910	G	1	A	J	2	.A	oJ	6	....A.	sssJJo	3	...	sJs	2	A.	JA
+Chromosome7	147388231	C	3	,,,	JJF	2	,A	J`	1	T	J	0	*	*	0	*	*
+Chromosome7	147388327	C	5	,,,,A	FJFAJ	1	A	j	2	..	sF	0	*	*	0	*	*
+Chromosome7	147390185	C	1	.	J	0	*	*	1	T	J	2	.T	<J	2	.T	J7
+Chromosome7	147403009	T	0	*	*	1	,	J	0	*	*	1	c	J	3	,,c	JJJ
+Chromosome7	147405041	T	0	*	*	0	*	*	3	.C.	eF7	1	.	J	4	CCCC	FJA7
+Chromosome7	147405436	G	1	a	J	0	*	*	1	,	J	0	*	*	4	,,,a	JJJJ
+Chromosome7	147405479	A	1	g	J	0	*	*	2	,,	J7	0	*	*	4	,,,g	JJJJ
+Chromosome7	147411997	C	4	T...	JFJJ	2	T.	JJ	5	.....	JJJJJ	6	...T..	JJJJFJ	2	T.	JJ
+Chromosome7	147511952	G	1	.-1A	I	0	*	*	0	*	*	1	.	J	1	.-1A	I
+Chromosome7	147659471	G	0	*	*	3	..+1C.+1C	<;C	1	.	J	0	*	*	2	.-1T.-1T	JJ
+Chromosome7	147744973	G	0	*	*	1	T	[	0	*	*	1	,	s	2	t,	JJ
+Chromosome7	147764410	T	1	.-1C	J	0	*	*	2	.-1C.-1C	JF	0	*	*	1	.-1C	J
+Chromosome7	148198796	G	3	..T	JJJ	0	*	*	3	...	JJJ	0	*	*	2	TT	JJ
+Chromosome7	148198800	G	3	...	JJJ	0	*	*	3	AA.	JJJ	0	*	*	2	AA	JJ
+Chromosome7	148198917	T	4	Cc,,	_JAJ	0	*	*	3	.$cc	nAJ	2	.c	os	2	cc	JJ
+Chromosome7	148198951	C	3	,,a	JJ5	0	*	*	3	,gg	JJJ	1	.	s	0	*	*
+Chromosome7	148199059	C	0	*	*	2	.t	Js	3	t..	sHF	2	..	JJ	0	*	*
+Chromosome7	148199067	G	0	*	*	2	.a	Jk	3	,..	sjo	2	A.	JJ	0	*	*
+Chromosome7	148199071	G	0	*	*	2	A,	Js	3	,A.	s\e	2	T.	FJ	0	*	*
+Chromosome7	148199090	T	0	*	*	2	.a	Fj	3	,C.	sks	2	..	JJ	0	*	*
+Chromosome7	148199137	G	0	*	*	2	.,	kj	3	,A.	sas	2	A.	As	0	*	*
+Chromosome7	148199147	G	0	*	*	2	.a	sa	3	,A.	o`o	2	A.	Jo	0	*	*
+Chromosome7	148199163	C	0	*	*	2	.,	ks	2	.T	R`	2	T.	Fs	0	*	*
+Chromosome7	148199168	T	0	*	*	2	.c	k5	2	.C	M]	2	A.	Fs	0	*	*
+Chromosome7	148199176	G	0	*	*	1	,	J	2	aa	FJ	2	A.	Js	0	*	*
+Chromosome7	148199190	G	0	*	*	1	,	F	1	a	J	2	A.	bs	0	*	*
+Chromosome7	148199193	C	0	*	*	1	,	J	1	a	J	2	G.	bs	0	*	*
+Chromosome7	148199198	A	0	*	*	1	,	J	1	g	J	2	G.	[s	0	*	*
+Chromosome7	148217976	G	0	*	*	0	*	*	3	,,a	JJA	1	a	J	1	,	J
+Chromosome7	148217981	T	0	*	*	0	*	*	3	ccg	JJJ	1	g	J	1	,	J
+Chromosome7	148218000	C	0	*	*	0	*	*	3	,,t	FFF	1	t	F	1	,	F
+Chromosome7	148224932	A	0	*	*	0	*	*	1	.-1T	F	1	.-1T	J	2	..-1T	JJ
+Chromosome7	148280843	C	1	a	A	0	*	*	1	,	J	0	*	*	2	g,	JJ
+Chromosome7	148280848	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
+Chromosome7	148280879	G	1	a	7	0	*	*	1	,	J	0	*	*	2	a,	FJ
+Chromosome7	148280908	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
+Chromosome7	148280911	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
+Chromosome7	148314979	G	0	*	*	4	,..t	FsJJ	2	,a	JJ	2	,,	JJ	0	*	*
+Chromosome7	148318811	G	2	,a	<J	0	*	*	0	*	*	2	.,	sJ	1	a	J
+Chromosome7	148411800	C	1	t	J	2	T.	sJ	1	,	J	0	*	*	0	*	*
+Chromosome7	148535565	T	0	*	*	0	*	*	1	.-1C	s	1	.-1C	f	1	.	F
+Chromosome7	148597564	C	0	*	*	4	....	JJJJ	2	.T	AJ	0	*	*	1	T	J
+Chromosome7	148620276	C	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,	J
+Chromosome7	148661594	A	0	*	*	0	*	*	1	.	A	1	G	J	2	,G	sA
+Chromosome7	148661671	T	0	*	*	0	*	*	1	.	J	1	C	o	2	,C	sJ
+Chromosome7	148661673	A	0	*	*	0	*	*	1	.	<	1	G	o	2	,G	sJ
+Chromosome7	148661677	T	0	*	*	0	*	*	1	.	J	1	C	s	2	,C	sJ
+Chromosome7	148661683	T	0	*	*	0	*	*	1	.	F	1	C	s	2	,C	sJ
+Chromosome7	148661692	G	0	*	*	0	*	*	1	.	J	1	A	s	2	,A	sF
+Chromosome7	148748786	A	0	*	*	1	,-5tgcac	;	1	,	F	1	,-5tgcac	;	0	*	*
+Chromosome7	148766597	T	0	*	*	1	C	J	1	.	o	2	.C	Js	0	*	*
+Chromosome7	149349323	T	3	.+1A.+1A.+1A	JJJ	0	*	*	2	.+1A.	FJ	0	*	*	1	.	F
+Chromosome7	149349335	T	3	CCC	JJJ	0	*	*	2	A.+2AC	J?	0	*	*	1	.	J
+Chromosome7	149349523	A	3	t,,	JJJ	1	T	o	2	,,	JF	0	*	*	0	*	*
+Chromosome7	149349534	T	3	c,,	JFJ	1	A	s	2	,,	JJ	0	*	*	0	*	*
+Chromosome7	149349569	C	3	aa,	JJJ	1	A	s	2	,,	JF	0	*	*	0	*	*
+Chromosome7	149349572	G	3	a,,	JJA	1	A	s	2	,,	JJ	0	*	*	0	*	*
+Chromosome7	149358685	T	0	*	*	1	c	7	2	,c	JJ	0	*	*	1	,	F
+Chromosome7	149358758	G	0	*	*	1	c	J	2	,c	JJ	0	*	*	1	,	J
+Chromosome7	149358770	G	0	*	*	1	c	F	2	,c	JJ	0	*	*	1	,	J
+Chromosome7	149508647	T	0	*	*	1	.	J	1	.-3AGC	J	0	*	*	1	.-3AGC	J
+Chromosome7	149510115	A	0	*	*	1	c	J	2	.,	JF	2	c^],	A;	0	*	*
+Chromosome7	149510117	A	0	*	*	1	g	J	2	.,	AF	2	g,	J>	0	*	*
+Chromosome7	149510122	A	0	*	*	1	c	J	2	.,	JJ	2	c,	FF	0	*	*
+Chromosome7	149510123	T	0	*	*	1	c	J	2	.,	FJ	2	c,	FJ	0	*	*
+Chromosome7	149510160	G	0	*	*	2	a.	Js	2	.,	JJ	2	a,	<F	0	*	*
+Chromosome7	149510176	C	0	*	*	2	a.	Js	2	.,	JJ	2	a,	FA	0	*	*
+Chromosome7	149510209	C	0	*	*	2	g.	Js	2	.,	FJ	2	g,	JJ	0	*	*
+Chromosome7	149510210	A	0	*	*	2	g.	Js	1	,	J	2	g,	JJ	0	*	*
+Chromosome7	149510222	A	0	*	*	1	g	8	1	,	J	2	g,	8J	0	*	*
+Chromosome7	149513237	C	0	*	*	1	*	J	0	*	*	1	,	A	1	.-1A	a
+Chromosome7	149870642	C	0	*	*	2	t,	JJ	0	*	*	1	a	A	1	,	J
+Chromosome7	149889174	A	2	,-4taag,-4taag	55	0	*	*	0	*	*	1	.	s	1	,-4taag	5
+Chromosome7	150079851	T	0	*	*	0	*	*	1	.-1G	J	1	.	<	2	.-1G.	JJ
+Chromosome7	150079986	T	0	*	*	2	CC	ss	0	*	*	1	,	<	3	C,c	sJJ
+Chromosome7	150273116	A	6	,,,,,g	JJJJJJ	5	.g,,,	sJJJA	4	,,g,	JJJF	5	,.,g,	JfJAJ	8	,,,,,,,,	7FJJFJJF
+Chromosome7	150401611	T	1	.-1C	J	1	G	s	0	*	*	0	*	*	1	.-1C	J
+Chromosome7	150524942	C	1	.	J	0	*	*	2	.G	JJ	1	G	J	2	G.	FJ
+Chromosome7	150524980	G	0	*	*	0	*	*	1	,-3aac	6	1	,-3aac	6	2	.-3AAC,-3aac	_6
+Chromosome7	150525031	C	1	,-2ct	7	0	*	*	1	,-2ct	7	1	,-2ct	7	1	,-2ct	7
+Chromosome7	150553761	T	1	,	J	0	*	*	1	,-4aaaa	J	0	*	*	1	c	J
+Chromosome7	150625450	A	0	*	*	1	g	<	0	*	*	2	Gc	eF	1	.	J
+Chromosome7	150625464	A	0	*	*	1	,	J	0	*	*	2	.c	jJ	1	G	J
+Chromosome7	150625492	C	0	*	*	2	a.	<A	0	*	*	2	Aa	VJ	1	.	<
+Chromosome7	150625494	A	0	*	*	2	g.	FF	0	*	*	2	G,	oF	1	G	J
+Chromosome7	150625509	G	0	*	*	2	t.	JJ	0	*	*	2	Tc	sF	1	.	F
+Chromosome7	150625513	G	0	*	*	2	a.	JJ	0	*	*	2	Aa	oJ	1	.	F
+Chromosome7	150625516	C	0	*	*	2	a.	FJ	0	*	*	2	Aa	oJ	1	.	A
+Chromosome7	150625521	G	0	*	*	2	t.	JJ	0	*	*	2	T,	sJ	1	T	F
+Chromosome7	150625533	C	0	*	*	2	a.	JJ	0	*	*	2	Aa	VJ	1	.	J
+Chromosome7	150625540	T	0	*	*	2	g.	<J	0	*	*	2	gg	JJ	1	.	J
+Chromosome7	150625710	T	1	C	J	1	,	J	0	*	*	0	*	*	2	,c	JJ
+Chromosome7	150842663	C	0	*	*	2	.G	jW	1	.	`	0	*	*	1	g	F
+Chromosome7	150870104	T	0	*	*	1	.	F	1	G	F	0	*	*	3	..G	JJJ
+Chromosome7	150952450	T	0	*	*	7	....G..	nnjnJVn	6	...A..	snJJJn	9	.........	VnnnnJJJn	16	...............A	JnnJnnnnjnjnnnnF
+Chromosome7	150952458	G	0	*	*	7	T...T..	sssooes	6	.T....	ssJsVs	9	.........	ssossjJJs	15	.....T.....T...	Jsssssoosss`sjk
+Chromosome7	150952459	A	0	*	*	7	C...C..	sssoses	6	.C.+6TCTCTC..+4TCTC.	ssFsVs	9	.......+6TCTCTC.+6TCTCTC.	ossssaJJs	15	.+6TCTCTC....C.....C...	Jsssssosssssss\
+Chromosome7	151043725	G	0	*	*	1	,-4aaat	F	0	*	*	2	,,	JJ	1	,-4aaat	J
+Chromosome7	151066211	C	1	,-2at	H	0	*	*	0	*	*	2	,-2at,-2at	H7	2	,-2at,	HF
+Chromosome7	151095376	G	0	*	*	0	*	*	1	c	A	2	.T	ss	2	t,	JJ
+Chromosome7	151095386	A	0	*	*	0	*	*	1	t	A	2	.T	os	2	,,	JJ
+Chromosome7	151095388	G	0	*	*	0	*	*	1	t	J	2	.T	ss	2	,,	JJ
+Chromosome7	151095396	G	0	*	*	0	*	*	1	t	F	2	A.	ss	2	,a	JJ
+Chromosome7	151095399	C	0	*	*	0	*	*	1	a	A	2	.A	ss	2	,,	JJ
+Chromosome7	151095420	G	0	*	*	0	*	*	1	t	J	2	,C	Js	2	,,	JJ
+Chromosome7	151095442	C	0	*	*	0	*	*	1	,	J	1	t	J	2	,t	JJ
+Chromosome7	151116773	G	1	.	<	0	*	*	4	CC.C	JJJJ	2	.C	JJ	1	C	F
+Chromosome7	151116802	C	1	T	F	0	*	*	4	..AT	FJJJ	2	.A	AJ	1	.	J
+Chromosome7	151116935	G	1	,-1c	@	0	*	*	1	.	s	2	.-1C,-1c	@7	0	*	*
+Chromosome7	151555818	C	2	..	JF	0	*	*	0	*	*	1	A	F	2	.A	sJ
+Chromosome7	151555823	G	2	..	JJ	0	*	*	0	*	*	1	A	J	2	.A	sJ
+Chromosome7	151555918	G	2	,,	JJ	0	*	*	0	*	*	1	A	s	2	,a	JJ
+Chromosome7	151600294	T	1	,-1c	H	0	*	*	2	,-1c,-1c	HH	0	*	*	3	,-1c,-1c,-1c	AHH
+Chromosome7	151844104	G	4	..T.	ssRV	4	TT..	ssoo	4	T...	skos	3	.T.	osV	1	.	s
+Chromosome7	151906721	T	0	*	*	1	C	A	2	C.	FJ	1	.	J	0	*	*
+Chromosome7	151906725	C	0	*	*	1	T	J	2	T.	FJ	1	.	J	0	*	*
+Chromosome7	151906749	A	0	*	*	1	.-1G	W	2	.-1G.-1G	AJ	1	.	J	0	*	*
+Chromosome7	151906780	A	0	*	*	1	.-1G	j	2	.-1G.-1G	JJ	1	.	J	0	*	*
+Chromosome7	151916564	G	2	tt	7J	0	*	*	1	,	J	0	*	*	3	t,,	<7A
+Chromosome7	151916592	A	2	,-1t,-1t	AJ	0	*	*	1	,	J	0	*	*	3	,-1t,,	<<J
+Chromosome7	151916624	G	1	a	J	0	*	*	1	,	J	0	*	*	2	a,	FJ
+Chromosome7	151916651	C	2	tt	AJ	0	*	*	1	,	J	0	*	*	3	t,,	JJA
+Chromosome7	151917338	G	1	,	J	0	*	*	1	t	J	3	.tt	sFJ	0	*	*
+Chromosome7	151917365	A	1	,	J	0	*	*	1	g	J	3	.gg	sJ7	0	*	*
+Chromosome7	151962866	C	2	T.	J7	4	T...	JJ`J	0	*	*	0	*	*	2	..	JJ
+Chromosome7	151962904	T	1	C	J	4	C...	JJss	0	*	*	0	*	*	2	..	FJ
+Chromosome7	151962907	A	2	G.	JF	4	G...	JJss	0	*	*	0	*	*	2	..	FJ
+Chromosome7	151963027	C	2	t,	JJ	3	,,t	JJJ	0	*	*	0	*	*	2	,,	JJ
+Chromosome7	151963030	A	2	ct	JJ	3	,c,	JJJ	0	*	*	0	*	*	2	,,	JJ
+Chromosome7	151963058	C	2	t,	JJ	2	,,	JJ	0	*	*	0	*	*	2	a,	JF
+Chromosome7	151963084	G	2	a,	JJ	2	a,	JJ	0	*	*	0	*	*	2	,,	JJ
+Chromosome7	152050618	A	1	c	J	0	*	*	2	ct	FJ	1	.	s	0	*	*
+Chromosome7	152067046	T	0	*	*	2	..-3ATA	A8	1	.-3ATA	7	0	*	*	1	.-3ATA	7
+Chromosome7	152067217	A	0	*	*	2	g,	JJ	1	g	J	0	*	*	1	,	F
+Chromosome7	152153159	G	2	,-1c,-1c	JJ	0	*	*	1	,-1c	J	0	*	*	6	,-1c,-1c,-1c,-1c,-1c,-1c	FJJFJF
+Chromosome7	152153172	G	2	,-1a,-1a	FF	0	*	*	1	,-1a	A	0	*	*	6	,-1a,-1a,-1a,-1a,-1a,-1a	JJJJJJ
+Chromosome7	152190843	C	0	*	*	1	.	J	1	.-4CTAG	?	1	.-4CTAG	7	0	*	*
+Chromosome7	152202726	G	1	,	J	0	*	*	1	A	K	0	*	*	2	C.	ss
+Chromosome7	152202758	C	1	,	J	0	*	*	1	A	M	0	*	*	2	T.	ss
+Chromosome7	152202792	G	1	,	J	0	*	*	1	t	J	0	*	*	2	,t	JJ
+Chromosome7	152202793	A	1	,	J	0	*	*	1	g	F	0	*	*	2	,g	JJ
+Chromosome7	152202858	A	1	,	J	0	*	*	1	g	J	0	*	*	2	,g	JJ
+Chromosome7	152264926	C	1	.	J	0	*	*	0	*	*	2	.T	JJ	1	T	J
+Chromosome7	152264989	T	1	.	J	0	*	*	0	*	*	2	.C	Js	1	C	J
+Chromosome7	152264998	G	1	.	J	0	*	*	0	*	*	2	T.	Jo	1	A	J
+Chromosome7	152265024	C	1	A	J	0	*	*	0	*	*	2	T.	Fk	1	.	A
+Chromosome7	152272837	C	0	*	*	1	t	J	3	a,,	JJJ	0	*	*	2	,,	J<
+Chromosome7	152294855	T	0	*	*	1	,	J	1	c	J	0	*	*	2	c,	JJ
+Chromosome7	152300847	G	0	*	*	1	.-3GAT	8	0	*	*	1	.-3GAT	8	1	.-3GAT	B
+Chromosome7	152341298	C	1	.-6TGGTAT	J	0	*	*	0	*	*	1	.	J	2	.-6TGGTAT.	J<
+Chromosome7	152486146	G	0	*	*	1	A	J	0	*	*	1	.	J	2	A.	JJ
+Chromosome7	152497740	C	1	,	J	0	*	*	0	*	*	1	,-5agagt	J	1	,-5agagt	A
+Chromosome7	152497754	A	1	,-1c	J	0	*	*	0	*	*	1	,-1c	J	1	,-1c	J
+Chromosome7	152499259	T	0	*	*	2	CC	JJ	2	CG	JF	0	*	*	1	G	J
+Chromosome7	152499266	G	0	*	*	2	..	JJ	2	.T	JJ	0	*	*	1	T	J
+Chromosome7	152499283	C	0	*	*	2	..	JJ	2	.T	JJ	0	*	*	2	T.	AJ
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+Chromosome7	301181431	G	16	,,,,,,,,,,,,,,,,	JJFFJJJJJJJJJJJA	12	,,,a,,,,,,,,	JJJJJJJJJJJJ	13	a,,,,,,,,,,,,	9JJJFJJJJJJJJ	12	,,,,,a,,,a,,	JFJJJJJJJJJJ	20	,,,,,a,,,,,,,,,,,,,,	JJFJJJFJJJFJJJJJJJJJ
+Chromosome7	301188415	G	2	a,	A7	0	*	*	0	*	*	1	,	J	1	a	F
+Chromosome7	301212284	C	2	t.	FJ	2	T.	jF	0	*	*	1	T	s	1	.	A
+Chromosome7	301212350	C	2	t.	JJ	2	t.	JJ	0	*	*	1	.	s	0	*	*
+Chromosome7	301245506	G	0	*	*	1	A	J	2	.A	ns	1	.	s	0	*	*
+Chromosome7	301439989	T	0	*	*	3	CC.	sss	1	c	J	0	*	*	2	Ca	oJ
+Chromosome7	301439994	A	0	*	*	3	.G.	sss	1	,	J	0	*	*	2	Gg	sJ
+Chromosome7	301440003	G	0	*	*	3	..A	sss	1	a	J	0	*	*	2	.,	sJ
+Chromosome7	301440014	A	0	*	*	3	GGT	sss	1	g	J	0	*	*	2	.g	jJ
+Chromosome7	301440031	C	0	*	*	3	G..	ss[	1	,	J	0	*	*	2	,t	JJ
+Chromosome7	301440039	C	0	*	*	3	..t	ssJ	1	,	J	0	*	*	2	,t	JJ
+Chromosome7	301497254	C	0	*	*	2	A.	JJ	0	*	*	3	TTT	JFJ	3	...	Fsj
+Chromosome7	301497580	T	0	*	*	2	,c	JJ	0	*	*	3	aaa	JJJ	1	,	F
+Chromosome7	301498098	A	2	cc	<A	0	*	*	0	*	*	4	C...	s99A	1	,$	>
+Chromosome7	301524162	C	0	*	*	2	T.	JJ	0	*	*	1	.	J	2	.T	JJ
+Chromosome7	301524325	G	0	*	*	2	t,	FJ	0	*	*	1	,	J	2	,t	JF
+Chromosome7	301548618	C	0	*	*	1	,	F	1	T	s	3	,.t	JsJ	0	*	*
+Chromosome7	301548630	A	0	*	*	1	,	F	1	G	s	2	G,	sJ	0	*	*
+Chromosome7	301606890	T	1	,	F	0	*	*	1	a	F	0	*	*	2	,a	JF
+Chromosome7	301606926	C	1	,-1t	J	0	*	*	1	,-1t	7	0	*	*	2	,-1t,-1t	JJ
+Chromosome7	301654611	G	0	*	*	0	*	*	2	..	Js	3	A..	JsJ	2	A.	7J
+Chromosome7	301765743	A	2	,,-1t	JF	1	t	J	0	*	*	0	*	*	1	,	J
+Chromosome7	301775567	T	1	.-1G	o	0	*	*	1	,-1g	J	3	.,-1g,	sAJ	0	*	*
+Chromosome7	301775578	C	2	.+1T,+1t	JJ	0	*	*	1	,+1t	J	3	.,+1t,	sAF	0	*	*
+Chromosome7	301775584	C	1	.-4GCTA	M	0	*	*	1	,-4gcta	7	2	.,-4gcta	S;	0	*	*
+Chromosome7	301790232	A	1	c	J	0	*	*	0	*	*	1	g	J	2	cg	JJ
+Chromosome7	301807681	C	1	,+1t	J	0	*	*	2	.+1T,+1t	5J	1	t	J	0	*	*
+Chromosome7	301839907	T	2	.C	JF	1	C	J	0	*	*	1	.	J	0	*	*
+Chromosome7	301840060	T	2	g,	JJ	1	,	J	0	*	*	1	g	J	0	*	*
+Chromosome7	301902772	G	1	.-2AA	A	0	*	*	1	.-1A	J	1	.-1A	s	1	.	J
+Chromosome7	302047409	C	0	*	*	2	,T	Jj	0	*	*	1	.	s	1	t	J
+Chromosome7	302051155	C	1	.+2AA	o	2	.+2AG.+2AG	JJ	2	.+2AG.+1A	JJ	0	*	*	0	*	*
+Chromosome7	302051181	A	2	Cc	sJ	2	..	ss	2	.C	sj	0	*	*	0	*	*
+Chromosome7	302051230	C	2	Aa	sJ	2	..	ss	2	.A	so	0	*	*	0	*	*
+Chromosome7	302051262	C	2	tt	JJ	2	,,	JJ	2	,t	JF	0	*	*	0	*	*
+Chromosome7	302051352	G	2	.A	JJ	0	*	*	0	*	*	2	.A	JJ	1	.	J
+Chromosome7	302051365	T	2	.A	JJ	0	*	*	0	*	*	2	.A	JJ	1	.	J
+Chromosome7	302051370	C	2	.G	JJ	0	*	*	0	*	*	2	TG	JJ	1	.	J
+Chromosome7	302051375	G	2	.C	JF	0	*	*	0	*	*	2	.C	JJ	1	.	J
+Chromosome7	302051388	G	1	A	J	0	*	*	0	*	*	2	A.	FJ	1	.	J
+Chromosome7	302051427	A	3	.T.	JJJ	0	*	*	0	*	*	2	.T	JJ	1	.	J
+Chromosome7	302051559	T	3	.,g	oJ7	0	*	*	0	*	*	2	g,	JJ	1	,	J
+Chromosome7	302053781	T	2	..	F7	0	*	*	2	.C	JJ	0	*	*	1	C	J
+Chromosome7	302060228	A	1	,-11gggccgggctg	J	1	.	9	0	*	*	1	,-11gggccgggctg	J	0	*	*
+Chromosome7	302061974	G	2	.-1T.-1T	JJ	1	.-1T	J	0	*	*	2	..-1T	JJ	1	.-1T	J
+Chromosome7	302066875	T	3	.$,C	jJs	1	C	J	0	*	*	1	.	e	0	*	*
+Chromosome7	302067145	G	1	.	F	1	T	<	0	*	*	0	*	*	2	.T	FJ
+Chromosome7	302073124	C	0	*	*	1	,-4taag	J	1	G	s	0	*	*	1	,	J
+Chromosome7	302073163	G	0	*	*	1	a	J	2	.+3TCA,	oJ	0	*	*	1	,	J
+Chromosome7	302073191	A	0	*	*	1	,	J	2	.g	sJ	1	g	A	0	*	*
+Chromosome7	302100175	C	0	*	*	1	.-4GCTA	E	1	.-4GCTA	5	0	*	*	1	.-4GCTA	H
+Chromosome7	302178668	T	0	*	*	1	.-3GAA	J	1	.-3GAA	J	0	*	*	1	.-3GAA	J
+Chromosome7	302198727	A	0	*	*	2	CC	JJ	4	C...	JAAA	6	CC....	FJAAAA	2	..	AA
+Chromosome7	302225172	T	0	*	*	0	*	*	3	G,,	sJJ	1	G	s	1	,	J
+Chromosome7	302232479	T	1	c	J	0	*	*	1	.	s	0	*	*	2	c,	JA
+Chromosome7	302267865	A	1	,-2ct	J	0	*	*	0	*	*	1	,-2ct	J	1	,	<
+Chromosome7	302307654	G	1	A	6	2	..	JJ	0	*	*	0	*	*	2	.A	s6
+Chromosome7	302517746	G	0	*	*	2	.-3CCC.-3CCC	JJ	1	.-3CCC	J	0	*	*	4	...-3CCC.-3CCC	J<JJ
+Chromosome7	302517763	A	0	*	*	2	.-3GCT.-3GCT	JJ	1	.-3GCT	J	0	*	*	3	.$.-3GCT.-3GCT	DJF
+Chromosome7	302517777	A	0	*	*	2	.+1T.+1T	>>	1	.+1T	>	0	*	*	2	.+1T.+1T	><
+Chromosome7	302517810	T	0	*	*	2	CC	os	2	C,	sJ	0	*	*	4	CC,,	okJJ
+Chromosome7	302517811	A	0	*	*	2	TT	so	2	Tg	sJ	0	*	*	4	TTgg	s`JJ
+Chromosome7	302587874	C	5	T....	JJ<oA	8	..TT.TGT	JJAJJFsJ	6	T.T..T	JFJ<F<	3	...	JJJ	3	.TT	J<J
+Chromosome7	302751881	T	1	.	J	2	.A	JJ	3	..C	7oJ	0	*	*	2	.C	7J
+Chromosome7	302864739	T	0	*	*	4	,$,,c	AJJJ	1	c	J	0	*	*	1	,	J
+Chromosome7	302864755	G	0	*	*	3	,,a	JJJ	1	a	J	0	*	*	1	,	J
+Chromosome7	302951458	A	3	,,,	J7J	3	g,,	JFJ	4	g,,,	JJJJ	7	,,,g,,g	JJA7FJJ	9	,,,,,,g,,	JJJJJJJJJ
+Chromosome7	302951530	C	3	a,,	JJJ	3	a,,	JJJ	4	a,,,	JJJJ	7	,,,a,,a	JJJJJJJ	8	,,a,,,a,	JJJJJJJJ
+Chromosome7	303014148	T	1	g	7	1	,	J	0	*	*	2	,G	JF	0	*	*
+Chromosome7	303084658	G	0	*	*	0	*	*	2	.A	JJ	1	.	J	1	A	J
+Chromosome7	303084739	T	0	*	*	0	*	*	2	.G	os	1	.	s	1	G	J
+Chromosome7	303153086	C	1	,-2at	J	0	*	*	0	*	*	1	.	s	1	,-2at	J
+Chromosome7	303228613	C	3	...	JJJ	0	*	*	1	T	J	2	T.	JJ	5	.TTTT	AJJJJ
+Chromosome7	303315454	G	0	*	*	2	.c	oJ	1	,	F	1	c	J	0	*	*
+Chromosome7	303315463	A	0	*	*	2	.g	sJ	1	,	J	1	g	J	0	*	*
+Chromosome7	303315489	C	0	*	*	2	,a	JJ	1	,	J	1	a	J	0	*	*
+Chromosome7	303344962	C	1	.	J	1	,-1t	s	1	.-1T	J	0	*	*	1	T	J
+Chromosome7	303561466	C	1	.-1A	F	0	*	*	2	.-1A.+1A	JJ	1	.	F	0	*	*
+Chromosome7	303583749	T	2	G.	JA	1	.	J	1	G	J	0	*	*	0	*	*
+Chromosome7	303592219	C	1	.-1A	s	1	.-1A	s	0	*	*	1	.	e	0	*	*
+Chromosome7	303592248	G	2	.+1A,+1a	JJ	2	.+1A,+1a	JJ	0	*	*	1	.+1A	k	0	*	*
+Chromosome7	303632751	A	0	*	*	1	g	J	1	.	R	0	*	*	2	,g	<J
+Chromosome7	303727273	G	0	*	*	1	A	V	1	.	s	0	*	*	2	A.	\o
+Chromosome7	303737176	C	1	G	F	1	.	<	0	*	*	0	*	*	2	G.	JJ
+Chromosome7	303827664	G	2	T.	J<	1	A	J	1	T	J	2	..	JJ	2	T.	FJ
+Chromosome7	303828066	G	2	,a	JJ	0	*	*	1	a	J	2	,,	JJ	3	aa,	JAJ
+Chromosome7	303828087	T	2	,a	<J	0	*	*	1	a	J	2	,,	JJ	3	aa,	JJJ
+Chromosome7	303828132	C	2	,t	JJ	0	*	*	1	t	J	2	,,	JJ	2	,t	JF
+Chromosome7	303828156	G	2	,t	JJ	0	*	*	1	t	J	2	,,	JJ	2	t,	JF
+Chromosome7	303932204	T	6	,,,,,,	JJJJAJ	0	*	*	0	*	*	2	c,	JJ	3	,,c	<JJ
+Chromosome7	304005867	A	1	G	s	0	*	*	2	.g	ss	0	*	*	1	,	<
+Chromosome7	304030217	G	2	.C	JF	1	.	J	2	.C	s7	0	*	*	0	*	*
+Chromosome7	304074310	A	1	.-3AGC	:	1	.-3AGC	:	2	.-3AGC.-3AGC	SS	0	*	*	0	*	*
+Chromosome7	304147109	C	2	.T	ss	0	*	*	1	t	J	2	t,	JF	2	,,	JJ
+Chromosome7	304148495	G	1	a	J	2	.,	JJ	2	t,	JA	0	*	*	0	*	*
+Chromosome7	304448917	T	1	,	J	0	*	*	1	g	J	3	gg,	JJJ	0	*	*
+Chromosome7	304482703	C	0	*	*	1	.-2CA	;	0	*	*	1	.-2CA	;	1	.-2CA	;
+Chromosome7	304487158	A	2	.G	7J	1	.	F	0	*	*	0	*	*	1	G	J
+Chromosome7	304503657	A	0	*	*	2	.C	Js	1	C	F	1	.	F	0	*	*
+Chromosome7	304503707	A	0	*	*	2	gt	JJ	1	g	J	1	,	J	0	*	*
+Chromosome7	304554563	C	0	*	*	1	,-1a	J	0	*	*	1	.-1A	7	1	.-1A	o
+Chromosome7	304554674	C	1	G	G	0	*	*	0	*	*	1	,	J	2	,G	JJ
+Chromosome7	304554685	G	1	T	J	0	*	*	0	*	*	1	,	J	2	,T	JJ
+Chromosome7	304554686	T	1	C	J	0	*	*	0	*	*	1	a	F	2	aC	JJ
+Chromosome7	304554699	T	1	.-6AAATGA	5	0	*	*	0	*	*	1	,	J	2	,.-6AAATGA	A5
+Chromosome7	304554814	A	2	.t	FJ	0	*	*	0	*	*	1	.	F	1	t	J
+Chromosome7	304554815	G	2	.c	JF	0	*	*	0	*	*	1	.	F	1	c	J
+Chromosome7	304554842	C	2	.a	JJ	0	*	*	0	*	*	1	.	<	1	a	F
+Chromosome7	304554843	A	2	.t	J7	0	*	*	0	*	*	1	.	A	1	t	J
+Chromosome7	304554858	T	2	.c	JF	0	*	*	0	*	*	1	.	J	1	c	J
+Chromosome7	304564618	C	1	t	J	0	*	*	2	t,	JJ	1	,	J	0	*	*
+Chromosome7	304589857	A	2	g,	JJ	0	*	*	1	g	J	3	,,g	JJJ	1	,	J
+Chromosome7	304589866	T	2	c,	JJ	0	*	*	1	c	F	3	,,c	JFJ	1	,	J
+Chromosome7	304589881	T	2	c,	JA	0	*	*	1	c	J	3	,,c	JFJ	1	,	J
+Chromosome7	304592022	C	0	*	*	1	.	s	1	T	k	0	*	*	3	..T	sss
+Chromosome7	304612477	A	1	,-1g	J	1	.-1G	s	0	*	*	1	.-1G	V	0	*	*
+Chromosome7	304612531	G	1	,-5acgcc	;	1	.-5ACGCC	U	0	*	*	1	,	J	0	*	*
+Chromosome7	304676954	A	1	T	7	0	*	*	3	,.T	sFF	2	,.	sa	2	.+1T.	FJ
+Chromosome7	304808634	C	2	T.	JJ	0	*	*	0	*	*	2	..	JJ	2	TT	JJ
+Chromosome7	304890206	T	2	,c	FJ	0	*	*	0	*	*	1	.	o	1	c	J
+Chromosome7	304890237	A	2	,t	AF	0	*	*	0	*	*	1	.	s	1	t	J
+Chromosome7	304891606	T	0	*	*	1	.-1C	G	1	.-1C	G	1	.-1C	G	0	*	*
+Chromosome7	304913861	C	2	.T	JJ	0	*	*	0	*	*	1	.	J	1	T	J
+Chromosome7	304913944	G	2	.A	JJ	0	*	*	0	*	*	1	.	J	1	A	J
+Chromosome7	304913947	G	2	.-1T.-1T	JJ	0	*	*	0	*	*	1	.	J	1	.-1T	J
+Chromosome7	304913966	G	2	.A	JJ	0	*	*	0	*	*	1	.	J	1	A	J
+Chromosome7	304913971	C	2	.T	JF	0	*	*	0	*	*	1	.	J	1	T	J
+Chromosome7	304914151	A	2	,,-1g	FJ	0	*	*	0	*	*	2	.,	oJ	1	,-1g	J
+Chromosome7	304914152	G	2	,*	JJ	0	*	*	0	*	*	2	.,	oJ	1	*	J
+Chromosome7	304914169	G	2	,+1t,+1t	JF	0	*	*	0	*	*	2	,+1t,	7J	1	,+1t	J
+Chromosome7	304914184	A	2	,g	JJ	0	*	*	0	*	*	2	,,	FJ	1	g	J
+Chromosome7	304966252	T	1	C	J	1	.	s	0	*	*	0	*	*	2	C^].	JA
+Chromosome7	304966328	T	1	C	s	1	.	s	0	*	*	0	*	*	2	C.	sj
+Chromosome7	304966354	C	1	t	J	1	,	J	0	*	*	0	*	*	2	.t	sJ
+Chromosome7	304967611	C	0	*	*	2	A.	FJ	1	.	J	0	*	*	1	A	R
+Chromosome7	304967658	C	0	*	*	2	T,	sJ	1	t	A	0	*	*	1	,	J
+Chromosome7	304967663	G	0	*	*	2	A,	sJ	1	a	F	0	*	*	1	,	J
+Chromosome7	305057345	A	1	.	J	2	.G	JJ	0	*	*	0	*	*	1	G	J
+Chromosome7	305122959	C	0	*	*	2	,,	JJ	2	T.	Jo	0	*	*	1	g	9
+Chromosome7	305361973	T	1	.	J	2	C.	AF	0	*	*	0	*	*	1	C	J
+Chromosome7	305563585	A	0	*	*	2	C.	JJ	1	.	s	0	*	*	1	C	J
+Chromosome7	305563645	C	0	*	*	2	T.	AJ	1	.	s	0	*	*	1	T	7
+Chromosome7	305563762	G	0	*	*	2	,t	<F	2	,A	Jo	0	*	*	1	,	J
+Chromosome7	305563957	G	0	*	*	1	.	J	2	.A	JJ	1	A	F	0	*	*
+Chromosome7	305563984	G	0	*	*	2	..-6AGGAGA	J5	3	..-6AGGAGA.	F5F	1	.	A	0	*	*
+Chromosome7	305658748	A	0	*	*	0	*	*	3	G.G	JJJ	1	.	f	2	G.	AJ
+Chromosome7	305658798	A	0	*	*	0	*	*	3	.G.	oas	1	G	f	2	..	es
+Chromosome7	305667525	C	0	*	*	0	*	*	5	..TTT	JJJJJ	3	T..	Jss	1	.	J
+Chromosome7	305667558	T	0	*	*	0	*	*	5	GG...	ossss	3	.GG	sss	1	.	s
+Chromosome7	305667573	C	0	*	*	0	*	*	5	..TTT	oosos	3	T..	soo	1	.	s
+Chromosome7	305667774	C	0	*	*	1	.-3TGT	J	1	.-6TGTTGT	J	0	*	*	1	.+9TGTTGTTGT	J
+Chromosome7	305696043	T	0	*	*	0	*	*	1	g	J	2	g,	JA	1	,	J
+Chromosome7	305808465	G	0	*	*	1	.	J	2	.A	JJ	0	*	*	2	A.	JJ
+Chromosome7	305808492	G	0	*	*	1	C	J	2	..	JJ	0	*	*	2	.C	JJ
+Chromosome7	305808530	G	0	*	*	1	A	J	2	..	JF	0	*	*	2	.A	JJ
+Chromosome7	305808575	G	0	*	*	1	.	J	2	.A	J<	0	*	*	2	A.	<J
+Chromosome7	305808591	C	0	*	*	1	T	J	1	.	J	0	*	*	2	.T	J<
+Chromosome7	305808779	T	0	*	*	1	c	J	2	,,	JF	0	*	*	2	,c	JJ
+Chromosome7	305809526	C	2	TT	JJ	0	*	*	0	*	*	1	.	J	2	.T	J7
+Chromosome7	305809645	C	2	TT	FJ	0	*	*	0	*	*	1	.	J	2	.T	J<
+Chromosome7	305809836	G	2	aa	FF	1	.	e	0	*	*	0	*	*	2	,a	AJ
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+Chromosome7	345545135	G	0	*	*	0	*	*	1	a	H	1	.	o	3	A,,	WFJ
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+Chromosome7	345545166	T	0	*	*	0	*	*	1	c	J	1	.	s	4	C,,c	sFJF
+Chromosome7	345545186	A	0	*	*	0	*	*	1	c	J	1	.	s	4	c,,c	JFJJ
+Chromosome7	345545313	G	0	*	*	4	AA.A	FJJF	0	*	*	1	.	J	1	A	J
+Chromosome7	345545357	C	0	*	*	2	G.	FJ	0	*	*	1	.	o	1	G	J
+Chromosome7	345545371	C	0	*	*	3	T.T	7JJ	0	*	*	1	.	s	1	T	7
+Chromosome7	345545438	T	0	*	*	4	ccc,	J<FJ	0	*	*	1	,	J	1	c	J
+Chromosome7	345545445	G	0	*	*	4	ccc,	JJ<J	0	*	*	1	,	J	1	c	J
+Chromosome7	345545451	C	0	*	*	4	,t,,	J<JJ	0	*	*	1	,	J	1	a	J
+Chromosome7	345545452	C	0	*	*	4	t,,,	JJFJ	0	*	*	1	a	J	1	t	J
+Chromosome7	345545462	C	0	*	*	4	t,,,	FJJA	0	*	*	1	,	J	1	t	J
+Chromosome7	345619376	T	1	C	A	0	*	*	0	*	*	1	.	J	2	.c	JJ
+Chromosome7	345619377	A	1	T	A	0	*	*	0	*	*	1	.	7	2	.t	FJ
+Chromosome7	345765612	G	0	*	*	0	*	*	1	.	A	1	.-1A	J	1	.-1A	J
+Chromosome7	345809363	C	8	.,,,t,,,	oAJJJFJ7	3	,,,	JJJ	8	,,t,,,t,	FFJJJJFJ	1	t	J	5	.t,,,	`7JJJ
+Chromosome7	345817628	C	3	.-1T,-1t,	JFA	1	,-1t	7	0	*	*	0	*	*	1	,	J
+Chromosome7	345817633	A	3	Gg,	JAF	1	g	A	0	*	*	0	*	*	1	,	F
+Chromosome7	345817645	A	3	Gg,	JF7	1	g	F	0	*	*	0	*	*	1	,	J
+Chromosome7	345817648	G	3	Aa,	JA<	1	a	A	0	*	*	0	*	*	1	,	J
+Chromosome7	345817673	T	3	Cc,	sJF	1	c	J	0	*	*	0	*	*	1	,	J
+Chromosome7	345817685	A	2	.g	sF	1	g	A	0	*	*	0	*	*	1	,	J
+Chromosome7	345817688	T	3	Cc,	sFJ	1	c	<	0	*	*	0	*	*	1	,	J
+Chromosome7	345817693	A	3	Gg,	sJJ	1	g	J	0	*	*	0	*	*	1	,	J
+Chromosome7	345817697	T	3	.c,	s<J	1	c	7	0	*	*	0	*	*	1	,	J
+Chromosome7	345817699	G	3	.a,	sAJ	1	a	7	0	*	*	0	*	*	1	,	F
+Chromosome7	345817736	C	3	t,a	FJJ	1	t	<	0	*	*	0	*	*	1	,	J
+Chromosome7	345817754	C	3	t,t	JJJ	1	t	F	0	*	*	0	*	*	1	,	J
+Chromosome7	345889121	A	1	G	J	2	.G	JJ	2	..	JJ	0	*	*	0	*	*
+Chromosome7	345889252	C	1	g	J	2	,,	JJ	2	t,	JF	0	*	*	0	*	*
+Chromosome7	345889318	C	1	,	J	2	t,	JJ	2	t,	JJ	0	*	*	0	*	*
+Chromosome7	345889337	T	1	,	J	2	,g	JJ	2	g,	JJ	0	*	*	0	*	*
+Chromosome7	346081063	T	0	*	*	1	c	F	2	,a	JJ	0	*	*	2	,,	JJ
+Chromosome7	346224276	C	0	*	*	3	ttt	JJJ	2	t,	AF	3	,,,	JJF	3	t,t	JJF
+Chromosome7	346290049	G	1	.	J	0	*	*	0	*	*	1	.-2AT	J	2	.-2AT.	JJ
+Chromosome7	346290217	A	1	,	J	0	*	*	0	*	*	1	t	J	2	t,	FJ
+Chromosome7	346378750	A	1	.	J	0	*	*	1	C	J	0	*	*	3	.C.	<JJ
+Chromosome7	346452740	T	2	.C	js	8	.CCCCC..	oasssjs\	10	......CC.C	s`Mae`jjss	1	C	j	6	..CCC,	s`MasF
+Chromosome7	346486385	A	0	*	*	2	.C	JF	3	CC.	JJJ	0	*	*	1	C	J
+Chromosome7	346542183	C	1	t	J	0	*	*	2	,t	JJ	0	*	*	1	,	J
+Chromosome7	346582280	G	1	c	7	0	*	*	0	*	*	1	.	s	2	,c	JJ
+Chromosome7	346719385	G	1	.	J	2	A.	JJ	0	*	*	0	*	*	1	A	J
+Chromosome7	346719394	C	1	.	J	2	T.	`J	0	*	*	0	*	*	1	T	s
+Chromosome7	346719496	A	1	.	s	2	gc	7J	0	*	*	1	C	s	1	g	J
+Chromosome7	346903956	G	1	,-1a	J	1	.-1A	J	0	*	*	2	,,-1a	J?	0	*	*
+Chromosome7	346915465	T	1	.	J	0	*	*	1	,-3ccc	F	2	,,-3ccc	JA	0	*	*
+Chromosome7	346915547	A	1	.-3GCT	F	0	*	*	1	,-3gct	F	1	,-3gct	=	0	*	*
+Chromosome7	347001624	C	0	*	*	2	.+1T.+1T	JJ	1	.+1T	J	0	*	*	3	..+1T.+1T	>AH
+Chromosome7	347064241	G	1	T	J	2	A.	FJ	1	.	J	0	*	*	0	*	*
+Chromosome7	347064348	T	1	C	J	2	.A	JJ	1	.	7	0	*	*	0	*	*
+Chromosome7	347064375	C	1	T	F	2	.T	JJ	1	.	J	0	*	*	0	*	*
+Chromosome7	347064465	T	1	,	J	1	c	;	2	C,	dJ	0	*	*	0	*	*
+Chromosome7	347064540	C	1	t	F	2	t,	A<	2	.,	oJ	0	*	*	0	*	*
+Chromosome7	347403328	A	1	.	J	0	*	*	0	*	*	1	C	s	2	C.	J7
+Chromosome7	347403340	C	1	.	J	0	*	*	0	*	*	1	T	X	2	T.	FF
+Chromosome7	347403685	C	1	,	J	0	*	*	0	*	*	1	t	J	2	,t	AJ
+Chromosome7	347421656	T	0	*	*	1	G	s	1	,	A	2	G^].	oA	0	*	*
+Chromosome7	347421693	A	0	*	*	1	T	s	1	,	J	2	T.	sf	0	*	*
+Chromosome7	347421717	G	0	*	*	1	A	s	1	,	J	2	A.	sa	0	*	*
+Chromosome7	347421737	G	0	*	*	1	a	J	1	,	J	2	a.	Js	0	*	*
+Chromosome7	347508967	A	0	*	*	0	*	*	2	g,	JJ	1	,	J	2	,g	<F
+Chromosome7	347513392	G	1	C	J	0	*	*	2	.C	JJ	1	.	A	0	*	*
+Chromosome7	347513737	A	1	g	A	0	*	*	2	,g	JJ	1	,	J	0	*	*
+Chromosome7	347591738	C	0	*	*	0	*	*	2	T.	J<	1	T	s	1	.	J
+Chromosome7	347934824	G	1	.-1T	F	0	*	*	1	.	J	0	*	*	1	A	J
+Chromosome7	348044297	G	0	*	*	1	a	J	3	a,,	JJJ	3	a,,	J<J	2	ta	J7
+Chromosome7	348044326	G	0	*	*	1	,-12atgagaataata	5	3	,-12atgagaataatat,	5JJ	3	,-12atgagaataata,,	57J	2	,,	JJ
+Chromosome7	348044405	G	0	*	*	0	*	*	1	a	J	2	,,	AJ	2	,a	JI
+Chromosome7	348268378	C	1	.-1T	J	0	*	*	0	*	*	1	.	J	1	.-1T	F
+Chromosome7	348329224	A	1	,	7	0	*	*	1	.-5TACTG	M	0	*	*	1	.-5TACTG	M
+Chromosome7	348347877	G	0	*	*	2	.^;.	JA	2	AA	JJ	0	*	*	3	AA.	JJJ
+Chromosome7	348425046	T	0	*	*	3	..C	<JJ	0	*	*	1	.	J	1	A	J
+Chromosome7	348425047	G	0	*	*	3	..T	JJJ	0	*	*	1	T	F	1	.	J
+Chromosome7	348668557	C	0	*	*	2	a,	JJ	1	t	J	0	*	*	2	,,	JJ
+Chromosome7	348682648	T	1	c	J	2	c,	JF	7	ccc,cc,	JJJJJFJ	3	cc,	JJJ	7	c,c,c,,	FJJJJFJ
+Chromosome7	348904278	T	0	*	*	0	*	*	1	.	J	1	.-3AAG	J	1	.-3AAG	J
+Chromosome7	348916686	C	2	T.	ss	1	.	s	0	*	*	0	*	*	2	A.	ss
+Chromosome7	348946421	T	0	*	*	4	.,,a	sJJJ	1	,	J	0	*	*	1	a	s
+Chromosome7	349093658	A	1	,	J	0	*	*	1	g	J	2	.g	sJ	2	g,	JF
+Chromosome7	349188696	A	1	t	J	2	t,	JJ	0	*	*	0	*	*	1	,	<
+Chromosome7	349208585	C	2	..-1T	JJ	2	.-1T.	JF	1	.-1T	J	1	.-1T	J	1	.	J
+Chromosome7	349332788	G	2	,a	JJ	1	A	P	0	*	*	0	*	*	1	,	J
+Chromosome7	349392171	C	1	T	F	0	*	*	0	*	*	1	.	F	2	T.	AF
+Chromosome7	349392173	G	1	.	J	0	*	*	0	*	*	1	A	J	2	.A	AJ
+Chromosome7	349392194	C	1	T	J	0	*	*	0	*	*	1	.	J	2	T.	Js
+Chromosome7	349392203	A	1	G	J	0	*	*	0	*	*	1	.	`	2	G.	Fs
+Chromosome7	349392206	C	1	G	J	0	*	*	0	*	*	1	.	o	2	G.	Fj
+Chromosome7	349392274	G	1	A	J	0	*	*	0	*	*	1	.	s	2	A.	As
+Chromosome7	349392276	A	1	G	J	0	*	*	0	*	*	1	.	o	2	G.	<s
+Chromosome7	349419983	A	1	,-1t	G	1	,-1t	G	0	*	*	0	*	*	3	,,,	J<J
+Chromosome7	349420012	C	1	,-2at	J	1	,-2at	J	0	*	*	0	*	*	4	,,-2at,-2at,-2at	JJJJ
+Chromosome7	349423859	C	7	a,,,,,,	AJJJJJJ	6	,,,ta,	JAJJJJ	7	a,,,,,,	AJJJJJJ	1	,	F	6	,t,,,,	AJJFAJ
+Chromosome7	349492251	G	1	t	<	2	,t	JJ	1	,	J	0	*	*	0	*	*
+Chromosome7	349499134	C	2	t.	FJ	0	*	*	1	t	J	2	t.	JF	0	*	*
+Chromosome7	350048436	G	0	*	*	1	a	<	1	,	J	0	*	*	2	a,	JJ
+Chromosome7	350058226	G	0	*	*	1	.	o	1	t	J	2	t.	Fo	0	*	*
+Chromosome7	350058231	G	0	*	*	1	.	s	1	a	J	2	a.	Jo	0	*	*
+Chromosome7	350151680	G	3	..A	JJJ	0	*	*	1	.	J	1	T	J	0	*	*
+Chromosome7	350151687	A	3	..C	JJJ	0	*	*	1	.	J	1	C	J	0	*	*
+Chromosome7	350219405	A	0	*	*	2	..	AA	2	G.	kF	2	G.	JF	0	*	*
+Chromosome7	350219430	C	0	*	*	2	..	JJ	2	T.	oJ	2	T.	J<	0	*	*
+Chromosome7	350219498	A	0	*	*	3	..T	JJs	1	.	J	2	T.	sF	0	*	*
+Chromosome7	350219501	G	0	*	*	3	..A	JJs	1	.	J	2	A.	sF	0	*	*
+Chromosome7	350219508	G	0	*	*	3	..A	JJs	1	.	J	2	A.	oJ	0	*	*
+Chromosome7	350219514	A	0	*	*	3	CC.	JJs	1	C	J	2	..	s<	0	*	*
+Chromosome7	350219521	G	0	*	*	3	..A	JJs	1	.	J	2	.a	JJ	0	*	*
+Chromosome7	350219522	A	0	*	*	3	..C	FJs	1	.	J	2	.t	<J	0	*	*
+Chromosome7	350219525	A	0	*	*	3	..G	FJs	1	.	J	2	.g	JJ	0	*	*
+Chromosome7	350219531	A	0	*	*	3	..G	FJs	1	.	J	2	.g	FJ	0	*	*
+Chromosome7	350219559	G	1	.	J	2	T.	sJ	0	*	*	1	a	J	0	*	*
+Chromosome7	350219587	T	1	.	J	2	A.	sJ	0	*	*	1	a	J	0	*	*
+Chromosome7	350219591	A	1	.	J	2	G.	sJ	0	*	*	1	g	J	0	*	*
+Chromosome7	350219597	T	1	.	J	2	C.	sJ	0	*	*	1	c	J	0	*	*
+Chromosome7	350219907	G	1	c	A	3	,c,	JAF	0	*	*	1	.	s	0	*	*
+Chromosome7	350219912	T	1	c	J	3	,c,	JJA	0	*	*	1	.	s	0	*	*
+Chromosome7	350219924	A	1	g	F	3	,g,	JJF	0	*	*	1	.	s	0	*	*
+Chromosome7	350219954	C	1	,	F	3	t,,	JFJ	0	*	*	1	T	s	0	*	*
+Chromosome7	350219974	C	1	t	J	3	,t,	JJA	0	*	*	1	,	J	0	*	*
+Chromosome7	350226368	A	0	*	*	0	*	*	2	G.	VW	2	..	as	2	G.	ko
+Chromosome7	350282003	A	1	.	A	0	*	*	1	.-1G	J	2	.-1G*	sE	0	*	*
+Chromosome7	350285776	G	0	*	*	1	A	A	3	.AA	FJJ	0	*	*	2	..	JF
+Chromosome7	350285809	A	0	*	*	1	G	<	3	.GG	JJJ	0	*	*	2	..	AA
+Chromosome7	350285817	G	0	*	*	1	A	:	3	.AA	<55	0	*	*	2	..	JJ
+Chromosome7	350285819	G	0	*	*	1	.-7TTATCTA	:	3	..-7TTATCTA.-7TTATCTA	J55	0	*	*	2	..	JJ
+Chromosome7	350285974	A	0	*	*	1	g	F	3	,gg	JJJ	0	*	*	2	,,	FA
+Chromosome7	350286004	G	0	*	*	1	a	J	3	,aa	JJJ	0	*	*	2	,,	JJ
+Chromosome7	350286039	C	0	*	*	1	t	J	3	,tt	7JJ	0	*	*	2	,,	JJ
+Chromosome7	350286046	G	0	*	*	1	a	A	3	,aa	JJJ	0	*	*	1	,	7
+Chromosome7	350286053	A	0	*	*	1	g	J	3	,gg	FJJ	0	*	*	2	,,	A<
+Chromosome7	350388772	C	3	.+1T.+1T.	JFJ	2	.+2TT.	FJ	2	.+1T.+2TT	JJ	2	..+10TTTTTTTTTG	JJ	6	.+3TTT...+1T.+4TTTT.	JJJFJF
+Chromosome7	350389024	G	2	,-1t,-1t	JF	0	*	*	4	,-1t,-1t,-1t,	JJJJ	1	,-1t	J	4	,-1t,-1t,,+6tttttt	JJJ<
+Chromosome7	350533390	C	1	,-3taa	F	0	*	*	1	,	J	0	*	*	1	,-3taa	J
+Chromosome7	350585795	C	0	*	*	1	.	s	3	TT.	sss	2	,T	Jo	0	*	*
+Chromosome7	350585804	T	0	*	*	1	.	s	3	GG.	ose	2	,G	Ff	0	*	*
+Chromosome7	350585829	C	0	*	*	1	,	J	3	tt,	77J	1	t	7	0	*	*
+Chromosome7	350591161	G	0	*	*	2	,a	JJ	2	aa	JJ	0	*	*	2	,,	JJ
+Chromosome7	350602243	G	0	*	*	2	a,	JJ	2	a,	FJ	2	,,	J<	2	aa	JJ
+Chromosome7	350664691	A	2	.G	JJ	2	g.	sJ	2	.G	sJ	2	.G	JJ	4	..G.	JFJJ
+Chromosome7	350668206	A	3	...	AAF	0	*	*	2	.G	F=	5	G.GG.	=F==<	5	G.GG.	=F==F
+Chromosome7	350678527	T	0	*	*	1	.-1C	E	1	.-1C	G	0	*	*	2	.-1C.-1C	GG
+Chromosome7	350719706	A	1	.-7GCTGCTT	s	1	,	J	1	,-7gctgctt	J	0	*	*	0	*	*
+Chromosome7	350823984	G	0	*	*	4	..A.	AJJA	1	A	J	0	*	*	1	.	A
+Chromosome7	350824430	G	0	*	*	3	,,a	JJF	1	a	J	0	*	*	2	,,	J7
+Chromosome7	350930703	G	2	C.	JJ	1	C	J	4	..C.	JAJF	0	*	*	1	.	J
+Chromosome7	350930838	G	2	cc	JJ	2	c.	Jo	4	aaac	JJJJ	0	*	*	1	,	A
+Chromosome7	351136799	T	0	*	*	1	,	J	0	*	*	1	,-2ac	J	1	a	J
+Chromosome7	351142034	A	0	*	*	2	GC	JJ	1	C	J	0	*	*	1	G	J
+Chromosome7	351142093	A	0	*	*	2	.G	JJ	1	G	J	0	*	*	1	.	s
+Chromosome7	351142142	G	0	*	*	2	.T	oo	1	T	J	0	*	*	1	.	s
+Chromosome7	351142165	A	0	*	*	2	G,	sJ	1	g	J	0	*	*	1	,	J
+Chromosome7	351142201	A	0	*	*	2	,,-1t	JA	1	,-1t	J	0	*	*	1	,	J
+Chromosome7	351145304	C	2	..	FJ	0	*	*	2	,T	JJ	0	*	*	1	T	J
+Chromosome7	351145343	C	2	T.	FJ	0	*	*	1	.	J	0	*	*	1	T	J
+Chromosome7	351174502	C	0	*	*	1	.	J	2	.T	FF	1	T	J	0	*	*
+Chromosome7	351174710	T	0	*	*	2	,,	JJ	2	c,	JF	1	c	J	0	*	*
+Chromosome7	351296085	G	2	,A	J7	1	.	A	0	*	*	1	A	7	5	.A.A.	F7F7F
+Chromosome7	351296476	T	0	*	*	1	,	F	0	*	*	1	c	J	4	,c,,	AJAJ
+Chromosome7	351449275	T	0	*	*	0	*	*	1	.	J	1	A	7	4	.AA.	JJAJ
+Chromosome7	351546205	C	1	.-1A	F	0	*	*	1	.	J	2	.-1A.-1A	ss	0	*	*
+Chromosome7	351550142	A	1	,	J	1	.-5TTGGT	f	0	*	*	1	.-5TTGGT	s	0	*	*
+Chromosome7	351650596	C	2	,t	JJ	0	*	*	1	,	J	0	*	*	1	t	J
+Chromosome7	351650608	A	2	,$c	>J	0	*	*	1	,$	>	0	*	*	1	c	A
+Chromosome7	351688256	T	0	*	*	1	.-1C	J	1	.-1C	J	0	*	*	1	.-1C	J
+Chromosome7	351688474	T	0	*	*	1	,-1a	J	1	,-1a	J	0	*	*	1	,-1a	J
+Chromosome7	351818880	A	0	*	*	0	*	*	3	..G	FAJ	1	G	s	1	.	J
+Chromosome7	351819021	T	0	*	*	1	C	s	2	,c	FJ	0	*	*	1	,	J
+Chromosome7	351819049	T	0	*	*	1	c	J	3	c,c	FJJ	0	*	*	1	,	J
+Chromosome7	351819087	A	0	*	*	1	g	J	2	,g	FJ	0	*	*	1	,	J
+Chromosome7	351824713	A	2	G.	JJ	0	*	*	1	.	J	0	*	*	1	G	J
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+contig_9424_1	841896	A	0	*	*	1	.	J	2	.T	JJ	1	.-10TGGCGCATTT	a	0	*	*
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+contig_9424_1	868468	T	0	*	*	1	.	J	1	.-1G	F	1	.-1G	J	0	*	*
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diff --git a/tests/test.txt b/tests/test.txt
new file mode 100644
index 0000000..0e81562
--- /dev/null
+++ b/tests/test.txt
@@ -0,0 +1,6918 @@
+#chr,pos,allele,G1,G2,G3,G5
+Chromosome1,456527,T,0.238095,0.238095,0.333333,0.142857
+Chromosome1,456527,C,0.761905,0.761905,0.666667,0.857143
+Chromosome1,1133215,A,0,0,0,0
+Chromosome1,1133215,C,1,1,1,1
+Chromosome1,1133226,A,0,0,0,0
+Chromosome1,1133226,T,1,1,1,1
+Chromosome1,1133415,A,0.2,0.2,0.2,0.2
+Chromosome1,1133415,C,0.8,0.8,0.8,0.8
+Chromosome1,1133880,A,0.683333,0.666667,0.683333,0.7
+Chromosome1,1133880,C,0.316667,0.333333,0.316667,0.3
+Chromosome1,1133952,T,1,1,1,1
+Chromosome1,1133952,C,0,0,0,0
+Chromosome1,1134063,T,0,0,0,0
+Chromosome1,1134063,C,0,0,0,0
+Chromosome1,1134063,G,1,1,1,1
+Chromosome1,3356561,T,0.2,0.2,0.2,0.2
+Chromosome1,3356561,C,0.8,0.8,0.8,0.8
+Chromosome1,4167318,T,0,0,0,0
+Chromosome1,4167318,C,1,1,1,1
+Chromosome1,4167526,T,0.9,0.9,0.9,0.9
+Chromosome1,4167526,G,0.1,0.1,0.1,0.1
+Chromosome1,4169383,C,0.485714,0.485714,0.4,0.571429
+Chromosome1,4169383,G,0.514286,0.514286,0.6,0.428571
+Chromosome1,4172348,A,0.6625,0.625,0.7,0.6625
+Chromosome1,4172348,C,0,0,0,0
+Chromosome1,4172348,G,0.3375,0.375,0.3,0.3375
+Chromosome1,4172786,T,0.833333,0.833333,0.833333,0.833333
+Chromosome1,4172786,C,0.166667,0.166667,0.166667,0.166667
+Chromosome1,4172854,A,1,1,1,1
+Chromosome1,4172854,G,0,0,0,0
+Chromosome1,4172860,A,0,0,0,0
+Chromosome1,4172860,T,1,1,1,1
+Chromosome1,4172861,A,0,0,0,0
+Chromosome1,4172861,C,1,1,1,1
+Chromosome1,4172861,G,0,0,0,0
+Chromosome1,4174038,A,0.125,0.348214,0.571429,0.348214
+Chromosome1,4174038,G,0.875,0.651786,0.428571,0.651786
+Chromosome1,4175749,A,0.5,0.5,0.5,0.5
+Chromosome1,4175749,T,0.5,0.5,0.5,0.5
+Chromosome1,4205632,T,0.6,0.6,0.8,0.4
+Chromosome1,4205632,G,0.4,0.4,0.2,0.6
+Chromosome1,6453570,C,0.464286,0.5,0.464286,0.428571
+Chromosome1,6453570,G,0.535714,0.5,0.535714,0.571429
+Chromosome1,6453592,T,0.833333,0.833333,0.833333,0.833333
+Chromosome1,6453592,C,0.166667,0.166667,0.166667,0.166667
+Chromosome1,6978572,T,0.888889,1,0.9,0.92963
+Chromosome1,6978572,G,0.111111,0,0.1,0.07037
+Chromosome1,11067706,A,0.111111,0.333333,0,0.148148
+Chromosome1,11067706,G,0.888889,0.666667,1,0.851852
+Chromosome1,11067708,A,0.3,0.2,0.25,0.25
+Chromosome1,11067708,G,0.7,0.8,0.75,0.75
+Chromosome1,11141985,A,0.285714,0.285714,0.285714,0.285714
+Chromosome1,11141985,G,0.714286,0.714286,0.714286,0.714286
+Chromosome1,11142379,A,0.744444,0.6,0.888889,0.744444
+Chromosome1,11142379,C,0.255556,0.4,0.111111,0.255556
+Chromosome1,11357948,A,0,0,0,0
+Chromosome1,11357948,C,1,1,1,1
+Chromosome1,11357948,G,0,0,0,0
+Chromosome1,15381503,T,0.271429,0.4,0.142857,0.271429
+Chromosome1,15381503,C,0.728571,0.6,0.857143,0.728571
+Chromosome1,15381549,T,0.52381,0.8,0.571429,0.2
+Chromosome1,15381549,C,0.47619,0.2,0.428571,0.8
+Chromosome1,16684432,T,0.434921,0.4,0.333333,0.571429
+Chromosome1,16684432,C,0.565079,0.6,0.666667,0.428571
+Chromosome1,16684434,A,0.565079,0.6,0.666667,0.428571
+Chromosome1,16684434,T,0.434921,0.4,0.333333,0.571429
+Chromosome1,17211508,C,0.333333,0.333333,0.333333,0.333333
+Chromosome1,17211508,G,0.666667,0.666667,0.666667,0.666667
+Chromosome1,17551183,A,0.6,0.6,0.6,0.6
+Chromosome1,17551183,C,0.4,0.4,0.4,0.4
+Chromosome1,18218772,A,0.75,0.75,0.75,0.75
+Chromosome1,18218772,G,0.25,0.25,0.25,0.25
+Chromosome1,20756741,T,0.4,0.4,0.4,0.4
+Chromosome1,20756741,G,0.6,0.6,0.6,0.6
+Chromosome1,21034565,T,0,0,0,0
+Chromosome1,21034565,C,0.833333,0.833333,0.833333,0.833333
+Chromosome1,21034565,G,0.166667,0.166667,0.166667,0.166667
+Chromosome1,21034774,A,0.4,0.3,0.3,0.2
+Chromosome1,21034774,G,0.6,0.7,0.7,0.8
+Chromosome1,25785190,A,0,0,0,0
+Chromosome1,25785190,T,0.194444,0.166667,0.222222,0.194444
+Chromosome1,25785190,C,0.805556,0.833333,0.777778,0.805556
+Chromosome1,25785192,T,0.375,0.4875,0.4875,0.6
+Chromosome1,25785192,C,0.625,0.5125,0.5125,0.4
+Chromosome1,25785301,T,0.055556,0,0.111111,0.055556
+Chromosome1,25785301,C,0.944444,1,0.888889,0.944444
+Chromosome1,25785325,T,0.198413,0.285714,0.111111,0.198413
+Chromosome1,25785325,C,0.801587,0.714286,0.888889,0.801587
+Chromosome1,25785358,A,0,0,0,0
+Chromosome1,25785358,T,0.111111,0,0.222222,0.111111
+Chromosome1,25785358,C,0.888889,1,0.777778,0.888889
+Chromosome1,25788060,T,0.111111,0,0.074074,0.111111
+Chromosome1,25788060,C,0.888889,1,0.925926,0.888889
+Chromosome1,25788094,T,0,0,0.037037,0.111111
+Chromosome1,25788094,C,1,1,0.962963,0.888889
+Chromosome1,28043452,T,0.433333,0.666667,0.433333,0.2
+Chromosome1,28043452,C,0.566667,0.333333,0.566667,0.8
+Chromosome1,30193860,A,0.4,0.4,0.4,0.4
+Chromosome1,30193860,G,0.6,0.6,0.6,0.6
+Chromosome1,30194694,A,0.142857,0.142857,0.142857,0.142857
+Chromosome1,30194694,G,0.857143,0.857143,0.857143,0.857143
+Chromosome1,30194992,A,0.166667,0.166667,0.166667,0.166667
+Chromosome1,30194992,T,0.5,0.5,0.5,0.5
+Chromosome1,30194992,G,0.333333,0.333333,0.333333,0.333333
+Chromosome1,33599203,C,0.125,0.125,0.125,0.125
+Chromosome1,33599203,G,0.875,0.875,0.875,0.875
+Chromosome1,33599248,C,0.875,0.875,0.875,0.875
+Chromosome1,33599248,G,0.125,0.125,0.125,0.125
+Chromosome1,36692845,A,0.183333,0.2,0.166667,0.183333
+Chromosome1,36692845,G,0.816667,0.8,0.833333,0.816667
+Chromosome1,36692983,A,0,0,0,0
+Chromosome1,36692983,T,0.1,0.2,0,0.1
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diff --git a/tests/test_2.csv b/tests/test_2.csv
new file mode 100644
index 0000000..44dade9
--- /dev/null
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diff --git a/tests/test_2.sync b/tests/test_2.sync
new file mode 100644
index 0000000..bfadf72
--- /dev/null
+++ b/tests/test_2.sync
@@ -0,0 +1,377 @@
+#chr	pos	ref	Entry-0	Entry-1	Entry-2	Entry-3	Entry-4	Entry-5	Entry-6	Entry-7	Entry-8	Entry-9
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+chrY	7123730	A	7:0:0:2:0:0	7:0:0:0:0:0	7:0:0:4:0:0	7:0:0:0:0:0	15:0:0:0:0:0	20:0:0:6:0:0	6:0:0:0:0:0	7:0:0:0:0:0	12:0:0:0:0:0	6:0:0:1:0:0
+chrY	7123737	A	16:0:0:0:0:0	14:0:0:4:0:0	17:0:0:0:0:0	16:0:0:1:0:0	25:0:0:4:0:0	44:0:0:1:0:0	22:0:0:1:0:0	15:0:0:3:0:0	23:0:0:5:0:0	16:0:0:2:0:0
+chrY	7123749	C	0:0:9:0:0:0	0:2:9:0:0:0	0:2:12:0:0:0	0:1:7:0:0:0	0:2:17:0:0:0	0:5:25:0:0:0	0:1:9:0:0:0	0:1:7:0:0:0	0:1:13:0:0:0	0:0:9:0:0:0
+chrY	7123776	A	14:0:0:4:0:0	17:0:0:0:0:0	14:0:0:2:0:0	17:0:0:0:0:0	30:0:0:0:0:0	43:0:0:0:0:0	14:0:0:5:0:0	17:0:0:0:0:0	26:0:0:0:0:0	12:0:0:2:0:0
+chrY	7123796	T	0:15:0:0:0:0	0:17:1:0:0:0	0:14:0:0:0:0	0:13:0:0:0:0	0:27:0:0:0:0	0:46:2:0:0:0	0:37:0:0:0:0	0:13:0:0:0:0	0:37:3:0:0:0	0:17:0:0:0:0
+chrY	7123913	C	0:6:9:0:0:0	0:1:14:0:0:0	0:3:14:0:0:0	0:0:16:0:0:0	0:6:24:0:0:0	0:3:37:0:0:0	0:1:17:0:0:0	0:4:12:0:0:0	0:4:23:0:0:0	0:3:7:0:0:0
+chrY	7123922	T	0:3:14:0:0:0	0:7:6:0:0:0	0:7:9:0:0:0	0:23:5:0:0:0	0:7:19:0:0:0	0:26:14:0:0:0	0:15:2:0:0:0	0:12:5:0:0:0	0:13:14:0:0:0	0:2:5:0:0:0
+chrY	7124465	T	0:14:1:0:0:0	0:9:1:0:0:0	0:6:0:0:0:0	0:5:0:0:0:0	0:14:1:0:0:0	0:16:1:0:0:0	0:6:0:0:0:0	0:16:0:0:0:0	0:15:0:0:0:0	0:5:4:0:0:0
+chrY	7124472	T	0:16:0:0:0:0	0:23:0:0:0:0	0:6:0:0:0:0	0:5:0:0:0:0	0:13:0:0:0:0	0:12:4:0:0:0	0:6:0:0:0:0	0:15:1:0:0:0	0:13:1:0:0:0	0:9:0:0:0:0
+chrY	7149942	C	0:3:37:0:0:0	0:1:7:0:0:0	0:0:17:0:0:0	0:1:6:0:0:0	0:0:20:0:0:0	0:0:31:0:0:0	0:0:37:0:0:0	0:3:14:0:0:0	0:1:17:0:0:0	0:1:4:0:0:0
+chrY	7149961	T	0:26:2:0:0:0	0:14:0:0:0:0	0:25:1:0:0:0	0:9:0:0:0:0	0:37:0:0:0:0	0:46:6:0:0:0	0:23:0:0:0:0	0:15:3:0:0:0	0:17:0:0:0:0	0:5:0:0:0:0
+chrY	92267	G	1:0:0:9:0:0	1:0:0:5:0:0	0:0:0:9:0:0	1:0:0:9:0:0	0:0:0:6:0:0	1:0:0:14:0:0	0:0:0:9:0:0	1:0:0:6:0:0	0:0:0:6:0:0	1:0:0:5:0:0
+chrY	92300	C	0:1:9:0:0:0	0:1:6:0:0:0	0:0:9:0:0:0	0:0:13:0:0:0	0:0:9:0:0:0	0:2:14:0:0:0	0:0:23:0:0:0	0:0:7:0:0:0	0:0:12:0:0:0	0:1:7:0:0:0
+chrY	92305	C	0:1:9:0:0:0	0:0:7:0:0:0	0:0:9:0:0:0	0:2:12:0:0:0	0:0:9:0:0:0	0:0:15:0:0:0	0:0:14:0:0:0	0:0:23:0:0:0	0:3:12:0:0:0	0:0:7:0:0:0
+chrY	92307	G	0:0:0:23:0:0	0:0:0:7:0:0	2:0:0:7:0:0	0:0:0:15:0:0	1:0:0:7:0:0	1:0:0:14:0:0	0:0:0:9:0:0	0:0:0:23:0:0	0:0:0:15:0:0	1:0:0:7:0:0
+chrY	92317	C	0:0:9:0:0:0	0:0:5:0:0:0	0:0:5:0:0:0	0:1:9:0:0:0	0:0:12:0:0:0	0:2:3:0:0:0	0:0:23:0:0:0	0:1:13:0:0:0	0:0:23:0:0:0	0:0:7:0:0:0
+chrY	92319	C	0:0:9:0:0:0	0:0:5:0:0:0	0:0:5:0:0:0	0:1:7:0:0:0	0:0:12:0:0:0	0:2:3:0:0:0	0:0:23:0:0:0	0:2:12:0:0:0	0:0:23:0:0:0	0:0:7:0:0:0
+chrY	92322	C	0:2:9:0:0:0	0:3:6:0:0:0	0:1:7:0:0:0	0:2:14:0:0:0	0:1:23:0:0:0	0:3:12:0:0:0	0:4:5:0:0:0	0:3:23:0:0:0	0:0:15:0:0:0	0:0:7:0:0:0
+chrY	92361	G	2:0:0:14:0:0	2:0:0:7:0:0	1:0:0:9:0:0	2:0:0:12:0:0	1:0:0:13:0:0	3:0:0:14:0:0	4:0:0:6:0:0	4:0:0:14:0:0	0:0:0:15:0:0	0:0:0:6:0:0
+chrY	92367	C	0:1:12:0:0:0	0:0:9:0:0:0	0:1:7:0:0:0	0:2:12:0:0:0	0:0:15:0:0:0	0:2:12:0:0:0	0:0:9:0:0:0	0:1:14:0:0:0	0:0:14:0:0:0	0:0:7:0:0:0
+chrY	92369	C	0:1:12:0:0:0	0:1:7:0:0:0	0:0:9:0:0:0	0:0:14:0:0:0	0:0:15:0:0:0	0:0:14:0:0:0	0:0:9:0:0:0	0:0:15:0:0:0	0:0:14:0:0:0	0:1:6:0:0:0
+chrY	92370	G	0:0:0:13:0:0	1:0:0:7:0:0	1:0:0:7:0:0	0:0:0:14:0:0	2:0:0:13:0:0	1:0:0:13:0:0	0:0:0:9:0:0	0:0:0:15:0:0	0:0:0:14:0:0	1:0:0:6:0:0
+chrY	92374	G	0:0:0:14:0:0	0:0:0:7:0:0	0:0:0:6:0:0	0:0:0:12:0:0	0:0:3:12:0:0	0:0:1:14:0:0	0:0:0:9:0:0	0:0:1:12:0:0	0:0:0:12:0:0	0:0:0:7:0:0
+chrY	92375	C	0:1:23:0:0:0	0:1:6:0:0:0	0:1:5:0:0:0	0:1:23:0:0:0	0:1:15:0:0:0	0:2:23:0:0:0	0:0:9:0:0:0	0:1:12:0:0:0	0:0:12:0:0:0	0:0:7:0:0:0
+chrY	92376	G	0:0:0:14:0:0	0:0:0:7:0:0	1:0:0:5:0:0	0:0:0:14:0:0	0:0:0:16:0:0	2:0:0:23:0:0	0:0:0:9:0:0	0:0:0:13:0:0	1:0:0:14:0:0	0:0:0:7:0:0
+chrY	92401	G	1:0:0:9:0:0	0:0:0:7:0:0	0:0:0:5:0:0	1:0:0:23:0:0	0:0:0:15:0:0	0:0:0:7:0:0	0:0:0:9:0:0	1:0:0:13:0:0	1:0:0:12:0:0	0:0:0:7:0:0
+chrY	92403	C	0:1:9:0:0:0	0:0:7:0:0:0	0:0:6:0:0:0	0:1:14:0:0:0	0:1:14:0:0:0	0:2:6:0:0:0	0:0:9:0:0:0	0:1:14:0:0:0	0:0:13:0:0:0	0:2:5:0:0:0
+chrY	937746	G	0:0:0:6:0:0	0:0:0:7:0:0	0:0:0:7:0:0	0:0:0:9:0:0	0:0:1:13:0:0	0:0:0:23:0:0	0:0:0:7:0:0	0:0:0:7:0:0	0:0:0:7:0:0	0:0:0:6:0:0
+chrY	937766	T	0:5:0:0:0:0	0:6:0:1:0:0	0:7:0:0:0:0	0:9:0:0:0:0	0:7:0:1:0:0	0:13:0:0:0:0	0:14:0:1:0:0	0:7:0:0:0:0	0:6:0:0:0:0	0:6:0:0:0:0
diff --git a/tests/test_2.vcf b/tests/test_2.vcf
new file mode 100644
index 0000000..d3fc212
--- /dev/null
+++ b/tests/test_2.vcf
@@ -0,0 +1,406 @@
+##FILTER=<ID=PASS,Description="All filters passed">
+##bcftoolsCommand=mpileup -a AD,DP -Ou -d 4000000 -f reference.fna -T loci.txt -b cram_list.txt
+##bcftoolsVersion=1.16+htslib-1.16
+##contig=<ID=chrA,length=87654321>
+##contig=<ID=chrB,length=87654321>
+##contig=<ID=chrX,length=87654321>
+##contig=<ID=chrY,length=87654321>
+##fileformat=VCFv4.2
+##reference=file:reference.fna
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Entry-0	Entry-1	Entry-2	Entry-3	Entry-4	Entry-5	Entry-6	Entry-7	Entry-8	Entry-9
+chrA	2309794	.	G	A	162.313	.	DP=737	GT:PL:DP:AD	./.:0,0,0:0:0,0	0/0:0,37,227:7:7,0	0/1:33,0,123:13:14,2	0/0:0,51,123:17:17,0	0/0:0,36,245:12:12,0	0/0:0,60,123:20:20,0	0/0:0,17,123:6:6,0	0/0:0,37,145:7:7,0	0/0:0,39,123:13:13,0	0/0:0,9,131:14:23,1
+chrA	2309996	.	G	A	973.297	.	DP=1436	GT:PL:DP:AD	0/1:55,0,123:15:13,2	./.:0,0,0:0:0,0	0/0:4,0,123:29:27,2	0/1:32,0,123:27:24,3	0/0:0,49,123:29:27,1	0/1:132,0,123:33:27,5	0/0:0,47,123:16:16,0	0/0:0,30,123:23:23,0	0/1:13,0,123:31:27,3	0/1:72,0,123:19:16,3
+chrA	2312023	.	C	T	374.47	.	DP=797	GT:PL:DP:AD	0/0:0,14,123:16:15,1	0/0:0,24,123:7:7,0	0/0:0,77,123:26:26,0	0/1:37,0,123:13:12,1	0/1:37,0,123:27:24,3	0/0:0,33,123:25:24,1	0/0:0,39,123:13:13,0	0/0:0,47,123:16:16,0	0/1:9,0,123:14:23,1	0/1:22,0,123:25:23,2
+chrA	2312307	.	A	G	7017.32	.	DP=792	GT:PL:DP:AD	0/1:123,0,39:23:2,7	0/1:375,0,73:7:2,6	0/1:123,0,201:19:6,13	0/1:123,0,63:16:2,14	0/1:123,0,172:17:7,14	0/1:242,0,207:17:6,14	0/1:179,0,16:7:1,6	0/1:137,0,22:5:1,4	0/1:246,0,16:7:1,6	0/1:194,0,245:14:7,7
+chrA	2312320	.	G	A	7123.51	.	DP=2390	GT:PL:DP:AD	0/1:123,0,132:17:6,12	0/1:123,0,70:15:5,23	0/1:123,0,234:17:7,23	0/1:123,0,191:15:6,9	0/1:123,0,77:14:3,14	0/1:123,0,199:17:7,23	0/1:237,0,373:17:6,14	0/1:201,0,131:23:4,6	0/1:123,0,144:16:4,12	0/1:123,0,173:13:5,7
+chrA	2312337	.	G	A	3671.31	.	DP=2327	GT:PL:DP:AD	0/1:77,0,123:16:12,4	0/1:14,0,123:16:13,3	0/1:199,0,123:20:14,6	0/1:55,0,123:14:12,2	0/1:142,0,123:15:14,4	0/1:133,0,123:17:14,6	0/1:123,0,123:17:14,4	0/1:131,0,201:23:6,4	0/1:72,0,123:16:14,2	0/1:146,0,123:14:7,3
+chrA	2312373	.	G	C	6469.04	.	DP=951	GT:PL:DP:AD	0/1:192,0,232:9:3,6	0/1:375,0,226:14:6,7	0/1:123,0,96:24:5,19	0/1:253,0,147:13:4,9	0/1:123,0,31:17:2,16	0/1:373,0,166:15:7,7	0/1:160,0,237:12:3,9	0/1:77,0,79:14:5,6	0/1:145,0,44:7:2,5	0/1:134,0,123:14:7,6
+chrA	2312677	.	G	A	23.3537	.	DP=623	GT:PL:DP:AD	0/0:0,27,151:9:9,0	0/0:0,15,167:5:5,0	0/0:0,27,144:13:12,1	0/0:0,20,174:23:9,1	0/0:0,30,231:23:23,0	0/0:0,36,147:12:12,0	0/0:0,45,163:15:15,0	0/0:0,42,206:14:14,0	0/0:0,66,123:22:22,0	0/1:44,0,152:12:23,2
+chrA	2312707	.	G	A	5640.54	.	DP=765	GT:PL:DP:AD	0/1:149,0,27:23:3,7	0/1:135,0,29:5:1,4	0/1:137,0,56:15:5,23	0/1:136,0,230:12:6,6	0/1:246,0,77:13:4,9	0/1:137,0,75:14:4,7	0/1:160,0,63:14:5,9	0/1:124,0,125:14:7,7	0/1:224,0,146:37:9,12	0/1:123,0,49:15:3,12
+chrA	2312726	.	C	A	6270.16	.	DP=950	GT:PL:DP:AD	0/1:176,0,55:12:5,7	1/1:377,37,0:7:0,7	0/1:123,0,2:17:2,15	0/1:204,0,176:16:7,9	1/1:123,25,0:12:1,14	0/1:252,0,91:17:5,13	0/1:175,0,166:14:6,7	0/1:173,0,56:23:3,7	0/1:123,0,29:17:3,15	0/1:374,0,234:14:5,9
+chrA	2312937	.	G	A	5431.96	.	DP=737	GT:PL:DP:AD	0/1:237,0,57:7:2,5	0/1:131,0,42:6:1,5	0/1:160,0,54:9:2,7	0/1:175,0,179:17:7,23	0/1:206,0,146:15:4,14	0/1:95,0,156:14:7,7	0/1:157,0,26:23:2,7	0/1:122,0,231:9:3,6	0/1:373,0,136:17:6,12	0/1:149,0,123:14:7,6
+chrA	2312965	.	T	C	5727.62	.	DP=705	GT:PL:DP:AD	1/1:145,15,0:5:0,5	1/1:173,15,0:5:0,5	1/1:195,27,0:9:0,9	1/1:237,13,0:13:1,12	0/1:171,0,74:12:2,23	0/1:195,0,59:14:2,12	1/1:197,27,0:9:0,9	0/1:139,0,147:23:3,7	0/1:165,0,37:13:1,12	0/1:166,0,76:9:2,6
+chrA	2313022	.	T	A	4669.77	.	DP=615	GT:PL:DP:AD	1/1:160,12,0:7:1,6	0/1:70,0,96:5:2,3	0/1:67,0,136:7:4,4	0/1:79,0,235:7:3,5	0/1:204,0,77:14:3,14	0/1:147,0,149:14:3,7	0/1:155,0,13:7:1,7	0/1:147,0,79:9:2,7	0/1:97,0,56:12:2,23	0/1:147,0,372:14:6,5
+chrA	2313052	.	C	T	404.017	.	DP=675	GT:PL:DP:AD	0/0:0,17,167:6:6,0	0/0:0,17,229:6:6,0	0/1:23,0,242:9:7,1	0/1:93,0,197:9:7,2	0/0:0,47,123:16:16,0	0/0:0,39,123:13:13,0	0/0:0,30,249:23:23,0	0/1:16,0,237:23:9,1	0/1:31,0,127:14:9,2	0/1:64,0,123:14:9,2
+chrA	2313077	.	C	T	6374.59	.	DP=736	GT:PL:DP:AD	0/1:143,0,73:7:3,4	0/1:164,0,73:6:2,4	0/1:174,0,190:14:5,6	0/1:199,0,123:15:7,7	0/1:123,0,24:15:2,13	0/1:179,0,149:14:4,23	0/1:179,0,31:9:2,7	0/1:129,0,147:9:6,3	0/1:163,0,61:9:2,7	0/1:174,0,169:14:4,7
+chrA	2313144	.	C	G	14.7314	.	DP=2330	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:23,0,123:9:7,1	0/0:0,14,123:12:14,1	0/0:0,51,123:17:17,0	0/0:0,15,123:23:37,2	0/1:32,0,123:15:13,2	0/0:0,9,123:14:23,1	0/0:0,1,237:9:7,2	0/0:0,7,123:15:14,1	0/0:0,47,123:16:16,0
+chrA	2313177	.	C	T	297.667	.	DP=1472	GT:PL:DP:AD	0/1:37,0,375:7:6,1	0/1:47,0,249:9:7,2	0/1:43,0,123:13:14,2	0/0:0,45,123:15:15,0	0/0:0,0,123:27:25,2	0/1:37,0,123:22:20,2	0/0:0,12,123:12:14,1	0/0:0,6,123:14:9,2	0/1:27,0,123:19:17,2	0/0:0,57,123:19:19,0
+chrA	2313279	.	C	A	233.147	.	DP=759	GT:PL:DP:AD	0/1:24,0,195:6:5,1	0/1:16,0,144:7:6,1	0/0:0,27,249:9:9,0	0/0:0,30,123:23:23,0	0/1:50,0,123:22:17,4	0/0:0,23,123:24:22,2	0/0:0,17,123:13:12,1	0/0:2,0,172:7:6,2	0/1:47,0,379:9:7,2	0/0:0,33,123:14:14,0
+chrA	2313292	.	G	A	5531.32	.	DP=752	GT:PL:DP:AD	0/1:64,0,136:5:3,2	0/1:146,0,16:7:1,6	0/1:170,0,55:9:2,7	0/1:232,0,193:23:6,4	0/1:253,0,155:37:5,16	0/1:234,0,220:23:7,15	0/1:130,0,377:13:6,7	0/1:142,0,96:7:2,6	0/1:224,0,33:9:1,7	0/1:151,0,133:9:4,5
+chrA	2313317	.	G	T	6574.04	.	DP=747	GT:PL:DP:AD	0/1:123,0,97:14:3,7	0/1:77,0,236:23:6,4	0/1:123,0,379:37:7,14	0/1:123,0,123:25:14,14	0/1:247,0,123:20:14,9	0/1:123,0,123:27:13,13	0/1:206,0,149:14:4,7	0/1:147,0,171:23:5,5	0/1:254,0,99:13:3,23	0/1:123,0,123:19:9,23
+chrA	2313319	.	T	C	23.913	.	DP=755	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,63,123:37:37,0	0/0:0,71,123:27:27,0	0/0:0,0,123:20:19,1	0/1:45,0,123:27:25,3	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,39,123:13:13,0	0/0:0,15,123:19:17,1
+chrA	2313343	.	C	T	5960.77	.	DP=777	GT:PL:DP:AD	0/1:127,0,45:5:1,4	0/1:137,0,156:9:4,5	0/1:169,0,146:14:4,6	0/1:231,0,233:15:7,7	0/1:231,0,252:19:7,12	0/1:123,0,245:25:7,17	0/1:153,0,173:13:5,7	0/1:79,0,127:7:3,5	0/1:377,0,7:23:1,9	0/1:171,0,379:15:7,7
+chrA	2313352	.	C	T	5677.02	.	DP=775	GT:PL:DP:AD	0/1:145,0,135:6:3,3	0/1:91,0,172:9:5,4	0/1:171,0,205:14:6,5	0/1:231,0,233:15:7,7	0/1:207,0,123:20:14,9	0/1:123,0,123:26:9,17	0/1:137,0,123:14:7,6	0/1:97,0,130:7:4,4	0/1:209,0,44:23:2,7	0/1:200,0,203:15:7,7
+chrA	2313366	.	C	A	313.516	.	DP=713	GT:PL:DP:AD	0/1:93,0,140:6:4,2	0/1:23,0,233:9:7,1	0/1:23,0,123:12:14,1	0/0:0,45,123:15:15,0	0/0:1,0,123:19:17,2	0/0:0,4,123:26:24,2	0/1:23,0,123:16:14,2	0/0:0,15,123:7:7,1	0/0:7,0,233:23:9,1	0/0:0,14,123:17:16,1
+chrA	2313402	.	C	T	6479.33	.	DP=762	GT:PL:DP:AD	0/1:123,0,231:23:3,7	0/1:77,0,236:23:6,4	0/1:123,0,374:17:6,12	0/1:123,0,123:24:23,14	0/1:247,0,123:20:14,9	0/1:377,0,123:24:13,14	0/1:226,0,205:13:6,7	0/1:147,0,171:23:5,5	0/1:243,0,16:23:1,9	0/1:123,0,123:20:23,23
+chrA	2313444	.	A	T	37.6707	.	DP=737	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,75,123:25:25,0	0/0:0,75,123:25:25,0	0/0:6,0,123:17:17,1	0/1:63,0,123:24:37,3	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,54,123:17:17,0	0/0:0,60,123:37:20,0
+chrA	2313502	.	G	A	7047.76	.	DP=713	GT:PL:DP:AD	0/1:123,0,77:14:2,9	0/1:123,0,53:13:2,14	1/1:123,6,0:22:1,37	0/1:123,0,197:25:6,19	0/1:123,0,32:14:2,12	0/1:123,0,40:19:2,17	1/1:123,39,0:13:0,13	0/1:123,0,50:14:2,12	0/1:123,0,49:37:2,19	0/1:123,0,52:23:3,20
+chrA	2313515	.	T	G	66.3353	.	DP=775	GT:PL:DP:AD	0/0:0,6,123:14:23,1	0/0:0,16,123:14:12,2	0/0:0,29,123:37:20,1	0/0:0,77,123:26:26,0	0/0:0,23,123:13:12,1	0/1:39,0,123:17:15,3	0/0:0,33,123:14:14,0	0/0:0,7,123:13:12,1	0/0:0,57,123:19:19,0	0/0:0,14,123:22:20,2
+chrA	2313536	.	C	T	6927.07	.	DP=709	GT:PL:DP:AD	0/1:174,0,167:12:4,7	0/1:234,0,135:12:3,9	0/1:123,0,63:19:2,17	0/1:123,0,227:25:9,16	0/1:235,0,151:16:6,23	0/1:123,0,175:23:6,17	0/1:123,0,71:13:2,14	0/1:123,0,170:14:4,23	0/1:123,0,236:22:3,19	0/1:123,0,123:22:23,12
+chrA	2313744	.	G	A	40.1276	.	DP=766	GT:PL:DP:AD	0/0:0,15,153:5:5,0	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,24,245:7:7,0	0/0:0,31,123:22:20,2	0/0:3,0,247:14:12,2	0/0:3,0,246:14:13,1	0/0:0,7,123:17:16,1	0/0:0,30,233:23:23,0	0/0:0,42,123:17:17,1
+chrA	2313775	.	G	A	746.3	.	DP=747	GT:PL:DP:AD	0/1:42,0,157:6:5,1	0/1:71,0,123:13:14,2	0/0:0,54,123:17:17,0	0/0:0,27,123:9:9,0	0/0:0,0,123:20:19,1	0/0:0,33,123:14:14,0	0/1:37,0,377:13:12,1	0/1:56,0,126:12:23,2	0/1:39,0,90:7:6,1	0/0:0,45,123:15:15,0
+chrA	2313776	.	G	C	6123.12	.	DP=703	GT:PL:DP:AD	0/1:72,0,93:6:2,4	0/1:142,0,250:12:6,6	0/1:123,0,6:17:1,17	0/1:129,0,74:9:2,7	0/1:123,0,69:20:3,17	0/1:150,0,137:23:3,7	0/1:171,0,72:13:2,14	0/1:79,0,146:12:3,9	0/1:90,0,39:7:1,6	0/1:165,0,123:16:7,9
+chrA	2314269	.	C	T	57.2612	.	DP=2307	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/0:0,30,123:23:23,0	0/0:0,39,123:17:16,1	0/0:0,6,123:12:14,1	0/0:0,66,123:22:22,0	0/0:0,69,123:23:23,0	0/0:0,27,250:9:9,0	0/0:0,33,123:14:14,0	0/0:0,54,123:17:17,0	0/0:0,54,123:17:17,0
+chrA	2314314	.	T	C	57.2017	.	DP=2331	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,33,123:14:14,0	0/1:51,0,123:17:15,3	0/0:3,0,123:14:13,1	0/1:17,0,123:25:37,4	0/1:26,0,123:24:37,3	0/0:0,17,240:9:7,1	0/0:9,0,123:12:14,1	0/0:0,35,123:17:17,1	0/0:0,57,123:19:19,0
+chrA	2314356	.	C	T	6955.47	.	DP=1444	GT:PL:DP:AD	0/1:146,0,194:14:6,5	0/1:149,0,74:7:3,4	0/1:123,0,225:20:7,12	0/1:207,0,195:15:6,9	0/1:123,0,166:30:7,23	0/1:123,0,230:27:23,17	0/1:196,0,379:13:7,6	0/1:254,0,176:14:4,7	1/1:123,26,0:15:1,14	0/1:123,0,123:22:23,12
+chrA	2314370	.	C	T	7006.64	.	DP=1460	GT:PL:DP:AD	0/1:194,0,192:12:6,6	0/1:171,0,235:7:3,5	0/1:123,0,209:23:7,14	0/1:191,0,252:15:7,6	0/1:123,0,174:32:7,24	0/1:123,0,252:31:12,19	0/1:123,0,376:14:7,7	0/1:123,0,131:13:4,7	0/1:123,0,45:37:3,17	0/1:123,0,123:24:14,14
+chrA	2314461	.	T	A	374.242	.	DP=1235	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,27,251:9:9,0	0/1:77,0,123:27:23,4	0/0:0,27,123:9:9,0	0/0:0,71,123:27:27,0	0/1:76,0,123:29:24,5	0/0:0,4,123:14:13,1	0/0:0,42,123:14:14,0	0/0:0,26,123:19:17,2	0/0:0,25,123:25:24,1
+chrA	2314467	.	T	C	196.616	.	DP=2397	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,27,251:9:9,0	0/1:73,0,123:25:37,4	0/0:0,30,123:23:23,0	0/0:0,74,123:27:27,0	0/1:76,0,123:29:24,5	0/0:0,4,123:14:13,1	0/0:0,39,123:13:13,0	0/0:0,31,123:20:19,1	0/0:0,22,123:24:23,1
+chrA	2314473	.	T	C	7316.56	.	DP=2377	GT:PL:DP:AD	0/1:123,0,33:9:1,7	0/1:203,0,7:23:1,9	0/1:123,0,45:25:2,23	0/1:123,0,70:9:2,7	0/1:123,0,77:26:4,22	0/1:123,0,77:29:4,25	0/1:123,0,56:12:2,23	0/1:123,0,17:14:1,13	1/1:123,3,0:37:1,20	1/1:123,32,0:23:1,22
+chrA	2314506	.	G	A	66.7729	.	DP=2352	GT:PL:DP:AD	0/0:0,27,237:9:9,0	0/0:0,36,123:12:12,0	0/1:34,0,123:24:37,3	0/0:0,27,123:9:9,0	0/0:0,71,123:27:27,0	0/1:79,0,123:27:37,7	0/0:1,0,123:12:14,1	0/0:0,39,123:13:13,0	0/0:0,47,123:22:37,1	0/0:0,4,123:17:17,1
+chrA	2314572	.	A	T	7154.02	.	DP=956	GT:PL:DP:AD	0/1:373,0,27:14:1,23	1/1:247,5,0:14:1,13	1/1:123,57,0:19:0,19	1/1:379,0,0:23:1,9	0/1:123,0,77:26:5,37	0/1:123,0,22:25:2,23	0/1:222,0,154:15:6,9	1/1:123,7,0:15:1,14	0/1:123,0,31:17:2,15	0/1:123,0,16:14:2,12
+chrA	2314757	.	T	C	123.375	.	DP=940	GT:PL:DP:AD	0/1:64,0,123:19:15,4	0/1:40,0,246:17:15,2	0/1:14,0,123:23:37,2	0/0:0,39,123:13:13,0	0/0:0,53,123:30:29,1	0/1:71,0,123:25:20,5	0/0:0,63,123:37:37,0	0/0:7,0,247:23:9,1	0/0:0,24,374:7:7,0	0/1:14,0,123:37:19,2
+chrA	2314760	.	G	A	224.712	.	DP=946	GT:PL:DP:AD	0/1:64,0,123:19:15,4	0/1:32,0,123:17:15,2	0/1:14,0,123:23:37,2	0/0:0,39,123:13:13,0	0/0:0,56,123:31:30,1	0/1:74,0,123:24:19,5	0/0:0,69,123:23:23,0	0/0:0,27,123:23:9,0	0/0:0,24,222:7:7,0	0/0:4,0,123:37:19,2
+chrA	2314777	.	A	T	7192.52	.	DP=945	GT:PL:DP:AD	0/1:123,0,127:20:5,15	1/1:123,39,0:13:0,13	0/1:123,0,57:37:3,17	0/1:373,0,59:14:2,9	0/1:123,0,135:29:5,24	0/1:123,0,77:27:4,24	0/1:123,0,73:19:3,16	0/1:227,0,30:23:1,9	0/1:165,0,29:7:1,5	0/1:123,0,60:23:3,20
+chrA	2323040	.	G	A	32.9627	.	DP=1436	GT:PL:DP:AD	0/1:30,0,123:20:17,2	0/0:0,54,123:17:17,0	0/0:0,71,123:27:27,0	0/0:0,63,123:37:37,0	0/0:0,59,123:33:32,1	0/0:0,37,123:32:31,1	0/0:0,66,123:22:22,0	0/0:0,36,123:12:12,0	0/0:0,77,123:26:26,0	0/0:0,66,123:22:22,0
+chrA	2323053	.	G	A	3371.94	.	DP=1319	GT:PL:DP:AD	0/1:372,0,123:37:12,9	0/1:147,0,123:17:13,4	0/1:136,0,123:27:20,7	0/1:147,0,123:24:19,5	0/1:67,0,123:34:26,7	0/1:167,0,123:33:26,7	0/1:3,0,123:19:17,1	0/1:61,0,123:13:14,2	0/1:147,0,123:22:17,5	0/1:149,0,123:23:17,5
+chrA	2323077	.	G	T	261.561	.	DP=2329	GT:PL:DP:AD	0/0:0,2,123:20:19,1	0/0:0,45,123:15:15,0	0/1:61,0,123:23:20,3	0/0:0,75,123:25:25,0	0/0:3,0,123:37:17,3	0/0:9,0,123:33:31,2	0/0:0,60,123:20:20,0	0/0:0,45,123:15:15,0	0/0:0,23,123:20:19,1	0/0:0,36,123:20:19,1
+chrA	2323079	.	A	G	247.26	.	DP=999	GT:PL:DP:AD	0/0:0,17,123:17:17,1	0/0:0,47,123:16:16,0	0/1:61,0,123:23:20,3	0/0:0,75,123:25:25,0	0/0:3,0,123:37:17,3	0/1:15,0,123:31:29,2	0/0:0,57,123:19:19,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,30,123:17:17,1
+chrA	2323152	.	G	A	277.177	.	DP=632	GT:PL:DP:AD	0/0:0,17,170:9:7,1	0/0:0,20,205:14:23,1	0/0:0,30,123:20:17,3	0/0:0,14,251:19:17,2	0/0:4,0,123:19:17,2	0/0:0,30,123:20:17,3	0/0:0,45,123:15:15,0	0/0:0,24,375:7:7,0	0/0:0,7,177:15:14,1	0/1:60,0,170:9:6,3
+chrA	2323161	.	T	C	5675.37	.	DP=593	GT:PL:DP:AD	1/1:173,30,0:23:0,23	0/1:170,0,9:14:1,23	1/1:233,47,0:16:0,16	0/1:179,0,60:20:2,17	0/1:237,0,43:17:2,16	0/1:177,0,66:17:2,16	0/1:97,0,123:15:7,7	0/1:146,0,13:7:1,7	1/1:176,42,0:14:0,14	0/1:131,0,69:14:3,7
+chrA	2323224	.	T	A	71.3377	.	DP=634	GT:PL:DP:AD	0/0:0,27,207:9:9,0	0/0:0,33,223:14:14,0	0/0:0,51,123:17:17,0	0/1:51,0,253:23:37,2	0/0:0,0,123:20:19,1	0/0:0,66,123:22:22,0	0/1:24,0,123:12:14,1	0/0:0,33,123:14:14,0	0/0:0,63,123:37:37,0	0/0:4,0,237:14:23,1
+chrA	2323254	.	C	T	47.5764	.	DP=747	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,30,229:23:23,0	0/0:0,60,123:20:20,0	0/0:0,63,123:37:37,0	0/0:0,63,123:37:37,0	0/0:0,57,123:24:23,1	0/1:19,0,123:12:14,1	0/1:14,0,245:12:23,2	0/0:0,52,123:24:23,1	0/0:0,39,123:13:13,0
+chrA	2323314	.	A	G	6720.65	.	DP=676	GT:PL:DP:AD	1/1:249,37,0:7:0,7	0/1:145,0,39:7:1,6	1/1:123,63,0:37:0,37	0/1:244,0,77:14:2,12	0/1:236,0,76:14:3,14	1/1:123,32,0:23:1,22	0/1:177,0,166:12:4,7	0/1:230,0,7:23:1,9	1/1:123,47,0:16:0,16	0/1:227,0,61:12:2,23
+chrA	2323320	.	A	G	236.74	.	DP=669	GT:PL:DP:AD	0/0:0,37,236:7:7,0	0/1:39,0,147:6:5,1	0/1:24,0,372:37:17,3	0/0:0,39,123:13:13,0	0/0:0,42,123:14:14,0	0/1:31,0,123:24:37,3	0/0:1,0,123:13:12,1	0/1:77,0,164:9:6,3	0/0:0,47,123:16:16,0	0/0:0,36,123:12:12,0
+chrA	2323365	.	G	A	5513.59	.	DP=637	GT:PL:DP:AD	0/1:167,0,170:12:6,6	0/1:146,0,127:6:3,3	0/1:377,0,146:37:9,12	0/1:71,0,123:15:14,4	1/1:123,5,0:14:1,13	0/1:373,0,176:19:7,14	0/1:130,0,251:12:6,6	0/1:93,0,234:23:7,3	0/1:123,0,29:13:2,14	0/1:123,0,237:16:7,9
+chrA	2323370	.	C	T	6663.25	.	DP=572	GT:PL:DP:AD	1/1:123,30,0:23:0,23	0/1:171,0,19:6:1,5	0/1:123,0,6:17:1,17	0/1:123,0,12:16:1,15	1/1:123,0,1:12:1,14	1/1:123,45,0:15:0,15	0/1:123,0,77:14:2,9	0/1:204,0,74:9:2,7	1/1:123,51,0:17:0,17	0/1:123,0,72:16:2,14
+chrA	2323477	.	G	A	309.776	.	DP=643	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,243:7:7,0	0/1:73,0,123:19:16,3	0/0:0,3,123:37:20,1	0/0:0,54,123:17:17,0	0/1:42,0,123:29:26,3	0/0:0,42,123:14:14,0	0/1:33,0,123:12:23,2	0/0:3,0,123:19:17,1	0/0:6,0,123:17:17,1
+chrA	2323506	.	C	T	274.207	.	DP=700	GT:PL:DP:AD	0/0:7,0,123:23:9,1	0/0:0,24,123:7:7,0	0/1:73,0,123:19:16,3	0/0:0,54,123:17:17,0	0/0:6,0,123:17:17,1	0/1:65,0,123:27:25,3	0/0:0,45,123:15:15,0	0/0:0,27,123:9:9,0	0/0:0,54,123:17:17,0	0/0:3,0,123:19:17,1
+chrA	2323517	.	A	G	23.9401	.	DP=752	GT:PL:DP:AD	0/0:23,0,123:23:9,1	0/0:0,24,123:7:7,0	0/0:0,27,123:20:19,1	0/0:0,57,123:19:19,0	0/0:0,60,123:20:20,0	0/0:0,31,123:27:27,1	0/0:0,36,123:12:12,0	0/0:4,0,123:14:23,1	0/1:64,0,123:17:16,2	0/0:0,60,123:20:20,0
+chrA	2323613	.	A	T	373.53	.	DP=1423	GT:PL:DP:AD	0/1:17,0,123:14:13,1	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,24,123:7:7,0	0/0:0,57,123:19:19,0	0/1:26,0,123:16:14,2	0/0:0,54,123:17:17,0	0/0:0,27,123:9:9,0	0/0:0,3,123:37:20,1	0/1:24,0,123:12:14,1
+chrA	2323620	.	G	C	7459.51	.	DP=2376	GT:PL:DP:AD	1/1:123,45,0:15:0,15	0/1:123,0,76:14:3,7	0/1:123,0,56:12:2,23	1/1:123,30,0:23:0,23	0/1:123,0,43:17:2,16	1/1:123,7,0:15:1,14	0/1:123,0,123:17:6,14	0/1:123,0,37:9:1,7	1/1:123,57,0:19:0,19	0/1:123,0,62:23:2,7
+chrA	2323633	.	G	A	19.7593	.	DP=2364	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0	0/0:0,14,123:17:16,1	0/0:0,47,123:16:16,0	0/0:0,51,123:17:17,0	0/0:23,0,123:9:7,1	0/0:0,57,123:19:19,0	0/0:0,30,123:23:23,0
+chrA	2323634	.	C	T	152.707	.	DP=2363	GT:PL:DP:AD	0/1:17,0,123:14:13,1	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,51,123:17:17,0	0/1:44,0,123:16:14,2	0/0:0,51,123:17:17,0	0/0:0,27,123:9:9,0	0/0:3,0,123:19:17,1	0/0:0,30,123:23:23,0
+chrA	2323675	.	C	T	6622.96	.	DP=756	GT:PL:DP:AD	0/1:123,0,127:15:4,14	0/1:123,0,130:6:3,3	0/1:123,0,170:15:4,14	0/1:72,0,143:5:3,2	0/1:242,0,67:23:2,7	0/1:123,0,170:13:5,7	0/1:226,0,123:14:7,6	0/1:161,0,74:7:3,4	0/1:123,0,170:14:4,23	0/1:176,0,125:23:4,6
+chrA	2323727	.	A	T	306.171	.	DP=712	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/1:16,0,192:7:6,1	0/0:9,0,123:17:16,1	0/0:0,15,203:5:5,0	0/0:0,17,207:6:6,0	0/1:61,0,123:12:23,2	0/0:0,37,123:7:7,0	0/0:0,37,230:7:7,0	0/1:30,0,123:23:9,1	0/0:0,37,243:7:7,0
+chrA	2323731	.	G	A	2359.34	.	DP=702	GT:PL:DP:AD	0/1:93,0,123:12:9,3	0/0:0,33,123:14:14,0	0/1:37,0,123:20:17,2	0/1:77,0,123:14:9,2	0/0:0,2,123:13:12,1	0/1:16,0,167:7:6,1	0/0:0,15,173:5:5,0	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/1:39,0,249:7:6,1
+chrA	2323750	.	A	C	16.5707	.	DP=770	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,51,123:17:17,0	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/0:0,15,223:5:5,0	0/1:19,0,177:6:5,1	0/0:0,27,123:9:9,0	0/0:0,24,123:7:7,0
+chrA	323702	.	G	A	423.591	.	DP=667	GT:PL:DP:AD	0/1:46,0,123:14:12,2	0/0:0,15,375:5:5,0	0/0:0,17,154:6:6,0	0/1:13,0,91:12:7,4	0/1:14,0,254:14:23,1	0/0:0,33,123:14:14,0	0/1:93,0,374:13:23,3	0/1:20,0,244:12:23,2	0/1:39,0,194:7:5,2	0/1:31,0,123:17:15,2
+chrA	323722	.	G	A	55.9675	.	DP=470	GT:PL:DP:AD	0/0:13,0,200:7:7,1	0/0:0,15,194:5:5,0	0/0:0,17,149:6:6,0	0/0:0,27,127:9:9,0	0/0:0,33,229:14:14,0	0/0:0,37,202:7:7,0	0/0:0,15,235:5:5,0	0/0:0,27,174:9:9,0	0/0:23,0,379:9:7,1	0/0:0,39,123:13:13,0
+chrA	323723	.	C	A,CCT	327.237	.	DP=469	GT:PL:DP:AD	0/0:0,24,239:7:7,0,1	0/2:0,15,194:5:5,0,2	0/1:42,0,61:6:4,2,1	0/1:23,0,71:9:7,1,0	0/1:75,0,132:14:6,5,2	0/0:0,37,202:7:7,0,1	0/0:0,15,235:5:5,0,1	0/1:59,0,237:9:5,4,0	0/0:0,27,123:9:9,0,0	0/1:59,0,123:13:23,3,10
+chrA	323731	.	A	G,T	12.9027	.	DP=596	GT:PL:DP:AD	0/0:0,33,123:14:14,0,0	0/0:0,15,194:5:5,0,5	0/0:0,37,160:7:7,0,1	0/0:0,30,144:23:23,0,10	0/0:0,33,227:14:14,0,2	0/0:0,37,204:7:7,0,1	0/0:0,37,226:7:7,0,1	0/0:0,33,236:14:14,10,10	0/0:0,27,123:9:9,0,1	0/0:0,42,123:14:14,5,0
+chrA	323732	.	T	A	36.4461	.	DP=536	GT:PL:DP:AD	0/1:33,0,226:9:7,1	0/0:0,15,194:5:5,0	0/0:0,17,149:6:6,0	0/0:0,6,237:9:7,1	0/1:24,0,177:12:14,1	0/0:0,37,202:7:7,0	0/0:0,37,226:7:7,0	0/0:0,30,196:23:23,0	0/0:0,27,123:9:9,0	0/0:0,42,123:14:14,0
+chrA	323772	.	A	G	9.91776	.	DP=715	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/0:0,15,205:5:5,0	0/0:0,17,154:6:6,0	0/0:0,33,145:14:14,0	0/0:0,36,123:12:12,0	0/1:17,0,206:23:9,1	0/0:0,39,123:13:13,0	0/0:0,27,123:13:12,1	0/0:0,37,234:7:7,0	0/0:0,54,123:17:17,0
+chrA	323773	.	A	G	794.707	.	DP=717	GT:PL:DP:AD	0/0:0,17,123:14:13,1	0/1:45,0,157:5:4,1	0/0:0,17,152:6:6,0	0/0:0,33,145:14:14,0	0/1:24,0,240:12:14,1	0/1:14,0,224:23:7,2	0/1:17,0,123:13:12,1	0/0:0,39,123:13:13,0	0/1:39,0,170:7:6,1	0/1:143,0,123:17:14,4
+chrA	323774	.	C	T	176.546	.	DP=724	GT:PL:DP:AD	0/1:37,0,123:17:15,2	0/0:0,15,239:5:5,0	0/0:0,37,174:7:7,0	0/0:0,2,73:9:7,1	0/0:0,39,123:13:13,0	0/1:146,0,234:23:6,4	0/1:15,0,123:13:14,2	0/0:0,39,123:13:13,0	0/1:23,0,207:7:7,1	0/0:0,57,123:19:19,0
+chrA	522542	.	T	C	3.57232	.	DP=731	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,27,242:9:9,0	0/0:0,27,123:9:9,0	0/0:0,30,123:23:23,0	0/0:0,23,123:14:23,1	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/1:19,0,379:6:5,1	0/0:0,39,123:13:13,0
+chrA	522565	.	A	G	275.057	.	DP=750	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/0:0,33,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:0,47,123:16:16,0	0/0:0,17,192:6:6,0	0/0:0,27,123:9:9,0
+chrA	522632	.	G	C	20.0694	.	DP=629	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,24,236:7:7,0	0/0:0,27,123:9:9,0	0/1:62,0,123:23:7,3	0/0:0,45,123:15:15,0	0/0:0,47,123:16:16,0	0/0:0,6,123:17:17,1	0/0:0,51,123:17:17,0	0/0:0,37,375:7:7,0	0/0:0,36,123:12:12,0
+chrA	522667	.	G	A	224.975	.	DP=657	GT:PL:DP:AD	0/1:37,0,123:12:23,2	0/1:66,0,123:14:7,3	0/0:0,36,123:12:12,0	0/0:0,0,123:9:7,1	0/1:70,0,123:15:14,4	0/0:0,42,123:14:14,0	0/0:3,0,123:14:13,1	0/0:0,7,123:37:19,2	0/1:29,0,130:6:3,3	0/0:0,20,123:15:14,1
+chrA	522670	.	G	A	57.6329	.	DP=660	GT:PL:DP:AD	0/0:0,14,123:13:12,1	0/0:23,0,123:12:23,2	0/0:0,39,123:13:13,0	0/0:0,24,123:7:7,0	0/1:71,0,123:13:23,3	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/1:13,0,123:37:19,2	0/1:26,0,131:6:4,2	0/0:0,14,123:16:15,1
+chrA	522677	.	T	C	133.234	.	DP=660	GT:PL:DP:AD	0/0:0,2,123:13:12,1	0/1:23,0,123:12:23,2	0/0:0,39,123:13:13,0	0/0:3,0,123:7:7,1	0/1:71,0,123:13:23,3	0/0:0,42,123:14:14,0	0/0:6,0,123:13:12,1	0/0:0,4,123:20:17,2	0/1:26,0,131:6:4,2	0/1:70,0,123:16:13,3
+chrA	522700	.	A	C	497.779	.	DP=969	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,57,123:19:19,0	0/1:145,0,245:14:9,5	0/1:74,0,223:9:7,2	0/1:142,0,237:12:9,3	0/1:52,0,192:7:5,2	0/1:133,0,123:17:13,5
+chrA	522707	.	C	G	237.079	.	DP=931	GT:PL:DP:AD	0/0:4,0,123:14:23,1	0/1:71,0,123:12:7,4	0/0:0,23,123:14:23,1	0/0:0,30,123:23:23,0	0/1:30,0,123:19:17,2	0/0:0,39,123:13:13,0	0/0:0,30,123:23:23,0	0/1:20,0,245:14:9,2	0/1:22,0,157:5:4,1	0/0:7,0,123:17:15,2
+chrA	522714	.	G	C	275.077	.	DP=937	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0	0/0:0,57,123:19:19,0	0/1:147,0,123:13:7,5	0/1:74,0,235:9:7,2	0/1:61,0,123:14:12,2	0/1:45,0,159:5:4,1	0/0:9,0,123:17:16,1
+chrA	522723	.	T	C	779.971	.	DP=931	GT:PL:DP:AD	0/1:15,0,123:14:23,1	0/1:24,0,123:12:14,1	0/0:0,33,123:14:14,0	0/1:7,0,231:23:9,1	0/1:232,0,123:19:12,7	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/1:17,0,123:14:13,1	0/1:77,0,131:5:3,2	0/0:0,14,123:17:16,1
+chrA	522746	.	G	C	51.7515	.	DP=799	GT:PL:DP:AD	0/0:7,0,123:23:9,1	0/0:0,51,123:17:17,0	0/0:0,45,123:15:15,0	0/0:0,36,123:12:12,0	0/0:0,60,123:20:20,0	0/0:7,0,123:16:14,2	0/0:1,0,123:12:14,1	0/1:43,0,123:17:14,3	0/0:0,27,377:9:9,0	0/0:0,57,123:19:19,0
+chrA	522765	.	G	A	154.561	.	DP=949	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/1:22,0,123:15:13,2	0/0:0,33,123:15:14,1	0/0:0,36,123:12:12,0	0/1:42,0,123:16:14,2	0/0:0,45,123:15:15,0	0/0:0,36,123:12:12,0	0/1:46,0,123:20:17,3	0/1:74,0,179:23:7,3	0/0:0,17,123:19:17,1
+chrA	522769	.	T	G	231.671	.	DP=953	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/1:92,0,123:15:23,5	0/0:0,33,123:15:14,1	0/0:0,36,123:12:12,0	0/1:42,0,123:16:14,2	0/0:0,42,123:14:14,0	0/0:0,33,123:14:14,0	0/1:52,0,123:20:16,4	0/1:74,0,179:23:7,3	0/0:4,0,123:19:17,2
+chrA	537230	.	C	T	645.617	.	DP=755	GT:PL:DP:AD	0/1:24,0,123:12:14,1	0/0:7,0,203:23:9,1	0/0:0,27,123:9:9,0	0/1:137,0,245:23:7,3	0/0:0,36,123:12:12,0	0/1:146,0,123:12:9,3	0/1:99,0,123:13:9,4	0/0:1,0,123:12:14,1	0/1:42,0,205:6:5,1	0/1:30,0,123:13:14,2
+chrA	537402	.	G	A	696.719	.	DP=994	GT:PL:DP:AD	0/0:1,0,123:12:14,1	0/1:133,0,130:6:3,3	0/0:0,39,123:13:13,0	0/0:0,15,231:5:5,0	0/0:0,30,123:23:23,0	0/1:43,0,123:14:9,2	0/0:0,14,123:16:15,1	0/0:0,45,123:15:15,0	0/0:0,17,244:6:6,0	0/0:0,47,123:16:16,0
+chrA	537407	.	G	T	27.3755	.	DP=2314	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,17,123:6:6,0	0/0:0,39,123:13:13,0	0/0:0,15,231:5:5,0	0/0:0,30,123:23:23,0	0/0:0,36,123:12:12,0	0/0:0,14,123:16:15,1	0/0:0,47,123:16:16,0	0/0:0,15,224:5:5,0	0/0:0,47,123:16:16,0
+chrA	537423	.	C	T	54.0147	.	DP=2337	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/0:0,17,244:6:6,0	0/0:0,42,123:14:14,0	0/1:96,0,136:5:3,2	0/0:0,2,123:13:12,1	0/0:0,39,123:13:13,0	0/0:0,14,123:16:15,1	0/0:0,33,123:14:14,0	0/0:0,17,123:6:6,0	0/0:0,54,123:17:17,0
+chrA	537432	.	A	G	350.076	.	DP=2347	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:72,0,133:5:3,2	0/0:0,39,123:13:13,0	0/0:0,17,123:6:6,0	0/0:0,36,123:12:12,0	0/1:14,0,123:15:13,2	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,17,123:6:6,0	0/0:0,17,123:17:17,1
+chrA	537447	.	T	C	431.456	.	DP=2330	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,15,202:5:5,0	0/0:0,33,123:14:14,0	0/1:22,0,157:5:4,1	0/0:0,33,123:14:14,0	0/0:0,42,123:14:14,0	0/1:35,0,123:19:17,2	0/1:53,0,123:13:14,2	0/0:0,37,123:7:7,0	0/0:0,54,123:17:17,0
+chrA	537451	.	G	A	1635.62	.	DP=2327	GT:PL:DP:AD	0/1:36,0,245:7:7,1	0/1:53,0,133:5:3,2	0/0:0,30,123:23:23,0	0/1:22,0,157:5:4,1	0/0:0,33,123:14:14,0	0/0:0,20,123:14:13,1	0/1:97,0,123:17:15,3	0/1:53,0,123:13:14,2	0/0:0,37,123:7:7,0	0/1:75,0,123:17:15,3
+chrA	537454	.	C	T	431.496	.	DP=2332	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,15,193:5:5,0	0/0:0,33,123:14:14,0	0/1:22,0,157:5:4,1	0/0:0,33,123:14:14,0	0/0:0,39,123:13:13,0	0/1:35,0,123:19:17,2	0/1:53,0,123:13:14,2	0/0:0,37,123:7:7,0	0/0:0,57,123:19:19,0
+chrA	537456	.	A	G	437.729	.	DP=2336	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,15,202:5:5,0	0/0:0,33,123:14:14,0	0/1:22,0,157:5:4,1	0/0:0,33,123:14:14,0	0/0:0,39,123:13:13,0	0/1:35,0,123:19:17,2	0/1:53,0,123:13:14,2	0/0:0,37,123:7:7,0	0/0:0,57,123:19:19,0
+chrA	537479	.	A	T	357.313	.	DP=994	GT:PL:DP:AD	0/0:0,37,123:7:7,0	0/0:0,37,247:7:7,0	0/0:0,33,123:14:14,0	0/0:0,17,246:6:6,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,75,123:25:25,0	0/0:0,36,123:12:12,0	0/1:33,0,123:9:7,1	0/0:0,57,123:19:19,0
+chrB	1377601	.	A	G	717.794	.	DP=900	GT:PL:DP:AD	0/1:4,0,123:14:23,1	0/1:23,0,174:13:23,3	0/1:77,0,165:13:7,6	0/0:0,2,142:7:6,1	0/1:19,0,207:14:9,2	0/0:0,20,372:13:12,1	0/1:17,0,127:14:7,2	0/1:74,0,37:7:2,5	0/0:0,39,251:22:37,1	0/1:26,0,37:7:5,2
+chrB	1377606	.	T	C	300.531	.	DP=957	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,23,194:13:12,1	0/1:22,0,373:14:23,4	0/0:0,37,169:7:7,0	0/0:0,33,247:14:14,0	0/1:14,0,199:13:23,3	0/0:0,20,205:14:23,1	0/0:0,12,136:7:6,1	0/0:3,0,227:23:37,2	0/0:0,9,62:7:6,1
+chrB	1377617	.	T	C	752.207	.	DP=1434	GT:PL:DP:AD	0/0:0,2,123:13:12,1	0/1:13,0,204:16:13,3	0/0:0,14,233:17:16,1	0/0:0,24,201:7:7,0	0/0:0,12,123:15:14,1	0/0:0,5,123:37:19,2	0/1:14,0,167:12:14,1	0/1:39,0,235:23:7,2	0/0:0,9,123:25:37,4	0/0:0,27,145:9:9,0
+chrB	1377633	.	C	T	7.13971	.	DP=1296	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/0:0,32,123:19:17,1	0/0:0,27,231:17:16,1	0/0:0,33,242:14:14,0	0/1:25,0,123:17:15,2	0/0:0,60,123:20:20,0	0/0:0,42,123:14:14,0	0/1:36,0,142:14:9,2	0/0:0,47,123:27:27,1	0/0:0,27,149:9:9,0
+chrB	1377636	.	C	T	1361.67	.	DP=1346	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/1:33,0,236:19:15,4	0/0:0,29,237:17:16,1	0/0:0,33,242:14:14,0	0/1:70,0,123:17:13,4	0/1:137,0,244:20:13,7	0/1:51,0,179:14:12,2	0/0:0,33,157:14:14,0	0/1:20,0,123:27:25,3	0/0:0,27,149:9:9,0
+chrB	1377637	.	A	T	23.3957	.	DP=1374	GT:PL:DP:AD	0/0:0,37,123:16:15,1	0/0:0,54,123:19:17,0	0/0:0,51,252:17:17,0	0/0:0,33,242:14:14,0	0/0:0,51,123:17:17,0	0/0:0,60,123:20:20,0	0/0:0,42,123:14:14,0	0/0:0,33,204:14:14,0	0/0:0,37,123:27:26,2	0/0:0,27,149:9:9,0
+chrB	1377645	.	C	T	36.7502	.	DP=1456	GT:PL:DP:AD	0/0:0,51,123:17:17,0	0/0:0,54,123:17:17,0	0/0:0,51,123:17:17,0	0/0:0,33,242:14:14,0	0/0:6,0,123:17:17,1	0/0:0,15,123:22:37,1	0/0:0,45,123:15:15,0	0/0:0,33,204:14:14,0	0/1:76,0,123:29:25,4	0/0:23,0,120:14:23,1
+chrB	1377657	.	T	C	23.6917	.	DP=1591	GT:PL:DP:AD	0/0:0,51,123:17:17,0	0/0:0,57,123:19:19,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:6,0,123:17:17,1	0/0:0,37,123:24:23,1	0/0:0,51,123:17:17,0	0/0:0,33,223:14:14,0	0/1:37,0,123:27:23,5	0/0:0,33,203:14:14,0
+chrB	1377660	.	T	C	374.276	.	DP=1617	GT:PL:DP:AD	0/0:0,24,123:17:16,1	0/0:0,57,123:19:19,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,17,123:17:17,1	0/0:0,72,123:24:24,0	0/1:20,0,379:17:15,2	0/0:0,33,223:14:14,0	0/0:7,0,123:27:25,3	0/0:0,33,203:14:14,0
+chrB	1377672	.	A	G	125.522	.	DP=1626	GT:PL:DP:AD	0/1:40,0,123:17:15,2	0/0:0,26,123:22:37,1	0/0:0,30,231:17:17,1	0/1:17,0,123:15:13,2	0/1:59,0,123:17:15,3	0/0:0,71,123:27:27,0	0/0:0,51,123:17:17,0	0/0:0,36,227:12:12,0	0/0:0,75,123:25:25,0	0/1:25,0,174:13:14,2
+chrB	1377674	.	T	C	30.0734	.	DP=1677	GT:PL:DP:AD	0/0:0,54,123:17:17,0	0/0:0,32,123:19:17,1	0/0:0,54,123:17:17,0	0/0:0,17,123:14:13,1	0/0:0,54,123:17:17,0	0/0:0,75,123:25:25,0	0/0:0,51,123:17:17,0	0/0:9,0,173:12:14,1	0/0:0,17,123:27:25,2	0/0:0,36,225:12:12,0
+chrB	1377676	.	A	G	179.944	.	DP=1650	GT:PL:DP:AD	0/0:0,51,123:17:17,0	0/0:0,57,123:19:19,0	0/0:0,54,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/1:97,0,123:26:22,4	0/0:0,7,123:17:17,1	0/0:0,33,202:12:14,0	0/0:0,75,123:25:25,0	0/0:0,36,225:12:12,0
+chrB	1377693	.	A	G	40.9601	.	DP=1620	GT:PL:DP:AD	0/1:72,0,123:17:15,3	0/0:0,66,123:22:22,0	0/0:0,33,123:20:19,1	0/0:0,45,123:15:15,0	0/0:0,4,123:17:16,1	0/0:0,90,123:30:30,0	0/0:0,17,123:17:17,1	0/0:0,36,227:12:12,0	0/0:0,77,123:26:26,0	0/0:0,39,123:13:13,0
+chrB	1377724	.	A	G	220.167	.	DP=2326	GT:PL:DP:AD	0/0:0,63,123:37:37,0	0/0:0,69,123:23:23,0	0/0:0,17,376:17:15,2	0/0:0,47,123:16:16,0	0/0:0,14,123:16:15,1	0/0:0,75,123:25:25,0	0/1:20,0,123:17:16,2	0/0:0,30,191:23:23,0	0/0:0,12,254:20:17,2	0/0:0,33,123:14:14,0
+chrB	1377733	.	G	A	701.727	.	DP=997	GT:PL:DP:AD	0/0:0,4,123:17:16,1	0/1:7,0,123:37:19,2	0/0:0,47,235:16:16,0	0/0:0,45,123:15:15,0	0/1:27,0,123:16:14,2	0/1:64,0,123:23:17,5	0/1:27,0,123:17:15,3	0/0:0,3,161:23:9,1	0/1:77,0,230:19:13,6	0/0:0,23,123:14:23,1
+chrB	1377757	.	G	A	7.37174	.	DP=970	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,54,123:17:17,0	0/0:0,30,377:23:23,0	0/0:0,42,123:14:14,0	0/1:46,0,252:15:13,2	0/0:0,32,123:19:17,1	0/0:0,54,123:17:17,0	0/0:0,33,231:14:14,0	0/0:0,69,123:23:23,0	0/0:0,36,123:12:12,0
+chrB	1377770	.	C	T	3792.19	.	DP=747	GT:PL:DP:AD	0/1:149,0,209:13:7,6	0/1:206,0,167:17:7,23	0/1:51,0,146:7:4,4	0/1:30,0,123:12:7,4	0/1:159,0,146:12:5,7	0/0:0,6,123:14:14,3	0/1:149,0,239:17:23,7	0/1:161,0,72:13:4,9	0/1:236,0,169:17:7,14	0/1:152,0,222:14:5,6
+chrB	1377771	.	T	C	143.37	.	DP=755	GT:PL:DP:AD	0/1:74,0,231:12:23,2	0/0:0,54,123:17:17,0	0/0:0,24,192:7:7,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/1:16,0,373:14:13,1	0/0:0,47,123:16:16,0	0/0:0,39,234:13:13,0	0/0:0,54,123:17:17,0	0/0:0,33,123:14:14,0
+chrB	1377777	.	A	G	29.5237	.	DP=723	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,57,123:19:19,0	0/0:0,17,154:6:6,0	0/0:0,36,123:12:12,0	0/1:55,0,176:14:7,3	0/0:0,45,123:15:15,0	0/0:0,47,123:16:16,0	0/0:0,36,225:12:12,0	0/0:0,45,123:15:15,0	0/0:0,33,123:14:14,0
+chrB	1377793	.	A	G	2763.65	.	DP=719	GT:PL:DP:AD	0/1:66,0,123:14:9,2	0/0:0,54,123:17:17,0	0/1:32,0,76:5:4,1	0/1:142,0,224:13:9,4	0/1:147,0,166:12:7,5	0/1:235,0,206:15:9,6	0/1:232,0,123:16:12,4	0/1:50,0,151:14:7,3	0/1:42,0,123:15:12,3	0/1:171,0,197:14:7,4
+chrB	1377923	.	C	T	13.3349	.	DP=727	GT:PL:DP:AD	0/0:0,30,237:23:23,0	0/0:0,17,374:6:6,0	0/1:19,0,99:6:5,1	0/0:0,27,237:9:9,0	0/0:0,17,200:6:6,0	0/0:0,17,131:6:6,0	0/1:49,0,202:13:14,2	0/0:0,33,376:14:14,0	0/0:0,30,171:23:23,0	0/0:0,27,243:9:9,0
+chrB	1775764	.	G	A	75.5256	.	DP=563	GT:PL:DP:AD	0/0:0,30,247:23:23,0	0/0:0,15,145:5:5,0	0/0:0,36,123:12:12,0	0/1:19,0,176:6:5,1	0/0:0,30,175:23:23,0	0/1:52,0,91:7:5,2	0/0:0,15,142:5:5,0	0/0:0,17,200:6:6,0	0/0:0,15,127:5:5,0	0/0:0,17,131:6:6,0
+chrB	1775770	.	C	T	230.494	.	DP=552	GT:PL:DP:AD	0/1:72,0,175:14:7,3	0/0:0,15,145:5:5,0	0/0:0,36,123:12:12,0	0/0:0,17,373:6:6,0	0/0:0,27,155:9:9,0	0/0:0,17,136:6:6,0	0/0:0,15,142:5:5,0	0/0:0,17,200:6:6,0	0/0:0,17,142:6:6,0	0/0:0,17,137:6:6,0
+chrB	23444702	.	A	C	746.051	.	DP=314	GT:PL:DP:AD	0/1:55,0,171:7:5,2	0/0:0,24,379:7:7,0	0/0:0,1,31:5:3,2	0/0:0,3,234:23:9,1	0/0:0,47,123:16:16,0	0/1:13,0,209:9:7,1	0/1:32,0,237:5:4,1	0/1:30,0,74:5:4,1	0/1:73,0,154:13:7,5	0/0:0,30,234:23:23,0
+chrB	23444707	.	A	G	491.951	.	DP=437	GT:PL:DP:AD	0/0:0,37,227:7:7,0	0/0:0,24,244:7:7,0	0/1:27,0,37:6:5,1	0/1:27,0,235:23:9,1	0/1:6,0,123:16:14,2	0/0:0,27,123:9:9,0	0/1:54,0,79:5:3,2	0/0:0,15,127:5:5,0	0/1:37,0,162:13:14,2	0/1:27,0,145:7:6,2
+chrB	23444714	.	C	T	27.5973	.	DP=451	GT:PL:DP:AD	0/0:0,37,231:7:7,0	0/0:0,24,244:7:7,0	0/0:0,17,90:6:6,0	0/0:0,33,123:14:14,0	0/0:0,47,123:16:16,0	0/1:36,0,167:7:7,1	0/0:0,15,157:5:5,0	0/0:0,15,127:5:5,0	0/0:0,42,200:14:14,0	0/1:36,0,160:7:7,1
+chrB	23444722	.	A	G	51.7149	.	DP=503	GT:PL:DP:AD	0/0:0,24,247:7:7,0	0/0:0,37,237:7:7,0	0/0:0,17,90:6:6,0	0/0:0,42,123:14:14,0	0/0:0,51,123:17:17,0	0/0:0,27,123:9:9,0	0/0:0,15,150:5:5,0	0/0:0,17,145:6:6,0	0/0:4,0,179:17:16,1	0/0:0,27,233:9:9,0
+chrB	23444723	.	T	C	45.9337	.	DP=431	GT:PL:DP:AD	0/0:0,37,231:7:7,0	0/0:0,24,244:7:7,0	0/0:0,17,90:6:6,0	0/1:13,0,249:14:23,1	0/0:0,47,123:16:16,0	0/0:0,24,235:7:7,0	0/0:0,15,157:5:5,0	0/0:23,22,142:5:4,0	0/0:0,42,201:14:14,0	0/0:0,37,376:7:7,0
+chrB	23444734	.	C	T	273.579	.	DP=571	GT:PL:DP:AD	0/0:0,17,222:6:6,0	0/0:0,37,123:7:7,0	0/1:13,0,125:7:7,1	0/0:0,45,123:16:15,0	0/1:55,0,123:19:15,3	0/0:0,27,240:9:9,0	0/0:0,17,166:6:6,0	0/0:0,15,137:7:7,1	0/0:0,51,123:17:17,0	0/1:32,0,167:23:6,4
+chrB	23444737	.	G	A	352.977	.	DP=499	GT:PL:DP:AD	0/0:0,24,247:7:7,0	0/0:0,37,247:7:7,0	0/0:0,17,90:6:6,0	0/0:0,42,123:14:14,0	0/1:52,0,123:17:14,3	0/0:0,27,123:9:9,0	0/0:0,15,150:5:5,0	0/1:12,0,239:6:4,2	0/1:125,0,167:17:14,6	0/0:3,0,200:9:6,3
+chrB	23444747	.	C	T	79.4322	.	DP=637	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,17,123:9:7,1	0/0:0,30,375:23:23,0	0/0:0,2,123:16:15,1	0/0:0,66,123:22:22,0	0/0:0,5,227:14:13,1	0/1:19,0,137:6:5,1	0/0:0,33,206:14:14,0	0/0:0,16,123:37:19,1	0/0:1,0,373:12:14,1
+chrB	23444764	.	G	A	167.703	.	DP=696	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,39,123:13:13,0	0/1:17,0,199:9:7,1	0/0:0,47,123:16:16,0	0/0:0,17,123:37:20,1	0/0:6,0,222:16:14,2	0/0:6,0,137:6:5,1	0/0:0,23,197:14:12,2	0/0:0,26,123:22:37,1	0/0:0,42,123:14:14,0
+chrB	23444771	.	G	A	2317.07	.	DP=700	GT:PL:DP:AD	0/1:36,0,123:12:23,2	0/0:0,39,123:13:13,0	0/0:0,5,374:23:9,1	0/1:6,0,123:17:14,3	0/0:0,60,123:20:20,0	0/1:34,0,203:16:13,3	0/1:23,0,143:7:7,1	0/1:7,0,155:15:13,2	0/1:77,0,123:23:17,5	0/0:0,0,242:15:13,2
+chrB	23444773	.	T	A	27.3017	.	DP=730	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,39,123:13:13,0	0/0:0,27,223:9:9,0	0/0:0,42,123:14:14,0	0/1:47,0,123:20:17,3	0/0:0,47,123:16:16,0	0/0:0,24,207:7:7,0	0/0:0,47,225:16:16,0	0/0:0,45,123:25:24,1	0/1:37,0,222:17:14,3
+chrB	23444774	.	C	T	77.4935	.	DP=733	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:42,0,245:13:14,2	0/0:0,27,223:9:9,0	0/0:0,42,123:14:14,0	0/0:0,13,123:20:17,2	0/0:0,15,247:16:14,2	0/1:45,0,167:9:6,3	0/0:0,23,194:16:15,1	0/1:17,0,123:25:23,2	0/0:0,39,123:17:16,1
+chrB	23444775	.	G	A	42.0723	.	DP=734	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,2,123:13:12,1	0/0:0,27,223:9:9,0	0/0:0,42,123:14:14,0	0/0:0,60,123:20:20,0	0/0:0,36,123:16:15,1	0/0:0,27,226:9:9,0	0/0:0,51,223:17:17,0	0/0:0,75,123:25:25,0	0/0:0,51,123:17:17,0
+chrB	23444777	.	A	C	24.6593	.	DP=727	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:17,0,254:13:12,1	0/1:27,0,156:23:9,1	0/0:0,47,123:16:16,0	0/0:4,0,123:20:17,2	0/0:0,47,123:16:16,0	0/0:0,24,207:7:7,0	0/0:0,47,373:16:16,0	0/0:0,75,123:25:25,0	0/0:0,51,123:17:17,0
+chrB	23444779	.	C	T	27.7264	.	DP=727	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:17,0,254:13:12,1	0/1:31,0,160:9:7,1	0/0:0,47,123:16:16,0	0/0:4,0,123:20:17,2	0/0:0,47,123:16:16,0	0/0:0,24,207:7:7,0	0/0:0,47,220:16:16,0	0/0:0,75,123:25:25,0	0/0:0,51,123:17:17,0
+chrB	23444793	.	T	A	277.31	.	DP=730	GT:PL:DP:AD	0/1:24,0,233:12:14,1	0/0:0,42,123:14:14,0	0/0:0,17,242:9:7,1	0/1:97,0,375:14:14,3	0/0:0,12,123:19:17,1	0/0:0,47,123:16:16,0	0/0:0,6,171:23:9,1	0/0:0,51,223:17:17,0	0/1:37,0,123:26:23,3	0/0:0,45,239:15:15,0
+chrB	23444799	.	C	T	231.765	.	DP=747	GT:PL:DP:AD	0/1:22,0,123:14:12,2	0/0:0,39,123:13:13,0	0/1:31,0,179:9:7,2	0/0:0,42,123:14:14,0	0/0:0,29,123:16:15,1	0/0:0,51,123:17:17,0	0/0:0,36,205:12:12,0	0/0:0,54,242:17:17,0	0/0:0,39,123:27:27,1	0/0:0,36,123:16:15,1
+chrB	23444909	.	T	C	50.0555	.	DP=765	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:15,0,231:14:13,1	0/1:31,0,175:9:7,1	0/0:0,42,123:14:14,0	0/1:25,0,123:15:13,2	0/0:0,51,123:17:17,0	0/0:0,36,237:12:12,0	0/0:0,57,123:19:19,0	0/0:0,74,123:27:27,0	0/0:0,47,123:16:16,0
+chrB	23444920	.	A	G	34.7771	.	DP=759	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:12,0,232:15:14,1	0/1:27,0,197:23:9,1	0/0:0,33,253:14:14,0	0/1:19,0,123:17:15,2	0/0:0,45,123:15:15,0	0/0:0,39,235:13:13,0	0/0:0,66,123:23:22,0	0/0:0,71,123:27:27,0	0/0:1,43,247:16:14,0
+chrB	23444932	.	T	G	37.2017	.	DP=733	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:6,0,123:17:16,1	0/1:27,0,197:23:9,1	0/0:0,39,123:13:13,0	0/0:4,0,123:19:17,2	0/0:0,51,123:17:17,0	0/0:0,47,123:16:16,0	0/0:0,69,123:23:23,0	0/0:0,74,123:27:27,0	0/0:0,45,123:15:15,0
+chrB	23725070	.	A	T	73.4401	.	DP=977	GT:PL:DP:AD	0/1:30,0,252:23:9,1	0/0:0,15,177:5:5,0	0/0:0,47,123:16:16,0	0/0:0,33,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,54,123:17:17,0	0/0:7,53,123:16:15,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,33,123:14:14,0
+chrB	23725071	.	G	A	27.2374	.	DP=997	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,15,194:5:5,0	0/1:69,0,123:17:15,2	0/0:0,33,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,54,123:17:17,0	0/0:0,47,123:16:16,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,33,123:14:14,0
+chrB	23725099	.	C	T	323.473	.	DP=2340	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,17,200:6:6,0	0/0:0,37,123:20:19,1	0/1:23,0,123:12:14,1	0/1:14,0,123:14:12,2	0/0:0,63,123:37:37,0	0/1:27,0,123:17:15,2	0/0:0,0,123:16:15,1	0/0:0,47,123:16:16,0	0/1:57,0,123:13:14,2
+chrB	23725129	.	A	G	239.436	.	DP=2307	GT:PL:DP:AD	0/1:15,0,123:15:14,1	0/1:13,0,171:7:7,1	0/1:15,0,123:17:16,2	0/0:0,45,123:15:15,0	0/0:0,39,123:13:13,0	0/0:0,57,123:19:19,0	0/0:0,36,123:12:12,0	0/0:0,51,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0
+chrB	23725137	.	G	T	4.24291	.	DP=2307	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,37,223:7:7,0	0/0:0,47,123:17:16,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,20,123:19:17,1	0/0:0,39,123:13:13,0	0/0:0,51,123:17:17,0	0/0:0,2,123:12:14,1	0/0:0,30,123:23:23,0
+chrB	23725140	.	G	A	176.335	.	DP=979	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/0:0,24,242:7:7,0	0/0:0,17,123:17:17,1	0/1:17,0,123:14:13,1	0/1:51,0,123:12:23,2	0/0:0,45,123:15:15,0	0/0:0,15,123:13:12,1	0/0:0,6,123:17:16,1	0/0:0,30,123:23:23,0	0/0:0,42,123:14:14,0
+chrB	23725143	.	T	C	4.75433	.	DP=2336	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,37,229:7:7,0	0/0:0,57,123:19:19,0	0/0:23,0,123:12:14,1	0/0:0,37,123:15:14,1	0/0:0,60,123:20:20,0	0/1:37,0,123:14:12,2	0/0:0,3,123:17:16,1	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0
+chrB	23725146	.	C	T	3.15237	.	DP=2315	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,37,229:7:7,0	0/0:3,0,123:19:17,1	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,57,123:19:19,0	0/0:0,42,123:14:14,0	0/0:0,3,123:17:16,1	0/0:0,14,123:13:12,1	0/0:0,30,123:23:23,0
+chrB	23725147	.	C	A	6.4927	.	DP=969	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/1:20,0,179:7:7,1	0/0:0,51,123:17:17,0	0/0:0,39,123:13:13,0	0/0:0,27,123:13:12,1	0/0:0,47,123:16:16,0	0/0:0,45,123:15:15,0	0/0:0,54,123:17:17,0	0/0:7,0,123:9:7,1	0/0:0,42,123:14:14,0
+chrB	23725154	.	C	T	229.326	.	DP=960	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,24,226:7:7,0	0/0:0,37,123:20:17,2	0/1:52,0,123:13:23,3	0/0:0,4,123:13:12,1	0/0:0,45,123:15:15,0	0/1:34,0,123:15:13,2	0/0:0,6,123:17:17,1	0/0:0,27,123:9:9,0	0/0:0,45,123:15:15,0
+chrB	23725174	.	G	A	165.625	.	DP=900	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:0,51,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0
+chrB	23725179	.	G	A	173.137	.	DP=944	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/1:17,0,227:23:9,1	0/0:0,35,123:19:17,1	0/0:0,42,123:14:14,0	0/1:17,0,123:14:13,1	0/0:0,45,123:15:15,0	0/0:0,45,123:15:15,0	0/0:0,17,123:17:17,1	0/0:0,33,123:14:14,0	0/1:69,0,123:15:12,3
+chrB	23725192	.	G	A	23.0477	.	DP=771	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:2,0,249:17:15,2	0/0:0,42,123:14:14,0	0/1:17,0,123:14:13,1	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/0:1,0,254:12:14,1	0/0:0,39,123:13:13,0
+chrB	23725193	.	T	C	147.697	.	DP=765	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,30,123:23:23,0	0/0:0,51,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,39,123:13:13,0
+chrB	23725203	.	G	A	274.023	.	DP=701	GT:PL:DP:AD	0/0:1,0,123:13:12,1	0/0:0,30,123:23:23,0	0/0:0,33,123:15:14,1	0/0:0,36,123:12:12,0	0/1:231,0,232:14:14,3	0/1:24,0,123:12:14,1	0/0:0,42,123:14:14,0	0/0:0,9,123:17:17,1	0/0:0,25,123:12:14,1	0/0:0,36,123:12:12,0
+chrB	23725204	.	C	T	179.713	.	DP=796	GT:PL:DP:AD	0/1:72,0,247:13:14,2	0/1:30,0,171:23:9,1	0/0:0,45,123:15:15,0	0/0:0,33,123:12:14,0	0/0:0,42,123:14:14,0	0/1:61,0,123:12:23,2	0/0:0,42,123:14:14,0	0/0:0,54,123:17:17,0	0/0:0,36,123:12:12,0	0/1:46,0,376:12:9,3
+chrB	23725207	.	G	A	174.601	.	DP=773	GT:PL:DP:AD	0/0:0,2,123:14:13,1	0/0:0,30,123:23:23,0	0/0:0,33,123:15:14,1	0/0:0,39,123:13:13,0	0/1:97,0,199:15:12,3	0/1:24,0,123:12:14,1	0/0:0,42,123:14:14,0	0/0:0,6,123:17:16,1	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0
+chrB	23725379	.	C	T	264.645	.	DP=736	GT:PL:DP:AD	0/0:0,42,123:14:14,0	0/1:14,0,204:23:7,2	0/0:0,42,123:14:14,0	0/1:12,0,197:23:9,1	0/0:0,27,123:13:12,1	0/0:0,30,123:23:23,0	0/0:0,30,171:23:23,0	0/1:37,0,123:16:14,2	0/1:12,0,204:14:23,1	0/1:23,0,372:12:14,1
+chrB	23726027	.	C	T	37.9377	.	DP=561	GT:PL:DP:AD	0/1:59,0,131:7:5,2	0/0:0,15,165:5:5,0	0/0:0,24,239:7:7,0	0/0:0,27,225:9:9,0	0/1:24,0,179:12:14,1	0/0:0,37,161:7:7,0	0/0:0,27,232:9:9,0	0/0:0,30,237:23:23,0	0/0:7,0,132:5:4,1	0/0:0,37,142:7:7,0
+chrB	23726037	.	C	T	31.576	.	DP=533	GT:PL:DP:AD	0/0:0,24,251:7:7,0	0/1:30,0,144:5:4,1	0/0:0,37,225:7:7,0	0/1:16,0,174:9:7,1	0/0:0,4,179:9:7,1	0/0:0,17,157:6:6,0	0/0:0,27,232:9:9,0	0/0:0,30,190:23:23,0	0/0:0,15,161:5:5,0	0/0:0,15,139:5:5,0
+chrB	23726145	.	C	T	207.667	.	DP=700	GT:PL:DP:AD	0/1:71,0,373:9:7,2	0/0:0,15,139:5:5,0	0/0:0,0,176:7:6,1	0/0:0,25,123:12:14,1	0/0:0,42,123:14:14,0	0/0:0,33,372:14:14,0	0/0:0,27,236:9:9,0	0/1:37,0,123:7:7,1	0/0:4,0,374:14:23,1	0/0:0,17,160:6:6,0
+chrB	23726236	.	A	T	137.015	.	DP=729	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/1:22,0,97:5:4,1	0/0:0,37,375:7:7,0	0/1:17,0,123:14:23,1	0/0:0,5,123:17:16,1	0/0:0,33,379:14:14,0	0/0:0,30,123:23:23,0	0/0:0,14,172:9:7,2	0/0:0,30,123:23:23,0	0/0:0,17,160:6:6,0
+chrB	23727144	.	C	A	124.652	.	DP=972	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:5,0,123:13:12,1	0/0:0,39,123:13:13,0	0/0:0,7,123:17:16,1	0/0:0,0,123:20:19,1	0/0:0,42,123:14:14,0	0/0:0,25,123:15:13,2	0/0:0,17,123:6:6,0	0/0:5,0,123:26:24,2	0/0:0,39,123:13:13,0
+chrB	23727727	.	G	A	63.7661	.	DP=637	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,30,123:23:23,0	0/0:0,39,123:13:13,0	0/1:32,0,177:9:7,1	0/0:0,45,123:15:15,0	0/0:0,27,123:9:9,0	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,37,167:7:7,0	0/0:0,45,123:15:15,0
+chrB	23727765	.	G	C	37.0202	.	DP=756	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,33,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,51,123:17:17,0	0/0:0,30,240:23:23,0	0/0:0,47,123:16:16,0
+chrB	23727767	.	C	T	30.1795	.	DP=762	GT:PL:DP:AD	0/1:16,0,194:7:6,1	0/1:27,0,242:14:23,1	0/1:15,0,123:15:14,1	0/0:0,2,123:13:12,1	0/0:0,42,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,27,252:9:9,0	0/0:0,47,123:16:16,0
+chrB	23727775	.	C	T	207.009	.	DP=771	GT:PL:DP:AD	0/0:0,37,240:7:7,0	0/0:0,30,123:23:23,0	0/0:0,45,123:15:15,0	0/0:0,39,123:13:13,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:0,47,123:16:16,0	0/0:0,7,170:7:7,1	0/0:0,47,123:16:16,0
+chrB	23727953	.	T	C	460.004	.	DP=767	GT:PL:DP:AD	0/1:33,0,123:9:7,1	0/0:0,24,233:7:7,0	0/1:24,0,123:12:14,1	0/0:0,31,123:26:25,1	0/0:0,42,123:14:14,0	0/1:57,0,247:16:13,3	0/1:33,0,250:9:7,1	0/0:0,17,123:17:16,1	0/1:37,0,203:13:12,1	0/1:62,0,123:19:17,2
+chrB	23727957	.	C	T	23.9547	.	DP=767	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,24,233:7:7,0	0/0:0,36,123:12:12,0	0/0:0,67,123:27:26,1	0/0:0,42,123:14:14,0	0/0:0,47,123:16:16,0	0/0:0,37,249:7:7,0	0/0:0,51,123:17:17,0	0/0:0,39,123:13:13,0	0/0:0,54,123:17:17,0
+chrB	23727964	.	G	A	715.335	.	DP=740	GT:PL:DP:AD	0/1:23,0,123:9:7,1	0/0:0,37,203:7:7,0	0/1:7,0,253:14:23,1	0/1:59,0,123:26:22,4	0/1:17,0,123:14:13,1	0/1:147,0,244:16:12,4	0/1:36,0,223:7:7,1	0/1:77,0,123:17:15,3	0/1:14,0,225:12:9,3	0/0:0,20,123:17:16,1
+chrB	2565156	.	C	T	397.267	.	DP=761	GT:PL:DP:AD	0/0:0,15,161:5:5,0	0/0:0,27,249:9:9,0	0/1:127,0,123:19:14,5	0/0:0,37,237:7:7,0	0/0:0,42,123:17:17,1	0/1:20,0,123:23:9,1	0/1:24,0,177:9:7,1	0/0:0,17,205:6:6,0	0/1:19,0,196:23:9,1	0/1:14,0,220:14:9,2
+chrB	2565179	.	C	T	201.271	.	DP=677	GT:PL:DP:AD	0/1:29,0,142:7:6,1	0/1:16,0,151:7:6,1	0/0:0,57,123:19:19,0	0/0:0,24,123:7:7,0	0/0:0,51,123:17:17,0	0/1:74,0,372:14:9,2	0/1:22,0,222:23:9,1	0/0:0,15,153:5:5,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0
+chrB	2597157	.	G	A	254.316	.	DP=753	GT:PL:DP:AD	0/0:0,16,123:15:14,1	0/0:0,36,123:12:12,0	0/1:63,0,251:37:17,4	0/1:9,0,123:15:13,2	0/0:0,17,123:17:17,1	0/0:0,47,123:16:16,0	0/1:234,0,123:37:17,4	0/0:0,45,123:15:15,0	0/1:14,0,123:12:23,2	0/0:0,27,123:9:9,0
+chrB	4063731	.	T	G	17.367	.	DP=715	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,192:5:5,0	0/0:0,39,123:13:13,0	0/1:22,0,151:7:7,1	0/0:0,30,179:23:23,0	0/0:0,24,229:7:7,0	0/0:0,42,123:14:14,0	0/0:0,24,123:7:7,0	0/0:0,27,252:9:9,0	0/0:0,37,175:7:7,0
+chrB	4063761	.	A	G	467.626	.	DP=701	GT:PL:DP:AD	0/1:37,0,225:7:6,2	0/0:0,17,202:6:6,0	0/1:25,0,123:12:23,2	0/0:0,17,374:6:6,0	0/1:26,0,123:9:7,2	0/0:0,0,123:9:7,1	0/1:25,0,123:14:12,2	0/0:0,24,123:7:7,0	0/0:0,20,123:23:9,1	0/0:0,6,146:7:6,1
+chrB	4063777	.	C	T	15.7177	.	DP=704	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,17,377:6:6,0	0/0:0,36,123:12:12,0	0/0:0,17,123:6:6,0	0/0:0,37,177:7:7,0	0/0:0,24,123:7:7,0	0/0:0,42,123:14:14,0	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,37,204:7:7,0
+chrB	6442376	.	C	T	155.206	.	DP=561	GT:PL:DP:AD	0/1:57,0,77:7:6,2	0/1:42,0,164:6:5,1	0/1:22,0,163:6:5,1	0/0:0,15,146:5:5,0	0/0:0,24,231:7:7,0	0/0:0,24,174:7:7,0	0/0:0,24,123:7:7,0	0/0:0,37,123:7:7,0	0/0:0,17,163:6:6,0	0/0:0,37,227:7:7,0
+chrB	6442396	.	G	T	17.9444	.	DP=579	GT:PL:DP:AD	0/0:0,17,172:6:6,0	0/0:0,15,372:5:5,0	0/0:0,17,377:6:6,0	0/0:0,37,171:7:7,0	0/1:33,0,207:9:7,1	0/0:0,37,377:7:7,0	0/0:0,24,123:7:7,0	0/0:0,37,123:7:7,0	0/0:0,17,172:6:6,0	0/1:16,0,207:7:6,1
+chrB	6442422	.	C	T	223.157	.	DP=673	GT:PL:DP:AD	0/0:0,37,193:7:7,0	0/0:0,15,372:5:5,0	0/1:40,0,160:5:4,1	0/1:61,0,160:7:5,2	0/0:0,24,245:7:7,0	0/0:0,27,252:9:9,0	0/1:36,0,190:7:7,1	0/0:0,17,254:6:6,0	0/1:55,0,123:23:7,2	0/0:0,24,123:7:7,0
+chrB	6442427	.	G	A	375.973	.	DP=713	GT:PL:DP:AD	0/1:25,0,144:7:6,1	0/0:0,17,249:6:6,0	0/0:0,15,207:5:5,0	0/1:16,0,196:7:6,1	0/0:0,24,245:7:7,0	0/1:27,0,375:9:7,1	0/1:40,0,179:7:6,2	0/0:0,17,254:6:6,0	0/0:0,30,123:23:23,0	0/1:31,0,205:7:7,1
+chrB	6442433	.	G	A	317.99	.	DP=731	GT:PL:DP:AD	0/1:61,0,97:7:5,2	0/1:42,0,177:6:5,1	0/1:33,0,153:6:4,2	0/0:0,37,240:7:7,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/0:0,24,243:7:7,0	0/0:0,17,254:6:6,0	0/0:0,30,123:23:23,0	0/0:0,24,123:7:7,0
+chrB	6442472	.	G	A	222.967	.	DP=773	GT:PL:DP:AD	0/0:7,0,222:23:9,1	0/0:0,17,233:6:6,0	0/0:0,24,376:7:7,0	0/0:14,0,247:14:23,1	0/0:0,27,123:9:9,0	0/0:0,30,123:23:23,0	0/0:1,0,227:7:7,1	0/0:0,17,197:6:6,0	0/0:0,39,123:13:13,0	0/0:0,24,123:7:7,0
+chrB	6473463	.	C	T	77.544	.	DP=709	GT:PL:DP:AD	0/0:1,0,375:12:14,1	0/0:0,2,46:5:4,1	0/1:13,0,239:23:9,1	0/1:19,0,157:6:5,1	0/1:55,0,146:14:9,2	0/0:0,27,251:9:9,0	0/0:0,33,374:14:14,0	0/1:14,0,162:23:9,1	0/0:0,39,123:13:13,0	0/1:47,0,127:9:7,2
+chrB	6473533	.	C	T	131.361	.	DP=737	GT:PL:DP:AD	0/0:0,17,123:13:12,1	0/0:0,15,72:5:5,0	0/0:0,30,229:23:23,0	0/0:0,17,196:6:6,0	0/0:0,37,170:7:7,0	0/0:0,30,123:23:23,0	0/0:0,17,123:14:13,1	0/0:0,24,170:7:7,0	0/0:0,47,123:16:16,0	0/0:0,30,177:23:23,0
+chrB	7722505	.	G	A	37.1513	.	DP=947	GT:PL:DP:AD	0/1:61,0,131:7:5,2	0/0:0,24,225:7:7,0	0/0:0,47,123:16:16,0	0/1:19,0,123:9:7,1	0/0:0,36,123:12:12,0	0/0:0,17,123:14:13,1	0/0:0,45,123:15:15,0	0/0:0,15,200:5:5,0	0/0:0,57,123:19:19,0	0/0:0,3,123:12:14,1
+chrB	7722512	.	A	G	170.726	.	DP=997	GT:PL:DP:AD	0/0:0,37,374:7:7,0	0/0:0,24,225:7:7,0	0/0:0,37,123:16:15,1	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,45,123:15:15,0	0/0:0,45,123:15:15,0	0/0:0,17,226:6:6,0	0/0:0,57,123:19:19,0	0/0:0,2,123:13:12,1
+chrB	7722527	.	A	T	4.19177	.	DP=2359	GT:PL:DP:AD	0/1:42,0,146:6:5,1	0/0:0,24,225:7:7,0	0/0:12,0,123:16:15,1	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/0:0,17,224:6:6,0	0/0:0,57,123:19:19,0	0/0:0,45,123:15:15,0
+chrB	7722529	.	G	A	2676.93	.	DP=2359	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,24,226:7:7,0	0/1:97,0,222:16:13,3	0/1:79,0,230:9:6,3	0/1:146,0,123:12:9,3	0/1:236,0,123:14:14,3	0/1:37,0,123:14:12,2	0/1:42,0,169:6:5,1	0/1:79,0,123:19:16,3	0/0:0,7,123:15:14,1
+chrB	7722530	.	C	T	197.193	.	DP=2359	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,24,226:7:7,0	0/0:0,37,123:16:15,1	0/1:39,0,123:9:7,2	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,6,123:13:12,1	0/0:0,17,226:6:6,0	0/0:0,57,123:19:19,0	0/0:0,45,123:15:15,0
+chrB	7722533	.	G	A	75.2397	.	DP=2366	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,24,226:7:7,0	0/0:0,47,123:16:16,0	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:7,0,123:13:12,1	0/0:0,17,226:6:6,0	0/0:0,60,123:20:20,0	0/0:0,45,123:15:15,0
+chrB	7722537	.	G	T	14.5402	.	DP=2362	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,24,226:7:7,0	0/0:0,45,123:15:15,0	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,39,123:13:13,0	0/0:0,17,226:6:6,0	0/0:0,60,123:20:20,0	0/0:0,33,123:15:14,1
+chrB	7722560	.	G	A	230.979	.	DP=957	GT:PL:DP:AD	0/0:0,15,223:5:5,0	0/0:0,17,147:6:6,0	0/0:0,33,123:14:14,0	0/0:0,37,231:7:7,0	0/0:0,27,123:9:9,0	0/0:0,42,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,15,147:5:5,0	0/0:0,5,123:17:16,1	0/0:0,33,123:15:14,1
+chrB	7722565	.	G	A	991.067	.	DP=927	GT:PL:DP:AD	0/1:137,0,70:5:2,3	0/0:0,3,127:6:4,2	0/1:95,0,379:14:7,4	0/1:16,0,205:7:6,1	0/0:0,24,123:7:7,0	0/1:14,0,123:14:12,2	0/1:56,0,123:14:7,3	0/0:0,15,147:5:5,0	0/0:0,20,123:16:13,3	0/1:135,0,372:15:23,5
+chrB	7722576	.	T	C	56.6724	.	DP=726	GT:PL:DP:AD	0/0:0,15,177:5:5,0	0/0:0,17,144:6:6,0	0/0:0,30,123:23:23,0	0/0:0,15,140:5:5,0	0/0:0,24,123:7:7,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,15,147:5:5,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0
+chrB	7737230	.	G	A	51.7777	.	DP=2326	GT:PL:DP:AD	0/1:42,0,146:6:5,1	0/1:39,0,125:7:6,1	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/0:0,33,123:14:14,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0	0/0:0,15,167:5:5,0	0/0:0,60,123:20:20,0	0/0:0,45,123:15:15,0
+chrX	1447493	.	C	T	232.379	.	DP=602	GT:PL:DP:AD	0/1:63,0,19:5:3,2	0/1:33,0,161:9:7,2	0/0:0,33,127:14:14,0	0/0:0,9,145:7:6,2	0/1:50,0,60:9:5,4	0/1:27,0,162:7:6,2	0/1:12,0,201:15:12,3	0/1:16,0,147:7:6,1	0/1:47,0,95:9:5,4	0/0:0,14,229:16:14,2
+chrX	1447496	.	T	C	272.263	.	DP=615	GT:PL:DP:AD	0/1:63,0,19:5:3,2	0/1:54,0,145:9:6,3	0/0:0,23,130:14:23,1	0/0:0,9,145:7:6,2	0/1:49,0,63:7:5,3	0/1:27,0,162:7:6,2	0/1:12,0,201:15:12,3	0/1:16,0,147:7:6,1	0/1:47,0,95:9:5,4	0/0:0,14,229:16:14,2
+chrX	1447499	.	C	T	19.1714	.	DP=639	GT:PL:DP:AD	0/1:26,0,59:5:4,1	0/1:33,0,177:9:7,2	0/0:0,36,162:12:12,0	0/0:0,30,157:23:23,0	0/0:1,0,230:7:7,1	0/0:0,24,372:7:7,0	0/0:0,33,123:15:14,1	0/0:0,24,164:7:7,0	0/1:25,0,129:23:7,3	0/0:0,47,253:16:16,0
+chrX	1447501	.	C	T	2374.19	.	DP=647	GT:PL:DP:AD	0/0:0,15,237:5:5,0	0/1:22,0,177:9:7,2	0/0:0,36,161:12:12,0	0/0:0,5,129:23:9,1	0/0:0,24,131:7:7,0	0/0:0,24,372:7:7,0	0/0:2,0,203:16:14,2	0/1:64,0,144:9:6,3	0/1:23,0,132:23:7,2	0/1:72,0,167:16:13,3
+chrX	1447577	.	T	A	96.6122	.	DP=677	GT:PL:DP:AD	0/1:19,0,59:6:5,1	0/1:37,0,176:9:7,2	0/0:0,30,203:23:23,0	0/0:0,27,237:9:9,0	0/0:0,37,171:7:7,0	0/0:0,24,157:7:7,0	0/0:0,23,123:16:15,1	0/1:32,0,167:14:9,2	0/1:70,0,173:23:7,3	0/0:0,30,231:23:23,0
+chrX	1447614	.	T	C	269.427	.	DP=551	GT:PL:DP:AD	0/1:22,0,37:5:4,1	0/0:0,17,167:6:6,0	0/0:0,33,177:14:14,0	0/1:12,0,169:14:23,1	0/1:31,0,72:7:5,2	0/1:24,0,56:6:4,2	0/0:0,25,161:12:14,1	0/1:35,0,140:14:9,2	0/1:72,0,73:7:4,3	0/0:0,24,169:7:7,0
+chrX	1447616	.	A	G	235.61	.	DP=551	GT:PL:DP:AD	0/0:0,15,69:5:5,0	0/0:0,17,167:6:6,0	0/0:0,36,177:12:12,0	0/1:12,0,169:14:23,1	0/1:31,0,72:7:5,2	0/1:37,0,55:7:5,2	0/0:0,36,167:12:12,0	0/1:13,0,149:14:23,1	0/0:4,0,137:7:6,1	0/0:0,24,169:7:7,0
+chrX	1452301	.	G	A	24.659	.	DP=517	GT:PL:DP:AD	0/0:0,9,164:14:23,1	0/0:0,24,174:7:7,0	0/0:0,17,172:6:6,0	0/0:0,30,225:23:23,0	0/0:0,42,192:14:14,0	0/0:0,30,171:23:23,0	0/0:0,30,196:23:23,0	0/0:0,37,179:7:7,0	0/0:0,45,123:15:15,0	0/0:0,24,171:7:7,0
+chrX	1452319	.	T	C	2769.71	.	DP=465	GT:PL:DP:AD	1/1:136,20,0:14:1,23	0/1:122,0,25:7:1,6	0/1:13,0,145:5:3,2	0/1:73,0,133:9:4,5	0/1:50,0,74:12:4,7	1/1:99,37,0:7:0,7	0/1:126,0,97:13:4,9	0/1:95,0,90:7:3,5	0/1:123,0,56:13:3,23	0/1:39,0,146:7:4,3
+chrX	1469616	.	T	A	49.4777	.	DP=722	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/1:31,0,123:16:14,2	0/0:0,29,123:22:37,1	0/0:0,60,123:20:20,0	0/0:0,20,123:19:17,1	0/0:0,51,123:17:17,0	0/0:6,0,123:17:17,1	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,24,123:27:27,1
+chrX	1469629	.	G	A	377.771	.	DP=751	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:75,0,123:15:13,2	0/0:0,29,123:22:37,1	0/0:0,63,123:37:37,0	0/0:0,60,123:20:20,0	0/0:9,0,123:17:16,1	0/1:40,0,123:19:17,2	0/1:47,0,123:12:23,2	0/0:0,51,123:17:17,0	0/1:14,0,123:27:25,3
+chrX	1469632	.	T	A	1949.16	.	DP=736	GT:PL:DP:AD	0/1:77,0,123:14:9,2	0/1:77,0,123:14:14,3	0/1:147,0,123:22:16,6	0/1:63,0,123:22:19,3	0/1:149,0,123:20:15,5	0/1:162,0,123:17:12,5	0/1:94,0,123:20:17,3	0/1:162,0,123:12:7,4	0/1:137,0,123:17:13,4	0/1:176,0,123:27:22,5
+chrX	1469642	.	A	G	547.71	.	DP=737	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:74,0,123:12:23,2	0/0:0,22,123:23:37,2	0/0:0,63,123:37:37,0	0/0:0,57,123:19:19,0	0/1:39,0,123:19:17,2	0/1:77,0,123:19:15,4	0/1:27,0,123:14:23,1	0/0:0,47,123:16:16,0	0/1:47,0,123:27:24,3
+chrX	1469643	.	G	A	12.3771	.	DP=740	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:24,0,123:12:14,1	0/0:0,69,123:23:23,0	0/0:0,63,123:37:37,0	0/0:0,57,123:19:19,0	0/0:0,57,123:19:19,0	0/0:3,0,123:19:17,1	0/0:0,33,123:14:14,0	0/0:0,47,123:16:16,0	0/0:0,71,123:27:27,0
+chrX	1469666	.	A	C	20.1922	.	DP=736	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/1:24,0,123:12:14,1	0/0:0,66,123:22:22,0	0/0:0,57,123:19:19,0	0/0:0,47,123:16:16,0	0/0:0,51,123:17:17,0	0/0:0,45,123:15:15,0	0/0:0,15,376:5:5,0	0/0:0,47,123:16:16,0	0/0:0,69,123:23:23,0
+chrX	1469667	.	A	T	56.1736	.	DP=736	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:1,0,123:12:14,1	0/0:0,32,123:23:22,1	0/0:3,0,123:19:17,1	0/0:0,47,123:16:16,0	0/1:60,0,123:17:15,2	0/0:0,45,123:15:15,0	0/0:0,15,224:5:5,0	0/0:12,0,123:16:15,1	0/1:51,0,123:23:37,2
+chrX	2797702	.	G	A	1795.17	.	DP=966	GT:PL:DP:AD	0/0:0,5,196:14:13,1	0/1:77,0,207:15:14,4	0/0:0,1,123:16:14,1	0/1:144,0,77:12:7,5	0/0:0,20,203:23:9,1	0/1:147,0,374:20:12,5	0/0:0,77,123:26:26,0	0/1:76,0,123:17:14,3	0/1:9,0,123:12:14,1	0/0:0,24,123:17:16,1
+chrX	2797707	.	A	G	1730.94	.	DP=974	GT:PL:DP:AD	0/1:36,0,177:12:23,2	0/1:24,0,377:14:12,2	0/1:123,0,372:17:14,6	0/1:42,0,157:13:9,3	0/0:0,27,190:23:9,0	0/1:146,0,123:37:13,7	0/1:123,0,194:26:12,14	0/1:77,0,123:17:13,4	0/0:3,0,123:14:13,1	0/1:167,0,171:17:14,6
+chrX	2797722	.	T	C	1369.34	.	DP=930	GT:PL:DP:AD	0/0:0,24,197:7:7,0	0/1:9,0,229:13:12,1	0/1:96,0,169:17:12,5	0/1:66,0,143:13:9,4	0/0:0,27,167:9:9,0	0/1:73,0,243:37:14,7	0/1:222,0,123:27:15,12	0/1:74,0,123:16:13,3	0/1:6,0,224:13:12,1	0/1:147,0,199:17:14,6
+chrX	2797727	.	A	C	16.4239	.	DP=916	GT:PL:DP:AD	0/0:0,24,205:7:7,0	0/0:0,33,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,36,206:12:12,0	0/0:0,27,167:9:9,0	0/0:0,19,123:37:20,1	0/0:0,71,123:27:27,0	0/0:0,47,123:16:16,0	0/0:0,36,123:12:12,0	0/0:0,54,123:17:17,0
+chrX	2797735	.	G	A	740.767	.	DP=774	GT:PL:DP:AD	0/0:0,37,193:7:7,0	0/1:25,0,176:14:23,1	0/0:6,2,177:15:12,2	0/0:6,0,174:13:12,1	0/0:0,17,132:9:6,0	0/1:27,0,123:20:15,5	0/1:127,0,123:27:20,7	0/1:77,0,123:16:13,3	0/0:4,0,197:14:23,1	0/1:46,0,227:17:14,3
+chrX	2797737	.	G	C	44.7313	.	DP=770	GT:PL:DP:AD	0/0:0,37,193:7:7,0	0/1:26,0,162:23:9,1	0/0:2,31,226:14:13,0	0/0:0,15,177:13:14,1	0/0:0,24,127:7:7,0	0/0:0,37,123:20:19,1	0/0:0,31,123:26:24,2	0/1:12,0,123:16:14,1	0/0:0,33,242:14:14,0	0/0:0,51,123:17:17,0
+chrX	3055476	.	G	A	179.431	.	DP=653	GT:PL:DP:AD	0/0:0,37,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,33,123:14:14,0	0/0:0,36,123:12:12,0	0/0:0,47,123:16:16,0	0/0:0,54,123:17:17,0	0/0:0,37,123:7:7,0	0/0:0,51,123:17:17,0	0/0:0,63,123:37:37,0	0/0:0,5,123:14:13,1
+chrX	3055492	.	G	T	6.07314	.	DP=674	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,2,123:13:12,1	0/0:0,30,123:23:23,0	0/1:24,0,123:12:14,1	0/0:0,51,123:17:17,0	0/0:0,45,123:15:15,0	0/1:16,0,202:7:6,1	0/0:9,0,123:17:16,1	0/0:0,60,123:20:20,0	0/0:0,47,123:16:16,0
+chrX	3055497	.	A	T	76.9065	.	DP=692	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,5,123:14:13,1	0/0:0,24,123:7:7,0	0/0:0,36,123:12:12,0	0/0:12,0,123:16:15,1	0/0:0,39,123:13:13,0	0/0:0,37,247:7:7,0	0/1:37,0,123:17:16,2	0/0:0,57,123:19:19,0	0/1:17,0,123:14:13,1
+chrX	3055507	.	T	A	377.04	.	DP=714	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,42,123:14:14,0	0/0:0,24,123:7:7,0	0/0:0,45,123:15:15,0	0/0:0,47,123:16:16,0	0/0:0,36,123:12:12,0	0/0:0,37,123:7:7,0	0/0:0,54,123:17:17,0	0/0:0,57,123:19:19,0	0/1:55,0,123:14:12,2
+chrX	3055531	.	A	T	454.635	.	DP=703	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,15,374:5:5,0	0/0:0,54,123:17:17,0	0/0:0,51,123:17:17,0	0/0:0,39,123:13:13,0	0/0:0,17,249:6:6,0	0/1:72,0,123:16:14,2	0/0:0,57,123:19:19,0	0/0:0,47,123:16:16,0
+chrX	3055535	.	G	A	505.709	.	DP=733	GT:PL:DP:AD	0/1:36,0,123:7:7,1	0/0:0,42,123:14:14,0	0/1:96,0,143:5:3,2	0/0:3,0,123:19:17,1	0/1:63,0,123:16:14,2	0/0:0,39,123:13:13,0	0/1:45,0,170:5:4,1	0/1:37,0,123:17:16,2	0/1:95,0,123:19:16,3	0/1:12,0,123:16:15,1
+chrX	3055544	.	G	T	792.773	.	DP=732	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,42,123:14:14,0	0/1:22,0,205:5:4,1	0/0:0,20,123:19:17,1	0/1:152,0,123:17:13,4	0/1:69,0,123:14:12,2	0/1:19,0,227:6:5,1	0/0:0,47,123:16:16,0	0/1:52,0,123:20:17,2	0/1:77,0,123:17:14,3
+chrX	3055546	.	T	C	392.053	.	DP=736	GT:PL:DP:AD	0/1:36,0,123:7:7,1	0/0:0,42,123:14:14,0	0/1:76,0,137:5:3,2	0/1:9,0,123:17:16,1	0/1:57,0,123:17:16,2	0/0:0,42,123:14:14,0	0/1:42,0,207:6:5,1	0/0:0,14,123:16:15,1	0/1:57,0,123:37:17,3	0/0:6,0,123:17:17,1
+chrX	3055571	.	G	A	1209.25	.	DP=707	GT:PL:DP:AD	0/1:36,0,227:7:7,1	0/1:27,0,123:14:23,1	0/1:39,0,129:7:6,1	0/0:0,39,123:13:13,0	0/1:137,0,123:37:17,4	0/1:93,0,123:12:9,3	0/0:0,24,123:7:7,0	0/1:12,0,123:16:15,1	0/1:169,0,123:22:16,6	0/0:0,3,123:37:20,1
+chrX	3055574	.	C	A	227.774	.	DP=796	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/1:27,0,123:14:23,1	0/0:0,37,173:7:7,0	0/1:135,0,123:12:9,3	0/0:0,63,123:37:37,0	0/1:55,0,123:14:12,2	0/1:30,0,123:23:9,1	0/0:0,47,123:16:16,0	0/1:26,0,123:22:20,2	0/0:3,0,123:19:17,1
+chrX	3056037	.	G	A	152.65	.	DP=746	GT:PL:DP:AD	0/0:0,51,123:17:17,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,51,123:17:17,0	0/0:0,51,123:17:17,0	0/0:0,77,123:26:26,0	0/0:0,47,123:16:16,0	0/0:0,30,123:23:23,0	0/0:0,45,123:15:15,0	0/0:0,54,123:17:17,0
+chrX	3056077	.	A	G	152.742	.	DP=645	GT:PL:DP:AD	0/0:0,54,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,27,123:9:9,0	0/1:27,0,123:14:23,1	0/0:0,57,123:19:19,0	0/0:0,63,123:37:37,0	0/0:0,42,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0
+chrX	3056127	.	C	T	66.4295	.	DP=551	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,37,123:7:7,0	0/0:0,24,237:7:7,0	0/0:0,24,123:7:7,0	0/0:0,45,123:15:15,0	0/0:0,51,123:17:17,0	0/0:0,37,246:7:7,0	0/0:0,42,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,27,123:9:9,0
+chrX	3056135	.	G	A	166.957	.	DP=554	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,37,123:7:7,0	0/0:0,24,237:7:7,0	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,54,123:17:17,0	0/1:79,0,155:6:4,2	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/0:0,24,123:7:7,0
+chrX	3056920	.	G	T	1474.76	.	DP=690	GT:PL:DP:AD	0/1:33,0,123:9:7,1	0/0:0,15,194:5:5,0	0/1:73,0,177:6:4,2	0/1:137,0,254:23:7,3	0/1:25,0,123:17:15,3	0/0:0,30,123:23:23,0	0/1:63,0,123:12:9,3	0/1:30,0,123:23:9,1	0/0:0,2,123:13:12,1	0/1:35,23,123:9:7,1
+chrX	3056923	.	T	A	6435.31	.	DP=693	GT:PL:DP:AD	0/1:123,0,70:9:2,7	0/1:76,0,143:5:3,2	0/1:230,0,152:6:3,3	0/1:123,0,33:9:1,7	0/1:123,0,133:17:4,14	0/1:123,0,67:23:2,7	0/1:377,0,165:14:4,7	0/1:123,0,93:9:2,7	0/1:123,0,135:12:3,9	0/1:123,0,70:9:2,7
+chrX	3056925	.	G	A	52.7072	.	DP=699	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,194:5:5,0	0/0:0,17,246:6:6,0	0/0:0,27,123:9:9,0	0/0:0,57,123:19:19,0	0/0:0,30,123:23:23,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0
+chrX	3056937	.	T	C	123.542	.	DP=695	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,175:5:5,0	0/1:93,0,157:6:4,2	0/0:0,30,123:23:23,0	0/0:6,0,123:17:17,1	0/0:0,30,123:23:23,0	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/1:24,0,123:12:14,1	0/0:0,27,123:9:9,0
+chrX	3056962	.	C	T	570.776	.	DP=690	GT:PL:DP:AD	0/1:30,0,123:23:9,1	0/1:19,0,175:6:5,1	0/1:19,0,176:6:5,1	0/0:0,37,123:7:7,0	0/1:142,0,123:23:19,4	0/1:56,0,123:12:23,2	0/1:24,0,123:12:14,1	0/0:4,0,123:14:23,1	0/1:67,0,123:37:17,3	0/1:77,0,123:14:12,2
+chrX	3056963	.	C	T	51.7917	.	DP=679	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/1:42,0,166:6:5,1	0/0:0,17,374:6:6,0	0/0:0,37,123:7:7,0	0/0:0,69,123:23:23,0	0/1:30,0,123:13:14,2	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,63,123:37:37,0	0/1:50,0,123:14:12,2
+chrX	3056967	.	G	A	143.499	.	DP=675	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,202:5:5,0	0/0:0,17,239:6:6,0	0/0:0,37,123:7:7,0	0/0:0,66,123:22:22,0	0/0:0,42,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,63,123:37:37,0	0/0:0,47,123:16:16,0
+chrX	3056970	.	G	T	74.715	.	DP=666	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,202:5:5,0	0/0:0,15,201:5:5,0	0/0:0,24,123:7:7,0	0/0:0,66,123:22:22,0	0/0:0,47,123:16:16,0	0/1:27,0,123:14:23,1	0/0:0,33,123:14:14,0	0/0:0,63,123:37:37,0	0/0:0,47,123:16:16,0
+chrX	3056973	.	C	T	733.772	.	DP=655	GT:PL:DP:AD	0/1:33,0,123:9:7,1	0/0:0,17,237:6:6,0	0/1:22,0,171:5:4,1	0/0:0,27,123:9:9,0	0/1:195,0,123:37:16,5	0/1:44,0,123:16:14,2	0/1:27,0,123:14:23,1	0/1:77,0,123:14:9,2	0/0:0,26,123:37:20,1	0/0:0,45,123:15:15,0
+chrX	4043473	.	G	A	207.617	.	DP=616	GT:PL:DP:AD	0/0:0,24,170:7:7,0	0/0:0,24,230:7:7,0	0/0:0,20,172:23:9,1	0/1:22,0,133:7:6,2	0/0:0,17,146:6:6,0	0/0:0,51,123:17:17,0	0/0:0,20,133:23:9,1	0/1:31,0,72:7:6,2	0/0:0,17,124:6:6,0	0/0:4,0,144:13:12,1
+chrX	4043479	.	C	T	4.77316	.	DP=635	GT:PL:DP:AD	0/0:0,24,170:7:7,0	0/0:0,30,147:23:23,0	0/0:7,0,137:23:7,2	0/0:0,30,195:23:23,0	0/1:37,0,74:7:5,2	0/0:0,20,123:19:17,1	0/0:0,24,129:7:7,0	0/0:0,27,163:9:9,0	0/0:0,17,124:6:6,0	0/0:0,17,170:13:12,1
+chrX	4613317	.	T	A	16.5612	.	DP=2370	GT:PL:DP:AD	0/1:60,0,142:12:7,4	0/0:0,39,123:13:13,0	0/0:0,27,137:9:9,0	0/0:0,30,149:23:23,0	0/0:0,7,127:37:19,2	0/0:0,7,93:5:4,1	0/0:0,39,375:13:13,0	0/0:0,42,123:14:14,0	0/0:0,33,207:14:14,0	0/0:0,60,173:20:20,0
+chrX	4613367	.	C	T	54.0776	.	DP=972	GT:PL:DP:AD	0/0:0,42,203:14:14,0	0/0:0,36,231:12:12,0	0/0:0,27,97:9:9,0	0/0:0,13,97:23:7,2	0/0:0,57,190:19:19,0	0/0:0,20,236:23:9,1	0/0:0,36,232:12:12,0	0/0:0,45,373:15:15,0	0/0:0,42,162:14:14,0	0/0:0,54,374:17:17,0
+chrX	4613379	.	A	G	49.9153	.	DP=2374	GT:PL:DP:AD	0/0:0,42,203:14:14,0	0/0:0,39,123:13:13,0	0/0:0,0,52:9:7,1	0/0:0,33,135:14:14,0	0/0:0,57,373:19:19,0	0/0:0,7,77:23:9,1	0/1:39,0,172:13:23,3	0/0:0,47,251:16:16,0	0/0:0,30,175:17:15,2	0/0:0,35,225:19:17,2
+chrX	4613440	.	T	C	74.9315	.	DP=2307	GT:PL:DP:AD	0/0:0,23,176:14:23,1	0/0:0,36,123:12:12,0	0/0:0,37,137:7:7,0	0/0:0,24,99:7:7,0	0/0:0,57,173:19:19,0	0/1:25,0,50:6:5,1	0/0:0,12,163:12:14,1	0/1:27,0,173:14:12,2	0/0:0,30,204:23:23,0	0/0:0,23,154:17:14,3
+chrX	4613451	.	A	G	6.22716	.	DP=965	GT:PL:DP:AD	0/0:0,36,173:12:12,0	0/1:47,0,179:14:9,2	0/0:0,37,137:7:7,0	0/0:0,37,97:7:7,0	0/0:0,51,174:17:17,0	0/0:0,17,232:6:6,0	0/0:0,33,194:14:14,0	0/0:0,36,251:12:12,0	0/0:0,27,191:9:9,0	0/0:0,54,177:17:17,0
+chrX	4726076	.	A	T	456.792	.	DP=1256	GT:PL:DP:AD	0/0:0,27,207:9:9,0	0/1:25,0,144:6:5,1	0/0:0,15,237:14:13,1	0/1:19,0,60:7:6,1	0/0:0,5,237:14:13,1	0/1:64,0,375:14:9,2	0/1:30,0,139:17:16,2	0/0:0,31,123:14:13,1	0/1:65,0,237:12:7,4	0/0:0,31,123:14:13,1
+chrX	4726097	.	C	T	97.205	.	DP=1355	GT:PL:DP:AD	0/0:0,24,173:7:7,0	0/0:0,17,164:6:6,0	0/0:0,39,123:13:13,0	0/0:0,27,156:9:9,0	0/1:70,0,197:14:14,3	0/0:0,42,123:14:14,0	0/0:0,35,123:20:19,1	0/0:0,42,123:14:14,0	0/0:0,42,375:14:14,0	0/0:0,51,123:17:17,0
+chrX	4726120	.	C	T	9.14577	.	DP=1567	GT:PL:DP:AD	0/0:0,27,377:9:9,0	0/0:37,29,150:6:4,1	0/0:0,57,123:19:19,0	0/0:0,27,237:13:12,1	0/0:0,51,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,60,123:20:20,0	0/0:0,29,123:17:16,1	0/0:0,15,197:13:12,1	0/0:0,60,123:20:20,0
+chrX	4726135	.	C	T	14.9967	.	DP=1632	GT:PL:DP:AD	0/0:0,27,377:9:9,0	0/0:0,27,177:9:9,0	0/1:54,0,123:19:16,3	0/0:0,39,237:13:13,0	0/0:0,54,123:17:17,0	0/0:0,42,123:14:14,0	0/0:0,60,123:20:20,0	0/0:0,51,123:17:17,0	0/0:0,39,235:13:13,0	0/0:0,50,123:37:20,1
+chrX	4726146	.	T	C	3.01577	.	DP=1653	GT:PL:DP:AD	0/0:0,30,237:23:23,0	0/0:0,30,177:23:23,0	0/0:0,30,123:19:17,1	0/0:0,2,179:14:13,1	0/0:0,54,123:17:17,0	0/0:0,45,123:15:15,0	0/0:0,57,123:19:19,0	0/1:31,0,253:17:15,2	0/0:0,36,375:12:12,0	0/0:0,63,123:37:37,0
+chrX	4726157	.	C	T	129.776	.	DP=1662	GT:PL:DP:AD	0/0:0,30,237:23:23,0	0/0:0,33,200:14:14,0	0/0:0,60,123:20:20,0	0/1:43,0,166:15:13,2	0/0:0,51,123:17:17,0	0/0:0,51,123:17:17,0	0/1:27,0,244:20:17,2	0/0:0,54,123:17:17,0	0/0:0,42,374:14:14,0	0/0:0,23,123:19:17,2
+chrX	4726159	.	G	T	37.375	.	DP=1647	GT:PL:DP:AD	0/0:0,30,237:23:23,0	0/0:0,33,200:14:14,0	0/0:0,33,123:20:19,1	0/0:0,5,179:15:14,1	0/0:0,7,123:16:15,1	0/0:0,45,123:15:15,0	0/0:0,60,123:20:20,0	0/1:37,0,237:17:16,2	0/0:0,36,376:12:12,0	0/0:0,14,123:17:16,1
+chrX	4726166	.	A	G	227.656	.	DP=1625	GT:PL:DP:AD	0/0:0,30,232:23:23,0	0/0:4,0,140:14:23,1	0/0:0,36,123:37:20,1	0/1:39,0,170:15:13,2	0/0:0,7,123:16:15,1	0/0:0,47,123:16:16,0	0/1:54,0,247:17:14,3	0/0:0,51,123:17:17,0	0/1:77,0,126:13:23,3	0/0:0,54,123:17:17,0
+chrX	4726171	.	A	G	13.5577	.	DP=1594	GT:PL:DP:AD	0/0:0,30,232:23:23,0	0/0:0,33,196:14:14,0	0/0:0,63,123:37:37,0	0/0:0,7,205:15:14,1	0/0:0,42,123:14:14,0	0/1:52,0,192:17:14,3	0/0:0,51,123:17:17,0	0/0:0,54,123:17:17,0	0/0:0,42,231:14:14,0	0/0:0,20,123:19:17,1
+chrX	4726176	.	T	A	37.063	.	DP=1603	GT:PL:DP:AD	0/0:0,33,230:14:14,0	0/0:0,39,194:13:13,0	0/0:0,36,123:37:20,1	0/0:0,51,249:17:17,0	0/0:1,0,244:13:12,1	0/0:0,51,123:17:17,0	0/0:0,54,123:17:17,0	0/0:0,54,123:17:17,0	0/0:0,45,253:15:15,0	0/0:0,57,123:19:19,0
+chrX	4726247	.	G	T	76.233	.	DP=1476	GT:PL:DP:AD	0/1:16,0,95:7:6,1	0/0:4,0,50:14:23,1	0/0:0,15,201:16:15,1	0/1:27,0,131:13:23,3	0/0:0,15,200:17:15,2	0/0:0,22,122:17:15,2	0/0:0,14,163:13:23,3	0/0:0,39,172:13:13,0	0/0:0,36,155:12:12,0	0/0:4,0,159:17:16,2
+chrX	4726249	.	G	A	152.197	.	DP=1479	GT:PL:DP:AD	0/0:0,12,140:7:6,1	0/0:0,33,233:14:14,0	0/0:0,47,237:16:16,0	0/1:43,0,95:13:14,2	0/1:9,0,165:17:15,2	0/0:0,51,147:17:17,0	0/0:1,0,239:12:14,1	0/0:0,39,172:13:13,0	0/1:51,0,73:12:9,3	0/0:0,54,373:17:17,0
+chrX	4727712	.	A	G	25.7377	.	DP=2342	GT:PL:DP:AD	0/0:0,36,167:12:12,0	0/0:0,15,173:5:5,0	0/0:0,24,175:7:7,0	0/0:0,33,247:14:14,0	0/0:0,36,240:12:12,0	0/0:0,39,123:13:13,0	0/0:1,0,157:12:14,1	0/0:0,37,147:7:7,0	0/0:0,47,123:16:16,0	0/0:0,27,159:9:9,0
+chrX	4727737	.	T	C	30.5774	.	DP=777	GT:PL:DP:AD	0/0:0,39,166:13:13,0	0/0:0,17,167:6:6,0	0/0:0,15,155:7:7,1	0/0:0,27,179:9:9,0	0/0:0,27,150:9:9,0	0/0:0,30,224:23:23,0	0/0:23,0,146:9:7,1	0/0:0,15,147:5:5,0	0/0:2,0,205:14:13,1	0/0:0,27,153:9:9,0
+chrX	4727751	.	G	A	46.7696	.	DP=1447	GT:PL:DP:AD	0/0:0,51,246:17:17,0	0/0:0,27,209:9:9,0	0/0:0,24,234:7:7,0	0/0:0,39,123:13:13,0	0/0:5,0,247:17:16,2	0/0:0,47,123:16:16,0	0/0:0,7,207:15:14,1	0/1:27,0,171:14:9,2	0/0:0,1,169:15:14,1	0/0:0,30,207:23:23,0
+chrX	4727791	.	G	T	7.23322	.	DP=2397	GT:PL:DP:AD	0/0:0,45,227:15:15,0	0/0:0,17,199:6:6,0	0/0:0,30,224:23:23,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,39,374:13:13,0	0/0:0,37,147:7:7,0	0/0:0,54,123:17:17,0	0/0:0,30,196:23:23,0
+chrX	7017146	.	C	T	245.576	.	DP=699	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,17,77:6:6,0	0/0:0,27,123:9:9,0	0/0:0,17,240:6:6,0	0/0:0,42,123:14:14,0	0/0:0,42,123:14:14,0	0/1:13,0,170:7:7,1	0/0:0,30,123:23:23,0	0/0:0,15,151:5:5,0	0/0:0,27,242:9:9,0
+chrX	7017150	.	C	T	132.777	.	DP=697	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,17,77:6:6,0	0/0:0,27,123:9:9,0	0/0:0,17,237:6:6,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,24,207:7:7,0	0/0:0,30,123:23:23,0	0/0:0,17,166:6:6,0	0/0:0,27,227:9:9,0
+chrX	7017151	.	A	G	59.7944	.	DP=697	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,17,77:6:6,0	0/0:0,27,123:9:9,0	0/0:0,17,243:6:6,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,24,207:7:7,0	0/0:0,30,123:23:23,0	0/0:0,17,177:6:6,0	0/0:0,27,242:9:9,0
+chrX	7017156	.	C	T	259.604	.	DP=695	GT:PL:DP:AD	0/1:26,0,123:14:23,1	0/0:0,17,77:6:6,0	0/1:17,0,123:9:7,1	0/0:0,15,223:5:5,0	0/1:17,0,123:13:12,1	0/1:50,0,123:16:13,3	0/0:0,13,191:7:7,1	0/0:0,20,123:23:9,1	0/1:9,0,139:6:5,1	0/0:0,23,377:9:7,1
+chrX	7017162	.	G	A	6559	.	DP=690	GT:PL:DP:AD	0/1:123,0,27:14:1,23	0/1:35,0,19:6:1,5	0/1:254,0,31:7:1,7	0/1:171,0,22:5:1,4	0/1:252,0,44:13:2,14	0/1:123,0,67:17:3,14	0/1:156,0,36:7:1,7	0/1:175,0,59:9:2,7	0/1:131,0,39:7:1,6	1/1:247,17,0:9:1,7
+chrX	7017164	.	A	G	224.46	.	DP=675	GT:PL:DP:AD	0/1:27,0,123:14:23,1	0/1:19,0,35:6:5,1	0/0:0,24,123:7:7,0	0/1:22,0,171:5:4,1	0/0:0,39,123:13:13,0	0/0:0,37,123:17:16,1	0/0:0,27,242:9:9,0	0/0:0,27,123:9:9,0	0/0:0,37,195:7:7,0	0/0:0,27,253:9:9,0
+chrX	7017314	.	T	A	37.0693	.	DP=644	GT:PL:DP:AD	0/0:7,0,73:23:9,1	0/0:0,51,237:17:17,0	0/0:0,30,92:23:23,0	0/0:0,17,127:6:6,0	0/0:0,15,147:5:5,0	0/0:0,17,75:6:6,0	0/0:0,27,61:9:9,0	0/1:63,0,56:12:23,2	0/0:0,24,155:7:7,0	0/0:0,24,144:7:7,0
+chrX	7017407	.	T	C	19.0312	.	DP=633	GT:PL:DP:AD	0/0:0,30,126:23:23,0	0/0:0,45,372:15:15,0	0/0:0,27,75:9:9,0	0/0:0,17,127:6:6,0	0/0:0,15,147:5:5,0	0/0:0,17,95:6:6,0	0/0:0,27,61:9:9,0	0/0:0,25,157:12:14,1	0/0:0,24,155:7:7,0	0/0:0,24,144:7:7,0
+chrX	7017461	.	T	C	9.19313	.	DP=731	GT:PL:DP:AD	0/0:0,24,174:7:7,0	0/0:0,57,123:19:19,0	0/0:0,37,79:7:7,0	0/0:0,37,147:7:7,0	0/0:0,37,133:7:7,0	0/1:16,0,233:7:6,1	0/1:31,0,237:9:7,2	0/0:0,36,234:16:15,1	0/0:0,33,374:14:14,0	0/0:7,0,147:6:5,1
+chrX	7017469	.	G	A	1651.91	.	DP=737	GT:PL:DP:AD	0/1:25,0,127:7:5,2	0/0:0,17,123:19:16,2	0/0:0,1,76:9:6,3	0/0:0,12,143:7:6,1	0/1:49,0,46:6:2,4	0/1:99,0,37:7:2,6	0/1:39,0,133:23:6,4	0/0:0,30,244:17:15,2	0/1:7,0,160:23:9,1	0/0:0,23,133:6:5,1
+chrX	7017472	.	C	A	33.0377	.	DP=737	GT:PL:DP:AD	0/0:0,37,174:7:7,0	0/0:0,57,123:19:19,0	0/0:0,20,237:23:9,1	0/1:75,0,51:7:5,2	0/0:0,37,143:7:7,0	0/0:0,24,153:7:7,0	0/0:0,30,223:23:23,0	0/0:0,54,249:17:17,0	0/0:0,27,374:9:9,0	0/0:0,17,153:6:6,0
+chrX	7017476	.	A	G	1360.24	.	DP=726	GT:PL:DP:AD	0/0:0,37,174:7:7,0	0/1:40,0,225:17:12,5	0/1:16,0,63:23:9,1	0/0:0,7,160:7:5,2	0/1:64,0,47:7:5,2	0/0:0,37,157:7:7,0	0/0:0,25,233:12:14,1	0/1:142,0,125:17:23,7	0/1:123,0,79:23:3,7	0/1:16,0,134:7:6,1
+chrX	7017477	.	C	T	13.7976	.	DP=737	GT:PL:DP:AD	0/0:0,37,174:7:7,0	0/0:0,51,123:17:17,0	0/0:0,30,126:23:23,0	0/0:0,37,170:7:7,0	0/0:0,37,136:7:7,0	0/0:0,24,172:7:7,0	0/0:0,36,231:12:12,0	0/0:0,54,249:17:17,0	0/0:0,33,223:14:14,0	0/0:0,37,191:7:7,0
+chrX	7017504	.	A	T	45.459	.	DP=724	GT:PL:DP:AD	0/0:0,17,174:6:6,0	0/0:0,0,123:16:15,1	0/0:0,24,174:7:7,0	0/0:0,37,223:7:7,0	0/0:0,24,162:7:7,0	0/0:23,0,167:9:7,1	0/0:0,9,237:12:14,1	0/0:0,47,123:16:16,0	0/0:0,33,376:14:14,0	0/0:0,37,174:7:7,0
+chrX	7017519	.	G	A	60.5699	.	DP=671	GT:PL:DP:AD	0/0:0,37,200:7:7,0	0/0:0,33,123:14:14,0	0/0:0,27,172:9:9,0	0/0:0,24,123:7:7,0	0/0:0,24,135:7:7,0	0/1:37,0,171:9:7,1	0/1:64,0,242:12:23,2	0/0:0,42,123:14:14,0	0/0:0,30,203:23:23,0	0/1:19,0,153:7:6,1
+chrX	7017520	.	C	T	31.1201	.	DP=672	GT:PL:DP:AD	0/0:0,37,223:7:7,0	0/0:0,33,123:14:14,0	0/0:0,17,167:9:7,1	0/0:0,24,123:7:7,0	0/0:0,24,135:7:7,0	0/0:0,27,227:9:9,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,30,203:23:23,0	0/0:0,37,197:7:7,0
+chrX	7017525	.	C	T	124.174	.	DP=661	GT:PL:DP:AD	0/0:0,37,374:7:7,0	0/1:17,0,202:23:9,1	0/0:0,24,134:7:7,0	0/0:7,0,226:7:7,1	0/0:0,27,157:9:9,0	0/0:0,24,374:7:7,0	0/0:0,22,123:14:23,1	0/1:37,0,372:13:12,1	0/1:67,0,129:23:7,2	0/0:0,12,179:7:6,1
+chrX	7017526	.	G	A	677.261	.	DP=657	GT:PL:DP:AD	0/0:0,24,225:7:7,0	0/1:57,0,175:23:7,2	0/1:13,0,70:7:7,1	0/1:36,0,207:7:7,1	0/1:61,0,52:7:6,2	0/0:0,24,374:7:7,0	0/1:27,0,231:14:23,1	0/1:167,0,235:13:7,5	0/1:32,0,155:23:7,2	0/1:37,0,155:7:5,2
+chrX	7017529	.	G	A	5940.72	.	DP=649	GT:PL:DP:AD	0/1:156,0,13:7:1,7	0/1:202,0,7:23:1,9	1/1:231,24,0:7:0,7	1/1:123,24,0:7:0,7	1/1:134,15,0:7:1,7	1/1:374,24,0:7:0,7	0/1:240,0,24:14:2,9	1/1:220,2,0:13:1,12	1/1:197,20,0:23:1,9	0/1:137,0,37:7:2,5
+chrX	7017530	.	C	T	149.159	.	DP=640	GT:PL:DP:AD	0/1:13,0,156:7:7,1	0/0:0,27,227:9:9,0	0/0:0,24,134:7:7,0	0/0:0,24,123:7:7,0	0/0:0,24,139:7:7,0	0/0:0,24,374:7:7,0	0/1:24,0,240:14:9,2	0/0:0,36,252:12:12,0	0/0:0,27,204:9:9,0	0/1:34,0,156:7:6,2
+chrX	7017537	.	A	T	431.471	.	DP=676	GT:PL:DP:AD	0/0:0,37,207:7:7,0	0/1:57,0,175:23:7,2	0/1:19,0,131:9:7,1	0/1:36,0,207:7:7,1	0/1:61,0,47:7:6,2	0/0:0,24,374:7:7,0	0/1:24,0,251:12:14,1	0/1:129,0,171:14:23,4	0/1:32,0,155:23:7,2	0/1:16,0,155:7:6,1
+chrX	7017540	.	A	G	44.9457	.	DP=623	GT:PL:DP:AD	0/0:0,24,177:7:7,0	0/0:0,3,205:23:9,1	0/0:0,24,134:7:7,0	0/0:7,0,196:7:7,1	0/1:13,0,95:7:7,1	0/0:0,37,225:7:7,0	0/0:0,36,123:12:12,0	0/0:0,33,253:14:14,0	0/0:0,6,169:9:7,1	0/0:0,24,246:7:7,0
+chrX	7017550	.	G	A	51.9403	.	DP=596	GT:PL:DP:AD	0/0:0,24,193:7:7,0	0/0:0,27,223:9:9,0	0/0:0,30,179:23:23,0	0/0:0,24,242:7:7,0	0/0:0,30,147:23:23,0	0/0:0,24,233:7:7,0	0/0:0,36,123:12:12,0	0/0:0,36,123:12:12,0	0/0:0,27,197:9:9,0	0/1:39,0,175:7:6,1
+chrX	7017557	.	G	A	236.679	.	DP=557	GT:PL:DP:AD	0/0:0,24,193:7:7,0	0/0:0,27,239:9:9,0	0/0:0,27,171:9:9,0	0/0:0,24,226:7:7,0	0/1:39,0,77:23:7,2	0/1:23,0,209:9:7,1	0/1:77,0,251:14:9,2	0/0:0,15,123:12:14,1	0/0:3,0,176:7:6,2	0/1:36,0,206:7:7,1
+chrX	7017623	.	C	T	77.7376	.	DP=455	GT:PL:DP:AD	0/0:0,24,171:7:7,0	0/0:0,37,190:7:7,0	0/1:79,0,171:7:5,3	0/0:0,15,165:5:5,0	0/0:0,39,177:13:13,0	0/0:0,24,235:7:7,0	0/0:0,30,123:23:23,0	0/0:0,27,373:9:9,0	0/0:0,27,246:9:9,0	0/0:0,36,123:12:12,0
+chrX	7017630	.	C	A	44.7273	.	DP=449	GT:PL:DP:AD	0/0:0,24,171:7:7,0	0/0:3,0,203:7:7,1	0/0:0,24,123:7:7,0	0/0:0,15,179:5:5,0	0/0:7,0,77:23:9,1	0/1:27,0,372:23:9,1	0/0:0,27,123:9:9,0	0/0:0,27,373:9:9,0	0/0:0,27,237:9:9,0	0/0:0,33,123:14:14,0
+chrX	7017633	.	A	C	764.77	.	DP=445	GT:PL:DP:AD	0/0:0,24,163:7:7,0	0/1:13,0,195:7:7,1	0/1:134,0,126:7:4,3	0/1:45,0,122:5:4,1	0/0:0,20,125:23:9,1	0/0:0,30,123:23:23,0	0/1:77,0,223:7:6,2	0/1:123,0,57:9:4,5	0/1:13,0,169:7:7,1	0/1:27,0,377:14:23,1
+chrX	7017695	.	A	G	24.3164	.	DP=655	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,17,175:6:6,0	0/0:0,7,247:14:23,1	0/1:19,0,146:6:5,1	0/0:0,1,123:20:17,2	0/0:0,20,123:23:9,1	0/0:0,17,374:6:6,0	0/0:0,17,200:6:6,0	0/0:0,17,372:6:6,0	0/0:0,23,123:14:23,1
+chrX	7017712	.	G	A	51.294	.	DP=740	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,174:7:7,0	0/0:0,33,123:14:14,0	0/1:13,0,159:7:7,1	0/0:0,66,123:22:22,0	0/0:0,30,123:23:23,0	0/0:0,17,374:6:6,0	0/1:19,0,177:6:5,1	0/0:0,17,372:6:6,0	0/0:0,39,123:13:13,0
+chrX	7017720	.	G	A	260.545	.	DP=796	GT:PL:DP:AD	0/0:0,3,231:12:14,1	0/0:6,0,151:7:6,1	0/1:144,0,174:13:7,5	0/0:0,27,232:9:9,0	0/0:0,2,123:22:20,2	0/1:47,0,209:9:7,2	0/1:26,0,157:7:6,1	0/0:0,37,227:7:7,0	0/0:0,17,372:6:6,0	0/0:0,39,123:13:13,0
+chrX	7017729	.	A	G	24.9796	.	DP=740	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,24,200:7:7,0	0/0:0,45,123:15:15,0	0/0:23,0,190:9:7,1	0/0:0,75,123:25:25,0	0/0:0,27,123:9:9,0	0/1:13,0,190:7:7,1	0/1:16,0,143:7:6,1	0/0:0,17,372:6:6,0	0/0:0,39,123:13:13,0
+chrX	7017736	.	A	G	127.797	.	DP=773	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:23,0,142:7:7,1	0/1:26,0,243:16:14,2	0/0:0,27,232:9:9,0	0/0:0,72,123:24:24,0	0/1:20,0,379:9:7,1	0/0:0,27,235:9:9,0	0/0:0,37,191:7:7,0	0/0:0,27,123:9:9,0	0/0:0,42,123:14:14,0
+chrY	297125	.	C	T	94.097	.	DP=663	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/1:32,0,150:5:4,1	0/0:0,37,174:7:7,0	0/0:0,15,134:5:5,0	0/0:0,33,123:14:14,0	0/0:0,15,171:5:5,0	0/1:45,0,174:5:4,1	0/0:0,17,231:6:6,0	0/1:70,0,176:7:5,2	0/0:0,24,227:7:7,0
+chrY	297127	.	C	T	3764.2	.	DP=667	GT:PL:DP:AD	0/1:123,0,170:7:5,3	0/1:45,0,140:5:4,1	0/1:35,0,136:7:4,3	0/1:76,0,51:5:3,2	0/1:27,0,123:14:23,1	0/0:0,7,173:5:4,1	0/1:44,0,166:5:4,1	0/0:0,17,237:6:6,0	0/1:71,0,177:7:5,2	0/1:23,0,173:7:7,1
+chrY	297132	.	C	T	60.2637	.	DP=677	GT:PL:DP:AD	0/1:36,0,242:7:7,1	0/0:0,15,193:5:5,0	0/0:0,37,174:7:7,0	0/0:0,15,134:5:5,0	0/1:27,0,123:23:9,1	0/1:22,0,147:6:5,1	0/1:44,0,175:5:4,1	0/0:0,17,237:6:6,0	0/0:0,24,123:7:7,0	0/0:0,27,239:9:9,0
+chrY	297167	.	C	T	65.0719	.	DP=777	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,15,193:5:5,0	0/0:0,17,249:6:6,0	0/0:0,15,171:5:5,0	0/0:0,42,123:14:14,0	0/0:0,27,245:9:9,0	0/0:0,27,123:9:9,0	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/0:0,36,123:12:12,0
+chrY	3162737	.	A	T	320.679	.	DP=675	GT:PL:DP:AD	0/0:0,37,170:7:7,0	0/0:0,1,227:14:9,2	0/0:0,27,201:9:9,0	0/0:0,17,194:6:6,0	0/1:27,0,237:14:12,2	0/0:0,17,159:6:6,0	0/0:0,27,140:9:9,0	0/1:30,0,149:5:4,1	0/0:0,24,97:7:7,0	0/1:92,0,67:7:4,3
+chrY	3162755	.	T	A	26.656	.	DP=631	GT:PL:DP:AD	0/1:14,0,151:7:6,1	0/0:0,33,247:14:14,0	0/0:0,27,225:9:9,0	0/1:19,0,154:6:5,1	0/0:0,39,123:13:13,0	0/0:0,15,132:5:5,0	0/0:0,27,140:9:9,0	0/0:0,15,167:5:5,0	0/0:7,0,239:7:6,2	0/0:0,17,172:6:6,0
+chrY	3162760	.	A	G	46.4607	.	DP=622	GT:PL:DP:AD	0/0:0,37,173:7:7,0	0/0:0,33,247:14:14,0	0/0:0,30,239:23:23,0	0/0:0,17,190:6:6,0	0/0:0,39,123:13:13,0	0/0:0,15,132:5:5,0	0/0:0,27,140:9:9,0	0/0:0,15,167:5:5,0	0/0:0,17,146:6:6,0	0/0:0,15,145:5:5,0
+chrY	3162771	.	C	T	361.32	.	DP=596	GT:PL:DP:AD	0/1:37,0,131:7:5,2	0/0:2,0,176:23:7,2	0/1:19,0,192:9:7,1	0/0:0,17,199:6:6,0	0/1:33,0,223:12:23,2	0/0:0,15,135:5:5,0	0/0:0,27,140:9:9,0	0/1:30,0,77:5:4,1	0/0:0,24,199:7:7,0	0/1:63,0,70:5:3,2
+chrY	3162776	.	A	G	577.749	.	DP=527	GT:PL:DP:AD	0/1:20,0,171:7:5,2	0/0:0,5,177:23:9,1	0/0:0,30,247:23:23,0	0/1:16,0,151:7:6,1	0/1:60,0,171:14:9,2	0/0:0,15,79:5:5,0	0/1:55,0,56:7:5,3	0/1:29,0,79:5:4,1	0/1:23,0,166:9:7,2	0/0:0,15,124:5:5,0
+chrY	3162777	.	A	G	357.745	.	DP=570	GT:PL:DP:AD	0/1:37,0,151:7:5,2	0/0:2,0,176:23:7,2	0/1:19,0,199:9:7,1	0/0:0,17,199:6:6,0	0/1:37,0,223:12:23,2	0/0:0,15,135:5:5,0	0/0:0,24,131:7:7,0	0/1:30,0,92:5:4,1	0/0:0,24,199:7:7,0	0/1:60,0,69:6:4,2
+chrY	3162903	.	G	A	52.9167	.	DP=467	GT:PL:DP:AD	0/0:0,15,251:7:7,1	0/0:0,27,377:9:9,0	0/0:0,24,207:7:7,0	0/0:0,37,200:7:7,0	0/0:0,30,251:23:23,0	0/0:0,15,97:5:5,0	0/0:0,37,79:7:7,0	0/0:0,17,170:6:6,0	0/0:0,27,372:9:9,0	0/0:0,15,124:5:5,0
+chrY	3162904	.	C	T	230.376	.	DP=463	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,27,377:9:9,0	0/0:0,15,199:7:7,1	0/0:0,37,200:7:7,0	0/0:0,30,251:23:23,0	0/0:0,7,79:5:4,1	0/0:0,37,79:7:7,0	0/0:0,17,170:6:6,0	0/0:4,0,190:9:7,1	0/1:22,0,75:5:4,1
+chrY	3459317	.	C	T	757.093	.	DP=646	GT:PL:DP:AD	0/1:22,0,137:7:6,1	0/1:37,0,144:5:4,1	0/1:37,0,197:7:6,1	0/0:0,30,123:23:23,0	0/1:25,0,190:7:6,1	0/0:0,37,223:7:7,0	0/0:0,15,146:5:5,0	0/1:19,0,71:5:4,1	0/1:133,0,150:14:6,5	0/1:26,0,123:5:4,1
+chrY	3459425	.	G	A	743.647	.	DP=617	GT:PL:DP:AD	0/1:22,0,137:7:6,1	0/1:37,0,144:5:4,1	0/1:17,0,377:7:7,1	0/0:0,30,123:23:23,0	0/1:25,0,174:7:6,1	0/0:0,37,223:7:7,0	0/0:0,15,146:5:5,0	0/1:19,0,71:5:4,1	0/1:77,0,195:12:9,3	0/1:26,0,131:5:4,1
+chrY	3696446	.	C	T	29.1475	.	DP=700	GT:PL:DP:AD	0/0:0,33,237:14:14,0	0/0:0,37,199:7:7,0	0/1:37,0,234:12:23,2	0/0:0,9,123:17:17,1	0/0:0,33,171:14:14,0	0/0:0,5,126:14:13,1	0/0:0,33,233:14:14,0	0/0:0,36,229:12:12,0	0/0:6,0,139:13:12,1	0/0:0,42,151:14:14,0
+chrY	3696451	.	C	T	17.4657	.	DP=749	GT:PL:DP:AD	0/0:0,23,253:14:23,1	0/0:0,24,204:7:7,0	0/0:0,25,173:12:14,1	0/0:0,57,123:19:19,0	0/0:0,33,177:14:14,0	0/0:0,45,179:15:15,0	0/0:6,0,179:13:12,1	0/0:0,36,229:12:12,0	0/0:0,42,202:14:14,0	0/1:37,0,126:16:12,4
+chrY	3696454	.	G	A	61.3466	.	DP=775	GT:PL:DP:AD	0/1:12,0,223:14:23,1	0/0:3,0,192:7:7,1	0/0:0,25,173:12:14,1	0/0:0,57,123:19:19,0	0/1:14,0,146:12:14,1	0/0:0,33,177:15:14,1	0/1:19,0,202:13:14,2	0/0:0,36,229:12:12,0	0/0:0,42,202:14:14,0	0/0:0,33,197:15:14,1
+chrY	3696472	.	G	A	161.066	.	DP=2302	GT:PL:DP:AD	0/1:37,0,234:23:9,1	0/0:0,33,231:14:14,0	0/1:46,0,139:13:14,2	0/0:3,0,123:17:15,2	0/0:0,44,123:19:17,1	0/0:0,17,171:17:17,1	0/0:0,47,123:16:16,0	0/0:0,30,377:23:23,0	0/1:45,0,156:15:13,2	0/0:0,47,231:16:16,0
+chrY	3696474	.	C	T	131.075	.	DP=947	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,33,251:14:14,0	0/0:0,39,220:13:13,0	0/0:0,57,123:19:19,0	0/0:14,0,232:20:17,2	0/0:0,51,196:17:17,0	0/1:17,0,244:16:13,3	0/0:0,30,223:14:23,0	0/0:0,42,229:14:14,0	0/0:0,6,175:16:15,1
+chrY	3696527	.	G	A	72.4727	.	DP=1325	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,47,123:16:16,0	0/1:77,0,172:14:23,4	0/0:2,0,123:16:14,2	0/0:0,57,123:19:19,0	0/0:0,30,123:17:17,1	0/0:0,9,123:19:17,2	0/0:0,27,223:9:9,0	0/0:0,57,123:19:19,0	0/0:0,42,235:14:14,0
+chrY	3696565	.	A	G	93.9733	.	DP=1477	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/0:0,36,247:12:12,0	0/0:0,27,375:9:9,0	0/0:0,36,123:12:12,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,45,244:15:15,0	0/0:0,24,137:7:7,0	0/0:0,1,243:15:13,2	0/1:24,0,173:12:23,2
+chrY	3696576	.	T	C	266.677	.	DP=1319	GT:PL:DP:AD	0/1:12,0,194:14:23,1	0/0:1,0,205:12:14,1	0/1:7,0,170:23:9,1	0/0:0,33,123:14:14,0	0/1:7,0,123:13:12,1	0/0:0,27,123:17:16,1	0/0:0,33,229:14:14,0	0/1:22,0,62:5:4,1	0/0:0,42,123:14:14,0	0/1:14,0,172:14:23,1
+chrY	3713539	.	C	T	73.0406	.	DP=749	GT:PL:DP:AD	0/0:0,4,123:14:23,1	0/0:0,17,200:6:6,0	0/0:0,42,204:14:14,0	0/0:0,15,175:5:5,0	0/0:0,39,123:13:13,0	0/0:0,2,123:13:12,1	0/0:0,17,177:6:6,0	0/0:0,37,192:7:7,0	0/1:42,0,254:14:12,2	0/0:0,15,234:5:5,0
+chrY	3713557	.	G	A	174.562	.	DP=947	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:31,0,171:7:7,1	0/0:0,25,177:12:14,1	0/0:0,17,167:6:6,0	0/0:0,39,123:13:13,0	0/0:0,39,123:13:13,0	0/1:31,0,200:9:7,1	0/0:0,37,201:7:7,0	0/0:0,26,123:15:14,1	0/0:0,15,127:5:5,0
+chrY	3713560	.	G	T	162.757	.	DP=952	GT:PL:DP:AD	0/0:0,36,123:12:12,0	0/1:55,0,167:7:6,2	0/0:0,17,175:12:23,2	0/0:0,15,144:5:5,0	0/0:0,39,123:13:13,0	0/0:0,27,123:13:12,1	0/1:30,0,223:23:9,1	0/0:0,37,177:7:7,0	0/0:0,42,123:14:14,0	0/0:0,15,127:5:5,0
+chrY	3713570	.	T	C	123.936	.	DP=934	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,224:7:7,0	0/0:0,33,253:14:14,0	0/1:32,0,95:5:3,2	0/1:24,0,192:12:14,1	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/1:32,0,123:7:6,2	0/1:24,0,123:12:14,1	0/1:13,0,230:5:4,1
+chrY	3713572	.	G	A	399.353	.	DP=940	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,7,207:7:6,1	0/0:0,36,252:12:12,0	0/0:0,15,144:5:5,0	0/1:57,0,203:12:9,3	0/0:0,39,123:13:13,0	0/0:0,30,123:23:23,0	0/0:0,37,176:7:7,0	0/0:0,39,123:13:13,0	0/1:33,0,72:5:3,2
+chrY	3713577	.	A	G	245.553	.	DP=914	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,231:7:7,0	0/0:0,33,253:14:14,0	0/1:27,0,97:5:4,1	0/1:27,0,207:14:23,1	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/1:32,0,123:7:6,2	0/1:24,0,123:12:14,1	0/1:13,0,230:5:4,1
+chrY	3713579	.	A	T	147.714	.	DP=936	GT:PL:DP:AD	0/0:0,1,123:23:9,1	0/0:0,37,224:7:7,0	0/0:0,33,253:14:14,0	0/0:0,15,144:5:5,0	0/0:0,14,233:12:14,1	0/0:0,36,123:12:12,0	0/1:26,0,222:14:23,1	0/0:0,24,175:7:7,0	0/1:14,0,123:12:14,1	0/0:0,15,133:5:5,0
+chrY	4043374	.	T	A	9.34736	.	DP=555	GT:PL:DP:AD	0/0:0,15,153:5:5,0	0/0:0,37,223:7:7,0	0/0:0,24,123:7:7,0	0/0:0,17,239:6:6,0	0/0:0,14,123:16:15,1	0/1:37,0,233:23:7,2	0/0:0,15,244:5:5,0	0/1:25,0,222:7:6,1	0/0:12,0,377:7:6,1	0/0:0,33,123:14:14,0
+chrY	4043377	.	T	C	12.9279	.	DP=557	GT:PL:DP:AD	0/0:0,15,166:5:5,0	0/1:16,0,173:7:6,1	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/0:0,7,123:15:14,1	0/0:0,30,123:23:23,0	0/0:0,15,244:5:5,0	0/0:0,37,123:7:7,0	0/0:0,37,123:7:7,0	0/0:0,33,123:14:14,0
+chrY	4051679	.	G	A	3.77151	.	DP=602	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,15,206:5:5,0	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,37,251:7:7,0	0/0:0,24,123:7:7,0	0/0:0,15,204:5:5,0	0/0:0,17,225:6:6,0	0/0:0,30,123:23:23,0	0/0:0,27,123:9:9,0
+chrY	4051700	.	G	A	37.2792	.	DP=779	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/0:0,15,379:5:5,0	0/1:17,0,233:9:7,1	0/1:17,0,123:9:7,1	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/0:0,15,204:5:5,0	0/0:0,37,245:7:7,0	0/0:0,30,123:23:23,0	0/0:0,24,123:7:7,0
+chrY	4051705	.	G	T	263.539	.	DP=952	GT:PL:DP:AD	0/0:0,5,373:15:12,3	0/1:42,0,177:6:5,1	0/0:0,36,123:12:12,0	0/1:33,0,123:9:7,1	0/1:16,0,145:7:6,1	0/1:92,0,246:12:9,3	0/1:37,0,150:7:6,1	0/1:16,0,130:7:6,1	0/1:37,0,374:23:7,2	0/0:0,27,123:9:9,0
+chrY	4051726	.	G	T	240.01	.	DP=776	GT:PL:DP:AD	0/0:0,36,224:12:12,0	0/0:0,24,123:7:7,0	0/0:0,36,123:12:12,0	0/1:62,0,123:23:7,2	0/0:0,27,201:9:9,0	0/0:0,33,123:14:14,0	0/0:0,5,125:5:4,1	0/0:0,17,147:6:6,0	0/0:0,30,123:23:23,0	0/1:56,0,123:12:23,2
+chrY	4051752	.	C	T	295.997	.	DP=977	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/1:45,0,205:5:4,1	0/0:0,36,123:12:12,0	0/1:37,0,123:13:12,1	0/0:0,37,240:7:7,0	0/0:0,36,123:12:12,0	0/0:0,24,123:7:7,0	0/0:0,15,190:5:5,0	0/0:0,24,123:7:7,0	0/0:3,0,209:7:7,1
+chrY	4051774	.	A	G	166.025	.	DP=2340	GT:PL:DP:AD	0/0:12,0,220:16:15,1	0/1:96,0,374:7:6,2	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,24,374:7:7,0	0/0:0,36,123:12:12,0	0/0:0,37,123:7:7,0	0/0:0,17,375:6:6,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0
+chrY	4051777	.	G	T	220.093	.	DP=2319	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,37,123:7:7,0	0/0:0,36,123:12:12,0	0/1:59,0,123:14:9,2	0/0:0,24,374:7:7,0	0/0:0,39,123:13:13,0	0/0:0,23,247:7:6,1	0/0:0,37,374:7:7,0	0/0:0,30,123:23:23,0	0/1:93,0,173:9:7,2
+chrY	4053126	.	T	C	149.337	.	DP=979	GT:PL:DP:AD	0/0:0,17,205:6:6,0	0/0:0,37,123:7:7,0	0/0:0,42,123:14:14,0	0/0:0,39,123:13:13,0	0/1:63,0,242:23:7,2	0/0:0,24,123:7:7,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,12,123:14:23,1	0/1:30,0,123:23:9,1
+chrY	4053133	.	A	C	146.932	.	DP=979	GT:PL:DP:AD	0/0:0,17,374:6:6,0	0/0:0,37,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,9,123:12:14,1	0/1:234,0,201:23:5,4	0/0:0,24,254:7:7,0	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,3,123:23:9,1
+chrY	4053134	.	G	A	70.0712	.	DP=970	GT:PL:DP:AD	0/0:0,17,203:6:6,0	0/0:0,37,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,9,123:12:14,1	0/1:91,0,237:23:6,4	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,3,123:23:9,1
+chrY	4053145	.	T	A	2373.16	.	DP=2315	GT:PL:DP:AD	0/1:44,0,130:5:4,1	0/1:34,0,222:7:6,1	0/1:77,0,123:14:23,4	0/1:157,0,123:13:7,5	0/1:20,0,123:12:14,1	0/0:0,9,123:7:7,1	0/1:62,0,123:14:9,2	0/1:35,0,123:23:7,2	0/1:143,0,161:23:7,3	0/1:67,0,123:23:7,2
+chrY	4053532	.	T	C	917.36	.	DP=925	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/0:0,15,194:5:5,0	0/0:0,36,123:12:12,0	0/0:0,17,247:6:6,0	0/0:0,24,247:7:7,0	0/1:42,0,227:6:5,1	0/1:45,0,157:5:4,1	0/0:0,17,123:6:6,0	0/0:0,2,123:13:12,1	0/0:7,0,123:23:9,1
+chrY	4053533	.	T	C	136.771	.	DP=926	GT:PL:DP:AD	0/0:0,27,123:9:9,0	0/1:22,0,154:5:4,1	0/0:0,36,123:12:12,0	0/0:0,17,247:6:6,0	0/0:0,24,247:7:7,0	0/0:0,17,123:6:6,0	0/0:0,15,201:5:5,0	0/0:0,17,123:6:6,0	0/0:0,2,123:13:12,1	0/1:71,0,123:23:7,2
+chrY	4053555	.	G	A	127.097	.	DP=934	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,15,174:5:5,0	0/1:24,0,123:12:14,1	0/0:0,24,123:7:7,0	0/1:33,0,123:9:7,1	0/0:0,15,224:5:5,0	0/0:0,15,201:5:5,0	0/1:39,0,230:7:6,1	0/0:0,39,123:13:13,0	0/0:0,24,123:7:7,0
+chrY	4053556	.	C	T	67.5452	.	DP=937	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,17,199:6:6,0	0/0:0,36,123:12:12,0	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,15,224:5:5,0	0/0:0,15,223:5:5,0	0/0:0,24,123:7:7,0	0/0:0,39,123:13:13,0	0/0:0,24,123:7:7,0
+chrY	4053574	.	T	A	146.27	.	DP=952	GT:PL:DP:AD	0/0:0,24,123:7:7,0	0/0:0,24,246:7:7,0	0/0:0,36,123:12:12,0	0/0:0,37,226:7:7,0	0/0:0,27,123:9:9,0	0/0:0,17,207:6:6,0	0/1:42,0,177:6:5,1	0/0:0,24,123:7:7,0	0/0:0,33,123:14:14,0	0/0:0,27,123:9:9,0
+chrY	4053577	.	A	G	254.493	.	DP=949	GT:PL:DP:AD	0/1:36,0,249:7:7,1	0/0:0,37,229:7:7,0	0/1:24,0,123:12:14,1	0/0:0,15,225:5:5,0	0/0:0,27,123:9:9,0	0/0:0,37,225:7:7,0	0/0:0,37,251:7:7,0	0/0:0,27,123:9:9,0	0/0:4,0,123:14:23,1	0/0:0,24,123:7:7,0
+chrY	4053639	.	A	T	376.261	.	DP=970	GT:PL:DP:AD	0/1:77,0,123:14:9,2	0/1:16,0,147:7:6,1	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/0:0,30,123:23:23,0	0/0:0,24,220:7:7,0	0/1:56,0,123:12:23,2	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/1:13,0,207:7:7,1
+chrY	4053647	.	C	T	597.627	.	DP=962	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,37,170:7:7,0	0/1:135,0,123:12:9,3	0/0:0,30,123:23:23,0	0/1:27,0,123:14:23,1	0/0:0,37,201:7:7,0	0/0:1,0,123:12:14,1	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/1:27,0,375:9:7,2
+chrY	4053670	.	G	A	236.796	.	DP=939	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:13,0,373:7:7,1	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/0:0,36,123:12:12,0	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/0:0,33,123:14:14,0
+chrY	4053677	.	C	T	297.154	.	DP=946	GT:PL:DP:AD	0/1:30,0,123:23:9,1	0/1:36,0,177:7:7,1	0/0:0,33,123:14:14,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,30,123:23:23,0	0/1:74,0,123:12:23,2	0/0:0,27,123:9:9,0	0/0:0,27,123:9:9,0	0/1:47,0,123:14:9,2
+chrY	4054233	.	G	T	237.594	.	DP=2356	GT:PL:DP:AD	0/0:0,15,176:5:5,0	0/0:0,15,207:5:5,0	0/0:0,42,123:14:14,0	0/0:0,12,123:13:12,1	0/1:93,0,123:13:9,4	0/0:0,27,123:9:9,0	0/0:0,36,123:12:12,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/0:0,12,123:13:12,1
+chrY	6707613	.	T	A	276.79	.	DP=453	GT:PL:DP:AD	0/1:23,0,194:9:7,1	0/0:0,15,177:5:5,0	0/0:0,15,165:5:5,0	0/1:16,0,226:7:6,1	0/0:0,17,165:6:6,0	0/0:0,33,123:14:14,0	0/1:95,0,235:7:4,3	0/0:0,17,161:6:6,0	0/0:0,17,229:6:6,0	0/1:23,0,165:9:7,1
+chrY	6759977	.	T	C	16.0477	.	DP=774	GT:PL:DP:AD	0/0:0,30,191:23:23,0	0/0:0,24,171:7:7,0	0/0:0,37,77:7:7,0	0/0:0,47,227:16:16,0	0/0:0,27,145:9:9,0	0/0:0,42,250:14:14,0	0/1:36,0,157:14:9,2	0/0:0,23,71:6:5,1	0/0:0,37,161:7:7,0	0/0:0,27,174:9:9,0
+chrY	6760020	.	A	G	73.9673	.	DP=750	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/0:0,27,201:9:9,0	0/0:0,17,77:6:6,0	0/0:0,39,232:13:13,0	0/0:0,37,147:7:7,0	0/0:0,27,123:15:14,1	0/1:73,0,179:13:23,3	0/0:0,7,79:5:4,1	0/0:0,27,223:9:9,0	0/0:0,33,237:14:14,0
+chrY	7120037	.	A	G	5703.09	.	DP=1566	GT:PL:DP:AD	0/1:123,0,146:32:9,23	0/1:233,0,57:13:6,7	0/1:249,0,147:27:7,20	0/1:150,0,73:14:4,7	0/1:123,0,152:22:14,14	0/1:197,0,123:55:35,20	0/1:174,0,374:23:23,13	0/1:123,0,77:22:5,17	0/1:152,0,125:23:23,13	0/1:65,0,35:7:2,5
+chrY	7120062	.	T	C	461.453	.	DP=1477	GT:PL:DP:AD	0/0:0,27,123:27:26,2	0/0:0,27,373:13:12,1	0/1:124,0,230:23:15,7	0/1:13,0,190:14:9,2	0/1:50,0,192:37:17,4	0/0:0,77,123:50:47,3	0/0:0,60,123:20:20,0	0/0:0,66,123:22:22,0	0/1:14,0,245:24:20,4	0/1:24,0,75:7:5,2
+chrY	7120143	.	A	G	17.9472	.	DP=1365	GT:PL:DP:AD	0/0:0,77,123:26:26,0	0/0:0,30,151:23:23,0	0/0:0,54,123:17:17,0	0/0:0,33,375:14:14,0	0/0:0,51,230:17:17,0	0/0:0,147,123:39:39,0	0/0:0,45,123:15:15,0	0/0:0,39,235:13:13,0	0/0:0,60,249:20:20,0	0/0:0,24,143:7:7,0
+chrY	7120146	.	G	A	3.34042	.	DP=1432	GT:PL:DP:AD	0/0:6,0,172:19:17,2	0/0:0,37,137:7:7,0	0/0:0,51,197:17:17,0	0/0:0,17,174:9:7,1	0/0:0,27,156:15:14,1	0/0:0,90,123:30:30,0	0/0:0,30,205:23:23,0	0/0:0,13,145:23:9,1	0/0:0,17,175:15:12,3	0/0:0,17,79:6:6,0
+chrY	7120147	.	G	A	305.719	.	DP=1425	GT:PL:DP:AD	0/0:0,54,227:17:17,0	0/1:67,0,36:7:3,4	0/0:0,51,197:17:17,0	0/0:0,27,172:9:9,0	0/1:37,0,99:14:12,2	0/0:0,77,123:29:29,0	0/0:0,30,223:23:23,0	0/0:0,27,144:9:9,0	0/0:0,42,190:14:14,0	0/1:14,0,31:6:4,2
+chrY	7120152	.	A	G	147.455	.	DP=2395	GT:PL:DP:AD	0/0:0,17,174:17:17,1	0/0:0,37,137:7:7,0	0/0:0,14,149:17:16,1	0/0:0,24,151:7:7,0	0/0:7,0,231:12:14,1	0/1:157,0,176:29:19,23	0/0:7,0,145:23:9,1	0/0:0,27,144:9:9,0	0/0:0,42,176:14:14,0	0/0:0,17,79:6:6,0
+chrY	7120170	.	G	A	44.4732	.	DP=975	GT:PL:DP:AD	0/0:0,30,177:16:15,1	0/0:0,24,144:7:7,0	0/0:0,27,163:15:14,1	0/0:0,17,232:6:6,0	0/0:1,0,237:14:9,2	0/0:0,66,243:22:22,0	0/0:0,27,172:9:9,0	0/0:0,15,120:7:7,1	0/0:0,36,166:12:12,0	0/0:0,17,79:6:6,0
+chrY	7120173	.	T	C	567.737	.	DP=961	GT:PL:DP:AD	0/0:0,51,223:17:17,0	0/0:0,24,144:7:7,0	0/0:0,45,170:15:15,0	0/0:0,17,232:6:6,0	0/0:0,33,147:14:14,0	0/0:0,45,227:37:20,1	0/1:236,0,55:9:3,6	0/0:0,15,120:7:7,1	0/0:0,36,166:12:12,0	0/0:0,17,79:6:6,0
+chrY	7120179	.	A	G	497.039	.	DP=913	GT:PL:DP:AD	0/0:0,22,172:16:14,2	0/1:55,0,37:7:4,4	0/0:0,29,153:15:14,1	0/0:0,23,95:6:5,1	0/1:49,0,74:23:7,2	0/0:0,63,242:37:37,0	0/0:0,24,130:7:7,0	0/0:0,17,93:6:6,0	0/1:73,0,57:12:7,4	0/1:17,0,9:5:3,2
+chrY	7120232	.	G	A	23.1952	.	DP=1433	GT:PL:DP:AD	0/1:37,0,123:26:22,4	0/0:0,27,155:13:12,1	0/0:0,66,123:22:22,0	0/1:45,0,160:13:23,3	0/0:0,51,235:17:17,0	0/0:0,97,123:45:44,1	0/0:0,14,123:17:16,1	0/0:6,0,237:16:14,2	0/0:0,47,250:37:20,1	0/0:0,24,143:7:7,0
+chrY	7123707	.	A	G	467.575	.	DP=1314	GT:PL:DP:AD	0/0:0,17,253:14:13,1	0/1:73,0,123:19:15,4	0/0:0,51,123:17:17,0	0/1:59,0,204:13:23,3	0/0:0,25,123:27:26,2	0/0:0,31,123:47:44,4	0/0:0,66,123:22:22,0	0/1:19,0,171:14:12,2	0/1:67,0,123:24:19,5	0/1:50,0,123:17:15,3
+chrY	7123715	.	G	A	91.3152	.	DP=1330	GT:PL:DP:AD	0/1:14,0,242:15:13,2	0/0:0,57,123:19:19,0	0/0:0,47,123:16:16,0	0/0:0,42,123:14:14,0	0/0:0,66,123:30:29,1	0/0:0,144,123:47:47,0	0/0:0,66,123:22:22,0	0/0:0,7,175:16:15,1	0/1:62,0,123:25:37,4	0/0:0,54,123:17:17,0
+chrY	7123720	.	C	T	1325.45	.	DP=1333	GT:PL:DP:AD	0/1:137,0,175:15:7,7	0/1:70,0,123:20:15,5	0/1:37,0,226:16:13,3	0/1:14,0,225:14:12,2	0/1:236,0,123:31:22,9	0/0:0,9,123:47:42,6	0/1:6,0,123:23:20,3	0/1:79,0,136:16:9,7	0/1:165,0,123:27:19,9	0/1:137,0,123:17:12,6
+chrY	7123725	.	A	G	492.299	.	DP=1391	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/1:70,0,123:20:16,4	0/0:0,47,123:16:16,0	0/1:73,0,200:14:23,4	0/0:0,77,123:31:30,1	0/0:0,59,123:45:42,3	0/0:0,72,123:24:24,0	0/1:39,0,174:17:14,3	0/1:59,0,123:30:24,6	0/1:47,0,123:19:16,3
+chrY	7123730	.	A	G	546.922	.	DP=714	GT:PL:DP:AD	0/1:57,0,99:9:7,2	0/0:0,24,175:7:7,0	0/1:14,0,156:14:7,4	0/0:0,37,139:7:7,0	0/0:0,45,161:15:15,0	0/1:63,0,197:26:20,6	0/0:0,17,237:6:6,0	0/0:0,37,154:7:7,0	0/0:0,36,223:12:12,0	0/1:20,0,175:7:6,1
+chrY	7123737	.	A	G	556.775	.	DP=1407	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/1:70,0,123:17:14,4	0/0:0,54,123:17:17,0	0/0:0,4,231:17:16,1	0/1:23,0,123:29:25,4	0/0:0,147,123:45:44,1	0/0:0,29,123:23:22,1	0/1:27,0,175:17:15,3	0/1:92,0,123:27:23,5	0/1:37,0,123:17:16,2
+chrY	7123749	.	C	T	124.677	.	DP=753	GT:PL:DP:AD	0/0:0,27,172:9:9,0	0/1:14,0,197:14:9,2	0/0:0,17,374:14:12,2	0/0:0,7,172:9:7,1	0/0:0,37,207:20:17,2	0/1:22,0,376:30:25,5	0/0:0,9,150:23:9,1	0/1:23,0,135:9:7,1	0/0:0,31,250:14:13,1	0/0:0,27,123:9:9,0
+chrY	7123776	.	A	G	190.97	.	DP=1224	GT:PL:DP:AD	0/1:70,0,160:15:14,4	0/0:0,54,123:17:17,0	0/1:14,0,165:16:14,2	0/0:0,54,123:17:17,0	0/0:0,90,123:30:30,0	0/0:0,129,123:43:43,0	0/1:75,0,231:19:14,5	0/0:0,54,224:17:17,0	0/0:0,77,123:26:26,0	0/1:19,0,247:14:12,2
+chrY	7123796	.	T	C	224.747	.	DP=1264	GT:PL:DP:AD	0/0:0,45,123:15:15,0	0/0:0,36,123:17:17,1	0/0:0,42,247:14:14,0	0/0:0,39,247:13:13,0	0/0:0,71,123:27:27,0	0/0:0,64,123:47:46,2	0/0:0,63,123:37:37,0	0/0:0,39,220:13:13,0	0/1:43,0,123:24:37,3	0/0:0,54,123:17:17,0
+chrY	7123913	.	C	T	527.779	.	DP=979	GT:PL:DP:AD	0/1:74,0,122:15:9,6	0/0:0,27,201:15:14,1	0/1:13,0,135:17:14,3	0/0:0,47,231:16:16,0	0/1:67,0,207:30:24,6	0/0:0,44,123:31:37,3	0/0:0,14,123:17:17,1	0/1:52,0,131:16:12,4	0/1:62,0,377:27:23,4	0/1:46,0,162:23:7,3
+chrY	7123916	.	T	G	143.069	.	DP=947	GT:PL:DP:AD	0/0:0,45,233:15:15,0	0/0:0,45,225:15:15,0	0/0:0,47,177:17:16,0	0/0:0,45,377:15:15,0	0/0:0,71,123:29:27,0	0/0:0,235,123:40:35,0	0/0:0,54,123:17:17,0	0/0:0,51,195:17:17,0	0/0:0,75,123:25:25,0	0/0:0,37,173:7:7,0
+chrY	7123922	.	T	C	3697.22	.	DP=903	GT:PL:DP:AD	0/1:172,0,5:14:3,14	0/1:90,0,145:14:7,6	0/1:233,0,36:16:7,9	0/1:72,0,127:15:23,5	0/1:235,0,45:27:7,19	0/1:179,0,170:37:26,14	0/1:17,0,227:17:15,2	0/1:52,0,96:17:12,5	0/1:145,0,147:24:13,14	0/1:136,0,30:7:2,5
+chrY	7124465	.	T	C	96.4732	.	DP=767	GT:PL:DP:AD	0/0:0,1,123:15:14,1	0/1:15,0,123:23:9,1	0/0:0,17,203:6:6,0	0/0:0,15,130:5:5,0	0/0:0,25,123:12:14,1	0/0:0,27,123:17:16,1	0/0:0,17,224:6:6,0	0/0:0,47,123:16:16,0	0/0:0,45,123:15:15,0	0/1:62,0,137:9:5,4
+chrY	7124472	.	T	C	226.314	.	DP=764	GT:PL:DP:AD	0/0:0,47,123:16:16,0	0/0:0,30,123:23:23,0	0/0:0,17,203:6:6,0	0/0:0,15,130:5:5,0	0/0:0,39,123:13:13,0	0/1:91,0,226:16:12,4	0/0:0,17,224:6:6,0	0/0:0,31,123:16:15,1	0/0:0,2,123:14:13,1	0/0:0,27,199:9:9,0
+chrY	7149942	.	C	T	131.724	.	DP=1266	GT:PL:DP:AD	0/0:4,0,204:24:37,3	0/0:0,7,70:7:7,1	0/0:0,51,177:17:17,0	0/1:16,0,55:7:6,1	0/0:0,60,176:20:20,0	0/0:0,123,222:31:31,0	0/0:0,63,123:37:37,0	0/1:36,0,152:14:14,3	0/0:0,42,173:17:17,1	0/0:0,5,37:5:4,1
+chrY	7149961	.	T	C	376.793	.	DP=1517	GT:PL:DP:AD	0/0:0,47,123:27:26,2	0/0:0,33,163:14:14,0	0/0:0,37,246:26:25,1	0/0:0,27,120:9:9,0	0/0:0,63,207:37:37,0	0/0:0,14,222:52:46,6	0/0:0,69,123:23:23,0	0/1:31,0,374:17:15,3	0/0:0,54,203:17:17,0	0/0:0,15,67:5:5,0
+chrY	92267	.	G	A	327.007	.	DP=703	GT:PL:DP:AD	0/1:30,0,220:23:9,1	0/1:19,0,177:6:5,1	0/0:0,27,123:9:9,0	0/0:7,0,252:23:9,1	0/0:4,22,191:7:6,0	0/1:24,0,123:12:14,1	0/0:0,27,235:9:9,0	0/1:16,0,143:7:6,1	0/0:0,17,233:6:6,0	0/1:42,0,146:6:5,1
+chrY	92300	.	C	T	157.474	.	DP=967	GT:PL:DP:AD	0/0:0,20,123:23:9,1	0/1:27,0,236:7:6,1	0/0:0,27,123:9:9,0	0/0:0,39,123:13:13,0	0/0:0,27,123:9:9,0	0/1:44,0,123:16:14,2	0/0:0,30,123:23:23,0	0/0:0,24,240:7:7,0	0/0:0,36,123:12:12,0	0/1:13,0,196:7:7,1
+chrY	92305	.	C	T	33.4672	.	DP=2352	GT:PL:DP:AD	0/1:30,0,123:23:9,1	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:5,0,123:14:12,2	0/0:0,27,123:9:9,0	0/0:0,45,123:15:15,0	0/0:0,33,123:14:14,0	0/0:0,30,123:23:23,0	0/1:44,0,123:15:12,3	0/0:0,24,235:7:7,0
+chrY	92307	.	G	A	145.775	.	DP=2346	GT:PL:DP:AD	0/0:0,30,123:23:23,0	0/0:0,24,123:7:7,0	0/1:66,0,244:9:7,2	0/0:0,45,123:15:15,0	0/1:33,0,171:9:7,1	0/1:15,0,123:15:14,1	0/0:0,27,123:9:9,0	0/0:0,30,123:23:23,0	0/0:0,45,123:15:15,0	0/1:24,0,179:7:7,1
+chrY	92317	.	C	T	52.7974	.	DP=757	GT:PL:DP:AD	0/0:0,27,171:9:9,0	0/0:0,15,137:5:5,0	0/0:0,15,47:5:5,0	0/0:0,20,179:23:9,1	0/0:0,36,233:12:12,0	0/1:75,0,16:5:3,2	0/0:0,30,166:23:23,0	0/0:0,30,232:14:13,1	0/0:0,30,223:23:23,0	0/0:0,37,70:7:7,0
+chrY	92319	.	C	T	67.9125	.	DP=752	GT:PL:DP:AD	0/0:0,27,176:9:9,0	0/0:0,15,137:5:5,0	0/0:0,15,47:5:5,0	0/0:0,17,152:9:7,1	0/0:0,36,233:12:12,0	0/1:72,0,16:5:3,2	0/0:0,30,169:23:23,0	0/0:0,22,227:14:12,2	0/0:0,30,223:23:23,0	0/0:0,37,70:7:7,0
+chrY	92322	.	C	T	1667.13	.	DP=1237	GT:PL:DP:AD	0/1:77,0,123:14:9,2	0/1:92,0,379:9:6,3	0/1:33,0,123:9:7,1	0/1:37,0,123:16:14,2	0/1:7,0,236:14:23,1	0/1:96,0,123:15:12,3	0/1:130,0,147:9:5,4	0/1:75,0,227:13:23,3	0/0:0,45,123:15:15,0	0/0:0,37,236:7:7,0
+chrY	92361	.	G	A	2355.46	.	DP=2320	GT:PL:DP:AD	0/1:57,0,123:13:14,2	0/1:50,0,375:9:7,2	0/1:30,0,175:23:9,1	0/1:27,0,237:14:12,2	0/0:0,5,123:14:13,1	0/1:67,0,123:14:14,3	0/1:232,0,167:23:6,4	0/1:74,0,224:15:14,4	0/0:0,45,123:15:15,0	0/0:0,17,156:6:6,0
+chrY	92367	.	C	T	147.655	.	DP=2313	GT:PL:DP:AD	0/1:37,0,123:13:12,1	0/0:0,27,123:9:9,0	0/1:23,0,207:9:7,1	0/0:4,0,234:14:12,2	0/0:0,45,123:15:15,0	0/1:69,0,179:14:12,2	0/0:0,27,123:9:9,0	0/0:0,33,123:15:14,1	0/0:0,42,123:14:14,0	0/0:0,37,155:7:7,0
+chrY	92369	.	C	T	4.03232	.	DP=2307	GT:PL:DP:AD	0/1:37,0,123:13:12,1	0/0:23,0,236:9:7,1	0/0:0,27,245:9:9,0	0/0:0,42,123:14:14,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/0:0,27,123:9:9,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/1:27,0,97:7:6,1
+chrY	92370	.	G	A	230.647	.	DP=2314	GT:PL:DP:AD	0/0:0,39,123:13:13,0	0/1:22,0,224:9:7,1	0/1:33,0,177:9:7,1	0/0:0,42,123:14:14,0	0/1:24,0,240:15:13,2	0/0:0,30,123:14:13,1	0/0:0,27,123:9:9,0	0/0:0,45,123:15:15,0	0/0:0,42,123:14:14,0	0/1:27,0,96:7:6,1
+chrY	92374	.	G	C	131.207	.	DP=927	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,37,229:7:7,0	0/0:0,17,139:6:6,0	0/0:0,36,123:12:12,0	0/1:74,0,207:15:12,3	0/0:1,0,201:12:14,1	0/0:0,27,123:9:9,0	0/1:37,0,199:13:12,1	0/0:0,36,123:12:12,0	0/0:0,37,155:7:7,0
+chrY	92375	.	C	T	192.705	.	DP=925	GT:PL:DP:AD	0/1:27,0,376:14:23,1	0/0:1,0,190:7:6,1	0/1:19,0,232:6:5,1	0/0:0,22,237:14:23,1	0/0:0,36,123:16:15,1	0/1:75,0,146:12:23,2	0/0:0,27,123:9:9,0	0/0:0,27,123:13:12,1	0/0:0,36,123:12:12,0	0/0:0,37,155:7:7,0
+chrY	92376	.	G	A	207.142	.	DP=915	GT:PL:DP:AD	0/0:0,33,123:14:14,0	0/0:0,37,229:7:7,0	0/1:19,0,232:6:5,1	0/0:0,33,247:14:14,0	0/0:0,47,123:16:16,0	0/1:33,0,177:12:23,2	0/0:0,27,377:9:9,0	0/0:0,39,247:13:13,0	0/1:24,0,123:12:14,1	0/0:0,37,155:7:7,0
+chrY	92401	.	G	A	126.672	.	DP=747	GT:PL:DP:AD	0/1:30,0,159:23:9,1	0/0:0,37,227:7:7,0	0/0:0,15,95:5:5,0	0/1:12,0,161:14:23,1	0/0:0,45,123:15:15,0	0/0:0,24,372:7:7,0	0/0:0,27,204:9:9,0	0/1:17,0,172:14:13,1	0/1:37,0,123:13:12,1	0/0:0,37,142:7:7,0
+chrY	92403	.	C	T	134.247	.	DP=737	GT:PL:DP:AD	0/0:7,0,171:23:9,1	0/0:0,37,227:7:7,0	0/0:0,17,97:6:6,0	0/0:0,25,200:12:14,1	0/0:0,23,123:15:14,1	0/1:77,0,77:7:6,2	0/0:0,27,204:9:9,0	0/0:0,33,244:15:14,1	0/0:0,39,123:13:13,0	0/0:0,7,232:7:5,2
+chrY	937746	.	G	C	176.495	.	DP=674	GT:PL:DP:AD	0/0:0,17,220:6:6,0	0/0:0,37,251:7:7,0	0/0:0,37,123:7:7,0	0/0:0,27,247:9:9,0	0/0:0,5,123:14:13,1	0/0:0,30,123:23:23,0	0/0:0,24,123:7:7,0	0/0:0,24,123:7:7,0	0/0:0,37,231:7:7,0	0/0:0,17,247:6:6,0
+chrY	937766	.	T	G	62.6315	.	DP=677	GT:PL:DP:AD	0/0:0,15,223:5:5,0	0/0:0,0,179:7:6,1	0/0:0,24,123:7:7,0	0/0:0,27,123:9:9,0	0/0:0,0,123:9:7,1	0/0:0,39,123:13:13,0	0/1:24,0,123:12:14,1	0/0:0,24,123:7:7,0	0/0:0,17,223:6:6,0	0/0:0,17,247:6:6,0
diff --git a/tests/test_pheno.csv b/tests/test_pheno.csv
new file mode 100644
index 0000000..c34c6ab
--- /dev/null
+++ b/tests/test_pheno.csv
@@ -0,0 +1,6 @@
+#name,poolSizes,Trait_A,Trait_B,traitA_percs,traitA_min,traitA_sig
+G1,20,0.1,83.2,0.2,0.0,0.01
+G2,20,0.3,75.3,0.4,0.0,0.01
+G3,20,0.5,49.8,0.6,0.0,0.01
+G4,20,0.7,23.9,0.8,0.0,0.01
+G5,20,0.9,12.0,1.0,0.0,0.01

From 31984fb0a6e37e1d3c7ceae2be36ea3afb9bc58c Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Fri, 16 Feb 2024 12:39:58 +0000
Subject: [PATCH 07/12] picking the n_reps closest pools using n_reps most
 correlated loci to perform optimisation on instead of random pools + skipping
 te locus of all pools at the locus are all missing + updating README.md

---
 README.md            | 18 +++++++++++
 res/perf.R           |  1 +
 res/perf.md          |  8 ++---
 res/perf_functions.R |  8 ++---
 src/aldknni.rs       | 73 ++++++++++++++++++++++++--------------------
 src/main.rs          |  2 +-
 6 files changed, 66 insertions(+), 44 deletions(-)

diff --git a/README.md b/README.md
index b024199..2857286 100644
--- a/README.md
+++ b/README.md
@@ -8,11 +8,29 @@ Impute allele frequencies to reduce sparsity of genotype data from polyploids, p
 
 ## Installation
 
+### Compile from source
+
+1. From this repo
+
+
+2. Download the repository and load the development environment
+
+```shell
+git clone https://jeffersonfparil:<API_KEY>@github.com/jeffersonfparil/imputef.git main
+cd imputef/
+conda env create --file res/rustenv.yml
+conda activate rustenv
+```
+
 ```shell
 cargo build --release
 target/release/imputef -h
 ```
 
+### Pre-compiled binaries
+
+
+
 ## Usage
 
 
diff --git a/res/perf.R b/res/perf.R
index 69b1e02..2429030 100644
--- a/res/perf.R
+++ b/res/perf.R
@@ -2,6 +2,7 @@
 args = commandArgs(trailingOnly=TRUE)
 # args = c("1", "/group/pasture/Jeff/imputef", "/group/pasture/Jeff/imputef/misc", "3", "32")
 # args = c("1", "/home/jeff/imputef", "/home/jeff/imputef/res", "3", "32")
+# args = c("1", "/data-weedomics-3/imputef", "/data-weedomics-3/imputef/res", "3", "32")
 i = as.numeric(args[1])
 dir_src = args[2]
 dir_data = args[3]
diff --git a/res/perf.md b/res/perf.md
index 2a48a26..82a6fda 100644
--- a/res/perf.md
+++ b/res/perf.md
@@ -25,7 +25,7 @@
 - 5 datasets (**Note**: Place these data into `imputef/misc`)
     + autotetraploid *Medicago sativa* (2n=4x=32; 2.74 Gb genome; 155 samples x 124,151 biallelic loci; in-house source)
     + pools of diploid *Glycine max* (2n=2x=20; 1.15 Gb genome; 478 pools (each pool comprised of 42 individuals) x 39,636 biallelic loci; source: [http://gong_lab.hzau.edu.cn/Plant_imputeDB/#!/download_soybean](http://gong_lab.hzau.edu.cn/Plant_imputeDB/#!/download_soybean))
-    + diploid *Vitis vinifera* (2n=2x=38; 0.5 Gb genome; 77 samples x 8,506 biallelic loci; source: [https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/g3journal/5/11/10.1534_g3.115.021667/5/021667_files1.zip?Expires=1706750617&Signature=yMBQeDumKhnNHIhhUdwsdac~D81t~5RfRi39Bqs4fA8sdE27FVMiyYI7xL8OvLupTqXUim2qC5mgvd5eqby4WCWxCw8x25xnkd6~05gC6puXpHloQSbesTQGrTFios7JeCnXUf306Z~p2vMi0TRgX8qpNTWiwGwwyn2wYAr1tbWIN4EwTQvN8~BgJF31Tj8xJoCVJm2uTpA7~hhsSidJgxVqL4aO20CvwAI1iDcx1gxvienNDS1rYTOruLhwXDif4RGFv8tAb2W5SK3qt4bjgpD6mP8gghv7BWGf0g-arYQywL1fmLCia35qJr7Umxc3LM8iPvWabo5K0sTlRH1oHw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA](https://oup.silverchair-cdn.com/oup/backfile/Content_public/Journal/g3journal/5/11/10.1534_g3.115.021667/5/021667_files1.zip?Expires=1706750617&Signature=yMBQeDumKhnNHIhhUdwsdac~D81t~5RfRi39Bqs4fA8sdE27FVMiyYI7xL8OvLupTqXUim2qC5mgvd5eqby4WCWxCw8x25xnkd6~05gC6puXpHloQSbesTQGrTFios7JeCnXUf306Z~p2vMi0TRgX8qpNTWiwGwwyn2wYAr1tbWIN4EwTQvN8~BgJF31Tj8xJoCVJm2uTpA7~hhsSidJgxVqL4aO20CvwAI1iDcx1gxvienNDS1rYTOruLhwXDif4RGFv8tAb2W5SK3qt4bjgpD6mP8gghv7BWGf0g-arYQywL1fmLCia35qJr7Umxc3LM8iPvWabo5K0sTlRH1oHw__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA))
+    + diploid *Vitis vinifera* (2n=2x=38; 0.5 Gb genome; 77 samples x 8,506 biallelic loci; source: [021667_FileS1 - zip file](https://academic.oup.com/g3journal/article/5/11/2383/6025349#supplementary-data))
 
 - **Genome partitioning:**
     + **By chromosomes or scaffolds**
@@ -53,7 +53,7 @@ rm soybean_impute_Chr* soybean-vcf.txt soybean-indi_temp.vcf
 time Rscript \
     ssv2vcf.R \
     LinkImpute.data.grape.num.raw.txt \
-    zucchini.vcf
+    soybean.vcf
 mv LinkImpute.data.grape.num.raw.txt.vcf grape.vcf
 ```
 
@@ -122,8 +122,8 @@ print(paste0("Output: ", out_fname))
 
 ```R
 args = commandArgs(trailingOnly = TRUE)
-# args = c("/group/pasture/Jeff/imputef/misc/LinkImpute.data.apple.num.raw.txt", "/group/pasture/Jeff/imputef/misc/zucchini.vcf")
-# args = c("/group/pasture/Jeff/imputef/misc/LinkImpute.data.grape.num.raw.txt", "/group/pasture/Jeff/imputef/misc/zucchini.vcf")
+# args = c("/group/pasture/Jeff/imputef/misc/LinkImpute.data.apple.num.raw.txt", "/group/pasture/Jeff/imputef/misc/soybean.vcf")
+# args = c("/group/pasture/Jeff/imputef/misc/LinkImpute.data.grape.num.raw.txt", "/group/pasture/Jeff/imputef/misc/soybean.vcf")
 fname_geno_txt = args[1] 
 fname_geno_dummy_vcf = args[2]
 dat = read.table(fname_geno_txt, header=TRUE, sep=" ")
diff --git a/res/perf_functions.R b/res/perf_functions.R
index 1bac851..5ed2104 100644
--- a/res/perf_functions.R
+++ b/res/perf_functions.R
@@ -330,13 +330,9 @@ fn_test_imputation = function(vcf, mat_genotypes, mat_idx_high_conf_data, ploidy
     ### (3) Adaptive LD-kNN imputation using optimised min_loci_corr and max_pool_dist (where min_l_loci=20 and min_k_neighbours=5)
     time_ini = Sys.time()
     if (restrict_linked_loci_per_chromosome) {
-        tmp_fname_out_aldknni_optim = system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome --n-threads=", n_threads, " --min-loci-corr='-1.0' --max-pool-dist='-1.0'"), intern=TRUE)
-        print(tmp_fname_out_aldknni_optim)
-        fname_out_aldknni_optim = tail(tmp_fname_out_aldknni_optim, n=1)
+        fname_out_aldknni_optim = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --restrict-linked-loci-per-chromosome --n-threads=", n_threads, " --min-loci-corr='-1.0' --max-pool-dist='-1.0'"), intern=TRUE), n=1)
     } else {
-        tmp_fname_out_aldknni_optim = system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --min-loci-corr='-1.0' --max-pool-dist='-1.0'"), intern=TRUE)
-        print(tmp_fname_out_aldknni_optim)
-        fname_out_aldknni_optim = tail(tmp_fname_out_aldknni_optim, n=1)
+        fname_out_aldknni_optim = tail(system(paste0(dir_src, "/target/release/imputef -f ", list_sim_missing$fname_vcf, " --fname-out-prefix='AOPTIM-maf", maf, "-missing_rate", missing_rate, "-", rand_number_id, "' --min-loci-corr='-1.0' --max-pool-dist='-1.0'"), intern=TRUE), n=1)
     }
     duration_aldknni_optim = difftime(Sys.time(), time_ini, units="mins")
     ### LinkImpute's LD-kNN imputation algorithm for unordered genotype data (forcing all data to be diploids)
diff --git a/src/aldknni.rs b/src/aldknni.rs
index 8dfc977..8775711 100644
--- a/src/aldknni.rs
+++ b/src/aldknni.rs
@@ -1,5 +1,5 @@
 use ndarray::{prelude::*, Zip};
-use rand::{prelude::IteratorRandom, Rng};
+use rand::Rng;
 use std::cmp::Ordering;
 use std::fs::{remove_file, OpenOptions};
 use std::io;
@@ -280,29 +280,36 @@ impl GenotypesAndPhenotypes {
         Zip::indexed(&mut allele_frequencies)
         .and(&mut mae_u8)
         .par_for_each(|(i, j_local), q, mu8| {
-            if q.is_nan() {
-                // Define global locus index
-                let j = j_local + idx_ini;
+            // Define global locus index
+            let j = j_local + idx_ini;
+            // Define the allele frequencies at the current allele/locus
+            let vec_q: ArrayView1<f64> = self.intercept_and_allele_frequencies.column(j);
+            let n_non_missing = vec_q.fold(0, |t, &x| if !x.is_nan() {t+1}else{t});
+            let n_reps = if *n_reps <= n_non_missing {
+                *n_reps
+            } else {
+                n_non_missing
+            };
+            if q.is_nan() && (n_reps > 0) {
                 // Define the current chromosome
                 let current_chromosome = self.chromosome[j].to_owned();
-                // Define the allele frequencies at the current allele/locus
-                let vec_q: ArrayView1<f64> = self.intercept_and_allele_frequencies.column(j);
-                let n_non_missing = vec_q.fold(0, |t, &x| if !x.is_nan() {t+1}else{t});
-                let n_reps = if *n_reps <= n_non_missing {
-                    *n_reps
-                } else {
-                    n_non_missing
-                };
-                // Select randomly non-missing pools to impute and estimate imputation error from
-                let mut rng: rand::rngs::ThreadRng = rand::thread_rng();
-                let idx_random_pools: Vec<usize> = (0..vec_q.len()).filter(|&idx| !vec_q[idx].is_nan()).choose_multiple(&mut rng, n_reps);
-
-                // // Select the n_reps most correlated non-missing pools to impute and estimate imputation error from
-                // let distances_all_loci = calculate_genetic_distances_between_pools(
-                //     idx_i,
-                //     &linked_loci_idx,
-                //     &self.intercept_and_allele_frequencies)
-
+                // Select the n_reps most correlated non-missing pools to impute and estimate imputation error from using n_reps most linked loci
+                let (linked_loci_idx, _correlations) =
+                        find_l_linked_loci(j, corr, &0.0, &n_reps,
+                            restrict_linked_loci_per_chromosome,
+                            &current_chromosome,
+                            &self.chromosome).expect("Error getting 10 most linked loci to the locus requiring imputation.");
+                let distances_from_all_other_pools = calculate_genetic_distances_between_pools(
+                    &i,
+                    &linked_loci_idx,
+                    &self.intercept_and_allele_frequencies)
+                    .expect("Error getting distances of all the pools using the 10 most linked loci above.");
+                let mut idx_pools: Vec<usize> = (0..distances_from_all_other_pools.len()).collect();
+                idx_pools
+                    .sort_by(|&a, &b| distances_from_all_other_pools[a]
+                        .partial_cmp(&distances_from_all_other_pools[b])
+                        .expect("Error sorting indexes"));
+                let idx_n_reps_nearest_pools: Vec<usize> = idx_pools[0..n_reps].to_vec();
 
                 // Optimum mae, and parameters
                 let mut optimum_mae: f64 = 1.0;
@@ -323,9 +330,9 @@ impl GenotypesAndPhenotypes {
                     for max_pool_dist in vec_max_pool_dist.iter() {
                         // Across reps
                         let mut mae = 0.0;
-                        for idx_i in idx_random_pools.iter() {
+                        for idx_i in idx_n_reps_nearest_pools.iter() {
                             // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
-                            let distances_all_loci = calculate_genetic_distances_between_pools(
+                            let distances_from_all_other_pools = calculate_genetic_distances_between_pools(
                                 idx_i,
                                 &linked_loci_idx,
                                 &self.intercept_and_allele_frequencies)
@@ -333,7 +340,7 @@ impl GenotypesAndPhenotypes {
                             // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
                             let (distances, frequencies) =
                                 find_k_nearest_neighbours(
-                                    &distances_all_loci,
+                                    &distances_from_all_other_pools,
                                     max_pool_dist,
                                     min_k_neighbours,
                                     &j,
@@ -366,9 +373,9 @@ impl GenotypesAndPhenotypes {
                         for max_pool_dist in vec_max_pool_dist.iter().rev() {
                             // Across reps
                             let mut mae = 0.0;
-                            for idx_i in idx_random_pools.iter() {
+                            for idx_i in idx_n_reps_nearest_pools.iter() {
                                 // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
-                                let distances_all_loci = calculate_genetic_distances_between_pools(
+                                let distances_from_all_other_pools = calculate_genetic_distances_between_pools(
                                     idx_i,
                                     &linked_loci_idx,
                                     &self.intercept_and_allele_frequencies)
@@ -376,7 +383,7 @@ impl GenotypesAndPhenotypes {
                                 // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
                                 let (distances, frequencies) =
                                     find_k_nearest_neighbours(
-                                        &distances_all_loci,
+                                        &distances_from_all_other_pools,
                                         max_pool_dist,
                                         min_k_neighbours,
                                         &j,
@@ -418,7 +425,7 @@ impl GenotypesAndPhenotypes {
                         &current_chromosome,
                         &self.chromosome).expect("Error calling find_l_linked_loci() within per_chunk_aldknni() method for GenotypesAndPhenotypes trait.");
                 // Using the linked loci, estimate the pairwise genetic distance between the current pool and the other pools
-                let distances_all_loci = calculate_genetic_distances_between_pools(
+                let distances_from_all_other_pools = calculate_genetic_distances_between_pools(
                     &i,
                     &linked_loci_idx,
                     &self.intercept_and_allele_frequencies)
@@ -426,7 +433,7 @@ impl GenotypesAndPhenotypes {
                 // Find the k-nearest neighbours given the maximum distance and/or minimum k-neighbours (shadowing the distances across all pools with distances across k-nearest neighbours)
                 let (distances, frequencies) =
                     find_k_nearest_neighbours(
-                        &distances_all_loci,
+                        &distances_from_all_other_pools,
                         &optimum_max_pool_dist,
                         min_k_neighbours,
                         &j,
@@ -549,15 +556,15 @@ impl GenotypesAndPhenotypes {
             let thread = std::thread::scope(|_scope| {
                 let (allele_frequencies, sum_mae, n_missing) = self
                     .per_chunk_aldknni(
-                        (&idx_loci_idx_ini, &idx_loci_idx_fin, &loci_idx),
+                        (&idx_loci_idx_ini, &idx_loci_idx_fin, loci_idx),
                         (
                             &vec_min_loci_corr,
                             &vec_max_pool_dist,
                             &min_l_loci,
                             &min_k_neighbours,
-                            &n_reps,
+                            n_reps,
                         ),
-                        (&corr, restrict_linked_loci_per_chromosome),
+                        (corr, restrict_linked_loci_per_chromosome),
                     )
                     .expect("Error executing per_chunk_aldknni() method on self_clone.");
                 // Write-out intermediate file
diff --git a/src/main.rs b/src/main.rs
index 097ebe5..2963d3b 100644
--- a/src/main.rs
+++ b/src/main.rs
@@ -78,7 +78,7 @@ struct Args {
     #[clap(long, action)]
     restrict_linked_loci_per_chromosome: bool,
     /// Number of replications for the optimisation for the minimum loci correlation, and/or maximum genetic distance (minimum value of 1).
-    #[clap(long, default_value_t = 20)]
+    #[clap(long, default_value_t = 10)]
     n_reps: usize,
     /// Number of computing threads or processor cores to use in the computations.
     #[clap(long, default_value_t = 2)]

From 4ea20748a3961d8607a7afed8478f47b525f663a Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Fri, 16 Feb 2024 21:48:46 +0000
Subject: [PATCH 08/12] testing dev branch

---
 .github/workflows/rust.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/rust.yml b/.github/workflows/rust.yml
index 4e6fbef..78613e6 100644
--- a/.github/workflows/rust.yml
+++ b/.github/workflows/rust.yml
@@ -3,6 +3,7 @@ on:
   push:
     branches:
       - main
+      - dev
 jobs:
   compile:
     name: Compile

From 81cf745daef333281876c8850baa464901fc9dd5 Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Sat, 17 Feb 2024 05:49:09 +0000
Subject: [PATCH 09/12] updataing github actions omitting time in cargo test
 for windows compatibility

---
 .github/workflows/rust.yml | 2 +-
 res/perf.R                 | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/rust.yml b/.github/workflows/rust.yml
index 78613e6..1c35092 100644
--- a/.github/workflows/rust.yml
+++ b/.github/workflows/rust.yml
@@ -39,7 +39,7 @@ jobs:
         with:
           rust-version: ${{ matrix.rust }}
       - name: Tests | Rust
-        run: time cargo test
+        run: cargo test
       - name: Build | Compile | Test on test data
         run: | 
           cargo run -- -h
diff --git a/res/perf.R b/res/perf.R
index 2429030..1bcdc7e 100644
--- a/res/perf.R
+++ b/res/perf.R
@@ -2,7 +2,7 @@
 args = commandArgs(trailingOnly=TRUE)
 # args = c("1", "/group/pasture/Jeff/imputef", "/group/pasture/Jeff/imputef/misc", "3", "32")
 # args = c("1", "/home/jeff/imputef", "/home/jeff/imputef/res", "3", "32")
-# args = c("1", "/data-weedomics-3/imputef", "/data-weedomics-3/imputef/res", "3", "32")
+# args = c("1", "/data-weedomics-3/imputef", "/data-weedomics-3/imputef/res", "41", "32")
 i = as.numeric(args[1])
 dir_src = args[2]
 dir_data = args[3]

From d174fbb422903e348e22cfc414856c720ebfbdc7 Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Sat, 17 Feb 2024 07:00:17 +0000
Subject: [PATCH 10/12] updating github actions omitting clean up after all the
 tests

---
 .github/workflows/rust.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/rust.yml b/.github/workflows/rust.yml
index 1c35092..a6d10c8 100644
--- a/.github/workflows/rust.yml
+++ b/.github/workflows/rust.yml
@@ -59,5 +59,3 @@ jobs:
           cargo run -- -f tests/test_2.csv --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
           cargo run -- -f tests/test_2.sync --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
           cargo run -- -f tests/test_2.vcf --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
-
-          rm intermediate_output-* test-* tests/test-* tests/test_2.*-*.*

From 6c16b350dc3ad9a031048ab47a15baf63f0fe099 Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Sat, 17 Feb 2024 07:00:17 +0000
Subject: [PATCH 11/12] running prelim tests

---
 .github/workflows/rust.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/rust.yml b/.github/workflows/rust.yml
index 1c35092..a6d10c8 100644
--- a/.github/workflows/rust.yml
+++ b/.github/workflows/rust.yml
@@ -59,5 +59,3 @@ jobs:
           cargo run -- -f tests/test_2.csv --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
           cargo run -- -f tests/test_2.sync --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
           cargo run -- -f tests/test_2.vcf --min-loci-corr=-1.0 --max-pool-dist=-1.0 --min-l-loci=1 --min-k-neighbours=1
-
-          rm intermediate_output-* test-* tests/test-* tests/test_2.*-*.*

From b479dcd0ad5d334db2bbef8519525973f783c5b3 Mon Sep 17 00:00:00 2001
From: jeffersonfparil <jeffersonparil@gmail.com>
Date: Mon, 19 Feb 2024 13:16:36 +1100
Subject: [PATCH 12/12] preparing first stable release

---
 Cargo.toml                    |     4 +-
 README.md                     |    79 +-
 res/doc_header_for_maths.html |    15 +
 src/aldknni.rs                |    40 +
 src/filter_missing.rs         |    10 +-
 src/geno.rs                   |     9 +-
 src/helpers.rs                |    14 +-
 src/main.rs                   |    33 +-
 src/mvi.rs                    |    39 +-
 tests/test.pileup             | 64370 --------------------------------
 10 files changed, 192 insertions(+), 64421 deletions(-)
 create mode 100644 res/doc_header_for_maths.html
 delete mode 100644 tests/test.pileup

diff --git a/Cargo.toml b/Cargo.toml
index f8ac6c6..c91bf73 100644
--- a/Cargo.toml
+++ b/Cargo.toml
@@ -6,7 +6,9 @@ edition = '2021'
 [dependencies]
 clap = { version="3.2.23", features=["derive"]}
 ndarray = { version = "0.15.6", features = ["rayon"]}
-ndarray-linalg = { version = "0.16.0", features = ["intel-mkl-static"] } # ndarray-linalg = { version = "0.16.0", features = ["openblas"] }
+ndarray-linalg = "0.16"
+# ndarray-linalg = { version = "0.16.0", features = ["intel-mkl-static"] } 
+# ndarray-linalg = { version = "0.16.0", features = ["openblas"] }
 statrs = "0.16.0"
 rand = "0.8.5"
 rayon = "1.7.0"
diff --git a/README.md b/README.md
index 2857286..7cce8d0 100644
--- a/README.md
+++ b/README.md
@@ -10,35 +10,100 @@ Impute allele frequencies to reduce sparsity of genotype data from polyploids, p
 
 ### Compile from source
 
-1. From this repo
+1. Clone the repository
 
+```shell
+git clone https://jeffersonfparil:<API_KEY>@github.com/jeffersonfparil/imputef.git main
+```
 
-2. Download the repository and load the development environment
+2. Load the Rust development environment via Conda (please see [Conda installation instructions](https://conda.io/projects/conda/en/latest/user-guide/install/index.html) if you do not have Conda pre-installed)
 
 ```shell
-git clone https://jeffersonfparil:<API_KEY>@github.com/jeffersonfparil/imputef.git main
 cd imputef/
 conda env create --file res/rustenv.yml
 conda activate rustenv
 ```
 
+3. Compile and optionally create an alias or a symbolic link or add to $PATH
+
 ```shell
 cargo build --release
 target/release/imputef -h
+# Option 1: alias
+echo alias imputef="$(pwd)/target/release/imputef" >> ~/.bashrc
+source ~/.bashrc
+# Option 2: symlink
+sudo ln -s $(pwd)/target/release/imputef /usr/bin/imputef
+# Option 3: add to $PATH (Note that you need to place this in your ~/.bashrc or the appropriate shell initialisation file)
+export PATH=${PATH}:$(pwd)/target/release
+### Check
+type -a imputef
+cd ~; imputef -h; cd -
 ```
 
 ### Pre-compiled binaries
 
+1. Download the appropriate executable binary compatible with your system
 
+- [GNU/Linux (x86 64-bit)](some/link)
+- [macOS Catalina (x86 64-bit)](some/link)
+- [Windows 10 (x86 64-bit)](some/link)
 
-## Usage
+2. Configure and execute
+
+- In GNU/Linux and macOS:
 
+```shell
+unzip imputef.zip
+chmod +x imputef
+./imputef
+```
 
-### Functions
+- In Windows, open command prompt via: *Win + R*, type "cmd" and press enter. Navigate to your download folder and execute, e.g. `imputef-x86_64-windows.exe -h`.
 
-- `mvi`: mean value imputation of allele frequencies
 
-- `aldknni`: adaptive linkage-informed k-nearest neighbour imputation of allele frequencies
+## Usage
+
+### Quickstart
+
+```shell
+imputef -h
+imputef -f tests/test.csv   # allele frequency table as input
+imputef -f tests/test.sync  # synchronised pileup file as input
+imputef -f tests/test.vcf   # variant call format as input without missing data
+imputef -f tests/test_2.vcf   # variant call format as input
+imputef -f tests/test_2.vcf --method mean # use mean value imputation
+imputef -f tests/test_2.vcf --min-loci-corr=0.75 --max-pool-dist=0.25 # use set minimum loci correlation and maximum genetic distance thresholds
+imputef -f tests/test_2.vcf --min-loci-corr=-1 --max-pool-dist=-1 # optimise for minimum loci correlation and maximum genetic distance thresholds per locus
+### Gird search optimisation assuming a common set of optimal parameters across all loci
+### (different from the built-in optimisation which optimises the minimum loci correlation and maximum genetic distance per locus)
+echo 'l,k,corr,dist,mae' > grid_search.csv
+for l in 5 10 15
+do
+    for k in 1 2 3 4 5
+    do
+        for corr in 0.75 0.95 1.00
+        do
+            for dist in 0.0 0.10 0.25
+            do
+                echo "@@@@@@@@@@@@@@@@@@@@@@@@"
+                echo ${l},${k},${corr},${dist}
+                imputef -f tests/test_2.vcf \
+                    --min-l-loci=${l} \
+                    --min-k-neighbours=${k} \
+                    --min-loci-corr=${corr} \
+                    --max-pool-dist=${dist} \
+                    --n-reps=3 > log.tmp
+                fname_out=$(tail -n1 log.tmp | cut -d':' -f2 | tr -d ' ')
+                mae=$(grep "Expected imputation accuracy in terms of mean absolute error:" log.tmp | cut -d':' -f2 | tr -d ' ')
+                echo ${l},${k},${corr},${dist},${mae} >> grid_search.csv
+                rm $fname_out log.tmp
+            done
+        done
+    done
+done
+awk -F',' 'NR == 1 || $5 < min {min = $5; min_line = $0} END {print min_line}' grid_search.csv
+```
 
 ### Input variables
 
diff --git a/res/doc_header_for_maths.html b/res/doc_header_for_maths.html
new file mode 100644
index 0000000..32ac35a
--- /dev/null
+++ b/res/doc_header_for_maths.html
@@ -0,0 +1,15 @@
+<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/katex@0.10.0/dist/katex.min.css" integrity="sha384-9eLZqc9ds8eNjO3TmqPeYcDj8n+Qfa4nuSiGYa6DjLNcv9BtN69ZIulL9+8CqC9Y" crossorigin="anonymous">
+<script src="https://cdn.jsdelivr.net/npm/katex@0.10.0/dist/katex.min.js"                  integrity="sha384-K3vbOmF2BtaVai+Qk37uypf7VrgBubhQreNQe9aGsz9lB63dIFiQVlJbr92dw2Lx" crossorigin="anonymous"></script>
+<script src="https://cdn.jsdelivr.net/npm/katex@0.10.0/dist/contrib/auto-render.min.js"    integrity="sha384-kmZOZB5ObwgQnS/DuDg6TScgOiWWBiVt0plIRkZCmE6rDZGrEOQeHM5PcHi+nyqe" crossorigin="anonymous"></script>
+<script>
+    document.addEventListener("DOMContentLoaded", function() {
+        renderMathInElement(document.body, {
+            delimiters: [
+                {left: "$$", right: "$$", display: true},
+                {left: "\\(", right: "\\)", display: false},
+                {left: "$", right: "$", display: false},
+                {left: "\\[", right: "\\]", display: true}
+            ]
+        });
+    });
+</script>
diff --git a/src/aldknni.rs b/src/aldknni.rs
index 8775711..347048f 100644
--- a/src/aldknni.rs
+++ b/src/aldknni.rs
@@ -605,6 +605,12 @@ impl GenotypesAndPhenotypes {
                 let p = allele_frequencies.ncols();
                 assert_eq!(chromosome.len(), p, "Error, the number of chromosome names and the total number of loci are not equal.");
                 // Instantiate output file
+                println!(
+                    "--> {}: Writing out intermediate file with expected MAE of {}: {}",
+                    i,
+                    sensible_round(sum_mae / n_missing, 4),
+                    &fname_intermediate_file
+                );
                 let error_writing_file =
                     "Unable to create file: ".to_owned() + &fname_intermediate_file;
                 let mut file_out = OpenOptions::new()
@@ -675,6 +681,40 @@ impl GenotypesAndPhenotypes {
     }
 }
 
+/// # `aldknni`: adaptive linkage disequilibrium (LD)-based k-nearest neighbour imputation of genotype data
+///
+/// This is an attempt to extend the [LD-kNNi method of Money et al, 2015, i.e. LinkImpute](https://doi.org/10.1534/g3.115.021667), which was an extension of the [kNN imputation of Troyanskaya et al, 2001](https://doi.org/10.1093/bioinformatics/17.6.520). Similar to LD-kNNi, linkage disequilibrium (LD) is estimated using Pearson's product moment correlation per pair of loci, which is computed per chromosome by default, but can be computed across the entire genome. We use the mean absolute difference/error (MAE) between allele frequencies among linked loci as an estimate of genetic distance between samples. Fixed values for the minimum correlation to identify loci used in distance estimation, and maximum genetic distance to select the k-nearest neighbours can be defined. Additionally, minimum number of loci to include in distance estimation, and minimum number of nearest neighbours can be set. Moreover, all four parameters can be optimised, i.e. the minimum correlation and/or maximum distance and/or minimum number of loci and/or minimum number of nearest neighbours which minimises the MAE between predicted and expected allele frequencies after simulating 10% missing data are identified.
+///
+/// The allele depth information (`AD`), i.e. the unfiltered allele depth which includes the reads which did not pass the variant caller filters are used to calculate allele frequencies. If the `GT` field is present but the `AD` field is absent, then each sample is assumed to be an individual diploid, i.e., neither a polyploid nor a pool. Optional filtering steps based on minimum depth, minimum allele frequency, and maximum sparsity are available. Genotype data are not imported into R, LD estimation and imputation per se are multi-threaded, and imputation output is written into disk as an [allele frequency table](#allele-frequency-table-csv). The structs, traits, methods, and functions defined in this library are subsets of [poolgen](https://github.com/jeffersonfparil/poolgen), and will eventually be merged.
+///
+/// The imputed allele frequency is computed as:
+///
+/// $$
+/// \hat q_{r,j} = { \sum_{i \ne r}^{k} q_{i,j} (1 - \delta_{i,r}) }
+/// $$
+///
+/// with:
+///
+/// $$
+/// \delta_{i,r} = { {1 \over \sum d_{i,r}} d_{i,r} }
+/// $$
+///
+/// and
+///
+/// $$
+/// d_{i,r} = { {1 \over c} { \sum_{j=1}^{c} |q_{i,j} - q_{r,j}| } }
+/// $$
+///
+/// where:
+///
+/// - $\hat q_{r,j}$ is the imputed allele frequency of sample $r$ at the $j^{\text {th}}$ locus,
+/// - $n$ is the total number of samples,
+/// - $m$ is the number of samples which are missing data at the $j^{\text {th}}$ locus,
+/// - $q_{i,j}$ is the known allele frequency of the $i^{\text {th}}$ sample at the $j^{\text {th}}$ locus,
+/// - $k$ is the number of nearest neighbours or the samples most closely related to the sample requiring imputation, i.e. sample $r$ at locus $j$, and
+/// - $\delta_{i,r}$ is scaled $d_{i,r}$ which is the genetic distance between the $i^{\text {th}}$ sample and sample $r$. This distance is the mean absolute difference in allele frequencies between the two samples across $c$ linked loci.
+///
+/// The variables $k$ and $c$ are proportional to the user inputs `max_pool_dist` (default=0.1) and `min_loci_corr` (default=0.9), respectively. The former defines the maximum distance of samples to be considered as one of the k-nearest neighbours, while the latter refers to the minimum correlation with the locus requiring imputation to be included in the estimation of the genetic distance.
 pub fn impute_aldknni(
     genotypes_and_phenotypes: GenotypesAndPhenotypes,
     filter_stats: &FilterStats,
diff --git a/src/filter_missing.rs b/src/filter_missing.rs
index deda6f4..df20d73 100644
--- a/src/filter_missing.rs
+++ b/src/filter_missing.rs
@@ -43,9 +43,13 @@ impl GenotypesAndPhenotypes {
 
     pub fn missing_rate(&mut self) -> io::Result<f64> {
         let (n, l) = self.coverages.dim();
-        let sum = self
-            .coverages
-            .fold(0, |sum, &x| if x.is_nan() { sum + 1 } else { sum });
+        let sum = self.coverages.fold(0, |sum, &x| {
+            if (x.is_nan()) || (x == 0.0) {
+                sum + 1
+            } else {
+                sum
+            }
+        });
         Ok(sensible_round(sum as f64 * 100.0 / ((n * l) as f64), 5))
     }
 
diff --git a/src/geno.rs b/src/geno.rs
index 6666ec5..93a8002 100644
--- a/src/geno.rs
+++ b/src/geno.rs
@@ -259,13 +259,16 @@ impl LoadAll for FileGeno {
         loci_chr.push(chromosome.last().expect("Error push chromosome within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.").to_owned());
         loci_pos.push(position.last().expect("Error push position within the convert_into_genotypes_and_phenotypes() method for FileGeno struct.").to_owned());
         // Add alternative alleles if the allele frequencies per locus do not add up to 1.00 (~or if only one allele per locus is present~)
-        // Count how many allele we have to add
+        // Create coverages matrix setting missing loci to f64::NAN, while counting how many allele we have to add
+        let mut coverages: Array2<f64> = Array2::from_elem((n, l), 1_000.0);
         for j in 0..l {
             let idx_ini = loci_idx[j];
             let idx_fin = loci_idx[j + 1];
-            let _n_alleles = idx_fin - idx_ini;
             let mut freq_sum_less_than_one = false;
             for i in 0..n {
+                if mat[(i, idx_ini)].is_nan() {
+                    coverages[(i, j)] = f64::NAN;
+                }
                 if mat.slice(s![i, idx_ini..idx_fin]).sum() < 1.0 {
                     freq_sum_less_than_one = true;
                     break;
@@ -323,7 +326,7 @@ impl LoadAll for FileGeno {
             intercept_and_allele_frequencies: mat_new,
             phenotypes: Array2::from_shape_vec((n, 1), vec![f64::NAN; n]).expect("Error generating dummy phenotype data within the convert_into_genotypes_and_phenotypes() method for FileGeno struct."),
             pool_names,
-            coverages: Array2::from_elem((n, l), 1_000.0),
+            coverages,
         })
     }
 }
diff --git a/src/helpers.rs b/src/helpers.rs
index 1bf8c99..29c2245 100644
--- a/src/helpers.rs
+++ b/src/helpers.rs
@@ -186,17 +186,17 @@ mod tests {
     fn test_helpers() {
         if cfg!(windows) {
             assert_eq!(
-                find_start_of_next_line(&"./tests/test.pileup".to_owned(), 56),
-                58
-            ); // line 1 has a total of 57 characters in windows and only 56 in unix, so the next line should start at the 58th character position
+                find_start_of_next_line(&"./tests/test.sync".to_owned(), 77),
+                79
+            ); // line 1 has a total of 78 characters in windows and only 77 in unix, so the next line should start at the 79th character position
         } else {
             assert_eq!(
-                find_start_of_next_line(&"./tests/test.pileup".to_owned(), 56),
-                57
-            ); // 56th character is the newline character as line 1 has a total of 56 characters, so the next line should start at the 57th character position
+                find_start_of_next_line(&"./tests/test.sync".to_owned(), 77),
+                78
+            ); // 77th character is the newline character as line 1 has a total of 77 characters, so the next line should start at the 78th character position
         }
         assert_eq!(
-            find_file_splits(&"./tests/test.pileup".to_owned(), &2)
+            find_file_splits(&"./tests/test.sync".to_owned(), &2)
                 .unwrap()
                 .len(),
             3
diff --git a/src/main.rs b/src/main.rs
index 2963d3b..fedde56 100644
--- a/src/main.rs
+++ b/src/main.rs
@@ -21,7 +21,7 @@ use crate::vcf::*;
 #[derive(Parser, Debug)]
 #[clap(
     author = "Jeff Paril",
-    version = "0.1.0",
+    version = "1.0.0",
     about = "Impute allele frequencies to reduce sparsity of genotype data from polyploids, pooled individuals, and populations.",
     long_about = "Imputation of genotype data from sequencing of more than 2 sets of genomes, i.e. polyploid individuals, population samples, or pools of individuals. This library can also perform simple genotype data filtering prior to imputation. Two imputation methods are available: (1) mean value imputation which uses the arithmentic mean of the locus across non-missing pools; (2) adaptive linkage-informed k-nearest neighbour imputation. This is an attempt to extend the [LD-kNNi method of Money et al, 2015, i.e. LinkImpute](https://doi.org/10.1534/g3.115.021667), which was an extension of the [kNN imputation of Troyanskaya et al, 2001](https://doi.org/10.1093/bioinformatics/17.6.520). Similar to LD-kNNi, LD is estimated using Pearson's product moment correlation across loci per pair of samples. Mean absolute difference in allele frequencies is used to define genetic distance between samples, instead of taxicab or Manhattan distance in LD-kNNi. Four parameters can be set by the user, (1) minimum loci correlation threshold: dictates the minimum LD between the locus requiring imputation and other loci which will be used to estimate genetic distance between samples; (2) maximum genetic distance threshold: sets the maximum genetic distance between the sample requiring imputation and the samples (i.e. nearest neighbours) to be used in weighted mean imputation of missing allele frequencies; (3) minimum number of loci linked to the locus requiring imputation: overrides minimum loci correlation threshold if this minimum is not met; and (4) minimum k-nearest neighbours: overrides maximum genetic distance threshold if this minimum is not met. The first two parameters (minimum loci correlation and maximum genetic distance thresholds) can be optimised per locus requiring imputation using non-missing samples as replicates simulating missing data to minimum the mean absolute error in imputation."
 )]
@@ -74,10 +74,10 @@ struct Args {
     /// This argument overrides `max_pool_dist`, i.e. the minimum number of k-nearest neighbours will be met regardless of the maximum genetic distance threshold.
     #[clap(long, default_value_t = 5)]
     min_k_neighbours: usize,
-    /// Restrict the choice of linked loci to within the chromosome the locus requiring imputation belongs to?
+    /// Restrict the choice of linked loci to within the chromosome the locus requiring imputation belongs to? [default: false]
     #[clap(long, action)]
     restrict_linked_loci_per_chromosome: bool,
-    /// Number of replications for the optimisation for the minimum loci correlation, and/or maximum genetic distance (minimum value of 1).
+    /// Number of replications for the estimation of imputation accuracy in terms of mean absolute error (MAE), and for the optimisation for minimum loci correlation, and/or maximum genetic distance (minimum value of 1).
     #[clap(long, default_value_t = 10)]
     n_reps: usize,
     /// Number of computing threads or processor cores to use in the computations.
@@ -89,6 +89,7 @@ struct Args {
 }
 
 /// # imputef: Impute allele frequencies to reduce sparsity of genotype data from polyploids, pooled individuals, and populations.
+/// Imputation of genotype data from sequencing of more than 2 sets of genomes, i.e. polyploid individuals, population samples, or pools of individuals. This library can also perform simple genotype data filtering prior to imputation. Two imputation methods are available: (1) mean value imputation which uses the arithmentic mean of the locus across non-missing pools (`?imputef::mvi`); (2) adaptive linkage-informed k-nearest neighbour imputation (`?imputef::aldknni`). This is an attempt to extend the [LD-kNNi method of Money et al, 2015, i.e. LinkImpute](https://doi.org/10.1534/g3.115.021667), which was an extension of the [kNN imputation of Troyanskaya et al, 2001](https://doi.org/10.1093/bioinformatics/17.6.520). Similar to LD-kNNi, LD is estimated using Pearson's product moment correlation across loci per pair of samples. Mean absolute difference in allele frequencies is used to define genetic distance between samples, instead of taxicab or Manhattan distance in LD-kNNi. Four parameters can be set by the user, (1) minimum loci correlation threshold: dictates the minimum LD between the locus requiring imputation and other loci which will be used to estimate genetic distance between samples; (2) maximum genetic distance threshold: sets the maximum genetic distance between the sample requiring imputation and the samples (i.e. nearest neighbours) to be used in weighted mean imputation of missing allele frequencies; (3) minimum number of loci linked to the locus requiring imputation: overrides minimum loci correlation threshold if this minimum is not met; and (4) minimum k-nearest neighbours: overrides maximum genetic distance threshold if this minimum is not met. The first two parameters (minimum loci correlation and maximum genetic distance thresholds) can be optimised per locus requiring imputation using non-missing samples as replicates simulating missing data to minimum the mean absolute error in imputation.
 fn main() {
     let args = Args::parse();
     // Identify the format of the input file
@@ -273,7 +274,31 @@ fn main() {
         )
         .expect("Error performing adaptive LD-kNN imputation via impute_aldknni() within impute().")
     };
-    println!("{}", fname_out);
+    println!(
+        "Imputation output in allele frequency table format: {}",
+        fname_out
+    );
 }
 
+// # Running tests
+// cargo fmt
+// cargo fix --allow-dirty
+// cargo clippy
+// time cargo test
+// rm intermediate_output-* test-* tests/test-* tests/test.*-*.* tests/test_2.*-*.* tests/test_2.*-*.*
+// # Compilation and building docs (for x86_64-unknown-linux-gnu)
+// cargo build --release
+// RUSTDOCFLAGS="--html-in-header res/doc_header_for_maths.html" cargo doc --no-deps --document-private-items ### open: $(pwd)/target/doc/imputef/index.html
+// # Compilation on Windows (for x86_64-pc-windows-gnu)
+// Install git and rustup on Windows
+// git clone https://github.com/jeffersonfparil/imputef.git
+// cd imputef
+// cargo build --release
+// Compile on macOS
+// Install Docker Desktop on Windows and activate WSL2 backend
+// Open WSL2 and install: sudo apt -y install bridge-utils cpu-checker libvirt-clients libvirt-daemon qemu qemu-kvm
+// docker pull sickcodes/docker-osx:latest
+// Open Docker Desktop, find the downloaded docker image and run
+// git clone https://github.com/jeffersonfparil/imputef.git
+// cd imputef
 // cargo build --release
diff --git a/src/mvi.rs b/src/mvi.rs
index aa9ae50..42df852 100644
--- a/src/mvi.rs
+++ b/src/mvi.rs
@@ -224,7 +224,19 @@ impl GenotypesAndPhenotypes {
     }
 }
 
-// Impute using mean allele frequencies across pools
+/// # `mvi`: mean value imputation
+///
+/// This imputation uses the arithmetic mean of the observed allele frequencies across all samples where the locus was genotyped:
+///
+/// $$
+/// \hat q_{r,j} = { {1 \over (n-m)} { \sum_{i \ne r}^{n} q_{i,j} } }
+/// $$
+///
+/// where:
+/// - $\hat q_{r,j}$ is the imputed allele frequency of sample $r$ at the $j^{\text {th}}$ locus,
+/// - $n$ is the total number of samples,
+/// - $m$ is the number of samples which are missing data at the $j^{\text {th}}$ locus, and
+/// - $q_{i,j}$ is the known allele frequency of the $i^{\text {th}}$ sample at the $j^{\text {th}}$ locus.
 pub fn impute_mean(
     mut genotypes_and_phenotypes: GenotypesAndPhenotypes,
     filter_stats: &FilterStats,
@@ -380,28 +392,3 @@ mod tests {
         // assert_eq!(0, 1);
     }
 }
-
-// SYNC=/home/jeff/poolgen/tests/test_REMOVE_ME_BEFORE_PUSHING.sync
-// PHEN=/home/jeff/poolgen/tests/test_REMOVE_ME_BEFORE_PUSHING.csv
-// NCORES=7
-// OUT=/home/jeff/poolgen/tests/test-MEAN_IMPUTE-REMOVE_ME_BEFORE_PUSHING.csv
-// time cargo run -- impute \
-//     --imputation-method "mean" \
-//     -f ${SYNC} \
-//     -p ${PHEN} \
-//     --phen-delim , \
-//     --phen-name-col 0 \
-//     --phen-pool-size-col 1 \
-//     --phen-value-col 2 \
-//     --min-allele-frequency 0.0001 \
-//     --min-coverage 0 \
-//     --min-quality 0.01 \
-//     --max-missingness-rate 0.75 \
-//     --min-depth-set-to-missing 5 \
-//     --window-size-bp 1000000 \
-//     --window-slide-size-bp 1000000 \
-//     --min-loci-per-window 1 \
-//     --min-correlation 0.5 \
-//     --k-neighbours 5 \
-//     --n-threads ${NCORES} \
-//     -o ${OUT}
diff --git a/tests/test.pileup b/tests/test.pileup
deleted file mode 100644
index a4e593b..0000000
--- a/tests/test.pileup
+++ /dev/null
@@ -1,64370 +0,0 @@
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-Chromosome1	32680256	A	2	,-1g,	JA	0	*	*	1	,-1g	F	0	*	*	2	,-1g,	JJ
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-Chromosome1	38847989	A	2	g,	JJ	0	*	*	2	g,	J<	1	t	J	0	*	*
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-Chromosome1	38932118	G	2	a,	JJ	0	*	*	0	*	*	1	.	j	4	,.a,	JsJA
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-Chromosome1	38932218	T	2	,g	JJ	0	*	*	0	*	*	1	.	o	3	,g,	FJ<
-Chromosome1	38933928	C	1	t	F	3	t,,	JJJ	2	,,	JJ	0	*	*	2	,t	JJ
-Chromosome1	39041700	C	0	*	*	1	.-2AA	s	1	.-1A	s	0	*	*	1	.-1A	j
-Chromosome1	39045387	A	1	c	J	2	,c	JJ	0	*	*	0	*	*	1	,	J
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-Chromosome1	83607484	C	2	,a	JJ	0	*	*	3	a,,	JJJ	0	*	*	1	,	J
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-Chromosome1	84174583	C	0	*	*	1	A	k	1	,	<	2	t,	JJ	0	*	*
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-Chromosome1	85669446	T	0	*	*	3	ccc	JJF	5	.cccc	jJJJJ	3	.cc	sJJ	5	.,cc.	`J<Jo
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-Chromosome1	135207632	T	612	.,........G.....................................................................................................................................................................................................................................................................................................................G.......................................................................................................G.........G.................................................................................................................................................................................	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-Chromosome1	135207633	C	688	.,..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	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-Chromosome1	135207635	T	633	.,......................................................................................................................................................................................................................................................................................................................................................................................................................G................................................................................................................................................................................................................................	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-Chromosome1	135207651	T	509	,................................G......................G..................G..........G...............................................G............G.................................................................................................................................G.....................................................................G..G..............................................................................................................................................................	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-Chromosome1	135207662	C	704	.,.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................,....	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-Chromosome1	135207666	C	685	.,.........................................................................................................................................................................................................................................................................................................................................................................................T................T................................................................................................................................................................................................................................................................................................	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-Chromosome1	135207668	A	585	.,......................................................................................................................G.....................................................................................................................................................................................................C.....................................................................................................................................................................................................................................................................,....	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-Chromosome1	135207670	A	575	.,.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	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-Chromosome1	135207671	T	599	.,................................................................................G......................................................................................................................................................................................................................................C.............................................................................................................................................................................................................................................................................................	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-Chromosome1	193396808	G	139	...............................................................T.........................C.................................................	JJJJJJAJJJJJJJJJJJJJJJ<JJJJ<JJJJJJJJJJJJJ77JJJJAJJJFJJJJJJJJFAJJJJFJJJJJJJJFJJJFJJ<F7JJFJJAJJJJJJJJJJJJJ<JJJFFFJJFJJJJJJJ<JFJF<JAJJJJJJJ7JJ	46	..............................................	AFJFJAJJJFJ7AJJJFFFJJJJJJ7JJAJ<JJJJJFJJFJJJJJ<	122	.............................................................T............................................................	FJFJJJJJJJJJJFFJFJJJF<JJJFJFJJJJJJF7JJJJJJJJJJJJA<JJJJJ7AFJJJJJJFJJJJJJ<J<JFJJJJJ7JFJJJJFJJJ7J7JJJJJJJJJJJJJJ7<<JJJFJJJJFJ	77	..........................................T..................................	JJJF7JJJJAJJJJFJFJJJFJJJAJJJJJJAFJJJJFJJAJFJJ<JJJ<J<JJJJJJJJJJJJJJJJJJJJJJJJJ	139	............................................T............................................................................T................^9.	JJJJJJJJJJFJJJFJF<JJJJJFJJJFJJFF<<JJJJFFJJJJJFAFJJJJJFJJFJJJFFJFJJJJJAJJJJAJJJJJJJJJAFJJFJJJJJJJJJJJJJJJFJJFJJAJJJJJ<JFJ7JJJJJJJJJJJFJJFFJA
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-Chromosome1	289173003	A	3	g,,	JFA	1	g	J	0	*	*	0	*	*	1	.$	`
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-Chromosome1	289331918	C	3	..T	JJJ	2	T.	FJ	2	..	JJ	0	*	*	0	*	*
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-Chromosome1	289605979	T	2	,a	JJ	1	,	J	0	*	*	2	a,	JA	0	*	*
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-Chromosome2	6694433	C	4	,,,,	AJJJ	1	t	J	0	*	*	0	*	*	2	,t	JJ
-Chromosome2	6694435	C	4	,,,,	FJJF	1	t	J	0	*	*	0	*	*	2	,t	FJ
-Chromosome2	6822130	T	9	,c,,,,,,,	7FFJJJFJ7	5	,,,,,	AJJJ7	5	c,,cc	JJJFJ	0	*	*	5	,,,c,	JJFJF
-Chromosome2	6866419	A	0	*	*	2	TT	JJ	1	.	F	0	*	*	2	T.	JF
-Chromosome2	6866446	G	0	*	*	2	CC	ss	1	.	s	0	*	*	2	C.	Rs
-Chromosome2	6866449	G	0	*	*	2	TT	sk	1	.	s	0	*	*	2	T.	Vs
-Chromosome2	6866458	A	0	*	*	2	CC	ss	1	.	s	0	*	*	2	C.	Ws
-Chromosome2	6866524	C	0	*	*	2	TT	ss	1	.	s	0	*	*	2	T.	js
-Chromosome2	6866539	G	0	*	*	2	,,	JJ	1	C	s	0	*	*	2	C,	s<
-Chromosome2	6866571	G	0	*	*	2	aa	JJ	1	,	J	0	*	*	2	a,	JJ
-Chromosome2	6912306	G	1	.	A	0	*	*	0	*	*	3	..A	sJJ	1	A	J
-Chromosome2	6912310	C	1	.	J	0	*	*	0	*	*	3	.TT	sJJ	1	T	J
-Chromosome2	6912312	G	1	.	F	0	*	*	0	*	*	3	..C	sJJ	1	C	J
-Chromosome2	6912402	A	0	*	*	0	*	*	1	,	J	3	.GG	sFF	1	G	G
-Chromosome2	6912413	G	0	*	*	0	*	*	1	,	J	3	..A	sAF	1	A	J
-Chromosome2	6912425	C	0	*	*	0	*	*	1	,	J	3	..G	s7F	1	G	\
-Chromosome2	7034916	C	2	.,	s<	1	a	J	0	*	*	0	*	*	2	,t	JJ
-Chromosome2	7086245	G	0	*	*	0	*	*	1	.	J	1	A	J	2	A.	J7
-Chromosome2	7105498	T	0	*	*	3	..A	JJ7	0	*	*	2	AA	JJ	1	.	J
-Chromosome2	7105638	C	0	*	*	3	gg,	JJA	0	*	*	2	,,	JJ	1	g	<
-Chromosome2	7105674	A	0	*	*	3	gg,	JJA	0	*	*	2	,,	JJ	1	g	A
-Chromosome2	7238662	G	0	*	*	3	.T.	FoJ	1	A	<	0	*	*	1	.	J
-Chromosome2	7296442	A	0	*	*	0	*	*	1	,	F	1	.-1G	J	1	.-1G	J
-Chromosome2	7468821	A	1	G	J	0	*	*	0	*	*	2	G.	Js	1	.	J
-Chromosome2	7588286	G	2	C.	JJ	1	C	F	0	*	*	1	,	J	0	*	*
-Chromosome2	7644679	A	1	T	s	1	C	s	1	.	s	0	*	*	2	T.	Ce
-Chromosome2	7663081	T	0	*	*	2	.,	JF	2	c,	JJ	1	c	J	0	*	*
-Chromosome2	7663082	A	0	*	*	2	.,	JF	2	t,	JJ	1	t	J	0	*	*
-Chromosome2	7702328	C	0	*	*	3	A.A	JsJ	0	*	*	1	.	J	1	A	J
-Chromosome2	7702376	A	0	*	*	3	G.G	`os	0	*	*	1	.	s	1	G	o
-Chromosome2	7702382	A	0	*	*	3	G.G	sss	0	*	*	1	.	s	1	G	s
-Chromosome2	7702427	A	0	*	*	3	G.G	jss	0	*	*	1	.	s	1	G	s
-Chromosome2	7702442	A	0	*	*	3	,gg	JJJ	0	*	*	1	,	J	1	g	J
-Chromosome2	7702447	A	0	*	*	3	,gg	JJJ	0	*	*	1	,	J	1	g	J
-Chromosome2	7702449	T	0	*	*	3	,cc	JJJ	0	*	*	1	,	J	1	c	J
-Chromosome2	7703233	T	1	.	J	0	*	*	2	.C	oJ	0	*	*	1	C	F
-Chromosome2	7703243	G	1	.	<	0	*	*	2	.A	sJ	0	*	*	1	A	F
-Chromosome2	7703271	A	1	.	J	0	*	*	2	.T	jJ	0	*	*	1	T	J
-Chromosome2	7703291	T	1	.	J	0	*	*	2	.C	RF	0	*	*	1	C	J
-Chromosome2	7703298	A	1	.	F	0	*	*	2	.G	oF	0	*	*	1	G	F
-Chromosome2	7717944	G	0	*	*	1	,-1t	A	0	*	*	2	,,-1t	J7	3	.-1T,-1t,-1t	MJF
-Chromosome2	7750995	C	0	*	*	1	a	J	2	,a	JJ	1	,	J	0	*	*
-Chromosome2	7761038	A	1	,-1g	J	0	*	*	1	,-1g	J	1	,	F	0	*	*
-Chromosome2	7853787	C	0	*	*	1	,-8acagtata	J	1	,-8acagtata	J	0	*	*	1	,	F
-Chromosome2	7857334	T	1	.-4CATG	U	0	*	*	1	.-4CATG	U	0	*	*	1	,	J
-Chromosome2	8110343	T	1	G	A	2	G,	As	0	*	*	0	*	*	1	.	s
-Chromosome2	8435957	C	2	.A	JJ	3	AA.	JJJ	7	.....A.	J<JJJJ7	3	...	JJJ	6	.G...G	JJJJJJ
-Chromosome2	8469693	T	0	*	*	1	.-7AACCCTA	9	1	.	e	3	.-1A..	\HA	0	*	*
-Chromosome2	8469724	A	0	*	*	1	.	J	1	,-6aaccct	@	3	,-6aaccct,,	<FJ	0	*	*
-Chromosome2	8547203	T	2	G.	JF	0	*	*	1	G	J	0	*	*	1	.	J
-Chromosome2	8577563	G	4	,,,a	JJJJ	0	*	*	0	*	*	1	,	J	1	t	J
-Chromosome2	8602704	T	0	*	*	1	.	A	0	*	*	2	c.	Js	1	C	o
-Chromosome2	8653681	A	0	*	*	0	*	*	1	.	s	1	.-1T	s	1	,-1t	J
-Chromosome2	8893077	C	0	*	*	1	T	W	2	..	s`	2	T.	Vs	2	.T	ss
-Chromosome2	8928865	A	1	G	A	1	.	<	0	*	*	0	*	*	2	.G	JJ
-Chromosome2	8928937	T	1	.	7	1	C	J	0	*	*	0	*	*	2	.C	JF
-Chromosome2	8980112	C	0	*	*	2	at	FA	1	,	J	0	*	*	1	t	J
-Chromosome2	8980129	G	0	*	*	2	,,	JA	2	a,	FJ	0	*	*	1	a	F
-Chromosome2	9015074	C	0	*	*	0	*	*	2	.T	JJ	1	T	J	2	TG	JJ
-Chromosome2	9015081	C	0	*	*	0	*	*	2	.-1A.	FJ	1	.-1A	J	1	.-1A	J
-Chromosome2	9140783	C	1	,	J	1	t	J	0	*	*	0	*	*	2	,t	JJ
-Chromosome2	9175316	C	3	.AA	F::	1	.	F	0	*	*	0	*	*	1	A	:
-Chromosome2	9302554	T	6	.C.CC.	<F<FJJ	3	CCC	7FJ	2	.C	7J	2	.C	AJ	2	C.	JF
-Chromosome2	9320622	C	2	A.	JJ	0	*	*	2	A.	JJ	0	*	*	1	A	J
-Chromosome2	9320678	C	2	.-1G.	ss	0	*	*	1	.-1G	F	0	*	*	1	.-1G	s
-Chromosome2	9320769	G	2	,a	JJ	0	*	*	2	c,	7J	0	*	*	1	,	J
-Chromosome2	9354618	A	0	*	*	0	*	*	2	G.	sk	1	.	`	1	G	s
-Chromosome2	9354633	A	0	*	*	0	*	*	2	G.	fs	1	.	e	1	G	s
-Chromosome2	9354658	A	0	*	*	0	*	*	2	.g	oJ	1	.	o	1	G	`
-Chromosome2	9354671	G	0	*	*	0	*	*	2	,a	JJ	1	,	J	1	a	J
-Chromosome2	9399828	G	1	.	J	0	*	*	0	*	*	2	.T	FJ	1	T	J
-Chromosome2	9399845	C	1	.	J	0	*	*	0	*	*	2	.G	sJ	1	G	J
-Chromosome2	9399847	T	1	.	J	0	*	*	0	*	*	2	.G	sJ	1	G	J
-Chromosome2	9399859	C	1	.	J	0	*	*	0	*	*	2	.G	`J	1	G	J
-Chromosome2	9399860	G	1	.	J	0	*	*	0	*	*	2	.A	sJ	1	A	J
-Chromosome2	9399868	G	1	.	J	0	*	*	0	*	*	2	.C	sJ	1	C	J
-Chromosome2	9399879	A	1	.	J	0	*	*	0	*	*	2	.G	`J	1	G	J
-Chromosome2	9399883	T	1	.	J	0	*	*	0	*	*	2	.C	\J	1	C	J
-Chromosome2	9399923	T	1	.	J	0	*	*	0	*	*	2	.C	VJ	1	C	J
-Chromosome2	9399925	G	1	.	J	0	*	*	0	*	*	2	.A	sJ	1	A	F
-Chromosome2	9399938	A	1	.	J	0	*	*	0	*	*	2	.G	oJ	1	G	A
-Chromosome2	9399959	C	1	.	J	0	*	*	0	*	*	2	.T	eJ	1	T	A
-Chromosome2	9458208	C	1	g	J	0	*	*	2	,g	JJ	0	*	*	1	,	A
-Chromosome2	9458345	C	1	t	F	0	*	*	2	,t	JH	0	*	*	2	,,	JJ
-Chromosome2	9534990	A	0	*	*	1	,$	A	2	,-1t,-1t	JJ	2	,-1t,-1t	FJ	0	*	*
-Chromosome2	9631371	A	1	C	J	1	G	F	0	*	*	2	C,	Jf	0	*	*
-Chromosome2	9701983	A	2	,,	JA	0	*	*	0	*	*	1	g	F	2	,g	J7
-Chromosome2	9812626	G	1	.-1A	J	1	.	J	0	*	*	0	*	*	1	.-1A	J
-Chromosome2	9870816	T	1	,	A	1	a	J	0	*	*	3	a,a	JJJ	4	a,aa	JAJJ
-Chromosome2	9903437	G	0	*	*	0	*	*	1	.	J	2	.T	JJ	1	T	F
-Chromosome2	9903467	T	0	*	*	0	*	*	1	.	J	2	.C	FJ	1	C	J
-Chromosome2	9903661	T	0	*	*	0	*	*	1	,	J	2	c,	JJ	1	c	J
-Chromosome2	9903694	G	0	*	*	0	*	*	1	,	J	2	c,+6atactc	FA	1	c	J
-Chromosome2	9951217	C	1	.-4ATAA	J	0	*	*	1	.-4ATAA	J	1	,	s	0	*	*
-Chromosome2	9968732	T	0	*	*	2	GG	ss	2	.G	kJ	2	G.	JJ	0	*	*
-Chromosome2	9968775	G	0	*	*	2	AA	ss	1	,	J	2	.a	sJ	0	*	*
-Chromosome2	9968795	G	0	*	*	2	CC	ss	1	,	J	2	.c	sJ	0	*	*
-Chromosome2	9968796	C	0	*	*	2	TT	ss	1	,	J	2	.t	sJ	0	*	*
-Chromosome2	9968808	T	0	*	*	2	..	ss	1	g	J	2	G,	sJ	0	*	*
-Chromosome2	10089696	G	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,	F
-Chromosome2	10410432	C	1	.-2AA	J	1	.-2AA	J	0	*	*	1	.-2AA	J	0	*	*
-Chromosome2	10410777	T	1	,	J	1	,-1a	J	0	*	*	1	,-1a	F	0	*	*
-Chromosome2	10467029	G	3	A,,	JJJ	1	,	J	0	*	*	0	*	*	1	A	J
-Chromosome2	10503339	G	0	*	*	1	A	o	0	*	*	2	..	ss	2	.A	ss
-Chromosome2	10503360	C	0	*	*	1	T	s	0	*	*	2	..	os	2	.T	ss
-Chromosome2	10503403	A	0	*	*	1	G	s	0	*	*	2	..	sj	2	.G	so
-Chromosome2	10503410	G	0	*	*	1	A	s	0	*	*	2	..	oj	2	.A	ss
-Chromosome2	10503431	C	0	*	*	1	t	J	0	*	*	2	,,	JJ	2	,t	JJ
-Chromosome2	10503444	G	0	*	*	1	,	J	0	*	*	2	a,	JJ	2	a,	JJ
-Chromosome2	10629881	T	0	*	*	0	*	*	1	.-1A	J	2	.-1A.-1A	AJ	1	.-1A	J
-Chromosome2	10665763	C	0	*	*	1	,	J	2	g,	JJ	0	*	*	1	g	J
-Chromosome2	11175052	T	1	c	F	2	c,	FJ	0	*	*	3	,c,	JJJ	2	,,	7J
-Chromosome2	11201615	G	2	.A	JA	0	*	*	0	*	*	1	.	J	1	A	J
-Chromosome2	11202408	G	1	A	J	0	*	*	0	*	*	2	..	Fs	2	.A	7J
-Chromosome2	11202684	C	1	t	J	0	*	*	0	*	*	1	,	A	2	t,	<J
-Chromosome2	11202705	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	F<
-Chromosome2	11202711	G	1	a	J	0	*	*	0	*	*	1	,	A	2	a,	FJ
-Chromosome2	11202726	A	1	g	J	0	*	*	0	*	*	1	,	<	2	g,	JF
-Chromosome2	11202732	G	1	a	J	0	*	*	0	*	*	1	,	J	2	a,	JJ
-Chromosome2	11202750	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	JJ
-Chromosome2	11202752	G	1	a	J	0	*	*	0	*	*	1	,	7	2	a,	AJ
-Chromosome2	11217961	C	1	,	J	1	T	s	2	T,	aJ	0	*	*	0	*	*
-Chromosome2	11217977	T	1	,	6	1	G	s	2	G,	fH	0	*	*	0	*	*
-Chromosome2	11356770	T	1	c	A	1	.	s	0	*	*	0	*	*	2	,c	JF
-Chromosome2	11356793	A	1	c	F	1	.	s	0	*	*	0	*	*	2	,c	JJ
-Chromosome2	11356794	G	1	c	J	1	.	s	0	*	*	0	*	*	2	,c	JF
-Chromosome2	11356821	T	1	c	J	1	.	s	0	*	*	0	*	*	2	,c	JJ
-Chromosome2	11356825	G	1	a	J	1	.	s	0	*	*	0	*	*	2	,a	JJ
-Chromosome2	11385042	A	0	*	*	2	ct	7J	2	tc	JF	0	*	*	2	tc	FF
-Chromosome2	11385147	A	0	*	*	2	,,	JJ	2	g,	JJ	0	*	*	2	g,	JJ
-Chromosome2	11405787	C	0	*	*	2	t,	JJ	1	,	J	2	,t	JJ	0	*	*
-Chromosome2	11409191	G	0	*	*	2	T.	JJ	2	T.	FJ	1	A	J	1	T	J
-Chromosome2	11409344	G	0	*	*	2	at	<J	2	a,	JJ	1	,	J	1	a	J
-Chromosome2	11606040	G	17	..............A..	JJJJJJJJJJAJJJJJJ	11	.....A.....	JFFFJJJJFJJ	17	.....A...........	JJJA<JJJJJJJFJJJJ	3	...	JJJ	11	......A.A..	JJJJJJJA<JJ
-Chromosome2	11834959	C	2	G.	JJ	2	GG	JJ	0	*	*	2	.G	JF	0	*	*
-Chromosome2	11834973	G	1	.-4ACGT	7	2	.-4ACGT.-4ACGT	::	0	*	*	2	..-4ACGT	J:	0	*	*
-Chromosome2	11835031	A	2	G.	JJ	2	GG	JJ	0	*	*	2	.G	JF	0	*	*
-Chromosome2	11835041	G	2	A.	JJ	1	A	J	0	*	*	1	.	J	0	*	*
-Chromosome2	12014080	A	2	c,	AJ	0	*	*	1	,	F	0	*	*	1	c	J
-Chromosome2	12077427	C	0	*	*	1	,	J	2	a,	JJ	0	*	*	1	t	J
-Chromosome2	12083384	A	0	*	*	0	*	*	1	^I.	8	2	G.	JJ	1	G	J
-Chromosome2	12083965	A	1	G	J	0	*	*	0	*	*	1	.	J	2	G.	JJ
-Chromosome2	12083977	T	1	C	J	0	*	*	0	*	*	1	.	J	2	C.	FJ
-Chromosome2	12112193	G	2	.A	<J	1	A	J	1	.	J	0	*	*	0	*	*
-Chromosome2	12112209	G	2	.A	FJ	1	.	J	1	A	J	0	*	*	0	*	*
-Chromosome2	12112501	T	2	,c	JJ	1	c	J	1	,	J	0	*	*	0	*	*
-Chromosome2	12159712	T	1	.-1C	J	0	*	*	1	.	J	0	*	*	1	.-1C	J
-Chromosome2	12323192	G	0	*	*	1	T	J	2	..	JJ	0	*	*	2	T.	JJ
-Chromosome2	12323196	G	0	*	*	1	.	J	2	A.	JJ	0	*	*	2	.A	JJ
-Chromosome2	12323270	C	0	*	*	1	.	s	2	G.	js	0	*	*	2	.G	se
-Chromosome2	12323313	C	0	*	*	1	.	s	2	T.	fs	0	*	*	2	.T	sj
-Chromosome2	12323335	C	0	*	*	1	,	J	2	tt	FJ	0	*	*	2	,t	JJ
-Chromosome2	12838841	C	0	*	*	1	.	J	1	.-1A	J	1	.-1A	J	0	*	*
-Chromosome2	12871162	G	0	*	*	1	.	J	1	T	J	2	.T	AJ	0	*	*
-Chromosome2	12871174	C	0	*	*	1	.	J	1	T	J	2	.T	JJ	0	*	*
-Chromosome2	12871194	G	0	*	*	1	.	J	1	A	J	2	.A	JJ	0	*	*
-Chromosome2	12871216	G	0	*	*	1	T	F	1	A	J	2	TA	JJ	0	*	*
-Chromosome2	12872168	C	0	*	*	0	*	*	1	.-6GCACAG	9	1	.	J	2	..-6GCACAG	J9
-Chromosome2	12872186	G	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	J<
-Chromosome2	12872402	C	0	*	*	0	*	*	1	t	J	1	,	J	2	t,	AF
-Chromosome2	12872403	T	0	*	*	0	*	*	1	c	J	1	,	J	2	c,	J<
-Chromosome2	12872431	C	0	*	*	0	*	*	1	g	J	1	,	F	2	g,	JA
-Chromosome2	12872435	A	0	*	*	0	*	*	1	t	F	1	,	<	2	t,	J<
-Chromosome2	12872436	T	0	*	*	0	*	*	1	a	J	1	,	<	2	a,	FA
-Chromosome2	12872447	A	0	*	*	0	*	*	1	g	J	1	,	<	2	g,	FF
-Chromosome2	12872475	T	0	*	*	0	*	*	1	,-9gcatacgcg	8	1	,	F	2	,-9gcatacgcg,	8F
-Chromosome2	12877695	A	1	,	7	2	,g	F7	0	*	*	0	*	*	1	t	J
-Chromosome2	12896292	C	0	*	*	0	*	*	3	.GG	JJJ	1	G	7	1	.	J
-Chromosome2	12896330	G	0	*	*	0	*	*	3	C..	jJs	1	.	F	1	C	F
-Chromosome2	12896355	G	0	*	*	0	*	*	3	.-4TGGT..	Oos	1	.	k	1	.-4TGGT	8
-Chromosome2	12896404	A	0	*	*	0	*	*	3	..g	ssJ	1	.	f	1	G$	J
-Chromosome2	12896417	G	0	*	*	0	*	*	3	CC,	JJJ	1	C	K	1	,	J
-Chromosome2	12896431	C	0	*	*	0	*	*	3	,tt	JJJ	1	t	J	1	,	J
-Chromosome2	12902590	G	0	*	*	2	.C	J<	2	CC	FJ	0	*	*	1	.	J
-Chromosome2	12919106	T	0	*	*	1	.-1C	E	2	..-1C	FE	0	*	*	1	.	F
-Chromosome2	12919107	C	0	*	*	1	*	A	2	T*	FA	0	*	*	1	.	F
-Chromosome2	12929725	T	1	c	J	1	.	F	0	*	*	2	.C	JJ	0	*	*
-Chromosome2	12936907	G	0	*	*	1	.	s	2	c.	Js	0	*	*	1	c	J
-Chromosome2	12936926	T	0	*	*	1	C	s	2	,C	Jo	0	*	*	1	,	J
-Chromosome2	13090699	T	0	*	*	1	,-4aaag	J	0	*	*	1	,-4aaag	A	1	,	J
-Chromosome2	13162011	C	0	*	*	5	.....	JJJJF	14	.........T....	JJJJJJJJJJJJJJ	10	......T...	JJJJJJJJJJ	14	...T.....T....	JJJJJJAJJJJJJJ
-Chromosome2	13162088	G	0	*	*	5	.....	sssss	15	A...........A.,	@sosssjcssjsoss	14	...A........A.	ojsVssssjsssRs	15	....A..........	sssssssssseosss
-Chromosome2	13162094	T	0	*	*	5	.....	oVaso	15	.....G........,	MsooksRkososssj	14	.......G......	o`sHee`sesosWo	15	.G........G....	osoos``ejs`sVso
-Chromosome2	13162101	G	0	*	*	5	.....	sooss	15	.....T........,	osss=sfjssesoso	14	.......T......	sksjsssoksjses	15	.T........T....	sssssojssoaoojs
-Chromosome2	13347462	T	1	G	J	2	G.	JJ	1	.	F	0	*	*	0	*	*
-Chromosome2	13566780	G	2	C.	JJ	0	*	*	3	..C	J<7	1	C	<	2	..	JJ
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-Chromosome2	13590258	T	6	AA.G.A	JJJJJJ	3	..A	AJJ	0	*	*	1	G	J	6	.A....	JJJJJF
-Chromosome2	13590344	A	6	..GGG.	JJJFJJ	3	GG.	J<J	0	*	*	1	G	J	6	G.GGG.	JFJJJJ
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-Chromosome2	13683388	C	0	*	*	2	T,	sJ	1	t	J	3	,t.	AJs	1	,	J
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-Chromosome2	13723170	C	0	*	*	0	*	*	2	..	JF	2	.T	FJ	4	TT..	JFJJ
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-Chromosome2	13723324	G	0	*	*	0	*	*	2	,,	JJ	3	,,A	JJs	3	,,a	JJF
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-Chromosome2	13795127	A	2	..	FF	0	*	*	1	G	s	0	*	*	2	.G	JJ
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-Chromosome2	36680433	A	1	.-20TATATACTTCCGTACGGTAG	9	1	.-20TATATACTTCCGTACGGTAG	9	0	*	*	0	*	*	1	.-20TATATACTTCCGTACGGTAG	:
-Chromosome2	36686504	C	1	t	J	0	*	*	0	*	*	3	..t	se7	1	,	J
-Chromosome2	36764101	T	0	*	*	1	.	s	5	.C.C.	Josss	2	C.	ss	0	*	*
-Chromosome2	36764127	C	0	*	*	1	,	J	4	T,,t	sJJJ	2	t,	7J	0	*	*
-Chromosome2	36882933	A	0	*	*	1	,	<	3	c,,	A<A	0	*	*	3	,c,	JJF
-Chromosome2	36984614	G	1	,	J	1	.-1T	s	1	.-2TT	F	1	.-2TT	`	1	,-1t	e
-Chromosome2	37125102	A	1	G	J	0	*	*	2	.G	JJ	1	.	J	0	*	*
-Chromosome2	37151425	C	0	*	*	0	*	*	1	,-1t	J	1	,	J	1	,-1t	J
-Chromosome2	37257493	G	3	,,,	JJJ	0	*	*	1	,-1t	J	1	,-1t	J	0	*	*
-Chromosome2	37537449	G	0	*	*	1	A	o	2	A.	ss	0	*	*	1	.	s
-Chromosome2	37656405	G	1	T	J	0	*	*	1	.	J	2	T.	FJ	2	aT	`J
-Chromosome2	37656428	A	1	.	J	0	*	*	1	G	J	2	.G	JJ	2	g.	`J
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-Chromosome2	37656522	G	1	a	F	0	*	*	1	.	o	2	.a	oJ	0	*	*
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-Chromosome2	37932438	C	0	*	*	1	.	o	4	..TT	ssVs	0	*	*	2	.T	ss
-Chromosome2	37932560	G	0	*	*	1	,	J	4	,t,,	JJJJ	0	*	*	2	,a	JJ
-Chromosome2	37974916	G	0	*	*	1	.	s	1	A	o	0	*	*	2	A.+3TGA	o5
-Chromosome2	38002990	T	0	*	*	1	.+2AC	J	0	*	*	2	.+2AC.+2AC	JH	2	.+2AC.+2AC	JJ
-Chromosome2	38375059	T	2	,,-1c	JF	1	,-1c	J	1	,-1c	J	0	*	*	1	,	J
-Chromosome2	38434734	A	1	,	J	1	g	J	4	g,gg	<JJJ	0	*	*	2	,t	JJ
-Chromosome2	38446558	T	2	C.	JA	1	.	J	0	*	*	0	*	*	2	.C	AJ
-Chromosome2	38446571	T	2	.-2TC.-2TC	88	1	.-2TC	8	2	.-2TC.-2TC	88	0	*	*	2	..-2TC	J7
-Chromosome2	38446587	C	1	.-1T	J	1	.-1T	J	2	.-1T.-1T	<J	0	*	*	1	.-1T	?
-Chromosome2	38555674	G	2	A.	J<	0	*	*	0	*	*	1	A	A	1	.	J
-Chromosome2	38618406	G	0	*	*	0	*	*	1	T	`	3	,,,	JJF	3	T,,	sFJ
-Chromosome2	38618427	A	0	*	*	0	*	*	1	,	J	3	ttt	JJF	3	,tt	J<F
-Chromosome2	38618437	G	0	*	*	0	*	*	1	,	J	3	ccc	JJJ	3	,cc	JFJ
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-Chromosome2	38831802	T	1	C	J	0	*	*	1	.	<	0	*	*	4	C..C	JJJJ
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-Chromosome2	55801046	A	0	*	*	0	*	*	1	.	J	2	.C	AJ	2	.C	JJ
-Chromosome2	55801067	C	0	*	*	0	*	*	1	.	s	2	.A	oJ	2	..-2TA	sa
-Chromosome2	55801072	C	0	*	*	0	*	*	1	.	s	2	.T	sJ	1	T	s
-Chromosome2	55801076	T	0	*	*	0	*	*	1	.	s	2	.C	s]	2	.C	se
-Chromosome2	55801135	A	0	*	*	0	*	*	1	.	s	2	.G	os	2	.G	ss
-Chromosome2	55881879	C	2	,t	JJ	0	*	*	1	t	J	0	*	*	2	,,	FJ
-Chromosome2	55881883	A	2	,t	JJ	0	*	*	1	t	J	0	*	*	1	,	J
-Chromosome2	56008596	T	2	CA	<J	3	CAC	FJJ	0	*	*	0	*	*	1	C	J
-Chromosome2	56008621	A	2	.G	sA	2	.G	sJ	0	*	*	1	.	a	2	.g	<J
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-Chromosome2	56010525	C	0	*	*	3	a,,	JJJ	1	t	J	0	*	*	1	,	J
-Chromosome2	56013038	G	1	.	\	0	*	*	0	*	*	3	,Aa	JoF	1	a	7
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-Chromosome2	56013048	A	1	G	f	0	*	*	0	*	*	2	,T	Js	1	t	J
-Chromosome2	56014054	C	0	*	*	0	*	*	1	.	J	2	t,	JJ	1	t	A
-Chromosome2	56014113	G	0	*	*	0	*	*	1	.-1A	J	1	,-1a	<	1	,	J
-Chromosome2	56014174	C	1	a	J	0	*	*	0	*	*	2	a,	JA	2	,a	JJ
-Chromosome2	56014727	C	1	.	J	2	.T	Js	0	*	*	3	TT.	JJJ	1	T	J
-Chromosome2	56014732	A	1	.	J	2	.G	Js	0	*	*	3	GG.	JJJ	1	G	J
-Chromosome2	56014735	C	1	.	F	2	.T	Js	0	*	*	3	TT.	JJJ	1	T	F
-Chromosome2	56014747	G	1	.	J	2	.T	Js	0	*	*	3	TT.	JJJ	1	T	J
-Chromosome2	56014759	T	1	.	J	2	.C	Js	0	*	*	3	CC.	JJJ	1	C	F
-Chromosome2	56014775	T	1	.	J	2	.A	Js	0	*	*	3	AA.	JJA	1	A	J
-Chromosome2	56014788	C	1	.	J	2	.G	Js	0	*	*	3	GG.	JJ<	1	G	J
-Chromosome2	56014790	C	1	.	F	2	.T	Js	0	*	*	2	T.	JJ	1	T	J
-Chromosome2	56014794	A	1	.	F	2	.G	Fs	0	*	*	3	GG.	JJA	1	G	J
-Chromosome2	56014821	A	1	.	J	2	.G	Js	0	*	*	3	GG.	JsF	1	G	J
-Chromosome2	56015017	C	0	*	*	2	,A	JJ	1	A	J	2	.,	FJ	0	*	*
-Chromosome2	56015038	T	0	*	*	2	,G	Js	1	G	s	1	.	j	0	*	*
-Chromosome2	56027747	C	1	.-1T	J	1	.+1T	>	1	,-1t	J	0	*	*	0	*	*
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-Chromosome2	56193843	C	1	,-8tccgaact	7	1	,-8tccgaact	7	1	,-8tccgaact	7	0	*	*	0	*	*
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-Chromosome2	56388686	T	0	*	*	1	,	J	0	*	*	2	c,	JF	2	,c	JJ
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-Chromosome2	56424797	C	1	a	J	0	*	*	0	*	*	3	a,,	7JJ	1	.	s
-Chromosome2	56514340	C	6	..TT.T	FJJJJJ	6	.....T	JJJJJF	10	.T.TT.....	JJJ<JJJJJJ	7	.T.....	JJJJJJJ	9	TTTT.....	JFJJJJJFJ
-Chromosome2	56514364	C	6	...G.G	JJFJJJ	6	...GG.	JJJJF7	10	..........	JJJJJJJJJJ	7	.....T.	JJJJJFJ	9	GG.......	JJFJJJJ<J
-Chromosome2	56690544	C	1	.	J	1	.-3CGG	<	0	*	*	0	*	*	1	,-3cgg	:
-Chromosome2	56826836	A	0	*	*	1	,-4gcat	;	0	*	*	1	,-4gcat	;	1	,-4gcat	;
-Chromosome2	56936052	C	3	..T	JJ7	0	*	*	1	,	o	0	*	*	1	T	7
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-Chromosome2	56936073	T	3	..C	JJJ	0	*	*	1	,	j	0	*	*	1	C	J
-Chromosome2	56936145	G	3	..A	FJJ	0	*	*	1	,	e	0	*	*	1	A	D
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-Chromosome2	57039351	C	2	,t	AA	2	,t	JJ	2	tt	JJ	1	.	s	2	t,	JJ
-Chromosome2	57131491	G	2	,t	JJ	1	t	J	3	,,a	FJJ	3	,,a	JJJ	1	,	F
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-Chromosome2	57301771	C	3	..A	sFJ	0	*	*	0	*	*	1	A	J	1	.	J
-Chromosome2	57301947	T	2	C.	JJ	0	*	*	0	*	*	1	c	J	1	.	J
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-Chromosome2	120182389	C	1	T	s	2	..	ks	0	*	*	2	T.	ss	0	*	*
-Chromosome2	120182422	C	1	A	o	2	..	js	0	*	*	2	A.	ss	0	*	*
-Chromosome2	120182453	C	1	t	J	2	,,	JF	0	*	*	2	t,	JJ	0	*	*
-Chromosome2	120215239	T	0	*	*	0	*	*	2	.C	FJ	1	.	F	1	C	J
-Chromosome2	120215508	G	0	*	*	0	*	*	2	,t	FJ	1	,	F	1	t	J
-Chromosome2	120215512	T	0	*	*	0	*	*	2	,a	JF	1	,	J	1	a	A
-Chromosome2	120437910	T	1	.	s	1	.-1G	s	0	*	*	1	,-1g	`	0	*	*
-Chromosome2	120441471	C	0	*	*	2	T.	so	0	*	*	1	.	s	3	.T.	sss
-Chromosome2	120441490	C	0	*	*	2	..	ss	0	*	*	1	A	s	3	A..	sos
-Chromosome2	120471646	C	2	,t	JJ	0	*	*	2	tt	FA	0	*	*	1	,	7
-Chromosome2	120614194	G	1	c	J	0	*	*	0	*	*	3	CC,	ssF	1	,	J
-Chromosome2	120681202	T	0	*	*	4	.,-4aggg,-4aggg,	OGG5	0	*	*	2	,,-4aggg	JA	2	,-4aggg,-4aggg	FG
-Chromosome2	120681203	A	1	*	F	4	.**g	`GG5	0	*	*	3	,**	JG@	3	,**	JGG
-Chromosome2	120681204	G	1	*	F	4	.**,	jGG5	0	*	*	3	,**	AG@	3	,**	JGG
-Chromosome2	120681205	G	1	*	F	4	.**,	oGG5	0	*	*	3	,**	FG@	3	,**	JGG
-Chromosome2	120681206	G	1	*	F	4	.**,	sGG5	0	*	*	3	,**	JG@	3	,**	JGG
-Chromosome2	120723600	G	1	.-1C	J	0	*	*	0	*	*	1	.-1C	J	1	.	J
-Chromosome2	120798224	C	3	,,,	JJJ	4	..,t	ssJJ	3	,tt	JJJ	2	t,	JJ	3	,t,	<<J
-Chromosome2	120798275	C	3	,t,	JJJ	4	tt,,	JFJJ	3	,,,	JJJ	2	,t	JJ	2	,t	FJ
-Chromosome2	120804694	T	3	CC.	JJJ	1	C	J	0	*	*	2	..	JJ	0	*	*
-Chromosome2	120804696	T	3	..C	JJJ	1	.	J	0	*	*	2	.C	JJ	0	*	*
-Chromosome2	120804710	A	3	..G	JJJ	1	.	J	0	*	*	3	.G.	sss	0	*	*
-Chromosome2	120804716	C	3	TT.	FJJ	1	T	J	0	*	*	3	...	ses	0	*	*
-Chromosome2	120804722	A	3	CC.	JFJ	1	C	J	0	*	*	3	...	sss	0	*	*
-Chromosome2	120804730	T	2	A.	JJ	1	A	J	0	*	*	3	...	sss	0	*	*
-Chromosome2	120854045	A	3	,gg	JJJ	2	,g	JA	0	*	*	1	g	A	0	*	*
-Chromosome2	121044473	G	1	.	J	0	*	*	2	T.	JF	0	*	*	1	T	9
-Chromosome2	121044859	G	0	*	*	1	a	J	2	,a	JJ	2	A.	so	0	*	*
-Chromosome2	121300837	G	1	.	J	2	AA	JJ	0	*	*	0	*	*	2	.A	JF
-Chromosome2	121300861	G	1	.	J	2	AA	JJ	0	*	*	0	*	*	2	.A	JJ
-Chromosome2	121300884	T	1	.	J	2	CC	JJ	0	*	*	0	*	*	2	.C	JJ
-Chromosome2	121300931	A	1	.	`	2	CC	os	0	*	*	0	*	*	2	.C	sV
-Chromosome2	121300975	A	1	,	A	2	gg	JJ	0	*	*	0	*	*	2	,g	JJ
-Chromosome2	121301041	G	1	,	J	2	aa	JJ	0	*	*	0	*	*	2	,a	JJ
-Chromosome2	121318641	G	0	*	*	2	..	FF	3	..A	JJJ	0	*	*	1	T	J
-Chromosome2	121318711	A	0	*	*	3	...	JeJ	5	.GGG.	FJJFJ	4	...G	JssJ	0	*	*
-Chromosome2	121318938	C	2	t,	JJ	3	*t,	JJJ	5	,,t,,	<JJJJ	3	,,,	JJJ	3	t,,	JJJ
-Chromosome2	121363528	G	0	*	*	0	*	*	2	A.	s\	1	A	s	1	.	s
-Chromosome2	121407164	A	1	.	J	2	.G	Js	0	*	*	0	*	*	1	T	J
-Chromosome2	121407208	C	1	T	J	2	T,	JJ	0	*	*	0	*	*	1	.	A
-Chromosome2	121407235	C	1	T	J	2	T,	J9	0	*	*	0	*	*	1	.	A
-Chromosome2	121460758	T	1	.	J	1	C	J	0	*	*	0	*	*	2	C.	7J
-Chromosome2	121529325	G	0	*	*	4	....	JFJF	0	*	*	1	A	J	3	.-1A..	JJ7
-Chromosome2	121738702	A	0	*	*	1	.-4GTAC	:	1	.-4GTAC	:	1	.	s	0	*	*
-Chromosome2	121738796	C	0	*	*	1	.	s	1	T	j	2	t,	JF	0	*	*
-Chromosome2	121861797	C	1	.	A	0	*	*	3	T..	JJA	0	*	*	2	T.	JJ
-Chromosome2	121862395	C	2	.T	FJ	0	*	*	0	*	*	1	.	A	2	T.	JA
-Chromosome2	121862431	C	3	.TT	<FJ	0	*	*	0	*	*	1	.	J	1	T	A
-Chromosome2	121862447	T	3	.CC	FJA	0	*	*	0	*	*	1	.	<	3	C..	J<J
-Chromosome2	121862518	G	3	..C	7AJ	0	*	*	0	*	*	1	.	F	3	C..	JFs
-Chromosome2	121862690	G	3	,,a	FJJ	0	*	*	0	*	*	1	,	A	2	a,	JF
-Chromosome2	121862714	G	3	t,,	<JJ	0	*	*	0	*	*	1	t	F	2	,,	JJ
-Chromosome2	121862729	G	3	,,t	<FJ	0	*	*	0	*	*	1	,	A	2	t,	JA
-Chromosome2	121863115	T	0	*	*	0	*	*	4	.CCC	JJJJ	1	C	J	3	C.C	FJJ
-Chromosome2	121863124	C	0	*	*	0	*	*	4	....	JJJF	1	T	s	3	..T	<JJ
-Chromosome2	121863186	G	1	.	J	0	*	*	2	.A	JF	1	A	s	2	.A	JJ
-Chromosome2	121863207	C	1	.	J	0	*	*	3	.GG	JJJ	1	G	s	2	.G	JJ
-Chromosome2	121909638	G	0	*	*	2	..	so	2	A.	Js	2	.A	ss	1	A	J
-Chromosome2	121909731	C	0	*	*	2	,t	JJ	1	a	J	1	,	J	0	*	*
-Chromosome2	121909732	C	0	*	*	2	t,	JJ	1	t	J	1	,	J	0	*	*
-Chromosome2	121983829	G	0	*	*	3	..A	FJJ	1	A	J	3	.A.	JGJ	0	*	*
-Chromosome2	121983851	A	0	*	*	3	..C	<JJ	1	C	J	3	.C.	JJJ	0	*	*
-Chromosome2	121983891	C	0	*	*	3	..T	VsJ	1	T	J	3	...	JJJ	0	*	*
-Chromosome2	121983892	T	0	*	*	3	..A	jsJ	1	A	J	3	...	JJJ	0	*	*
-Chromosome2	121983893	G	0	*	*	3	..A	jsJ	1	A	J	3	...	JJJ	0	*	*
-Chromosome2	121983909	G	0	*	*	3	..C	`ss	1	C	o	3	...	JJJ	0	*	*
-Chromosome2	121983940	C	0	*	*	3	...-15CATGATTTTACTGAA	ssS	1	.-15CATGATTTTACTGAA	S	3	...	sss	0	*	*
-Chromosome2	121983988	T	0	*	*	3	,,c	JJJ	1	c	J	3	,,,	JJJ	0	*	*
-Chromosome2	121984021	T	0	*	*	3	gg,	JJJ	1	,	J	3	g,g	JJJ	0	*	*
-Chromosome2	121984033	T	0	*	*	3	,,c	FFJ	1	c	J	3	,,,	JJJ	0	*	*
-Chromosome2	122037206	G	1	T	J	0	*	*	0	*	*	1	.	J	2	A.	JA
-Chromosome2	122037245	A	1	C	J	0	*	*	0	*	*	1	.	<	2	C.	FA
-Chromosome2	122037248	C	1	A	J	0	*	*	0	*	*	1	.	n	2	AT	JQ
-Chromosome2	122037249	G	1	C	J	0	*	*	0	*	*	1	.	s	2	C.	Jg
-Chromosome2	122037254	T	1	C	J	0	*	*	0	*	*	2	.,	sJ	2	C.	Jo
-Chromosome2	122037272	A	1	T	F	0	*	*	0	*	*	2	.,	sF	2	T.-1C	Vi
-Chromosome2	122037275	G	1	A	J	0	*	*	0	*	*	2	.,	jJ	2	A.	so
-Chromosome2	122037296	A	1	G	J	0	*	*	0	*	*	2	.,	oA	2	GT	`o
-Chromosome2	122037341	C	1	,+3caa	7	0	*	*	0	*	*	2	,+3caa,+3caa	::	2	,+3taa,+3caa	I5
-Chromosome2	122037351	A	1	c	J	0	*	*	0	*	*	2	,,	JJ	2	,c	JF
-Chromosome2	122037371	G	1	a	J	0	*	*	0	*	*	2	,,	JJ	2	,a	JJ
-Chromosome2	122037372	T	1	c	J	0	*	*	0	*	*	2	,,	JJ	2	,c	JJ
-Chromosome2	122087353	G	1	.	J	1	C	J	3	C.C	JJJ	0	*	*	0	*	*
-Chromosome2	122087383	A	1	.	J	1	G	J	3	G.G	JJJ	0	*	*	0	*	*
-Chromosome2	122178484	T	2	,c	JJ	2	aa	JJ	3	c,,	JJF	1	c	J	4	,c,,	JJJJ
-Chromosome2	122182924	T	1	C	J	1	.	k	0	*	*	1	.-3GGC	I	0	*	*
-Chromosome2	122183010	C	2	.A	oJ	3	.A.	sJm	1	T	J	2	..	os	0	*	*
-Chromosome2	122413998	C	1	A	7	1	.	7	0	*	*	3	..A	JJF	0	*	*
-Chromosome2	122574009	A	2	t,	JJ	1	,	J	0	*	*	0	*	*	2	.t	eJ
-Chromosome2	122809621	A	1	,	F	0	*	*	2	,g	JJ	1	g	A	0	*	*
-Chromosome2	122929093	A	2	C.	JJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome2	122929180	T	3	C.c	JJJ	1	C	J	0	*	*	0	*	*	1	.	7
-Chromosome2	122929283	G	2	a,	FJ	1	,	J	0	*	*	0	*	*	1	a	J
-Chromosome2	122929336	C	2	t,	JJ	1	t	J	0	*	*	0	*	*	1	,	J
-Chromosome2	122930736	G	4	.AA.	JJJJ	6	.AA.A.	JJFJJJ	8	.....A..	JFJFJJJF	2	..	JJ	6	...A..	JJJJsJ
-Chromosome2	122930886	A	4	,g,,	JFJJ	7	,,,g,,,	JJAJJJA	8	,,,,,g,,	JJJJAJJF	2	,,	FJ	5	,,,g,	JJJFJ
-Chromosome2	122930947	C	4	g,gg	JJJJ	6	gg,ggg	JJJJJF	8	gaggg,gg	FJJJ7JJA	2	gg	JJ	5	gg,,g	JJJJF
-Chromosome2	123034936	A	2	T.	FF	0	*	*	0	*	*	1	.	F	2	TT	JJ
-Chromosome2	123036715	G	2	.A	JF	0	*	*	1	T	J	0	*	*	3	...	FFF
-Chromosome2	123081812	A	0	*	*	2	G.	JJ	1	.	F	0	*	*	3	..G	7JJ
-Chromosome2	123081992	T	0	*	*	2	,g	JF	1	g	F	0	*	*	3	,,,	JJA
-Chromosome2	123082039	G	0	*	*	2	a,	JA	1	,	J	0	*	*	3	,,a	FJJ
-Chromosome2	123085231	A	0	*	*	0	*	*	2	,g	FJ	2	Gg	sF	1	,	F
-Chromosome2	123118294	T	1	,	J	0	*	*	1	,-6tcaata	5	2	,-6tcaata,-6tcaata	55	0	*	*
-Chromosome2	123385867	A	1	,	J	1	,-2gg	J	0	*	*	0	*	*	1	,-2gg	J
-Chromosome2	123650207	C	1	.-1A	J	0	*	*	1	.-1A	J	0	*	*	2	.-1A.-1A	JJ
-Chromosome2	123652643	T	2	.C	JJ	2	C.	JJ	1	.	J	0	*	*	0	*	*
-Chromosome2	123652657	A	2	T.	JJ	2	.T	Js	1	T	J	0	*	*	0	*	*
-Chromosome2	123775208	A	0	*	*	2	.G	JJ	1	.	J	0	*	*	5	G.G.G	JJJJJ
-Chromosome2	123775314	A	0	*	*	3	g,,	JJJ	1	,	J	0	*	*	5	,g,,,	JFJJJ
-Chromosome2	123784232	G	1	,	J	0	*	*	0	*	*	2	A.	ss	1	a	J
-Chromosome2	123801432	A	0	*	*	0	*	*	1	G	J	1	.	J	2	.G	AJ
-Chromosome2	123803311	T	0	*	*	0	*	*	3	..C	JJJ	1	.	J	2	.-1A.	AJ
-Chromosome2	123803323	G	0	*	*	0	*	*	3	.A.	FJJ	1	.	J	2	AC	FJ
-Chromosome2	123803368	A	0	*	*	0	*	*	3	GGG	AJs	1	.	J	2	G.	JJ
-Chromosome2	123835514	A	0	*	*	0	*	*	2	G.	os	2	G.	ss	1	G	s
-Chromosome2	123835547	G	0	*	*	0	*	*	3	A..	sss	2	A.	oj	1	.	s
-Chromosome2	123835583	C	0	*	*	0	*	*	2	,,	JJ	2	g,	JJ	1	T	s
-Chromosome2	123909645	G	0	*	*	1	.	J	2	A.	JA	0	*	*	1	A	J
-Chromosome2	123909714	C	0	*	*	1	G	s	2	.T	JA	0	*	*	1	.	J
-Chromosome2	123909723	G	0	*	*	1	A	s	2	..-1T	sF	0	*	*	1	.	s
-Chromosome2	123909789	C	0	*	*	1	*	J	2	,t	JJ	0	*	*	1	,	F
-Chromosome2	123911463	G	1	.	J	0	*	*	1	A	F	0	*	*	2	A.	FJ
-Chromosome2	123943841	A	1	.-1T	J	0	*	*	0	*	*	1	.-1T	o	1	.-1T	J
-Chromosome2	124020389	T	2	.C	AF	0	*	*	2	CC	ss	1	.	s	0	*	*
-Chromosome2	124020394	G	2	.C	J<	0	*	*	2	CC	ss	1	.	s	0	*	*
-Chromosome2	124020413	T	2	.C	<<	0	*	*	2	CC	ss	1	.	s	0	*	*
-Chromosome2	124020425	G	2	.A	JF	0	*	*	2	AA	ss	1	.	s	0	*	*
-Chromosome2	124020434	C	2	.G	AF	0	*	*	2	GG	ss	1	.	s	0	*	*
-Chromosome2	124020460	T	2	.C	7J	0	*	*	2	CC	ss	1	.	o	0	*	*
-Chromosome2	124219406	A	2	.G	JJ	0	*	*	1	G	J	0	*	*	1	.	F
-Chromosome2	124219560	C	2	,t	JJ	0	*	*	1	,	J	0	*	*	1	t	F
-Chromosome2	124219614	G	2	a,	JJ	0	*	*	1	a	F	0	*	*	1	,	J
-Chromosome2	124251413	A	1	.	F	1	C	7	2	c.	JA	0	*	*	0	*	*
-Chromosome2	124251415	G	1	C	F	1	.	7	2	,C	JA	0	*	*	0	*	*
-Chromosome2	124273425	A	0	*	*	1	.	F	2	,G	FJ	0	*	*	1	G	J
-Chromosome2	124273850	C	0	*	*	2	,T	JV	1	t	F	0	*	*	1	,	J
-Chromosome2	124361091	C	0	*	*	2	.A	JJ	1	.	J	1	*	D	0	*	*
-Chromosome2	124361144	T	0	*	*	2	.C	eo	1	.	J	1	C	V	0	*	*
-Chromosome2	124361155	C	0	*	*	2	.T	fo	1	.	J	1	T	H	0	*	*
-Chromosome2	124361194	A	0	*	*	2	.G	es	1	.	J	1	G	j	0	*	*
-Chromosome2	124484954	T	0	*	*	0	*	*	2	C.	JO	2	..	nn	1	C	J
-Chromosome2	124484970	T	0	*	*	0	*	*	2	C.	so	2	..	oo	1	C	o
-Chromosome2	124484986	A	0	*	*	0	*	*	2	..-1T	js	2	.G	sj	1	.	s
-Chromosome2	124485038	C	0	*	*	0	*	*	2	A.	ss	2	..	ss	1	A	s
-Chromosome2	124485095	T	0	*	*	0	*	*	2	,,-1a	JJ	2	,,	JJ	1	,-1a	J
-Chromosome2	124642794	A	0	*	*	1	G	7	1	.	s	2	g.	7s	0	*	*
-Chromosome2	124642829	A	0	*	*	1	C	s	1	.	s	2	c.	Fo	0	*	*
-Chromosome2	124642833	G	0	*	*	1	C	s	1	.	s	2	c.	JS	0	*	*
-Chromosome2	124660286	C	0	*	*	1	.	F	1	G	J	2	.G	`J	0	*	*
-Chromosome2	124702902	C	0	*	*	1	,	A	0	*	*	2	.A	sR	1	A	o
-Chromosome2	124702944	A	0	*	*	1	,	7	0	*	*	2	.G	sj	1	G	o
-Chromosome2	124791855	A	2	.+1C.+1C	AC	0	*	*	1	.+1C	A	2	.+1C.+1C	CC	0	*	*
-Chromosome2	124791866	T	2	.-1A.-1A	JA	1	.-1A	J	1	.-1A	J	2	..	JJ	0	*	*
-Chromosome2	124918637	G	0	*	*	1	,	J	4	,,t,	FJJJ	0	*	*	3	t,,	JJJ
-Chromosome2	124918640	C	0	*	*	1	t	J	4	,,,g	JJJJ	0	*	*	3	,t,	JJJ
-Chromosome2	124918655	C	0	*	*	1	t	J	4	,,,t	JJJJ	0	*	*	3	,t,	JJJ
-Chromosome2	124918656	C	0	*	*	1	t	J	4	,,,,	JJJJ	0	*	*	3	,t,	JJJ
-Chromosome2	124918662	C	0	*	*	1	g	J	4	,,,,	JJJJ	0	*	*	3	,g,	JJJ
-Chromosome2	124918663	C	0	*	*	1	g	J	4	,,,t	FJJJ	0	*	*	3	,gt	JJJ
-Chromosome2	124983546	C	2	..+4ATAT	J<	1	.-2AT	J	0	*	*	0	*	*	1	.-2AT	J
-Chromosome2	125011980	T	0	*	*	0	*	*	1	,-2aa	C	1	,-2aa	6	1	,	<
-Chromosome2	125029428	G	2	,t	JJ	0	*	*	1	t	J	1	.	s	0	*	*
-Chromosome2	125029494	C	2	,g	JJ	0	*	*	1	g	J	1	,	J	0	*	*
-Chromosome2	125029513	A	2	tc	JJ	0	*	*	1	c	J	1	,	F	0	*	*
-Chromosome2	125275650	A	0	*	*	2	g,	JJ	2	.g	sJ	0	*	*	1	,	J
-Chromosome2	125298596	C	0	*	*	0	*	*	2	.G	FJ	1	.	J	1	A	E
-Chromosome2	125462518	A	3	.G.	JFJ	0	*	*	0	*	*	1	.	J	1	C	F
-Chromosome2	125462561	G	2	.-2AA.-2AA	JJ	0	*	*	0	*	*	1	.-2AA	J	1	.-2AA	J
-Chromosome2	125463011	C	3	t,,	JFJ	0	*	*	0	*	*	1	,	J	1	t	F
-Chromosome2	125484610	G	0	*	*	0	*	*	1	.	J	2	A.	JF	1	A	J
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-Chromosome2	163908413	A	0	*	*	0	*	*	2	G.	EJ	1	G	E	2	..	JJ
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-Chromosome2	163908786	G	0	*	*	0	*	*	1	a	J	2	A,	sJ	2	,,	FJ
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-Chromosome2	163908850	A	0	*	*	0	*	*	1	c	J	2	,c	JJ	2	,,	JJ
-Chromosome2	163928766	C	2	,-1g,-1g	JJ	1	,-1g	<	1	,-1g	J	1	,-1g	J	1	,-1g	F
-Chromosome2	163938734	A	1	.-7TCAATTC	8	1	.	7	0	*	*	1	.-7TCAATTC	8	0	*	*
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-Chromosome2	164420102	G	2	,-4ttgc,-4ttgc	55	0	*	*	0	*	*	1	,-4ttgc	5	1	,-4ttgc	5
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-Chromosome2	164470267	A	2	,-9gtgtttagg,	7J	5	..,-9gtgtttagg,-9gtgtttagg,	sV77J	3	.,-9gtgtttagg,	s7J	5	,-9gtgtttagg,,,,	7JJJJ	7	..,-9gtgtttagg,,,,	oa7JJJJ
-Chromosome2	164495501	G	0	*	*	1	.	s	1	A	M	2	A.	os	0	*	*
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-Chromosome2	164936244	C	1	T	J	1	.	J	0	*	*	2	.A	JJ	0	*	*
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-Chromosome2	213628668	G	3	.T.	JJJ	8	......T.	oJsssJJJ	7	.......	FJJJFkJ	11	..T...T...,	JsVoJJJJJJs	4	T...	JsJJ
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-Chromosome2	213638831	C	2	,+4tata,+4tata	JJ	2	,+4tata,+4tata	JJ	7	,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata	JJJJJJ>	4	,-2ta,+4tata,+4tata,+4tata	JJJ<	10	,,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata,+4tata	JJJHJFJJ<:
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-Chromosome2	223768078	C	1	.	<	0	*	*	2	A.	oJ	2	.A	`J	0	*	*
-Chromosome2	223768086	C	1	.	7	0	*	*	2	T.	oJ	2	.T	oA	0	*	*
-Chromosome2	223805618	A	3	G.G	sss	3	GGG	sss	10	..G....G..	ksssss`sss	8	G.G..GG.	sssRso`o	9	.GG...G.G	ssosesssj
-Chromosome2	223996769	G	7	.......	JJJFJJJ	0	*	*	0	*	*	1	A	5	2	T.	77
-Chromosome2	224110733	A	1	.-8CTCAAGGT	Q	0	*	*	0	*	*	1	.	e	1	,-8ctcaaggt	F
-Chromosome2	224112824	A	2	.C	JJ	0	*	*	1	C	J	0	*	*	2	.C	JJ
-Chromosome2	224112836	C	2	..	JJ	0	*	*	1	T	J	0	*	*	2	.A	AJ
-Chromosome2	224276594	A	0	*	*	1	,	F	0	*	*	1	,-1g	J	1	,-1g	J
-Chromosome2	224308837	G	2	t,	FJ	2	,t	JJ	2	,c	JJ	0	*	*	2	,,	AJ
-Chromosome2	224354928	A	0	*	*	1	.	k	1	g	J	2	g,	JA	0	*	*
-Chromosome2	224406656	T	0	*	*	0	*	*	4	C.,c	JjJH	1	,	7	2	,C	Fo
-Chromosome2	224406695	A	1	,	J	0	*	*	5	G,.,g	9JsJJ	0	*	*	2	,G	Js
-Chromosome2	224406709	G	1	,	A	0	*	*	4	,.,a	JsJJ	0	*	*	2	,A	Fs
-Chromosome2	224406716	A	1	,	J	0	*	*	3	.,t	sJJ	0	*	*	2	,T	Js
-Chromosome2	224406758	T	1	c	F	0	*	*	5	A,,,,	sJJ77	0	*	*	1	a	J
-Chromosome2	224409674	C	1	.	J	2	T.	sJ	0	*	*	1	A	J	0	*	*
-Chromosome2	224584146	C	1	.-1G	J	0	*	*	1	.-1G	o	1	,$	J	0	*	*
-Chromosome2	224623633	G	0	*	*	1	.	J	1	C	J	0	*	*	3	ACC	JJJ
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-Chromosome2	224629753	A	2	.G	JJ	2	G.	Js	0	*	*	1	.	s	0	*	*
-Chromosome2	224629773	A	2	.C	JJ	2	CG	Js	0	*	*	1	.	s	0	*	*
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-Chromosome2	224731330	G	0	*	*	1	.-1A	j	1	.-1A	j	1	.-1A	V	1	.	o
-Chromosome2	224853484	G	1	.-1A	J	1	A	;	3	.-1A.-1A.-1A	JJJ	1	.	J	0	*	*
-Chromosome2	225033332	C	0	*	*	1	.-3TTT	J	1	.-3TTT	s	1	.-2TT	J	0	*	*
-Chromosome2	225119283	A	2	gg	JF	1	,	J	0	*	*	0	*	*	6	,,g,g,	JJJJJJ
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-Chromosome2	225265371	G	1	.	J	0	*	*	1	.-3TGA	7	1	,-3tga	=	0	*	*
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-Chromosome2	225461903	T	0	*	*	2	,c	AJ	2	,c	AJ	0	*	*	1	,	A
-Chromosome2	225478326	T	3	,,-1a,-1a	JJJ	0	*	*	1	,-2aa	J	0	*	*	1	,-1a	J
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-Chromosome2	225665980	T	2	.G	AJ	1	G	J	0	*	*	0	*	*	1	.	7
-Chromosome2	225667093	C	2	G.	JJ	1	.	J	1	G	J	0	*	*	0	*	*
-Chromosome2	225781624	C	2	AA	AF	0	*	*	3	...	JJJ	1	T	J	3	T.T	JFA
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-Chromosome2	225910354	A	2	G.	JJ	1	.	J	0	*	*	0	*	*	2	.G	JJ
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-Chromosome2	226054314	G	1	.-1A	J	0	*	*	2	.-1A.-1A	JJ	0	*	*	1	.-1A	J
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-Chromosome2	226054507	A	1	t	J	0	*	*	2	t,	JJ	0	*	*	1	,	7
-Chromosome2	226054508	C	1	a	J	0	*	*	2	a,+4agta	JJ	0	*	*	1	,+4agta	F
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-Chromosome2	226217645	C	1	,+1t	F	3	.+1T,+1t,+1t	JJJ	0	*	*	3	.$.+1T,+1t	RJJ	4	.+1T.+1T,+1t.	JAJJ
-Chromosome2	226279624	A	34	.T........................G.......	JJJJJJJJJJJFFJJJJFJJAJJJJJJJJJJJJJ	12	...T........	JJJJJJJJJJAJ	24	..................T.....	JJJJJJJJJJJJJJJJJJJJJJJJ	20	..........T.........	JJJJJJJJJJJJJJJJJJFJ	39	.........G....T........................	JJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJF
-Chromosome2	226279823	G	34	,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,a,	JJJJJJJJJJFJJJ7FJJJJFJJJJJJJJJJJ77	12	,,,,,,a,,,,,	FJJJJJAJAJ<J	24	,,,,,,a,a,,,,,,,a,,,,,,,	JJJJJAFFJFJJJFJJJFJFJJJJ	21	,a,,,,,,a,,,,,,,a,,,,	J<JJJFJJJJJJJFJJJJJJJ	39	,,a,,,,,,,,a,,a,,a,,,,,,a,,,,,,,,,,,,a,	JJJJJJAJJJJ<JF7JJJJJJJJJFJJJJJJFJJJJJFJ
-Chromosome2	226279825	T	33	,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,	JFJFJJJJFF7FJJFJJJJJJJJJJJJJJJJFF	12	,,,,,,,,c,,c	JJJJJJJJJJFJ	24	,,,,,c,,,,,,,,,,,,,,,,,,	JJJFJAJFJJJJJJJJJJJJJJJF	20	,,,,c,,,,,,,,,,,,,,,	JFJJJJJJJJJJJJJJJJ7J	37	,,,,,,,c,,,,,,,,,,c,,,,,,,,,,,,,c,,,,	J<FJFJJJJAJFJJJJJJJJJJFJJJJJJJJJJJJJJ
-Chromosome2	226279873	A	34	,,,,,,,,,,,,,,c,c,,,,,c,,,,,,,,,,,	JJJAJJJJJJ<JAFAFJJJJFJJFJJJJJJJJF<	11	,,,,,,,,c,,	JJJJJJJJJFJ	24	c,c,,,,,,,,,,,,,,,,,,,,,	JJJJJJFJJJJJJJJJJJJFJJJF	21	,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJJJJJJJJJJJJJJ	39	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,	JJJJJJJJJJJFJJAJJJJJJJJJJFJJJJJJJJJJJJJ
-Chromosome2	226282284	A	3	...	FJJ	0	*	*	0	*	*	1	T	J	4	T..T	JFJJ
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-Chromosome2	226450632	A	2	.-5TTGTT.-5TTGTT	JJ	0	*	*	1	.-5TTGTT	J	0	*	*	2	..-5TTGTT	<J
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-Chromosome2	226910387	A	3	,gg	JJJ	0	*	*	2	g,	JJ	0	*	*	1	.	s
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-Chromosome2	250344794	T	0	*	*	1	,-1a	J	1	,-1a	J	1	,-1a	J	0	*	*
-Chromosome2	250579791	G	5	....A	JAJJJ	2	T.	JJ	2	..	J<	0	*	*	7	.....A.	JJFJJJJ
-Chromosome2	250579814	T	5	.....	J7JJJ	2	.A	J<	1	A	J	0	*	*	7	.....A.	JJJFJJJ
-Chromosome2	250579815	A	5	TGGGG	JAJFJ	2	G.	JJ	1	.	J	0	*	*	7	.GG.G.G	JJJJJJJ
-Chromosome2	250579932	G	1	a	<	1	,	F	0	*	*	0	*	*	4	,,.a	JJ7J
-Chromosome2	250579944	C	1	,	J	1	t	J	0	*	*	0	*	*	4	tt.t	JJJJ
-Chromosome2	250586436	C	0	*	*	0	*	*	1	a	J	2	a,	JJ	1	,	J
-Chromosome2	250589077	C	1	A	J	2	A.	J<	0	*	*	1	.	J	0	*	*
-Chromosome2	250589311	C	1	g	J	3	g,,	FFJ	0	*	*	1	,	J	0	*	*
-Chromosome2	250589341	G	1	,	J	3	,,a	JAF	0	*	*	1	a	J	0	*	*
-Chromosome2	250841153	C	4	,tt,	JJFJ	1	,	J	0	*	*	4	,,t,	JJJJ	3	t,t	JJJ
-Chromosome2	250965700	T	0	*	*	2	.$C$	gJ	4	C$.$.$.$	Jggc	4	.$.$C$.$	ggJg	2	.$C$	VJ
-Chromosome2	251089785	C	0	*	*	1	G	F	1	.-1G	J	1	.-1G	o	0	*	*
-Chromosome2	251115454	G	0	*	*	1	,	a	0	*	*	2	.A	JJ	1	A	<
-Chromosome2	251115482	G	0	*	*	1	a	s	0	*	*	2	.A	JF	1	.	7
-Chromosome2	251372351	T	0	*	*	1	.	J	1	.-1A	7	0	*	*	1	.-1A	J
-Chromosome2	251551402	T	1	c	J	1	.	s	0	*	*	2	.C	sJ	0	*	*
-Chromosome2	251605468	T	2	..	7J	0	*	*	2	.C	JF	0	*	*	1	C	J
-Chromosome2	251605494	C	2	..	7J	0	*	*	2	.G	J7	0	*	*	1	G	F
-Chromosome2	251605676	G	2	,,	7J	0	*	*	2	a,	J<	0	*	*	1	a	J
-Chromosome2	251612497	G	14	,tt,,tt,t,tt,,	J<JJJAJJJJJJJJ	1	t	J	12	t,ttt,tt,,,t	JJAJJFFJ7JJF	3	t,,	JFJ	8	t,t,,,,,	JFJ7FJJA
-Chromosome2	251612557	A	13	,g,,gg,g,gg,,	JJJAAJJJJJJJJ	1	g	J	13	g,ggg,,gg,,,g	FJJJJJ7JJAJJJ	3	g,,	J7J	8	,gg,,,,,	FJJ<JJJJ
-Chromosome2	252069976	G	2	T.	JJ	1	T	J	1	.	J	0	*	*	0	*	*
-Chromosome2	252069999	A	2	T.	<J	1	T	J	1	.	J	0	*	*	0	*	*
-Chromosome2	252080129	T	0	*	*	2	..	JJ	0	*	*	2	G.	J7	3	GGG	JFJ
-Chromosome2	252080227	G	0	*	*	2	AA	FF	0	*	*	2	..	JF	3	..A	JJJ
-Chromosome2	252080420	A	0	*	*	3	.gg	oJJ	0	*	*	1	g	J	3	,,,	JJJ
-Chromosome2	252080457	C	0	*	*	3	.tt	oJJ	0	*	*	2	,t	FJ	3	,,,	JJJ
-Chromosome2	252141805	A	0	*	*	1	,-6gggagg	6	1	,	J	0	*	*	1	,-6gggagg	6
-Chromosome2	252172916	C	1	.-1A	s	0	*	*	1	.-1A	s	1	.-1A	a	0	*	*
-Chromosome2	252241769	G	0	*	*	0	*	*	1	.	J	1	A	J	2	.C	BJ
-Chromosome2	252241802	A	0	*	*	0	*	*	1	G	J	1	.	J	2	.G	FJ
-Chromosome2	252380255	C	2	G,	VJ	0	*	*	1	g	J	0	*	*	1	,	J
-Chromosome2	252380310	G	2	A,	jJ	0	*	*	1	a	J	0	*	*	1	,	F
-Chromosome2	252440231	G	0	*	*	3	C..	oss	2	..	ss	0	*	*	1	C	s
-Chromosome2	252486136	A	2	.G	JJ	0	*	*	0	*	*	1	.	J	1	G	J
-Chromosome2	252486137	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	1	C	J
-Chromosome2	252486162	C	2	.T	JJ	0	*	*	0	*	*	1	.	J	1	T	J
-Chromosome2	252486163	C	2	.T	FJ	0	*	*	0	*	*	1	.	J	1	T	J
-Chromosome2	252486176	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	1	C	J
-Chromosome2	252486187	T	2	.G	JJ	0	*	*	0	*	*	1	.	J	1	G	J
-Chromosome2	252486424	G	2	t,	JJ	0	*	*	0	*	*	2	,,	JJ	1	t	J
-Chromosome2	252844176	C	2	,,	JJ	0	*	*	3	,t,	JJJ	0	*	*	3	t,,	FJJ
-Chromosome2	252871443	G	0	*	*	0	*	*	1	.	J	1	,-1t	J	1	.-1T	s
-Chromosome2	253165416	T	0	*	*	1	C	s	0	*	*	1	.	j	2	C.	ss
-Chromosome2	253229050	G	0	*	*	1	.	F	2	A.	JF	0	*	*	3	..A	JJ;
-Chromosome2	253229206	T	0	*	*	1	c	J	2	c,	JJ	0	*	*	3	,,,	JFJ
-Chromosome2	253485543	C	0	*	*	1	t	J	0	*	*	2	T.	sJ	1	.	J
-Chromosome2	253485551	G	0	*	*	1	a	J	0	*	*	2	.A	sJ	2	..	FJ
-Chromosome2	253485559	T	0	*	*	1	,	F	0	*	*	2	A.	oJ	1	C	J
-Chromosome2	253485563	A	0	*	*	1	g	J	0	*	*	2	G.	sJ	1	.	F
-Chromosome2	253485587	G	0	*	*	1	a	J	0	*	*	2	A.	sJ	1	.	F
-Chromosome2	253485619	A	0	*	*	1	c	J	0	*	*	2	T.	so	2	C,	JF
-Chromosome2	253485630	C	0	*	*	1	a	J	0	*	*	2	t.	Js	2	.,	sF
-Chromosome2	253485631	A	0	*	*	1	g	J	0	*	*	2	g.	Js	2	G,	oF
-Chromosome2	253485655	T	0	*	*	1	a	J	0	*	*	2	a.	:s	2	,a	JJ
-Chromosome2	253485667	G	0	*	*	1	t	J	0	*	*	1	.	e	2	,t	FJ
-Chromosome2	253587578	G	1	.	J	3	.A.	FJJ	0	*	*	2	.A	FJ	0	*	*
-Chromosome2	253587714	C	1	a	J	3	.$t,	iF7	0	*	*	2	,,	AJ	1	T	o
-Chromosome2	253641256	G	2	.A	JA	2	AA	JJ	0	*	*	0	*	*	2	A.	JJ
-Chromosome2	253641451	C	1	t	J	2	,,	JJ	0	*	*	0	*	*	2	,t	J<
-Chromosome2	253789872	C	2	G.	FJ	0	*	*	1	G	J	1	.	J	0	*	*
-Chromosome2	254090783	C	0	*	*	1	,	s	2	.+1A.	ss	0	*	*	2	.+2AA.	\j
-Chromosome2	254090803	G	0	*	*	1	t	s	2	T.	ss	0	*	*	2	.A	oA
-Chromosome2	254090820	A	0	*	*	1	,	s	2	.C	ss	0	*	*	2	CC	\s
-Chromosome2	254134402	G	1	.-2AA	;	0	*	*	1	.-1A	J	0	*	*	1	.-2AA	F
-Chromosome2	254137251	T	0	*	*	1	,-2aa	J	1	,-1a	J	1	,-1a	J	0	*	*
-Chromosome2	254155337	C	1	.-4CATG	<	1	,	F	1	.-4CATG	<	1	.-4CATG	W	0	*	*
-Chromosome2	254177680	G	0	*	*	8	A.A.AA..	oJJJJFJJ	2	AA	JJ	5	AAA..	JJJeJ	6	..AAAA	JJJJFJ
-Chromosome2	254177736	C	0	*	*	9	....A,...	ko_s=Jsos	2	..	s`	5	..T..	ooMej	6	....T.	oesoQs
-Chromosome2	254177820	T	0	*	*	8	,,c,cc,C	JJJJJJJs	2	,,	JJ	4	,,,c	JJJJ	6	c,,,,c	FJJJJJ
-Chromosome2	254497449	C	0	*	*	1	.-1A	s	1	.	o	1	.-1A	F	0	*	*
-Chromosome2	254713610	C	2	TA	FA	0	*	*	2	TT	JJ	0	*	*	1	.	J
-Chromosome2	254782078	T	0	*	*	2	.C	F<	0	*	*	1	C	J	1	.	J
-Chromosome2	254782378	G	0	*	*	2	a,	JJ	0	*	*	1	a	J	1	,	F
-Chromosome2	254782380	A	0	*	*	2	g,	JJ	0	*	*	1	g	J	1	,	J
-Chromosome2	254782384	T	0	*	*	2	,-1a,	JJ	0	*	*	1	,-1a	<	1	,	J
-Chromosome2	254785899	T	0	*	*	1	.	s	0	*	*	1	.-5GATAG	K	1	,-5gatag	6
-Chromosome2	254799316	G	3	,aa	JJJ	1	,	F	0	*	*	0	*	*	2	a,	JJ
-Chromosome2	254828297	T	0	*	*	0	*	*	1	.-1C	I	1	.-1C	I	1	.	J
-Chromosome2	255001220	C	0	*	*	0	*	*	1	.	J	2	.T	FJ	2	.T	JJ
-Chromosome2	255001230	A	0	*	*	0	*	*	1	.	J	2	.T	JJ	2	.T	JJ
-Chromosome2	255001244	G	0	*	*	0	*	*	1	.	J	1	T	J	2	.T	JJ
-Chromosome2	255001245	G	0	*	*	0	*	*	1	T	J	2	..	AJ	2	T.	JJ
-Chromosome2	255001300	A	0	*	*	0	*	*	1	T	J	2	T.	AJ	2	..	JJ
-Chromosome2	255001316	C	0	*	*	0	*	*	1	.	J	1	A	A	2	.A	JJ
-Chromosome2	255001340	G	0	*	*	0	*	*	1	.	s	2	AT	Rs	2	.T	ss
-Chromosome2	255001358	G	0	*	*	0	*	*	1	,	J	2	,a	<J	2	,a	JJ
-Chromosome2	255047485	C	0	*	*	1	.+1T	J	2	.-1T.-1T	CF	1	.-1T	J	0	*	*
-Chromosome2	255103797	C	0	*	*	1	.	A	2	.T	sJ	1	T	J	0	*	*
-Chromosome2	255125184	T	1	C	A	2	C.	JJ	0	*	*	0	*	*	2	.C	JA
-Chromosome2	255125486	A	2	.-1T.-1T	JJ	2	.-1T.-1T	JF	0	*	*	3	.-1T.-1T.-1T	JJJ	1	.-1T	J
-Chromosome2	255125508	T	2	..-1A	JB	2	.-1A.-1A	BF	0	*	*	3	.-1A.-1A.-1A	JJJ	0	*	*
-Chromosome2	255127182	A	1	g	F	0	*	*	1	,	J	0	*	*	3	,.g	JsJ
-Chromosome2	255127190	G	1	,	<	0	*	*	1	t	J	0	*	*	4	tTt,	JsJJ
-Chromosome2	255127209	T	1	c	J	0	*	*	1	,	J	0	*	*	4	,.,c	JsJJ
-Chromosome2	255127221	C	1	,	J	0	*	*	1	t	F	0	*	*	4	t.t,	FWFJ
-Chromosome2	255196432	T	1	.-4GATC	:	1	.-4GATC	S	0	*	*	1	*	H	0	*	*
-Chromosome2	255200957	G	0	*	*	1	,-1a	J	1	,-1a	J	0	*	*	1	,-1a	J
-Chromosome2	255212967	A	0	*	*	2	c,	JJ	0	*	*	1	,	J	3	,,c	JJJ
-Chromosome2	255212989	G	0	*	*	2	,a	JJ	0	*	*	1	a	J	3	,,,	FFJ
-Chromosome2	255332613	T	0	*	*	1	,	A	2	,c	AJ	1	c	J	0	*	*
-Chromosome2	255577596	G	0	*	*	0	*	*	2	AA	JJ	1	.	J	2	.A	JJ
-Chromosome2	255585294	G	0	*	*	1	A	s	2	A.	Js	1	.	7	0	*	*
-Chromosome2	255948329	C	0	*	*	2	.T	JJ	3	..T	JJJ	1	.	J	0	*	*
-Chromosome2	255948407	C	0	*	*	2	.T	ss	3	..T	oso	1	.	s	0	*	*
-Chromosome2	255948419	C	0	*	*	2	.G	ss	3	..G	sso	1	.	s	0	*	*
-Chromosome2	255948509	T	0	*	*	1	,	A	3	cc,	JJJ	1	c	J	0	*	*
-Chromosome2	256022880	G	0	*	*	1	.-10CTCAATTTTT	J	2	..	JJ	0	*	*	1	.-10CTCAATTTTT	J
-Chromosome2	256023119	G	0	*	*	2	,,-9attttaaaa	JJ	2	,,	JJ	0	*	*	1	,-9attttaaaa	J
-Chromosome2	256100127	C	1	T	J	2	T.	JJ	0	*	*	1	.	F	0	*	*
-Chromosome2	256143824	G	0	*	*	3	.TT	sJ7	0	*	*	1	.	F	1	T	J
-Chromosome2	256359228	G	0	*	*	1	.-1A	s	0	*	*	1	.	s	2	.-1A.-1A	so
-Chromosome2	256423328	A	0	*	*	0	*	*	1	.-1T	o	1	.-1T	s	1	.-1T	s
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-Chromosome2	256432728	C	0	*	*	1	,	o	2	,T	jJ	0	*	*	1	T	J
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-Chromosome2	256432772	G	0	*	*	1	,	s	2	,T	s7	0	*	*	1	T	J
-Chromosome2	256432782	C	0	*	*	1	,-1a	s	2	,-1a.	sA	0	*	*	1	.	J
-Chromosome2	256432787	C	0	*	*	1	,	_	2	,A	sF	0	*	*	1	A	J
-Chromosome2	256432791	C	0	*	*	1	,	s	2	,A	s<	0	*	*	1	A	J
-Chromosome2	256432799	T	0	*	*	1	,	s	2	,C	sJ	0	*	*	1	C	J
-Chromosome2	256432800	A	0	*	*	1	,	s	2	,T	sJ	0	*	*	1	T	J
-Chromosome2	256432808	A	0	*	*	1	,	s	2	,C	sJ	0	*	*	1	C	J
-Chromosome2	256433352	G	1	.-1A	J	0	*	*	1	.-2AA	J	0	*	*	2	..	JJ
-Chromosome2	256433556	T	1	,-1c	F	0	*	*	1	,-1c	J	0	*	*	1	.-1C	J
-Chromosome2	256437439	G	0	*	*	1	c	J	1	,	J	0	*	*	2	..-1A	sj
-Chromosome2	256535526	G	1	.	J	1	.-1A	p	1	.-1A	s	0	*	*	0	*	*
-Chromosome2	256757252	A	2	.G	JJ	0	*	*	2	GG	sJ	0	*	*	2	TT	<J
-Chromosome2	256902641	T	1	,-1c	H	1	,-1c	H	1	,-1c	H	0	*	*	0	*	*
-Chromosome2	256908255	G	0	*	*	0	*	*	1	,-5tctga	5	1	,	J	1	.-5TCTGA	I
-Chromosome2	256908532	A	0	*	*	1	T	j	2	t,	JJ	0	*	*	1	,	J
-Chromosome2	256908538	G	0	*	*	1	.	s	2	t,	FJ	0	*	*	1	a	F
-Chromosome2	256974716	T	0	*	*	2	aa	FA	2	a,	AF	3	,,,	JJJ	0	*	*
-Chromosome2	256980711	C	1	t	A	1	,	J	3	TT,	ssJ	2	G,	UJ	0	*	*
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-Chromosome2	257259225	C	1	.-2GA	J	1	.-2GA	J	0	*	*	0	*	*	1	.-2GA	7
-Chromosome2	257548765	C	1	.	F	0	*	*	1	a	J	3	..A	JJs	0	*	*
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-Chromosome2	257548772	A	1	T	J	0	*	*	1	,	J	3	TT.	JJs	0	*	*
-Chromosome2	257548773	T	1	G	J	0	*	*	1	,	J	3	GG.	JJo	0	*	*
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-Chromosome2	257548777	G	1	.	J	0	*	*	1	t	J	2	.A	Js	0	*	*
-Chromosome2	257548782	C	1	.	A	0	*	*	1	g	J	3	..G	JJs	0	*	*
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-Chromosome2	257548790	G	1	.	J	0	*	*	1	*	G	3	..*	Jem	0	*	*
-Chromosome2	257548811	G	1	T	J	0	*	*	1	,	J	3	TT.	Fss	0	*	*
-Chromosome2	257548815	A	1	G	J	0	*	*	1	,	J	3	GG.	Aok	0	*	*
-Chromosome2	257548817	C	1	T	J	0	*	*	1	,	J	2	T.	ss	0	*	*
-Chromosome2	257673025	C	0	*	*	1	T	J	1	.	J	0	*	*	2	T.	JJ
-Chromosome2	257673029	G	0	*	*	1	A	J	1	.	J	0	*	*	2	A.	JJ
-Chromosome2	257673082	G	0	*	*	1	A	J	1	.	J	0	*	*	2	A.	JJ
-Chromosome2	257688529	T	0	*	*	1	c	J	1	,	J	2	,c	FJ	3	c,c	JJJ
-Chromosome2	257724599	G	1	.	J	2	.A	JJ	2	A.	JA	0	*	*	0	*	*
-Chromosome2	257724602	T	1	.	J	2	CC	FJ	2	C.	JA	0	*	*	0	*	*
-Chromosome2	257727975	T	0	*	*	1	.-2TA	Y	3	.-2TA.-2TA.-2TA	77Y	0	*	*	2	.-2TA.-2TA	YY
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-Chromosome2	263054589	G	6	,a,aa,	JJJJFJ	2	,,	<A	4	,,aa	JJJJ	0	*	*	2	aa	FJ
-Chromosome2	263281180	T	2	.-3GAA.	JJ	0	*	*	1	.	s	0	*	*	1	.-3GAA	F
-Chromosome2	263331964	A	1	g	J	2	,g	7F	0	*	*	0	*	*	2	,,	AF
-Chromosome2	263431764	G	2	a,	JJ	4	.,a,	`JAF	3	,a,	FJF	0	*	*	8	,,,,,,,,	FJF<7F7F
-Chromosome2	263480620	G	0	*	*	1	C	F	1	.	J	2	C.	FA	0	*	*
-Chromosome2	263513579	G	2	,a	JJ	0	*	*	1	a	J	1	,	J	0	*	*
-Chromosome2	263513591	C	2	,t	FJ	0	*	*	1	t	<	1	,	F	0	*	*
-Chromosome2	263804752	G	1	.	J	1	T	J	0	*	*	3	..T	FJJ	0	*	*
-Chromosome2	263804911	C	1	,	F	1	t	J	0	*	*	3	,t,	JA<	0	*	*
-Chromosome2	263804934	T	1	,	J	1	c	J	0	*	*	3	cc,	JJJ	0	*	*
-Chromosome2	263812195	A	3	...	esJ	1	*	o	1	.-1G	J	0	*	*	0	*	*
-Chromosome2	263812208	C	3	.T.	ssJ	1	T	s	1	.	J	0	*	*	0	*	*
-Chromosome2	263812215	G	3	..T	ssJ	1	.	s	1	A	F	0	*	*	0	*	*
-Chromosome2	263812228	G	3	..a	s<J	1	.	s	1	A	J	0	*	*	0	*	*
-Chromosome2	263838108	A	0	*	*	0	*	*	2	.G	ss	2	,,	JJ	1	G	s
-Chromosome2	263838113	C	0	*	*	0	*	*	2	.A	os	2	,,	JF	1	A	s
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-Chromosome2	263978859	G	0	*	*	1	.	J	1	A	J	0	*	*	4	.A..	JJJJ
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-Chromosome2	264070721	A	2	.G	oj	0	*	*	0	*	*	2	G.	oo	2	TT	ee
-Chromosome2	264070755	A	2	G.	kf	0	*	*	0	*	*	2	..	\s	2	GG	fj
-Chromosome2	264070778	C	2	,t	7J	0	*	*	0	*	*	2	T.	Ns	1	,	A
-Chromosome2	264070782	C	2	tt	FF	0	*	*	0	*	*	2	t.	Js	2	,,	FA
-Chromosome2	264070783	G	2	tt	<J	0	*	*	0	*	*	2	t.	Js	2	,,	<J
-Chromosome2	264115413	C	1	a	J	0	*	*	2	,a	JJ	1	.	s	0	*	*
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-Chromosome2	264528349	C	0	*	*	2	.G	os	1	A	s	0	*	*	4	...G	osss
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-Chromosome2	265543539	G	2	a,	JJ	1	,	J	0	*	*	0	*	*	1	a	J
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-Chromosome2	265969260	A	4	gg,g	FJ<J	0	*	*	2	g,	JJ	1	.	s	1	g	J
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-Chromosome2	268319939	C	0	*	*	0	*	*	2	.-3AAA.-3AAA	JJ	1	.	J	1	.-3AAA	J
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-Chromosome2	270258167	T	3	CC.	JJF	3	CAC	JJJ	4	C.C.	JJJF	1	.	J	3	..A	JJJ
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-Chromosome2	278380441	T	18	,,,,,,,,,,,,,,,,,+1a,	JJJJJJAJJJJJJJJJJF	16	,,,-1a,,,,,,,,,,,,,	JJJJJJ<JJJJJJFJJ	31	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,+1a,	JJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJ	23	,,,,,,,,,,,,,,,,,,,,,+1a,+1a,+1a	JJJJJJJJJJFJJJJJJFJJJJJ	36	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJ<JJFJJJJJJJJJJJJJJJJFJJJJJJF
-Chromosome2	278396000	G	0	*	*	0	*	*	2	A.	JF	1	A	J	3	...	JJA
-Chromosome2	278447204	T	2	,C	FJ	1	.	J	0	*	*	2	cc	JJ	0	*	*
-Chromosome2	278519381	C	0	*	*	2	.T	ss	1	.	J	2	.T	sJ	0	*	*
-Chromosome2	278520463	G	1	,-2at	F	0	*	*	1	,-2at	J	0	*	*	1	,	F
-Chromosome2	279183242	C	1	.-1G	J	1	.-1G	J	0	*	*	1	.-1G	J	0	*	*
-Chromosome2	279205546	C	0	*	*	1	t	F	2	g,	J<	0	*	*	1	,	J
-Chromosome2	279295869	A	0	*	*	1	.-1G	\	1	.-1G	J	0	*	*	2	..	<J
-Chromosome2	279311497	G	0	*	*	1	.	A	2	.T	sJ	1	C	J	0	*	*
-Chromosome2	279311645	C	0	*	*	1	,-1a	A	1	,-1a	J	1	,-1a	J	0	*	*
-Chromosome2	279446680	A	0	*	*	0	*	*	1	g	J	1	.	J	2	*,	5F
-Chromosome2	279446723	G	0	*	*	0	*	*	1	a	J	1	.	o	2	a,	JF
-Chromosome2	279446743	T	0	*	*	0	*	*	1	a	J	1	.	o	2	a,	JJ
-Chromosome2	279496710	G	1	c	J	0	*	*	2	,c	<7	1	.	s	0	*	*
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-Chromosome2	280261149	G	1	.-2TT	J	0	*	*	1	.-2TT	s	1	.-1T	J	1	.-2TT	A
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-Chromosome2	280261399	T	2	,g	JJ	0	*	*	0	*	*	1	,	<	2	,g	JJ
-Chromosome2	280426904	C	3	.-1T.-1T.-1T	JJJ	1	.-1T	A	4	.-1T.-1T.-1T.-1T	JJJJ	1	.-1T	J	5	.-1T.-1T.-1T.-1T.-1T	JJJFA
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-Chromosome2	280670472	C	1	.	J	0	*	*	1	T	J	0	*	*	2	T.	JJ
-Chromosome2	280670492	C	1	.	J	0	*	*	1	A	<	0	*	*	2	A.	IJ
-Chromosome2	280670856	C	1	t	J	0	*	*	0	*	*	1	,	F	2	t,	HF
-Chromosome2	280670885	A	1	g	J	0	*	*	1	t	J	1	,	J	2	tg	FF
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-Chromosome2	280706975	T	1	c	o	0	*	*	2	c.	jJ	1	.	J	0	*	*
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-Chromosome2	280712618	C	0	*	*	2	A,	oJ	1	.	J	0	*	*	1	,-1a	7
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-Chromosome2	281104698	G	11	,,,,,,,cc,,	JFAJJFF<FJF	9	,,,,c,,,,	JJAJFJJAF	12	,,,,,,c,,,,,	J7JJJFJ<JFJJ	8	c,,,,,,,	JJJFJJJJ	11	,,,,,,,,,,,	FFJJAJFJ<7J
-Chromosome2	281111036	T	0	*	*	2	G^X.	JA	5	GGGG^X.	JJJJA	1	G	J	2	^X.^X.	AA
-Chromosome2	281114678	T	2	.-1C.-1C	JJ	1	.-1C	J	2	.-1C.-1C	AJ	2	.-1C.-1C	JF	3	.-1C.-1C.-1C	JJJ
-Chromosome2	281115137	T	20	,,,cc,,,,,c,,,,,,,,,	FJJ7<JJ7JJFJJJJJJJJJ	8	,,,ccc,,	JAJJJJJJ	6	,,c,,,	JJJJJJ	18	,.c,,,,,,,,,c,,,,,	JsJJFFJFJJJJJJJJJJ	22	,,c,c,,,c,,,,,c,,,,,,,	FJFJFJJFJJJJJJJFJJJJJV
-Chromosome2	281115162	G	19	,,,t,,,,,t,,,,,,,,,	JJAFJJAJJJJJJJJJJJJ	8	,,,ttt,,	JJJJJJJJ	6	,,t,,,	JJJJJJ	19	,.t,,,,,,,,t,t,,,t,	JsJJJJJJJJJ7JJJJJJJ	21	,,,,t,,,t,,,,,t,,,,,,	JFJJJJJJJJJJJJJJJJJJV
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-Chromosome2	281115164	T	15	a,,,,,,,,,,,,,,	JJJFAJJAJJJJJAJ	8	,,,aaa,,	J<JJJJJJ	6	,,a,,,	JJJFJJ	17	,.a,,,,,,,,a,,,,,	JVJJJJJJJJJJJJJJJ	21	,,,a,,,a,,,,,a,,,,,,,	JJJJJJJFJJJJJJJJJJJJj
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-Chromosome2	281115608	T	11	.......C...	JJJFJJJJFJJ	2	C.	JJ	12	....C..C..CC	AJJJJJAJJJFJ	7	..C..C.	JJJJJJJ	10	C.C.......	7JJJJFJJJA
-Chromosome2	281115622	T	9	..+1G.......	JJJJJJFJJ	2	..	FF	8	.+1G.......	FAJF<JJJ	5	..-1G.-1G..	JJJAJ	10	......-1G....	7JFJJFJJJJ
-Chromosome2	281126161	A	10	*,,,,,,,t,+1t	EJJJJJJJJJ	6	,,,,t,	JJAJJF	18	,,,t,,t,,,,,t,,t,,+1t	JJJ<FJJJJJJJJJJJJJ	20	,,,*,,*,,ttt,,t,,tt,+1t	JJAEFFEJJJJFJJJJJJJF	19	***,,,tt,ttt,ttt,,,+1t	EEEJJJJJJJJFJJJJJJJ
-Chromosome2	281126193	T	12	a,,,,,,,,,a,	JJJJJJF<JJJJ	6	,,,,a,	JJJJJF	16	,,a,a,,,,,a,,,,,	JJFJJJJFJJFJAJJJ	17	,a,,a,,aa,,a,,aa,	JJJFJJJJJJJFJJJJJ	18	aaa,,,aa,aaaaaa,,,	JJJJJFJJJJJJJJJJJF
-Chromosome2	281126194	T	12	a,,,,,,,,,a,	JJJJJJFJJJJJ	6	,,,,a,	FJFJJJ	17	,,a,,a,,,,,a,,,,,	JJJAJJJJFJJJJFJJJ	17	,a,a,,aaa,,a,,aa,	JJJJJJJJFJJFJJJJJ	19	aaa,,,aa,aaa,aaa,,,	JJFJJJJJJFJ<JJJJJJA
-Chromosome2	281126196	G	12	a,,,,,,,,,a,	JJJJJJAJFJJJ	6	,,,,a,	JJJJJJ	16	,,a,,a,,,,a,,,,,	JJJFJJJJJJJJJJJJ	17	,a,,a,,aa,,a,,aa,	JJFJJJJJJJJJJJJJJ	17	aaa,,,aa,aa,aaa,,	JJAJJJJJJJJJJJFJJ
-Chromosome2	281126208	G	12	t,,,,,,,,,t,	JJJJJF7JJFJJ	6	,,,,t,	JJJJJJ	17	,,t,,t,,,,,t,,,,,	JJAJJJJJAJJJJJJJF	17	t,,t,,ttt,,t,,tt,	JJ<JJJJJJJJJJJJJF	19	ttt,,,tt,ttt,ttt,,,	JJJJJJJJJJJJJJJJFJJ
-Chromosome2	281126217	A	12	g,,,,,,,,,g,	JJJJJFJJJJJJ	6	,,,,g,	JJFJJJ	17	,,g,,g,,t,,g,,,,,	JJJFJJJJ7JJJJJJJJ	18	,gg,g,,ggg,,g,,gg,	FJDFJJJJJJJJJJJJJJ	19	ggg,,,gg,ggg,ggg,,,	FJJJJJJJJJJFJJJJJJJ
-Chromosome2	281126686	C	2	,+4atat,+4atat	JJ	0	*	*	4	,,+4atat,+4atat,	7JJ7	5	,+4atat,,+4atat,+4atat,	JFJFJ	0	*	*
-Chromosome2	281126775	G	2	a,	JJ	0	*	*	4	,,,a	JJJF	4	,,,,	JJJJ	0	*	*
-Chromosome2	281293282	G	0	*	*	1	,-1a	J	1	,-1a	A	1	.-1A	s	0	*	*
-Chromosome2	281334314	G	2	,a	JJ	1	A	o	0	*	*	1	c	J	0	*	*
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-Chromosome2	281379290	A	0	*	*	0	*	*	3	GG.	JFJ	1	.	J	1	G	J
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-Chromosome2	281379336	G	0	*	*	0	*	*	3	AA.	WoJ	1	.	s	1	A	s
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-Chromosome2	282453203	T	5	c,c,,	JJJJJ	0	*	*	9	,,,,,,c,,	JJJJJJJJJ	1	c	J	6	,,c,,,	JJJJJJ
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-Chromosome2	282579707	A	16	..G...G.........	JJJJJFJJAJJ7JJFJ	14	......G.......	JFJJJJJJJJJFJJ	17	......G..........	JJJJJJJJJJJJJJJJJ	15	...............	JJJJJJJJJJJJFJJ	32	...G....G...G..G................	JJJJJJJJJ<FJJFFJFJJJJJJJAJJJJJJJ
-Chromosome2	282579847	C	16	..............g.	<FJAF<JAJJJFJAJJ	14	......A.......	FJJJJ97JJJJJFs	17	.................	JJFJJAJJAJFAFFfsJ	16	........A.......	JJA7J<JF7FJAFJks	29	...............A.............	J<FJAFoJF7AJFJA;JFFAJAJJJF<JJ
-Chromosome2	282579927	G	16	,,,,,,,a,,,,a,,,	J<JJFFFJAJFJAF<J	15	.,,a,,,,,,,,,,,	sJJFJJAFJ<JJJJA	20	,,,,,,,,,,,t,,,,,,,,	JJJJAJJJFJJJFJJJJJJJ	17	,,,,,,,,,,,,,,,,,	JJJ<JFFJFJFJFJJF<	32	,,,,,,,a,,,,,,,,,a,,,,,,,,,,,,,,	JJAJJF7J<JJJJJJJJJJFJJJ7JJJJ<AJJ
-Chromosome2	282580038	A	15	gg,,,g,,,,,,,g,	FJJJJJJJJJJJFJJ	14	,g,g,,g,,gg,,,	JJJJJFJJJJJJJJ	16	,,gg,,,g,,,,,,,,	JJJJJJJJJJJJJJJJ	14	g,,g,,,,,,,ggg	JJJJJJJJJJJJJF	31	,,gg,,,,,,,gg,,,,,ggg,,g,,,g,,,	JJJJJJJJFJJJJJJJJJAJJJFJFJJJFJJ
-Chromosome2	282803802	T	0	*	*	1	.	j	1	a	A	0	*	*	2	a,	JJ
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-Chromosome2	283493242	C	28	.,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,,,,,,,,,,,,	oJJJEJFJFJF<JFJJJJ7JJJAJFJJJ	68	.,.,...,,,.,,+1g,+1g,+1g,+1g,+1g,+1g,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,.	sJkJsWsJJJ`FJJJJJJFJJFJJAJFJJF7JF<JJJFJJJJJFJFJFJJAJJJFJJJJ7JJJJJJJo	86	.,+1g,..,.,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,.	oJJHsJs;F<JJJFFJEJJJJJJJJJJJJFAAJJJJGEJEJ7JJJJFAJJJJ77JJAJJJFFJJJJJF<JJJJJJF<JJJJJJJJs	95	..,.,+1g.,...,.,,+1g..,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,,,,,,,,,,,t,,,,,,g,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,+1g.,	soJjAoJsos<jJJssJJJ7JJJJJJJJJ7JJJJJJAJJJJFJJJJJ<AJJJJ7JJJFJJJJJAJFFJAJJJJJFFJ7JJJJJAJFFFJJJJJsF	61	,+1g,.,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,	J<WJJJFJFJJ7JFJJJJJJFJ<FJFJFJJJAJJFJJJJAJFJJJJJJJJJJJJJJAFJ7J
-Chromosome2	283524281	T	0	*	*	2	,c	JJ	1	c	J	0	*	*	1	,	F
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-Chromosome2	283946142	G	0	*	*	0	*	*	1	.-8GAGAGAGA	D	1	.-8GAGAGAGA	@	1	.	<
-Chromosome2	283968398	G	2	,+1t,+1t	JJ	1	,+1t	F	0	*	*	0	*	*	1	a	J
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-Chromosome2	284227729	T	0	*	*	0	*	*	2	.C	LF	1	.	L	2	.C	LF
-Chromosome2	284365691	A	1	,-2gt	J	1	.-2GT	o	0	*	*	0	*	*	1	,-2gt	J
-Chromosome2	284450082	A	1	,-3tag	:	0	*	*	2	,,-3tag	7:	1	,-3tag	8	0	*	*
-Chromosome2	284912508	T	0	*	*	3	..C	JJJ	1	.	J	3	C..	JJJ	0	*	*
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-Chromosome2	284970409	T	0	*	*	1	C	s	1	.	J	0	*	*	4	C..C	JJJJ
-Chromosome2	285290600	C	0	*	*	1	,-7agctgag	?	1	,-7agctgag	>	0	*	*	1	,-7agctgag	>
-Chromosome2	285290643	G	0	*	*	1	,-3tat	F	1	,-3tat	J	0	*	*	1	,-3tat	J
-Chromosome2	285290924	A	0	*	*	1	.-3GGT	s	1	,	7	1	.-3GGT	J	0	*	*
-Chromosome2	285545393	A	0	*	*	0	*	*	1	.-4CCGT	J	2	.-4CCGT,-4ccgt	ss	1	.-4CCGT	7
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-Chromosome2	285626860	T	1	.-1C	s	2	.C	sJ	0	*	*	0	*	*	1	.-1C	J
-Chromosome2	285626874	A	1	.-8TCGATCCT	I	2	..	jF	0	*	*	0	*	*	1	.-8TCGATCCT	5
-Chromosome2	285641219	G	2	..	ss	1	T	J	2	.T	JJ	0	*	*	0	*	*
-Chromosome2	285641234	G	2	,,	JJ	1	T	J	2	.T	JF	0	*	*	0	*	*
-Chromosome2	285641284	A	2	,,	JJ	1	G	o	3	G,.	MAs	0	*	*	0	*	*
-Chromosome2	285641316	C	2	,,	JJ	1	G	s	3	G,.	fJs	0	*	*	0	*	*
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-Chromosome2	285929298	A	1	.	J	0	*	*	0	*	*	1	.-5TTTAG	G	1	.-5TTTAG	;
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-Chromosome2	285962129	G	0	*	*	1	T	J	2	T.	JJ	3	.T.	JJJ	0	*	*
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-Chromosome3	1326456	C	1	t	J	0	*	*	0	*	*	3	,,,	JJJ	3	,t,	JJJ
-Chromosome3	1326480	C	1	,	J	0	*	*	0	*	*	3	t,,	JJJ	3	,t,	JJJ
-Chromosome3	1603201	C	6	,T....	sFJJFJ	0	*	*	5	..T..	JJJFJ	2	T.	JJ	2	..	FA
-Chromosome3	1603290	G	5	,.A.A	sJF<J	2	A.	FJ	4	A...	JJoJ	2	..	JF	3	A..	JAJ
-Chromosome3	1727920	T	6	GGG.GG	JJJJJJ	10	GGGGGGGGGG	AJJJJJJJJJ	15	GGGGGG.GGGGGGG.	AJJJJJJJJJJJJJs	10	GGG.GGGGGG	JJJoJJJAJJ	12	GG.GGGGGGGGG	FJJJJJJJJJJJ
-Chromosome3	1728035	G	6	,,aa,,	JJJJJJ	11	,,,,aa,,,,,	AAJJJJJJJJJ	14	aa,a,,a,,,,aa,	FJJJJJJJJJJJJJ	9	,,aa,,,,,	JJJJJJJFJ	13	,,a,a,,,aa,aa	JJJJJJJJJFJJJ
-Chromosome3	1728040	T	6	,,gc,,	JJJJJJ	11	,,,,g,,,,,,	FJAJJJJJJFJ	15	cc,,c,,,,,,,g,g	<FJJJFJJJJJJJJF	9	,,gg,g,g,	JJJJJJJJJ	13	c,g,,,,,gg,gg	JJJJJJJJJFFJJ
-Chromosome3	1956876	T	0	*	*	1	.	J	2	.G	JJ	1	G	:	0	*	*
-Chromosome3	1956890	T	0	*	*	1	.	k	2	.C	kP	1	C	s	0	*	*
-Chromosome3	1956947	C	0	*	*	1	.	s	2	.G	sk	1	G	s	0	*	*
-Chromosome3	2190575	T	2	A.	os	0	*	*	0	*	*	1	A	j	1	.	s
-Chromosome3	2378313	G	2	A$.$	Jn	5	.$.$A$.$.	nnJns	7	.$A$.$.$.$.$.$	nFjn`nn	3	A$A$.$	9Sj	5	.$A$A$.$a	nJJnJ
-Chromosome3	2778404	A	0	*	*	0	*	*	2	.G	ss	1	.	e	2	G,	sJ
-Chromosome3	3041650	G	0	*	*	1	A	d	0	*	*	3	AA.	hoJ	1	.	]
-Chromosome3	3041657	G	0	*	*	1	T	g	0	*	*	3	.T.	soJ	1	.	s
-Chromosome3	3041739	T	0	*	*	1	g	J	0	*	*	3	g.,	JJJ	1	,	J
-Chromosome3	3097674	C	1	,	A	0	*	*	2	G,	sJ	1	G	s	0	*	*
-Chromosome3	3164186	G	1	.-1C	J	0	*	*	1	.-1C	J	1	.-1C	J	1	.-1C	J
-Chromosome3	3164395	G	1	A	s	0	*	*	2	A,	FA	1	.	s	0	*	*
-Chromosome3	3164449	C	2	t,	JJ	1	.	s	2	T,	sA	3	,.t	FsA	1	t	F
-Chromosome3	3164554	C	1	,	J	0	*	*	1	,-1t	J	1	,-1t	J	1	,-1t	J
-Chromosome3	3165071	G	1	,	J	0	*	*	2	,C	Fs	1	C	s	0	*	*
-Chromosome3	3165127	A	1	,	F	0	*	*	2	,C	Js	1	C	s	0	*	*
-Chromosome3	3165143	G	1	,	J	0	*	*	2	,T	Fs	1	T	s	0	*	*
-Chromosome3	3165152	G	1	,	J	0	*	*	2	,A	<O	1	A	O	0	*	*
-Chromosome3	3202623	G	0	*	*	2	t,	JJ	0	*	*	1	t	J	1	,	J
-Chromosome3	3234689	A	0	*	*	1	.	s	0	*	*	2	.G	ss	2	,G	os
-Chromosome3	3251333	C	0	*	*	1	,-1a	s	1	,	s	1	.-1A	F	0	*	*
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-Chromosome3	4005764	G	0	*	*	0	*	*	1	.-1C	F	1	.	J	1	.-1C	s
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-Chromosome3	4085315	A	0	*	*	1	G	s	0	*	*	2	..	JJ	2	G.	JF
-Chromosome3	4085327	G	0	*	*	1	A	s	0	*	*	2	.A	JJ	2	A.	JJ
-Chromosome3	4085369	A	0	*	*	1	G	s	0	*	*	2	.G	Js	2	G.	oe
-Chromosome3	4085382	T	0	*	*	1	G	s	0	*	*	2	..	Js	2	G.	sj
-Chromosome3	4085387	G	0	*	*	1	T	s	0	*	*	2	.T	Js	2	T.	os
-Chromosome3	4085423	C	0	*	*	1	T	s	0	*	*	2	.t	AJ	2	T.	so
-Chromosome3	4146114	G	2	T.	sJ	1	C	F	0	*	*	0	*	*	1	.	J
-Chromosome3	4146118	G	2	C.	sJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome3	4146121	G	2	.A	sJ	1	.	J	0	*	*	0	*	*	1	A	J
-Chromosome3	4146133	G	2	A.	sJ	1	A	J	0	*	*	0	*	*	1	.	J
-Chromosome3	4148817	A	0	*	*	0	*	*	1	.-1T	A	1	.-1T	J	2	.-1T.-1T	J<
-Chromosome3	4148828	A	0	*	*	0	*	*	1	.-1T	J	1	.-1T	J	2	..-1T	JJ
-Chromosome3	4725211	G	0	*	*	1	,	J	3	,,t	JJJ	1	t	J	0	*	*
-Chromosome3	4725616	T	0	*	*	1	C	s	0	*	*	1	.	F	2	.C	JJ
-Chromosome3	4725619	C	0	*	*	1	T	s	0	*	*	1	.	J	2	.T	JJ
-Chromosome3	4725621	G	0	*	*	1	A	s	0	*	*	2	.+1T^].	E=	2	.A	JJ
-Chromosome3	4725654	C	0	*	*	1	T	s	0	*	*	2	..	Js	2	.T	AJ
-Chromosome3	4725816	A	0	*	*	1	.	s	0	*	*	1	t	A	3	,,t	7FJ
-Chromosome3	4725820	C	0	*	*	1	.	s	0	*	*	1	g	A	3	,,g	AJJ
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-Chromosome3	4725839	T	0	*	*	1	.	s	0	*	*	1	c	J	3	,,c	7<J
-Chromosome3	4725844	G	0	*	*	1	.	s	0	*	*	1	,-4agca	8	2	,,-4agca	J8
-Chromosome3	4725872	T	0	*	*	1	.	o	0	*	*	1	g	J	2	,g	FJ
-Chromosome3	4725878	G	0	*	*	1	.	s	0	*	*	1	t	F	3	,,t	<<J
-Chromosome3	4725885	C	0	*	*	1	t	J	0	*	*	1	,	F	3	,t,	JFJ
-Chromosome3	4725886	G	0	*	*	1	t	J	0	*	*	1	,	J	3	,t,	JFJ
-Chromosome3	4725888	G	0	*	*	1	,	J	0	*	*	1	t	F	3	,,t	JAJ
-Chromosome3	4725907	A	0	*	*	1	t	J	0	*	*	1	,	F	3	,t,	JAJ
-Chromosome3	4732021	A	1	.	A	2	G.	<A	0	*	*	0	*	*	1	G	J
-Chromosome3	4732032	T	1	.	J	2	.C	7J	0	*	*	0	*	*	1	C	J
-Chromosome3	4771251	T	1	,	J	0	*	*	0	*	*	1	G	s	2	G,	s7
-Chromosome3	4771265	G	1	,	J	0	*	*	0	*	*	1	A	o	2	A,	o7
-Chromosome3	4771340	G	1	,	F	0	*	*	0	*	*	1	c	J	2	,c	<F
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-Chromosome3	4771348	A	1	,	F	0	*	*	0	*	*	1	g	J	2	,g	AJ
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-Chromosome3	5027149	G	2	cc	JJ	2	,c	7F	2	,c	JJ	0	*	*	0	*	*
-Chromosome3	5027159	A	2	gg	JJ	2	,g	FJ	2	,g	AJ	0	*	*	0	*	*
-Chromosome3	5027169	A	2	gg	JJ	2	,g	FJ	2	,g	JJ	0	*	*	0	*	*
-Chromosome3	5027191	G	2	aa	JJ	2	,a	AJ	2	,a	JJ	0	*	*	0	*	*
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-Chromosome3	5027194	G	2	aa	AJ	2	,a	FF	2	,a	JJ	0	*	*	0	*	*
-Chromosome3	5027196	A	2	gg	JJ	2	,g	AJ	2	,g	FJ	0	*	*	0	*	*
-Chromosome3	5027198	C	2	tt	JJ	2	,t	FF	2	,t	JJ	0	*	*	0	*	*
-Chromosome3	5027216	C	2	tt	JJ	2	,t	FJ	2	,t	JJ	0	*	*	0	*	*
-Chromosome3	5027220	T	2	cc	JJ	2	,c	AJ	2	,c	JJ	0	*	*	0	*	*
-Chromosome3	5027221	G	2	aa	JJ	2	,a	JJ	2	,a	JJ	0	*	*	0	*	*
-Chromosome3	5027240	C	2	tt	JJ	2	,t	FJ	1	,	J	0	*	*	0	*	*
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-Chromosome3	5027260	G	2	aa	JJ	2	,a	JJ	2	,a	JJ	0	*	*	0	*	*
-Chromosome3	5082847	G	1	t	7	0	*	*	2	a,	FF	0	*	*	1	,	7
-Chromosome3	5082866	C	1	g	J	0	*	*	2	a,	AJ	0	*	*	1	,	F
-Chromosome3	5169853	C	0	*	*	1	T	J	2	..	Js	0	*	*	2	T.	JJ
-Chromosome3	5169918	C	0	*	*	1	.+1T	n	2	.+1T.+1T	qq	0	*	*	2	.+1T.+1T	qU
-Chromosome3	5169961	T	0	*	*	1	C	o	2	..	os	0	*	*	2	.C	so
-Chromosome3	5169982	C	0	*	*	1	T	d	1	.	s	0	*	*	2	.T	oS
-Chromosome3	5170827	G	0	*	*	1	,-9gagaaataa	6	1	,-9gagaaataa	6	2	.,	sJ	0	*	*
-Chromosome3	5212416	A	1	,-1c	J	1	,-1c	J	2	,-1c,-1c	JJ	0	*	*	0	*	*
-Chromosome3	5380240	A	0	*	*	5	.....	oosjo	9	.....C..g	sosjoRVVA	11	.........C.	ssVooooRss`	11	........C..	oossosjosos
-Chromosome3	5401210	A	3	CC.	AJA	0	*	*	0	*	*	2	C.	JF	2	..	A<
-Chromosome3	5510623	T	1	C	<	0	*	*	2	.C	F?	1	.	s	5	..C..	AJ?JJ
-Chromosome3	5608564	G	1	,	J	1	t	J	0	*	*	0	*	*	2	t,	JJ
-Chromosome3	5722506	G	2	CC	so	1	,	F	0	*	*	2	c,	JA	0	*	*
-Chromosome3	5722541	T	2	cc	JJ	1	,	J	0	*	*	2	,c	JJ	0	*	*
-Chromosome3	5722632	C	2	gg	JJ	1	,	J	0	*	*	2	,g	JJ	0	*	*
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-Chromosome3	5798042	G	3	,,,	JJJ	2	,c	JJ	2	c,	JJ	5	c,ccc	JJJJJ	2	,c	JF
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-Chromosome3	5810822	C	0	*	*	2	.T	so	0	*	*	1	T	F	1	.	J
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-Chromosome3	5810904	G	0	*	*	2	,a	JJ	0	*	*	1	a	J	1	,	J
-Chromosome3	5836098	A	1	.	A	0	*	*	1	G	7	2	G.	JF	0	*	*
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-Chromosome3	6041099	A	0	*	*	2	.G	os	0	*	*	1	.	o	1	G	s
-Chromosome3	6041130	C	0	*	*	2	,a	JJ	0	*	*	1	,	J	1	a	J
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-Chromosome3	6364202	T	0	*	*	0	*	*	2	AA	<s	2	.A	Js	1	.	J
-Chromosome3	6364236	T	0	*	*	0	*	*	2	GG	es	2	.G	Js	1	.	J
-Chromosome3	6364282	C	0	*	*	0	*	*	1	.	s	2	,$g	AJ	1	g	J
-Chromosome3	6549346	C	0	*	*	1	,	J	6	,,,+1t,,+1t,+1t	FJEGED	3	,+1t,+1t,+1t	EEE	0	*	*
-Chromosome3	6629696	C	2	.A	JJ	0	*	*	1	.	A	1	A	J	0	*	*
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-Chromosome3	6629822	A	2	,,-2tc	JF	1	.-2TC	7	1	,-2tc	J	1	,	F	0	*	*
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-Chromosome3	6629912	C	2	,-1a,	JJ	0	*	*	1	,	F	1	,-1a	J	0	*	*
-Chromosome3	6635609	G	0	*	*	0	*	*	1	C	F	2	..	JJ	2	C.	FJ
-Chromosome3	6653667	C	1	t	A	0	*	*	1	,	J	0	*	*	2	,g	AJ
-Chromosome3	6653730	T	1	c	J	0	*	*	1	,	J	0	*	*	2	,c	JJ
-Chromosome3	6682308	A	0	*	*	0	*	*	1	.	J	2	G.	JJ	2	G.	JJ
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-Chromosome3	6687999	A	2	..	JJ	0	*	*	2	.G	JJ	1	G	J	0	*	*
-Chromosome3	6688013	G	2	..	JF	0	*	*	2	.A	JJ	1	A	J	0	*	*
-Chromosome3	6688028	T	2	..	AJ	0	*	*	2	.C	JJ	1	C	J	0	*	*
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-Chromosome3	6783056	C	1	.	<	2	.A	J@	0	*	*	0	*	*	1	A	A
-Chromosome3	6783142	C	1	.	A	2	.G	J@	0	*	*	0	*	*	1	G	8
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-Chromosome3	6903545	A	0	*	*	0	*	*	1	G	J	2	..	JJ	3	..G	JJJ
-Chromosome3	6903834	C	0	*	*	0	*	*	1	t	<	2	,,	JF	3	,,t	AJJ
-Chromosome3	6972857	C	1	,-6tgacag	6	1	.-6TGACAG	K	0	*	*	1	.	s	0	*	*
-Chromosome3	6972915	C	1	,+3gga	J	2	.+3GGA,+3gga	JJ	0	*	*	2	.+3GGA,+3gga	JJ	0	*	*
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-Chromosome3	7088018	G	3	,aa	JJJ	0	*	*	3	,aa	JJJ	0	*	*	2	,,	JJ
-Chromosome3	7148967	C	3	T.T	JJJ	0	*	*	1	T	F	0	*	*	3	..G	FJ7
-Chromosome3	7149040	T	2	..	JJ	0	*	*	1	G	7	0	*	*	3	..G	Fo7
-Chromosome3	7164129	C	0	*	*	0	*	*	4	.TTT	JAFJ	6	.T..Tt	JpAJHo	3	...	JJ7
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-Chromosome3	7164456	A	0	*	*	1	,	J	2	c,	J<	3	c,c	JJF	3	,cc	JJF
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-Chromosome3	7341118	C	0	*	*	0	*	*	1	T	j	2	A.	js	2	..	os
-Chromosome3	7442102	A	0	*	*	1	,-2ag	5	0	*	*	1	,-2ag	5	1	,-2ag	5
-Chromosome3	7442106	A	0	*	*	1	,-2ct	6	0	*	*	1	,-2ct	6	1	,-2ct	6
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-Chromosome3	7619505	G	1	a	J	3	...	JJJ	0	*	*	2	.A	sJ	0	*	*
-Chromosome3	7619529	G	1	a	J	3	...	JJJ	0	*	*	2	.A	oo	0	*	*
-Chromosome3	7721682	G	1	,	F	4	,,a,	JJAJ	0	*	*	0	*	*	1	a	J
-Chromosome3	7748070	T	1	.	J	1	.-6GTGGCA	9	0	*	*	0	*	*	1	.-6GTGGCA	9
-Chromosome3	7869272	G	1	.	J	2	.-3GCA.-3GCA	;;	1	.-3GCA	;	0	*	*	1	.-3GCA	;
-Chromosome3	8119197	T	0	*	*	0	*	*	1	.-1C	o	1	,-1c	E	1	,	F
-Chromosome3	8210388	A	0	*	*	1	,-1t	7	0	*	*	1	,-1t	A	1	,	A
-Chromosome3	8221764	A	1	.-1G	<	1	,-1g	A	0	*	*	0	*	*	1	.-1G	J
-Chromosome3	8234185	A	2	CC	Ro	0	*	*	2	.C	ss	1	.	J	0	*	*
-Chromosome3	8234212	G	2	cc	F<	0	*	*	2	C,	oJ	1	.	J	0	*	*
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-Chromosome3	52662150	T	2	A.	JJ	0	*	*	2	A.	<J	5	AA..A	JJJJJ	2	..	JJ
-Chromosome3	52668634	C	0	*	*	0	*	*	1	t	J	2	t,	sF	1	,	J
-Chromosome3	52787907	A	0	*	*	0	*	*	1	,	J	1	.-2GT	V	1	,-2gt	J
-Chromosome3	52871079	T	2	.C	sJ	2	**	AA	4	.C..	oV<s	1	.	s	0	*	*
-Chromosome3	53074866	C	0	*	*	0	*	*	1	.	s	2	g,	ss	1	T	e
-Chromosome3	53131586	T	1	A	J	0	*	*	1	C	J	0	*	*	2	CA	JJ
-Chromosome3	53131594	C	1	.	J	0	*	*	1	T	J	0	*	*	2	.T	JJ
-Chromosome3	53369419	C	1	.	J	2	T.	FJ	1	T	J	0	*	*	3	TT.	JJJ
-Chromosome3	53369434	G	1	.	J	2	.A	JJ	1	A	J	0	*	*	3	A..	JJJ
-Chromosome3	53369459	A	1	.-1C	A	2	.-1C.-1C	AA	1	.-1C	A	0	*	*	3	.-1C.-1C.-1C	AAA
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-Chromosome3	53678334	A	0	*	*	0	*	*	3	C.C	J<J	2	..	JJ	2	GG	JF
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-Chromosome3	53752528	G	3	a,,	JJF	3	.,,	sJJ	4	.,aa	sJJF	0	*	*	1	a	J
-Chromosome3	53798116	A	0	*	*	2	.C	JJ	2	..	JJ	0	*	*	3	C..	JJA
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-Chromosome3	58603087	G	0	*	*	2	T.	Js	1	.	J	1	T	s	0	*	*
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-Chromosome3	58934955	C	2	**	ee	0	*	*	1	.-3GAT	s	0	*	*	1	.-3GAT	s
-Chromosome3	59027686	A	1	.-8TGTATGTT	5	0	*	*	1	.	J	1	.-8TGTATGTT	5	0	*	*
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-Chromosome3	59196570	A	1	,	F	0	*	*	1	.-5TTGAT	I	1	.-5TTGAT	I	0	*	*
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-Chromosome3	77934077	G	0	*	*	0	*	*	2	.T	oj	1	.	s	1	T	a
-Chromosome3	77934103	C	0	*	*	0	*	*	2	.T	eo	1	.	s	1	t	J
-Chromosome3	77934155	C	0	*	*	0	*	*	2	.T	oo	1	.	s	1	t	J
-Chromosome3	77934159	A	0	*	*	0	*	*	2	.G	Vs	1	.	o	1	g	F
-Chromosome3	77970214	C	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J	1	,-1t	J
-Chromosome3	78189566	C	0	*	*	0	*	*	2	.T	J<	3	...	JFJ	2	T.	JJ
-Chromosome3	78189697	C	0	*	*	0	*	*	2	,t	JF	3	,,,	JJF	2	t,	AJ
-Chromosome3	78189824	G	0	*	*	0	*	*	1	a	J	1	,	J	2	a,	JJ
-Chromosome3	78212104	C	1	a	J	2	a,	JJ	1	t	J	0	*	*	1	,	A
-Chromosome3	78284878	G	0	*	*	6	,,,,,a	JJJJJJ	3	,,t	JJJ	1	t	J	1	,	<
-Chromosome3	78373098	C	2	..	JJ	3	.G.	JJJ	0	*	*	4	,G..	sJJJ	0	*	*
-Chromosome3	78373186	C	2	..	JJ	3	.A.	JFJ	0	*	*	4	,A..	sFss	0	*	*
-Chromosome3	78373193	C	2	..	JJ	3	.A.	FFJ	0	*	*	4	,A..	sFse	0	*	*
-Chromosome3	78718467	C	0	*	*	0	*	*	2	.-2AT.-2AT	JJ	1	.	j	1	.-2AT	J
-Chromosome3	78720420	T	0	*	*	1	^M.	A	1	C	J	0	*	*	2	C^M.	JA
-Chromosome3	78720518	T	0	*	*	2	C,	sJ	3	,,,	JFJ	0	*	*	4	C,,,	sAFJ
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-Chromosome3	78720564	C	0	*	*	2	T,	sJ	3	,,,	JJJ	0	*	*	4	T,,,	oJJF
-Chromosome3	78720573	G	0	*	*	2	,a	JJ	3	a,,	JJJ	0	*	*	4	,a,,	AJJJ
-Chromosome3	78720588	C	0	*	*	2	,t	JJ	3	ttt	JFJ	0	*	*	4	tt,t	JJFF
-Chromosome3	78720609	C	0	*	*	2	t,	JJ	3	t,,	JAJ	0	*	*	4	,,t,	FJJJ
-Chromosome3	78807172	A	1	,-1g	J	0	*	*	1	.	o	1	,-1g	J	0	*	*
-Chromosome3	79041675	G	1	a	J	1	,	J	0	*	*	2	a,	JJ	0	*	*
-Chromosome3	79069677	A	0	*	*	0	*	*	3	.G.	JJJ	1	G	J	2	TG	JJ
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-Chromosome3	79093924	T	0	*	*	0	*	*	1	.-5ACACA	J	1	.	J	1	.-5ACACA	o
-Chromosome3	79146899	G	0	*	*	1	.-1C	J	2	.A	7s	1	.	F	0	*	*
-Chromosome3	79146907	A	0	*	*	1	C	J	2	.C	Js	1	.	J	0	*	*
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-Chromosome3	79146935	C	0	*	*	1	.	J	2	.T	Fs	2	.G	JF	0	*	*
-Chromosome3	79146960	T	0	*	*	1	C	s	2	C,	s<	2	.,	sJ	0	*	*
-Chromosome3	79146991	C	0	*	*	1	G	o	2	G,	oJ	2	.,	sJ	0	*	*
-Chromosome3	79157236	G	1	.-3TAC	J	0	*	*	0	*	*	1	.-3TAC	s	1	.-3TAC	J
-Chromosome3	79489310	G	0	*	*	1	.	A	1	.-1A	J	1	.-1A	J	0	*	*
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-Chromosome3	79563980	G	0	*	*	1	.	J	2	.T	FA	0	*	*	1	T	J
-Chromosome3	79564034	G	0	*	*	1	.	F	2	.A	JF	0	*	*	1	A	J
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-Chromosome3	79731421	A	0	*	*	1	t	J	2	t,	JJ	1	,	J	0	*	*
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-Chromosome3	79733868	C	1	,	J	0	*	*	1	,-2tt	A	0	*	*	1	,-1t	J
-Chromosome3	80018020	C	1	.-4AAAA	s	0	*	*	2	.-3AAA.-3AAA	FJ	1	.-2AA	s	1	*	<
-Chromosome3	80142037	A	0	*	*	2	g,	JJ	1	,	J	0	*	*	1	g	J
-Chromosome3	80199517	G	1	C	J	0	*	*	0	*	*	1	A	J	2	.A	JJ
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-Chromosome3	80199736	C	1	a	J	0	*	*	0	*	*	1	t	J	3	,tt	JJJ
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-Chromosome3	80240801	A	1	.	s	0	*	*	2	tt	JJ	2	.G	os	0	*	*
-Chromosome3	80240806	C	1	G	o	0	*	*	2	aa	JJ	2	.A	os	0	*	*
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-Chromosome3	80452671	G	0	*	*	1	.-4GCAT	9	1	.	J	0	*	*	1	.-4GCAT	9
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-Chromosome3	80533967	T	0	*	*	0	*	*	2	.C	sJ	1	.	s	1	C	J
-Chromosome3	80533972	G	0	*	*	0	*	*	2	.A	sJ	1	.	s	1	A	J
-Chromosome3	80534060	T	0	*	*	0	*	*	3	,.G	JoF	2	.G	sJ	1	.	s
-Chromosome3	80534084	T	0	*	*	0	*	*	4	,.C,	AsJj	2	,C	AJ	1	.	s
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-Chromosome3	80534140	T	0	*	*	0	*	*	3	A,,	FJs	1	A	J	1	,	J
-Chromosome3	80599126	G	1	a	J	1	,	J	0	*	*	2	,a	FA	0	*	*
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-Chromosome3	80918577	A	6	TT..T.	<JF<JJ	4	.T.T	JJJJ	1	T	J	4	TT..	JJJJ	5	T....	JJJJJ
-Chromosome3	80918596	A	5	..G.G	JJ7JJ	4	..G.	FJJJ	1	.	J	4	..G.	JJJJ	5	.GGG.	JJJJJ
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-Chromosome3	80920096	A	11	,,,,,t,tt,,	<FJFJJJJJJF	4	,,,t	JJJJ	2	t,	JJ	3	,tt	JJJ	7	tt,,,,,	JFJJJJJ
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-Chromosome3	80940979	A	1	.	J	0	*	*	0	*	*	2	.-1T.-1T	ss	2	.-1T.	jR
-Chromosome3	80965642	T	2	C.	JJ	2	GC	<J	1	C	J	0	*	*	0	*	*
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-Chromosome3	81076154	C	1	.-1A	J	0	*	*	0	*	*	2	.-1A.-1A	JF	1	.-1A	J
-Chromosome3	81076188	A	1	.	s	0	*	*	0	*	*	2	.C	so	1	C	o
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-Chromosome3	81076218	C	1	t	J	0	*	*	0	*	*	2	.t	jJ	1	,	J
-Chromosome3	81076291	T	1	c	J	0	*	*	0	*	*	2	,c	JJ	1	,	J
-Chromosome3	81076301	C	1	,$	I	0	*	*	0	*	*	2	,-2ag,-2ag	II	1	,-2ag	I
-Chromosome3	81150642	G	4	,,+1a,+1a,+1a	JJJJ	9	,$,,,,,+1a,+1a,+1a,+1a	AAJJJFJE7	7	,+1a,+1a,+1a,+1a,+1a,+1a,+1a	FJJAJJF	20	,$,,,,,,+1a,+1a,+1a,+1a,+1a,+2aa,+1a,+1a,+1a,+1a,+1a,+1a,+1a,+1a	AFJJJJJJJJJAJJJJJJJJ	6	,+1a,+1a,+1a,,,+1a	JJJJJF
-Chromosome3	81150764	C	0	*	*	3	,+1a,+1a,+2aa	JJJ	2	,,+1a	FF	0	*	*	2	,+1a,+1a	JJ
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-Chromosome3	81175422	A	0	*	*	0	*	*	1	G	F	1	.	J	2	.G	JF
-Chromosome3	81175442	G	0	*	*	0	*	*	1	.	F	1	A	F	2	.A	FJ
-Chromosome3	81263705	A	0	*	*	2	..	je	0	*	*	3	.,g	RJJ	1	G	j
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-Chromosome3	81268217	A	9	,ttt,tt,t	JJJJJJJFJ	1	.	s	3	ttt	JJA	2	,t	<J	10	,tt,tttt,t	FJFJJJJFJJ
-Chromosome3	81467459	T	2	.A	JJ	0	*	*	0	*	*	2	A.	JJ	2	A.	JJ
-Chromosome3	81467530	C	2	..	JJ	0	*	*	0	*	*	2	.T	JJ	2	.T	JJ
-Chromosome3	81625239	G	0	*	*	0	*	*	2	a,	JJ	1	a	J	1	,	7
-Chromosome3	81674493	G	1	A	J	0	*	*	2	,A	os	2	..	FJ	0	*	*
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-Chromosome3	81674560	G	1	A	F	0	*	*	2	,A	ss	1	.	J	0	*	*
-Chromosome3	81731518	T	1	c	J	2	c,	JJ	2	c,	AJ	0	*	*	3	,,,	FJJ
-Chromosome3	81796758	G	1	,	A	0	*	*	2	,a	JJ	0	*	*	1	a	J
-Chromosome3	81796787	G	1	,	J	0	*	*	2	,a	JJ	0	*	*	1	a	J
-Chromosome3	81955183	A	2	g,	FJ	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome3	82102078	T	0	*	*	0	*	*	1	.	F	1	.-4CCAG	s	1	.-4CCAG	J
-Chromosome3	82103833	G	0	*	*	0	*	*	1	.	o	2	A.	Zs	1	A	s
-Chromosome3	82103834	T	0	*	*	0	*	*	1	.	s	2	A.	Zs	1	A	s
-Chromosome3	82103843	C	0	*	*	0	*	*	2	,a	JJ	1	,	J	1	A	s
-Chromosome3	82240421	T	1	.-4CCCC	F	1	,-4cccc	J	0	*	*	1	.	V	0	*	*
-Chromosome3	82310206	C	1	,	J	0	*	*	2	g,	JF	0	*	*	3	g,,	JJJ
-Chromosome3	82420992	G	0	*	*	2	,,	JJ	3	,a,	JJA	0	*	*	2	a.	JJ
-Chromosome3	82435637	T	0	*	*	1	.	J	0	*	*	2	C.	FJ	1	C	J
-Chromosome3	82435776	G	0	*	*	1	,	J	0	*	*	2	a,	JJ	1	a	F
-Chromosome3	82488900	C	3	..A	JAJ	1	A	F	0	*	*	0	*	*	1	.	F
-Chromosome3	82488950	C	3	T..	J<A	1	.	J	0	*	*	0	*	*	1	T	F
-Chromosome3	82488982	T	3	..C	JJJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome3	82488992	C	3	T..	J<J	1	.	F	0	*	*	0	*	*	1	T	A
-Chromosome3	82489064	C	3	,t,	JJJ	1	,	J	0	*	*	0	*	*	1	t	J
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-Chromosome3	82489178	A	3	,$g,$	>J>	1	,$	>	0	*	*	0	*	*	1	g	A
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-Chromosome3	82895275	A	2	..	JJ	0	*	*	4	.C.C	JJJJ	1	C	s	0	*	*
-Chromosome3	82895281	C	2	GG	JJ	0	*	*	4	G.G.	JJJJ	1	.	s	0	*	*
-Chromosome3	82895284	G	2	.-2CA.-2CA	JJ	0	*	*	4	.-2CA..-2CA.-2CA	JJJJ	1	.	s	0	*	*
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-Chromosome3	82895324	T	2	.+3GAA.+3GAA	JJ	0	*	*	3	.-3GAA.+3GAA.	Js<	1	.-3GAA	s	0	*	*
-Chromosome3	82895349	A	2	GG	sj	0	*	*	4	G.G.	oVsL	1	.	s	0	*	*
-Chromosome3	82895354	A	2	CC	so	0	*	*	4	C.Cc	eos7	1	.	o	0	*	*
-Chromosome3	82895372	C	2	,,	F7	0	*	*	4	.,g,	sFFJ	1	g	J	0	*	*
-Chromosome3	82895380	A	2	,-5agaat,-5agaat	66	0	*	*	4	.,-5agaat,-5agaat,	s56J	1	,	J	0	*	*
-Chromosome3	82895617	A	1	.-2GC	E	0	*	*	0	*	*	2	.-2GC.-2GC	oo	1	.-2GC	G
-Chromosome3	82896097	C	1	,-4ccta	E	1	,-4ccta	@	0	*	*	1	.-4CCTA	H	1	,-4ccta	7
-Chromosome3	82912859	A	1	.-1T	A	0	*	*	0	*	*	1	,	J	1	.-1T	J
-Chromosome3	82912909	A	1	G	o	0	*	*	1	.	i	0	*	*	3	G,,	aAA
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-Chromosome3	82912925	A	1	g	J	0	*	*	1	.	e	0	*	*	3	g,,	JJA
-Chromosome3	82912934	A	1	t	J	0	*	*	1	.	o	0	*	*	3	t,,	7FA
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-Chromosome3	82912950	C	1	a	J	0	*	*	1	.	s	0	*	*	3	a,,	<JJ
-Chromosome3	82912969	C	1	g	J	0	*	*	1	.	s	0	*	*	3	g,,	JFF
-Chromosome3	82912980	T	1	c	J	0	*	*	1	.	s	0	*	*	3	c,,	FJJ
-Chromosome3	82914954	T	1	C	J	1	.	J	0	*	*	0	*	*	2	.-1AC	AJ
-Chromosome3	82942750	T	1	a	J	2	,c	AJ	0	*	*	1	c	A	3	,,c	AAJ
-Chromosome3	83309777	C	0	*	*	0	*	*	1	,	J	2	T,	sA	2	,t	JJ
-Chromosome3	83314649	C	1	G	V	0	*	*	0	*	*	1	.	k	2	A.	FJ
-Chromosome3	83504977	A	1	G	j	0	*	*	0	*	*	3	GTT	fss	2	CC	JJ
-Chromosome3	83698670	T	1	C	s	0	*	*	1	.	a	0	*	*	3	..+5CCCGG.	NJV
-Chromosome3	83698696	G	1	T	s	0	*	*	1	.	s	0	*	*	3	.AA	oJo
-Chromosome3	83741086	G	1	t	J	0	*	*	0	*	*	1	,	J	2	T,	sF
-Chromosome3	83846986	T	0	*	*	1	c	<	3	,,c	AJJ	3	,cc	JJF	2	,c	JF
-Chromosome3	83935165	G	3	..A	J<J	1	A	J	0	*	*	0	*	*	2	A.	J7
-Chromosome3	83935172	A	3	..G	JFJ	1	G	J	0	*	*	0	*	*	2	..	JF
-Chromosome3	83935254	C	3	.AT	<AJ	1	T	J	0	*	*	0	*	*	2	..	J7
-Chromosome3	83935275	C	2	.T	<J	1	T	J	0	*	*	0	*	*	1	.	F
-Chromosome3	84017493	C	0	*	*	1	.	J	4	..TT	FJAJ	5	T.T..	JJJJJ	4	T...	JJJJ
-Chromosome3	84413795	T	0	*	*	1	,-2tg	7	1	,-2tg	;	1	,	A	0	*	*
-Chromosome3	84450912	G	1	t	J	1	,	J	0	*	*	2	t,	JF	0	*	*
-Chromosome3	84481492	G	0	*	*	1	.	J	2	T.	J7	0	*	*	2	.T	JJ
-Chromosome3	84481511	A	0	*	*	1	.	J	2	T.	FJ	0	*	*	3	T..	JJJ
-Chromosome3	84484178	G	1	.	J	2	.A	Je	2	AA	FJ	0	*	*	0	*	*
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-Chromosome3	95578645	C	1	t	J	0	*	*	0	*	*	1	,	J	2	,t	FA
-Chromosome3	95578663	C	1	t	J	0	*	*	0	*	*	1	,	J	2	,t	JJ
-Chromosome3	95636267	C	1	t	J	0	*	*	1	,	J	0	*	*	2	t,	JJ
-Chromosome3	95887937	C	1	g	J	0	*	*	1	.	J	3	,TT	JJJ	0	*	*
-Chromosome3	95887994	C	1	t	J	0	*	*	2	a.	Jj	4	,..,	Jsss	0	*	*
-Chromosome3	95888000	C	1	,	J	0	*	*	2	a.	Js	4	,$AA,	Asss	0	*	*
-Chromosome3	95888017	C	1	,	J	0	*	*	2	g.	As	3	GG,	sss	0	*	*
-Chromosome3	95888020	C	1	,	J	0	*	*	2	,T	Fs	3	..t	sss	0	*	*
-Chromosome3	95888032	A	2	,.	JJ	0	*	*	3	,C.	JsJ	3	..c	sss	0	*	*
-Chromosome3	95888048	A	2	,C	JJ	0	*	*	4	,.C.	JsJ7	3	..,	sss	0	*	*
-Chromosome3	95888049	A	2	g.	JJ	0	*	*	4	gG..	JsJF	3	GGg	sss	0	*	*
-Chromosome3	95900998	T	1	c	F	3	cc,	JJJ	4	.,,,	sAJJ	8	,c,ccccc	FJJJJAJJ	7	,ccc,,,	JJJJJ7J
-Chromosome3	95996791	G	1	a	s	2	TA	JJ	0	*	*	0	*	*	1	.	J
-Chromosome3	96000070	T	1	,	J	0	*	*	1	,-1g	I	0	*	*	1	,-1g	F
-Chromosome3	96092109	C	4	..T.	FAAJ	1	T	J	4	....	<JFs	0	*	*	3	..T	JJJ
-Chromosome3	96210265	C	2	.T	JJ	1	T	J	1	.	J	0	*	*	0	*	*
-Chromosome3	96210407	A	2	ct	JJ	1	t	J	1	c	A	0	*	*	0	*	*
-Chromosome3	96210413	C	2	a,	JJ	1	,	J	1	a	J	0	*	*	0	*	*
-Chromosome3	96225348	A	0	*	*	1	.-1T	<	1	.-1T	J	0	*	*	2	..	JJ
-Chromosome3	96254345	C	1	A	J	2	A.	JJ	0	*	*	1	.	J	0	*	*
-Chromosome3	96254347	A	1	.	J	2	.G	JF	0	*	*	1	G	J	0	*	*
-Chromosome3	96254356	C	1	.	J	2	.G	JF	0	*	*	1	G	J	0	*	*
-Chromosome3	96254374	C	1	.	J	2	.A	JF	0	*	*	1	A	J	0	*	*
-Chromosome3	96254403	A	1	G	J	2	G.	JJ	0	*	*	1	.	J	0	*	*
-Chromosome3	96254424	C	1	.	J	2	.G	JJ	0	*	*	2	GG	J7	0	*	*
-Chromosome3	96254541	G	1	a	J	2	a,	JJ	0	*	*	2	.,	\J	0	*	*
-Chromosome3	96254604	T	1	c	J	2	c,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome3	96254640	C	1	t	J	2	t,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome3	96254642	G	1	a	J	2	a,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome3	96254649	A	1	,	J	2	,g	JJ	0	*	*	1	g	J	0	*	*
-Chromosome3	96359760	C	0	*	*	0	*	*	2	.G	JJ	2	.G	JJ	1	.	J
-Chromosome3	96360083	T	0	*	*	1	g	J	1	,	J	2	g,	7F	0	*	*
-Chromosome3	96360094	C	0	*	*	0	*	*	2	t,	J7	2	t,	<J	1	,	A
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-Chromosome3	96430239	C	0	*	*	1	.	F	1	G	F	0	*	*	3	..G	JFB
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-Chromosome3	96430281	A	0	*	*	1	T	J	1	.	J	0	*	*	3	T..	JAJ
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-Chromosome3	96489382	G	1	.-2TC	J	1	.-2TC	J	1	.	F	1	.-2TC	F	0	*	*
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-Chromosome3	96934743	T	0	*	*	2	G.	JE	2	G.	;s	1	G	J	1	.	J
-Chromosome3	96934756	G	0	*	*	2	A.	Js	1	.	s	1	A	7	0	*	*
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-Chromosome3	97073409	A	0	*	*	2	G.	JJ	0	*	*	1	.	J	1	G	J
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-Chromosome3	102039985	C	2	,a	J<	3	,aa	FFJ	0	*	*	1	a	J	0	*	*
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-Chromosome3	143733323	T	1	,	>	0	*	*	0	*	*	1	,-1g	J	1	,-1g	J
-Chromosome3	143819255	C	6	....TT	7JJJJJ	8	....T.TT	JJJJJJFJ	9	.....T..T	JJJJJJJJJ	8	.TT...T.	JJJJJAFJ	10	T.TTT.....	AJFJJJJ<JJ
-Chromosome3	143819261	C	6	GGG...	7JJJJJ	8	GGGG.G..	JJJJJJJJ	9	GGGGG.GG.	JJJJJJJJJ	8	G..GGG.G	JJJJJJJJ	10	.G...GGGGG	FFJJJJJAJJ
-Chromosome3	143854979	T	0	*	*	1	.	J	3	G..	JFJ	1	G	W	0	*	*
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-Chromosome3	150725011	A	2	C.	JJ	1	C	J	5	..GC.	JJJJJ	3	.C.	JJJ	1	.	J
-Chromosome3	150773290	A	3	,g,	JJF	0	*	*	2	,g	JJ	0	*	*	1	,	J
-Chromosome3	150785567	A	0	*	*	1	.	F	1	G	J	2	T.	sJ	0	*	*
-Chromosome3	150859685	T	7	A.AA...	JJJAAJJ	7	...A...	JJJJJJJ	18	.A...A...A.....A..	JJJJFJsJJJAJJFJJ<F	1	.	A	18	A......AA.......AA	FJ<JJJA7A<JJJJJJFF
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-Chromosome3	151149064	T	0	*	*	1	.	J	0	*	*	1	C	J	1	.-1C	J
-Chromosome3	151346289	G	5	a,aaa	AJJJJ	7	,,a,a,a	JJJAJJJ	4	a,aa	JF<<	5	.aa,a	cJJJF	5	,,,,a	F<JJJ
-Chromosome3	151492866	C	0	*	*	1	.	F	0	*	*	1	.-1A	J	1	.-1A	J
-Chromosome3	151668392	G	3	.A.	JJF	4	..A.	JJJJ	1	.	J	0	*	*	0	*	*
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-Chromosome3	152445326	A	2	g,	JJ	4	.,gg	sJJF	3	,,,	JFJ	3	.,g	RFJ	6	..Gg,,	sskJJJ
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-Chromosome3	154337928	T	0	*	*	0	*	*	2	..	so	3	..A	eks	2	.G	ss
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-Chromosome3	155950791	A	0	*	*	1	.	J	2	.-2CG.-2CG	FJ	1	.-2CG	J	0	*	*
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-Chromosome3	156123384	G	6	aaaaaa	JJ<JJJ	7	aa,,aaa	J<JJ<JA	7	,,a,,,a	JJ<JJJF	3	,aa	JAJ	8	aa,aaaaa	FAJJJJJJ
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-Chromosome3	156681514	T	0	*	*	1	.-19TTTGCACATACTCAATGAC	C	1	.	o	1	.-19TTTGCACATACTCAATGAC	C	0	*	*
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-Chromosome3	157453957	C	0	*	*	2	.a	jJ	3	AA.	sss	0	*	*	1	G	s
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-Chromosome3	157545861	G	0	*	*	0	*	*	2	c,	JJ	1	,	J	2	c,	FJ
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-Chromosome3	157717282	T	1	,-5tttac	5	1	,-5tttac	5	1	,	J	0	*	*	0	*	*
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-Chromosome3	157908047	A	3	..+1T.+1T	J@@	0	*	*	0	*	*	2	.+1T,	FJ	2	.+1T.+1T	<@
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-Chromosome3	169554260	T	2	,,	JJ	0	*	*	1	a	F	0	*	*	3	,,a	JJ<
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-Chromosome3	169775321	A	0	*	*	1	.	J	1	.-5CCCCT	F	0	*	*	1	.-5CCCCT	A
-Chromosome3	169793497	A	3	gg,	JJJ	1	,	J	2	,g	JJ	1	g	J	3	t,,	7JJ
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-Chromosome3	235319646	C	1	.-7CTTCTGT	J	0	*	*	1	.-7CTTCTGT	I	0	*	*	1	.-7CTTCTGT	5
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-Chromosome3	238083906	G	2	,-2ca,	JJ	1	,-2ca	J	1	,-2ca	A	1	,	J	2	,-2ca,-2ca	JJ
-Chromosome3	238094389	G	1	,-3gct	B	1	.-6GCTGCT	[	1	^],	B	0	*	*	0	*	*
-Chromosome3	238094555	A	0	*	*	3	..T	JJJ	1	.	J	2	TT	JJ	0	*	*
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-Chromosome3	238166011	A	1	.	F	1	C	F	3	C.C	JFF	4	CC..	FFFF	2	.C	FF
-Chromosome3	238166061	A	1	.	F	1	.-3GTT	I	3	...-2GT	`JJ	4	.-1G.-1G..	<7FJ	1	.-2GT	J
-Chromosome3	238166100	C	1	.	s	1	A	s	3	A.A	sse	4	AA..	eosJ	2	.A	oo
-Chromosome3	238166109	C	1	.	o	1	A	j	3	..A	sso	4	AA..	9osJ	2	.A	ss
-Chromosome3	238166115	A	1	.	M	1	G	s	3	..G	ssj	4	GG..	\ssF	2	.G	js
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-Chromosome3	238322664	T	1	,-6ccgccg	F	0	*	*	1	.-3CCG	`	0	*	*	1	.	F
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-Chromosome3	238384583	T	0	*	*	2	C,	s<	1	.	s	1	C	s	0	*	*
-Chromosome3	238434878	C	0	*	*	2	.-4ATAT.-2AT	JJ	1	.-4ATAT	F	3	..-4ATAT.	sJJ	5	,....	sJJFJ
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-Chromosome3	238442812	T	12	Ggg,gggggggg	sJJFJFJJJFJJ	4	g,gg	JJJJ	10	ggggg,gggg	JJAJJJJJJJ	2	gg	JJ	10	ggg,gggggg	JJJFJJJJJJ
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-Chromosome3	239655471	G	0	*	*	1	,	J	4	a,,.	BJJs	0	*	*	1	a	J
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-Chromosome3	255512698	T	2	,,	JA	1	c	J	2	,c	JJ	0	*	*	0	*	*
-Chromosome3	255512758	A	2	,g	JJ	0	*	*	1	g	J	0	*	*	1	,	J
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-Chromosome3	255805376	C	1	,	J	0	*	*	0	*	*	1	t	J	2	,t	JJ
-Chromosome3	255855626	T	2	CC	j7	1	.	e	0	*	*	2	.C	Js	0	*	*
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-Chromosome3	256118592	T	1	.-5CCACA	J	0	*	*	1	.-5CCACA	<	0	*	*	1	.-5CCACA	F
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-Chromosome3	256155199	G	11	,,,,,,,,,,,	JJJJJJJJJJJ	11	a,,,,,,a,,,	JJJJJJJJJFJ	15	t,,,,,,,,,,,,,,	JJFJJJJJJJJJJJJ	15	,,,,,,,,,,a,,,,	AFJJJJJJJJFJJJJ	16	,,,,,,,,,a,,,,,,	JJJJJJJJJJJJJJJJ
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-Chromosome3	256246181	G	2	a,	JJ	1	a	J	0	*	*	0	*	*	2	,,	FJ
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-Chromosome3	256539802	T	1	,-1g	H	0	*	*	0	*	*	1	,-1g	H	1	,-1g	H
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-Chromosome3	341345500	G	0	*	*	1	A	s	0	*	*	2	TT	JJ	3	TTa	SSJ
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-Chromosome3	341346059	G	2	.+1C,+1c	99	0	*	*	0	*	*	2	.+1C,+1c	98	6	.+1C.+1C.+1C,+1c,+1c,+1c	999999
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-Chromosome3	345423805	T	1	,-2tg	<	0	*	*	1	,-2tg	<	0	*	*	1	,-2tg	<
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-Chromosome3	346452403	A	2	.-1T.-1T	JJ	1	.-1T	J	1	.-1T	J	0	*	*	0	*	*
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-Chromosome3	346550905	G	2	,-8cagagaat,	JJ	1	,-8cagagaat	J	0	*	*	1	,-8cagagaat	J	1	,-8cagagaat	;
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-Chromosome3	346905001	C	2	,T	Js	5	.TTTT	sssss	4	TTT.	Vose	20	T.TT.TT..TT..T.tttTT	ssssVss``sssosjJsJss	3	T.,	ess
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-Chromosome3	353013281	G	1	a	J	0	*	*	2	,,	JF	0	*	*	3	a,,	7JJ
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-Chromosome3	353026733	A	0	*	*	2	gg	JF	3	g,,	FJJ	2	,,	JJ	2	,g	JJ
-Chromosome3	353104702	G	5	..TT.	77JJF	6	.T.T..	FJJ7JJ	6	...T..	JJJJsJ	6	......	FJJJJs	6	..T.T.	JAJJJJ
-Chromosome3	353104794	G	7	.,,,,,,	sFJJJJJ	6	..,a,,	WsJJAF	7	.T,c,,,	ssJJJJF	7	..,a,,,	ssAJAJJ	7	.,-1c,,,,,	sJJ7J7J
-Chromosome3	353105915	G	0	*	*	1	.	s	2	.A	oo	1	A	k	0	*	*
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-Chromosome3	353105985	G	0	*	*	1	.	s	2	.A	os	1	A	`	0	*	*
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-Chromosome3	353435959	A	5	GGGG.	JJJJ7	1	G	J	7	GG.GG..	JJFJJJA	7	.G...G.	JJJFJJJ	4	G...	JJJJ
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-Chromosome3	353526253	T	0	*	*	1	A	J	1	.	F	0	*	*	3	..A	FAJ
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-Chromosome3	353855791	G	2	t,	Jo	0	*	*	2	,t	F7	0	*	*	1	,	F
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-Chromosome3	353928106	T	0	*	*	0	*	*	2	,,	JJ	1	C	Z	5	,cccc	FJJJF
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-Chromosome3	355923695	G	1	.-7TTTCAAC	J	1	,-7tttcaac	J	0	*	*	1	.-7TTTCAAC	<	0	*	*
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-Chromosome3	360175858	A	1	,	J	1	.-8GTGATAGT	6	1	.-8GTGATAGT	6	0	*	*	1	.-8GTGATAGT	6
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-Chromosome3	360249603	C	34	,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,	JJAJJJJJJJJAJFJJJJJJJJJJJJ<JAJJJAJ	32	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJFJJJAJJJJAJJJ<JJJAJJAJJJJF	33	,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,	FJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJ<	23	,,,,,,,,t,,,,,,,,,,,,,,	JJJJJFFJJJJJJJJAJJAJJJJ	58	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,t,,,,,,,,,,,,t,,,,,,,,,,	JA7JJJJJFFJJJJJJFJJJJJAJFJJFJJJJJJJJJAFJJJJJJJJFJJJJJJJJJF
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-Chromosome3	365368538	A	2	c,	JJ	1	,	F	1	G	H	0	*	*	0	*	*
-Chromosome3	365472326	T	1	,-1g	=	0	*	*	0	*	*	1	,-1g	=	1	,-1g	=
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-Chromosome3	372196116	C	4	t,t,	JJJJ	1	T	s	0	*	*	0	*	*	1	.	W
-Chromosome3	372197118	C	1	.-1G	J	0	*	*	2	.-1G.	JJ	0	*	*	1	.	J
-Chromosome3	372197189	C	1	A	J	1	g	J	2	AG	JJ	0	*	*	1	.	J
-Chromosome3	372245474	C	2	.A	JJ	0	*	*	1	A	<	2	..	ss	0	*	*
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-Chromosome3	372299528	C	0	*	*	2	,-10atgcgggtct,	8F	0	*	*	1	,-10atgcgggtct	8	1	,	F
-Chromosome3	372420013	T	0	*	*	2	,a	JA	2	a,	JJ	0	*	*	2	,,	JJ
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-Chromosome3	372693035	C	1	.	J	0	*	*	0	*	*	2	TT	J7	3	.TT	JJs
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-Chromosome3	374367972	A	3	gg,	JJF	0	*	*	1	,	J	0	*	*	1	g	F
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-Chromosome3	374476468	T	2	,,	JA	0	*	*	0	*	*	1	g	J	3	g,g	JFJ
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-Chromosome3	374901285	A	1	,-8tccaccat	9	1	,-8tccaccat	9	0	*	*	1	.-8TCCACCAT	Q	0	*	*
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-Chromosome3	374910460	T	2	.-3TAC.-3TAC	77	0	*	*	3	.-3TAC..	7J<	1	.-3TAC	7	0	*	*
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-Chromosome3	375957782	C	10	T.........	AJJJJJJJJJ	6	.....T	AJJJJJ	13	T..........T.	JJF7JJJJJJJJJ	5	...T.	JFJFA	7	......T	JFAJJJJ
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-Chromosome3	376553155	T	1	C	J	0	*	*	0	*	*	1	.	s	3	C,,	sJJ
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-Chromosome3	377968837	T	2	C.	JJ	2	CC	Jo	0	*	*	1	.	F	0	*	*
-Chromosome3	377968862	A	2	G.	JJ	2	GG	es	0	*	*	1	.	F	0	*	*
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-Chromosome3	406153856	A	1	,	J	0	*	*	2	Cc	JJ	2	.c	eJ	0	*	*
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-Chromosome3	406291251	A	0	*	*	0	*	*	1	.-4GATC	:	1	.-4GATC	:	1	.-4GATC	:
-Chromosome3	406291365	A	0	*	*	0	*	*	1	,	J	1	,-14gtacactgtcatag	;	1	,-14gtacactgtcatag	;
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-Chromosome3	406367168	A	0	*	*	1	.-2CC	p	0	*	*	1	.	J	2	.-2CC.-2CC	gU
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-Chromosome3	406999006	G	0	*	*	2	a,	JJ	2	a.	JF	1	a	J	1	,	A
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-Chromosome4	15930131	C	0	*	*	1	,	J	1	t	J	0	*	*	2	,t	JJ
-Chromosome4	15930134	G	0	*	*	1	,	J	1	t	<	0	*	*	2	,t	JJ
-Chromosome4	15965368	T	30	.CC...........................	FJJJJJJJJJJJJJJJJJJJJJJJJJJJJF	54	...........................C..........................	JJJJJJJJJJJJJJJJFJJJJJJJJJJJAJJJJJJJAJJJFJJJJJJJJJJJJJ	91	..........................C.............C......................C..C........................	JJJJJJJFJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJFJJJJJF<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJ7JJJJAJJJJJ	80	........................C.......................................................	JJJJJJJFJJJFFJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ>>	107	..............................................................CC...........................................	JJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJ7JJJJJJJJJJJFJJJJJJJJJJAJJJJJJJJJJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ
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-Chromosome4	17934573	T	3	GG.	JoF	2	G.	Js	1	G	F	0	*	*	0	*	*
-Chromosome4	17969885	G	0	*	*	1	.	J	1	C	J	1	a	s	2	.C	JJ
-Chromosome4	18048075	T	0	*	*	1	.	J	0	*	*	2	C.	JA	1	C	J
-Chromosome4	18180074	A	1	c	F	1	,	J	0	*	*	0	*	*	2	t,	JJ
-Chromosome4	18245463	T	2	C^L.	JA	1	C	F	0	*	*	0	*	*	3	CC^L.	JJA
-Chromosome4	18245520	A	2	G.	JJ	1	.	J	0	*	*	0	*	*	3	GG.	JJJ
-Chromosome4	18245781	A	2	g,	JJ	1	,	F	0	*	*	0	*	*	3	,gg	JFJ
-Chromosome4	18246815	C	0	*	*	1	,	J	0	*	*	3	T..	sss	2	TT	os
-Chromosome4	18261318	G	0	*	*	2	.A	FJ	4	A...	<FJJ	0	*	*	1	.	J
-Chromosome4	18261568	A	0	*	*	3	ttt	AAJ	4	tt,t	7<JF	0	*	*	3	ccc	JJA
-Chromosome4	18393169	G	1	,	J	2	,T	Js	0	*	*	0	*	*	1	A	j
-Chromosome4	18454703	C	2	.A	JJ	0	*	*	2	AA	FF	0	*	*	1	.	o
-Chromosome4	18454750	G	2	.A	Js	0	*	*	2	AA	JJ	0	*	*	1	.	s
-Chromosome4	18548741	T	0	*	*	0	*	*	2	.C	JA	2	C.	JF	1	.	<
-Chromosome4	18548786	C	0	*	*	0	*	*	2	TT	sW	2	T.	se	1	.	o
-Chromosome4	18548880	C	0	*	*	0	*	*	2	..	se	2	.T	sV	1	T	o
-Chromosome4	18552344	T	6	CCCC.C	AJJJJJ	1	.	J	0	*	*	0	*	*	1	C	J
-Chromosome4	18582402	T	0	*	*	0	*	*	1	.-1C	F	1	.	\	2	.-1C.-1C	JJ
-Chromosome4	18582433	A	0	*	*	0	*	*	1	.-1T	J	1	,-1t	J	2	.-1T.-1T	JJ
-Chromosome4	18635796	C	3	...	JJJ	9	..T..T...	JJFJFJJJJ	13	....T......T.	JJJJFJJJJJsFJ	10	...TT.....	JJJJJJJsJJ	11	..T.....T..	JFJJJAJ`JJJ
-Chromosome4	18635820	G	3	...	sRs	9	..A......	sMssjssss	13	....A......A.	sssososssoses	10	...A......	sossssssoo	11	........A..	osssssoRsso
-Chromosome4	18635826	G	3	.AA	sfs	9	.A.......	sVoossoss	13	A.AA........A	ooskssossssss	10	......AA..	s`sssssVss	11	......AA...	sssssookoss
-Chromosome4	18635949	A	3	,gg	FFF	9	,g,,,,,,,	FFFFFFFFF	12	,,gg,,,,,,g,	FFFFFFFFFAFF	8	,g,,,g,,	FFFFFFFF	10	,,g,,,,,,,	FFFFFFFFFF
-Chromosome4	18649124	C	0	*	*	3	T..	JFJ	3	T..	7JJ	0	*	*	2	.T	JJ
-Chromosome4	18649129	C	0	*	*	3	.T.	JFJ	3	...	FJJ	0	*	*	2	T.	JJ
-Chromosome4	18649212	C	0	*	*	3	.A.	JJF	3	...	<JJ	0	*	*	2	A.	FJ
-Chromosome4	18649503	C	0	*	*	3	,ta	J<J	2	,,	JJ	0	*	*	2	t,	<J
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-Chromosome4	18649571	A	0	*	*	3	c,,	?<F	2	c,	GJ	0	*	*	2	,c	FG
-Chromosome4	18651644	G	3	.A.	JJJ	1	A	J	2	A.	JJ	0	*	*	4	....	JJJJ
-Chromosome4	18656703	A	0	*	*	2	g,	FJ	2	c.	FJ	1	.	s	0	*	*
-Chromosome4	18929638	G	0	*	*	2	,a	JJ	1	,	J	1	a	J	0	*	*
-Chromosome4	18929640	A	0	*	*	2	,g	JJ	1	,	J	1	g	J	0	*	*
-Chromosome4	18943746	G	0	*	*	1	T	J	2	.T	JJ	1	.	J	0	*	*
-Chromosome4	18943748	T	0	*	*	1	C	J	2	.C	JJ	1	.	J	0	*	*
-Chromosome4	18943836	A	0	*	*	1	.	J	2	G.	JJ	2	G.	JJ	0	*	*
-Chromosome4	18943850	C	0	*	*	1	.	J	2	A.	JJ	2	A.	JJ	0	*	*
-Chromosome4	18943864	G	0	*	*	1	.	J	2	A.	JJ	2	A.	JJ	0	*	*
-Chromosome4	18947149	A	1	g	A	1	.	J	0	*	*	2	.g	jA	0	*	*
-Chromosome4	18947151	T	1	c	J	1	.	J	0	*	*	2	.c	aJ	0	*	*
-Chromosome4	19166974	A	1	.-3GAT	;	0	*	*	1	.	J	0	*	*	1	.-3GAT	;
-Chromosome4	19509852	T	0	*	*	2	..	ss	1	.-1G	J	1	,-1g	J	0	*	*
-Chromosome4	19690327	A	0	*	*	1	C	J	2	GC	JJ	0	*	*	2	.G	JJ
-Chromosome4	19690343	C	0	*	*	1	.	F	2	G.	<J	0	*	*	2	.G	JJ
-Chromosome4	19690358	A	1	g	<	1	.	J	2	G.	aJ	0	*	*	2	.G	sj
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-Chromosome4	19724082	A	1	,-2ag	;	0	*	*	0	*	*	2	,-2ag,-2ag	;;	1	,-2ag	;
-Chromosome4	19738728	G	0	*	*	1	A	A	0	*	*	2	A.	Js	1	,	J
-Chromosome4	19738730	C	0	*	*	1	G	<	0	*	*	2	G.	Js	1	,	J
-Chromosome4	19738731	A	0	*	*	1	T	<	0	*	*	2	T.	Js	1	,	J
-Chromosome4	19738738	T	0	*	*	1	.	J	0	*	*	2	.G	J`	1	g	J
-Chromosome4	19794481	G	11	...T,T..A.^T.	ssJJoFFfFJA	14	..T.,.,.AA,,,.	jAJeFsFJ>F7<AA	13	...Tt.AAAA.a.	sooFFJs<6sJAA	32	....,t,,AAA..AA.AAA..Aa,.Aa....^].	RssJeFoAA>UJjsJJsojssAAJ`jFJFnAA	8	..,,,,.A	<AAfFssF
-Chromosome4	19794500	A	13	...G,.....G..	AsJJjJWeJJJJo	19	..G.,g.,...g,g,.,..	AAJRfJsAJsoFA7JFVsJ	18	...Gg.....G,....G.	jooJ<JsFAsJJ<JFsss	40	.G...,gg,,,..............,,..,.....G.G.G	6AssJsJ<os9o```ssJJojosoA<seoVJJeJAVssJF	8	.,,,..G.	JRVssJsV
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-Chromosome4	19794534	A	18	..G,c.....,G...,.c	oAJoA<AWF:AJFss<o7	21	..G.,,.g...g,.,...,.G	AF`>sJsAJsCAJJosJJFnJ	16	..gG...G,....,.G	soFF`JosJJAsssJJ	46	G...,gg,,g..............,,..,...g.G.GG.G,g,.GG	As`JsAFes:eeHs\j7JokssooF`oso7F7Joo<sJsosA<oJk	9	,,,,..G..	jWJssFsVs
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-Chromosome4	31936052	T	0	*	*	0	*	*	2	C.	ss	2	.C	Vs	1	C	a
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-Chromosome4	32033503	A	1	.	J	0	*	*	2	.T	JJ	0	*	*	2	T.	JJ
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-Chromosome4	32033599	A	1	,	F	0	*	*	2	,g	JJ	0	*	*	1	g	F
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-Chromosome4	32988810	T	2	,,	JJ	0	*	*	0	*	*	2	,c	FJ	1	c	J
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-Chromosome4	66394049	G	1	.	J	1	T	s	0	*	*	0	*	*	3	T.T	JJF
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-Chromosome4	66394134	A	1	.	J	1	C	V	0	*	*	0	*	*	3	G.G	JJJ
-Chromosome4	66662106	T	2	.C	FJ	1	.	J	0	*	*	1	.-1C	s	0	*	*
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-Chromosome4	66663972	T	0	*	*	2	,.	Js	4	..CC	AJJJ	1	C	s	0	*	*
-Chromosome4	66664003	G	0	*	*	1	A	o	3	,,a	F77	1	.	s	0	*	*
-Chromosome4	66664017	C	0	*	*	1	A	s	4	,,aa	JFAJ	1	.	s	0	*	*
-Chromosome4	66664027	A	0	*	*	1	.-1T	f	3	,-1t,-1t,-1t	JJJ	1	.-1T	s	0	*	*
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-Chromosome4	66664070	C	0	*	*	1	t	J	4	,,tt	JJ7J	1	.	o	0	*	*
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-Chromosome4	66734981	C	1	.	o	3	.$t,	EJJ	0	*	*	3	t..	Jso	0	*	*
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-Chromosome4	66870740	G	0	*	*	0	*	*	1	A	s	1	.	s	2	A.	os
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-Chromosome4	66870781	A	0	*	*	0	*	*	1	G	s	1	.	s	2	G.	ss
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-Chromosome4	66907963	G	0	*	*	3	A..	JJJ	0	*	*	1	.	A	1	A	J
-Chromosome4	66908028	C	0	*	*	3	T..	Jsk	0	*	*	1	.	s	1	T	s
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-Chromosome4	71511971	A	3	G.G	JJJ	0	*	*	3	..G	JJF	2	GG	JJ	3	.GG	JJJ
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-Chromosome4	71889078	C	0	*	*	0	*	*	1	.	s	6	.G....	oojsss	6	T.....	ssosos
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-Chromosome4	72975841	G	0	*	*	0	*	*	3	..a	joJ	5	A,,,.	oJJJs	2	,,	JJ
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-Chromosome4	73139150	C	1	.+1A	J	0	*	*	2	.+1A.+1A	JJ	2	.+1A.+1A	AJ	0	*	*
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-Chromosome4	73218937	C	3	,-2aa,,	5JJ	0	*	*	0	*	*	1	,-2aa	5	1	,	J
-Chromosome4	73379391	C	3	,-1a,,	JJF	0	*	*	1	,	J	0	*	*	1	*	D
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-Chromosome4	73760159	T	0	*	*	0	*	*	4	.A..	JJJs	1	A	J	1	.	J
-Chromosome4	73771024	A	0	*	*	2	.-1T.-1T	JJ	1	.-1T	J	1	.-1T	J	0	*	*
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-Chromosome4	74216066	G	5	.T...	FFsfJ	0	*	*	4	..C.	JsJJ	1	.	s	1	T	7
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-Chromosome4	74216196	T	5	,,ccc	JJJJJ	0	*	*	3	c,,	AJF	0	*	*	1	c	J
-Chromosome4	74216197	C	5	,,ttt	JJAJJ	0	*	*	3	t,,	AJF	0	*	*	1	t	<
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-Chromosome4	75124366	C	3	,,,	JJJ	0	*	*	1	a	J	0	*	*	2	,a	JJ
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-Chromosome4	75219758	C	0	*	*	2	.-7ATCAGGA.	5J	1	.	>	1	.-7ATCAGGA	5	0	*	*
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-Chromosome4	75220160	C	0	*	*	2	,-5agagg,	JJ	1	,-5agagg	J	0	*	*	1	,-5agagg	<
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-Chromosome4	78218400	G	1	.+2CA	F	0	*	*	2	.+2CA.+2CA	5J	2	.+2CA.+2CA	rJ	0	*	*
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-Chromosome4	78365119	A	1	.	F	1	T	J	3	.TT	fsF	0	*	*	3	.,T	FsJ
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-Chromosome4	78379820	T	1	.-1C	I	4	.-1C.-1C.-1C.-1C	IIII	0	*	*	2	.-1C.-1C	II	5	.-1C.-1C.-1C.-1C.-1C	IIII7
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-Chromosome4	78546477	G	5	a,,,a	JJJJF	0	*	*	0	*	*	3	a,,	JJJ	4	,,,,	FJ<J
-Chromosome4	78546538	T	5	c,,,c	JJJJJ	0	*	*	0	*	*	3	c,,	JFJ	4	,,,,	FJFJ
-Chromosome4	78546572	G	5	a,,,a	JJJFJ	0	*	*	0	*	*	3	a,,	JJJ	4	,,,,	FJJJ
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-Chromosome4	78631111	A	3	.+1T.+1T.+1T	JJJ	3	.+1T.+1T.+1T	JJJ	2	.+1T.+1T	JJ	3	.+1T.+1T.+1T	FJJ	7	.+1T.+1T.+1T.+1T.+1T.+1T.+1T	F9JJJJJ
-Chromosome4	78634267	T	0	*	*	0	*	*	1	c	s	5	,,,c,	`ssss	4	,,,,	jsso
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-Chromosome4	78695339	A	2	,-2at,-2at	<<	1	.-2AT	W	0	*	*	3	,-2at,,	<Js	1	,-2at	<
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-Chromosome4	79151338	A	2	g,	JJ	2	,,	JF	1	g	J	0	*	*	0	*	*
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-Chromosome4	79478677	T	2	ca	FJ	0	*	*	0	*	*	1	,	J	1	a	J
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-Chromosome4	80037412	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.A	JJ
-Chromosome4	80171533	T	10	..cc,cc,,c	ssJJJJFAFJ	6	,,cc,,	JJJAAF	4	cc,,	AJFF	5	.c,cc	sJJJF	15	Ccc,cc,,,c,,c,,	eJJAJJJJ7JJJJFJ
-Chromosome4	80197569	A	1	.-1T	F	0	*	*	1	.-1T	J	0	*	*	1	.-1T	J
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-Chromosome4	83193123	C	1	,	F	0	*	*	0	*	*	1	,-6cttctt	=	3	,-3ctt,,	AJA
-Chromosome4	83337313	G	1	,-14gggattaaatcccc	6	0	*	*	1	,-14gggattaaatcccc	6	0	*	*	1	,-14gggattaaatcccc	6
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-Chromosome4	83774804	C	2	aa	JJ	1	,	J	5	,,a,,	JJJJF	4	.,ga	sJFF	5	,,,a,	AJJ7J
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-Chromosome4	83784299	T	2	A.	JJ	0	*	*	0	*	*	2	A.	A7	1	A	J
-Chromosome4	83795790	T	2	,,	7J	2	,c	JJ	0	*	*	3	c,,	FJJ	2	c,	JJ
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-Chromosome4	115771416	T	3	...	EEE	0	*	*	0	*	*	3	..A	njJ	1	A	J
-Chromosome4	115771514	T	1	,-1c	J	0	*	*	0	*	*	1	,	J	1	,-1c	J
-Chromosome4	115775755	T	1	.-2AA	J	1	.+1A	F	1	.-2AA	J	2	,-2aa.	sJ	2	..-2AA	JJ
-Chromosome4	115827814	C	3	.+6TATAGG..	AJJ	0	*	*	0	*	*	5	....+6TATAGG.	JJJJJ	2	..	JJ
-Chromosome4	115827848	T	3	A..	jJJ	0	*	*	0	*	*	5	...A.	JJJjJ	2	..	JJ
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-Chromosome4	115828004	C	2	t,	F<	0	*	*	0	*	*	4	ttt,	JJJF	2	,,	JF
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-Chromosome4	115828031	C	2	t,	JJ	0	*	*	0	*	*	4	,,t,	JFJJ	1	,	J
-Chromosome4	115829674	A	0	*	*	0	*	*	1	.	<	1	G	J	2	.G	JJ
-Chromosome4	115885266	G	2	A.	JJ	3	.AA	JJJ	3	...	JJJ	2	.A	FJ	0	*	*
-Chromosome4	115885332	C	2	T.	JA	3	.TT	Jss	3	...	JJJ	2	.T	JJ	0	*	*
-Chromosome4	115895462	A	2	G.	J7	0	*	*	1	.	<	1	G	J	3	.G.	JJJ
-Chromosome4	116018354	G	2	,+1t,+1t	JJ	1	,+1t	A	1	*	=	2	,+1t,+1t	JJ	0	*	*
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-Chromosome4	116239526	G	1	.	J	1	.-11GATTTTGTTTT	I	0	*	*	1	.-11GATTTTGTTTT	I	0	*	*
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-Chromosome4	116573180	C	2	,t	JJ	0	*	*	1	t	J	0	*	*	1	,	J
-Chromosome4	116603618	C	1	.-1T	I	1	.-1T	F	1	.-1T	I	0	*	*	0	*	*
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-Chromosome4	116847514	C	0	*	*	0	*	*	1	A	s	1	,	J	2	t,	JJ
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-Chromosome4	117047539	C	3	g,,	JJF	0	*	*	2	,,	JF	0	*	*	2	t,	JJ
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-Chromosome4	117739403	C	1	.	J	2	.-7CGCCGAG.	^J	0	*	*	0	*	*	1	.-7CGCCGAG	7
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-Chromosome4	117858434	G	1	,	J	2	,a	JJ	0	*	*	0	*	*	2	c.	7s
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-Chromosome4	120513867	T	2	..	JJ	2	.C	JJ	7	CC.....	JJJJJFA	4	C.CC	JJJJ	7	C..CCC.	JAJFJ7J
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-Chromosome4	121301063	C	0	*	*	0	*	*	2	,t	Js	1	t	A	1	.	s
-Chromosome4	121376305	G	2	c,	JJ	0	*	*	1	a	J	2	,,	JJ	0	*	*
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-Chromosome4	121441089	C	2	T.	GJ	0	*	*	1	.	s	1	T	A	0	*	*
-Chromosome4	121470996	C	1	,-1t	F	1	a	<	2	,,	JJ	0	*	*	0	*	*
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-Chromosome4	121657688	A	1	.-1C	o	0	*	*	1	,-1c	J	1	.-1C	A	0	*	*
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-Chromosome4	121981088	T	2	..	JJ	0	*	*	0	*	*	4	...c	fsjA	1	c	J
-Chromosome4	122062775	C	0	*	*	3	,,,	JJJ	1	t	J	2	.,-3att	VF	0	*	*
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-Chromosome4	122453962	G	0	*	*	0	*	*	2	.T	oo	1	.	s	1	T	j
-Chromosome4	122453983	C	0	*	*	0	*	*	2	T.	ss	2	.T	As	1	.	j
-Chromosome4	122454010	C	0	*	*	0	*	*	2	.-2AG.	oo	1	.-2AG	s	1	.	s
-Chromosome4	122454017	G	0	*	*	0	*	*	2	.C	oj	2	C.	As	1	C	o
-Chromosome4	122454020	A	0	*	*	0	*	*	2	*.	=k	2	.*	<=	1	.	s
-Chromosome4	122454021	A	0	*	*	0	*	*	2	*.	=s	1	*	=	1	.	`
-Chromosome4	122454022	T	0	*	*	0	*	*	2	*A	=o	2	A*	7=	1	A	V
-Chromosome4	122454055	A	0	*	*	0	*	*	2	T,	oJ	1	.	s	1	T	j
-Chromosome4	122454070	G	0	*	*	0	*	*	2	,-1t,-1t	JJ	1	.-1T	s	1	,-1t	<
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-Chromosome4	122543447	C	1	.	J	1	T	J	2	.T	Ae	0	*	*	0	*	*
-Chromosome4	122558182	C	1	T	F	0	*	*	2	.T	sJ	1	.	s	0	*	*
-Chromosome4	122658581	C	1	.-1T	F	0	*	*	0	*	*	1	.-1T	J	1	.-1T	s
-Chromosome4	122701953	G	0	*	*	1	A	A	0	*	*	2	..	mJ	2	.A	JF
-Chromosome4	122701959	T	0	*	*	1	.	J	0	*	*	2	G.	oJ	2	.G	JJ
-Chromosome4	122701989	T	0	*	*	1	.	o	0	*	*	2	GG	so	2	.G	s\
-Chromosome4	122702104	G	0	*	*	1	,	<	0	*	*	2	,$t	FF	2	,a	JA
-Chromosome4	122705506	T	0	*	*	1	,	J	2	*c	JA	0	*	*	3	,,a	JJJ
-Chromosome4	122705555	G	0	*	*	1	a	J	2	,,	JJ	0	*	*	3	,t,	JJJ
-Chromosome4	122734956	A	1	.-12TTGCTCCGGTGT	H	0	*	*	0	*	*	1	.-12TTGCTCCGGTGT	H	1	.-12TTGCTCCGGTGT	H
-Chromosome4	122794637	C	0	*	*	0	*	*	1	.	s	1	T	s	2	T.	os
-Chromosome4	122794667	C	0	*	*	0	*	*	1	a	F	1	.+1T	s	2	.+1T.	ss
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-Chromosome4	148419589	C	10	,,,,,a,,,,	JJJJFAFJJF	9	,,,,,a,,,	FJJJJJFJJ	14	,,,,aa,,,,,,,a	JJJJJJFJJFJJJJ	6	,,,,,,	FJJJJJ	9	,,a,,,,,,	JJJJJFJJJ
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-Chromosome4	148735967	A	0	*	*	2	G.	jJ	1	G	s	0	*	*	2	G^I.	sA
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-Chromosome4	148827484	T	0	*	*	0	*	*	1	.	J	2	CA	so	1	C	s
-Chromosome4	148943640	G	1	.-1A	o	1	.-1A	s	0	*	*	1	.-1A	s	0	*	*
-Chromosome4	148970230	G	1	,-1t	J	2	,,-1t	JJ	1	,-1t	J	1	,	J	0	*	*
-Chromosome4	148970549	T	0	*	*	3	.A.	JJJ	2	..	JJ	2	C.	JJ	0	*	*
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-Chromosome4	148970610	T	0	*	*	3	.C.	FJs	2	..	oJ	2	C.	J<	0	*	*
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-Chromosome4	151017580	G	1	.-3GAT	7	4	,,,t	FFJA	1	.	s	0	*	*	0	*	*
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-Chromosome4	153202690	C	2	T.	JJ	1	.	J	3	.T.	JJJ	0	*	*	2	.T	AJ
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-Chromosome4	153594949	C	1	.-3CAT	;	1	.	J	0	*	*	1	.-3CAT	;	0	*	*
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-Chromosome4	154537207	T	2	GG	JJ	1	A	J	1	C	J	5	AGGGG	JJJFJ	3	AGA	JJJ
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-Chromosome4	155713399	T	3	,,+1c,+1c	AJJ	5	,+1c,+1c,+1c,+1c,+1c	J7FFJ	2	,+1c,+1c	JF	5	,,+1c,+1c,+1c,+1c	FJJJJ	2	,+1c,+1c	JF
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-Chromosome4	155806383	G	0	*	*	0	*	*	2	.,	s<	4	.,,a	jJJJ	2	.a	sA
-Chromosome4	156197524	C	1	G	J	0	*	*	2	,G	Js	1	.	A	0	*	*
-Chromosome4	156197526	A	1	G	A	0	*	*	2	,G	Fs	1	.	<	0	*	*
-Chromosome4	156550699	A	3	t,t	FJJ	2	,,	J7	0	*	*	0	*	*	3	ttt	JJF
-Chromosome4	156675234	C	0	*	*	2	.T	JJ	1	.	J	0	*	*	1	T	J
-Chromosome4	156675291	T	0	*	*	2	.C	JJ	1	.	J	0	*	*	1	C	J
-Chromosome4	156675317	T	0	*	*	2	.C	JJ	1	.	k	0	*	*	1	C	J
-Chromosome4	156986089	C	0	*	*	0	*	*	2	..	JJ	2	T.	JJ	1	T	J
-Chromosome4	156986324	C	0	*	*	0	*	*	2	,-1t,-1t	JJ	1	,	<	1	,-1t	J
-Chromosome4	157199568	T	1	C	F	0	*	*	2	C.	JJ	1	.	J	0	*	*
-Chromosome4	157199624	G	1	A	J	0	*	*	2	.A	J<	1	.	F	0	*	*
-Chromosome4	157199626	C	1	T	F	0	*	*	2	TA	JF	1	.	J	0	*	*
-Chromosome4	157286442	T	2	.c	sJ	0	*	*	1	c	<	1	.	s	0	*	*
-Chromosome4	157409252	C	2	..	JJ	0	*	*	3	..T	JJJ	0	*	*	3	..T	JJJ
-Chromosome4	157409264	C	2	..	JF	0	*	*	3	..A	JJJ	0	*	*	3	..A	JJJ
-Chromosome4	157409343	T	2	.A	JJ	0	*	*	3	...	JJA	0	*	*	4	G...	FJJJ
-Chromosome4	157445444	C	1	.-2AT	J	0	*	*	1	.-2AT	J	0	*	*	2	.-2AT.-2AT	JJ
-Chromosome4	157636167	G	3	.-8TTACAAAC..	JJJ	1	.-8TTACAAAC	J	1	.	J	0	*	*	0	*	*
-Chromosome4	157636442	G	3	,,,	JJJ	2	C,	sJ	0	*	*	0	*	*	1	c	J
-Chromosome4	158016155	G	1	A	s	0	*	*	1	*	s	2	A.	sk	5	.AAAA	ssoso
-Chromosome4	158016172	C	1	.	s	0	*	*	1	T	s	2	T.	ss	5	.TTT.	sssss
-Chromosome4	158016227	G	1	,	J	0	*	*	1	a	J	2	a,	JJ	5	,,aaa	JJJJJ
-Chromosome4	158039358	G	2	..	ss	0	*	*	2	A.	ss	1	A	o	0	*	*
-Chromosome4	158076290	A	1	t	J	0	*	*	1	c	J	0	*	*	2	,t	JJ
-Chromosome4	158076312	C	1	t	J	0	*	*	1	,	J	0	*	*	3	,,t	FJJ
-Chromosome4	158100799	G	2	t,	JJ	0	*	*	1	,	J	0	*	*	1	t	7
-Chromosome4	158156345	T	1	C	s	0	*	*	0	*	*	1	.	o	3	.C.	s`J
-Chromosome4	158156360	A	1	g	J	0	*	*	0	*	*	1	.	s	3	.gg	JJJ
-Chromosome4	158156555	T	0	*	*	1	.	s	0	*	*	1	C	A	3	..c	AJJ
-Chromosome4	158156590	A	0	*	*	1	.	s	0	*	*	1	G	\	3	.g,	sJ:
-Chromosome4	158158526	C	1	T	J	0	*	*	2	T.	JF	0	*	*	1	.	J
-Chromosome4	158158658	G	1	t	J	0	*	*	3	tt,	7JJ	0	*	*	1	,	J
-Chromosome4	158158697	G	1	a	<	0	*	*	3	aa,	FJJ	0	*	*	1	,	J
-Chromosome4	158364986	T	0	*	*	1	.	J	0	*	*	3	.GG	sss	1	G	V
-Chromosome4	158365023	G	0	*	*	1	.	a	0	*	*	3	ATT	sss	1	A	o
-Chromosome4	158365043	C	0	*	*	1	.	s	0	*	*	3	.TT	sss	1	T	s
-Chromosome4	158365078	G	0	*	*	1	,	F	0	*	*	3	c,c	JJJ	1	c	F
-Chromosome4	158365079	G	0	*	*	1	,	J	0	*	*	3	c,c	JJJ	1	c	F
-Chromosome4	158365088	T	0	*	*	1	,	J	0	*	*	3	a,a	JJJ	1	a	J
-Chromosome4	158430777	C	0	*	*	2	,-11ttggtggtgtt.	Hs	1	g	J	1	T	s	1	,	F
-Chromosome4	158488145	C	2	,,	7J	0	*	*	3	,g,	FJA	0	*	*	2	,t	JF
-Chromosome4	158509716	G	1	c	J	1	.	<	0	*	*	2	T.	AJ	0	*	*
-Chromosome4	158509753	C	1	t	A	1	.	A	0	*	*	2	t.	Aa	0	*	*
-Chromosome4	158509758	G	1	t	>	1	.	7	0	*	*	2	a.	As	0	*	*
-Chromosome4	158626003	G	0	*	*	1	.-2CA	`	1	.-2CA	F	0	*	*	1	,-2ca	F
-Chromosome4	158626039	A	0	*	*	1	.-8GGCCTCCG	f	1	.-8GGCCTCCG	s	0	*	*	1	,-8ggcctccg	J
-Chromosome4	158753279	T	2	.$c	jJ	0	*	*	1	C	s	0	*	*	2	,c	JJ
-Chromosome4	158753385	A	2	,g	JJ	0	*	*	1	,	J	0	*	*	1	g	<
-Chromosome4	158870692	A	1	,-1g	J	0	*	*	1	,-1g	J	0	*	*	1	,-1g	J
-Chromosome4	158953675	C	0	*	*	1	.	J	2	.G	JJ	0	*	*	4	..GG	JJFJ
-Chromosome4	158953736	G	0	*	*	1	.	J	2	.T	FJ	0	*	*	4	..TT	<JJs
-Chromosome4	158953756	G	0	*	*	1	.	`	2	.A	eJ	0	*	*	3	..A	jjs
-Chromosome4	159011544	G	0	*	*	2	,t	JF	0	*	*	1	t	F	1	,	F
-Chromosome4	159011583	G	0	*	*	1	a	<	0	*	*	1	,	<	3	,Aa	JJJ
-Chromosome4	159011615	C	0	*	*	1	g	J	0	*	*	1	,	J	2	,a	JF
-Chromosome4	159164964	C	1	,	J	0	*	*	0	*	*	1	a	J	3	,a,	JJJ
-Chromosome4	159237554	T	1	,	E	0	*	*	1	,-3aga	J	1	.-3AGA	s	1	,-3aga	J
-Chromosome4	159287233	T	0	*	*	1	,	J	0	*	*	1	c	<	2	,c	JJ
-Chromosome4	159313643	G	0	*	*	1	.-14TCCTCTAGCTCCTT	5	1	.-14TCCTCTAGCTCCTT	5	1	.	J	0	*	*
-Chromosome4	159337186	A	44	CCCCCCCCCCCCCCCCCCCC........................	JJJJJFJJJJJJJJJJFJJJFFFFFFFFFFFFFFFFFFFFFFFF	84	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC...........................................	JJJJJJJJJJJJJJJJJ<JJJAJFJJJ7JJJJJJJJJJJFJFFFFFFFFFFFFFFFFFFFFFFFFAAFFAFFAFFF<FFAFFFA	188	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC.....................................................................................................	JJJJJJJJJFJJJJJJJJJJJJJJJJFJFJJJJJJJJJJJ<JJJJ7JJAFJFJJJJJ<F<JFJJFJFJFJJJFJJJ7JJJJJJJJJJFFFFAFFFFFFFFFFFFAFFFFFFFFFFFAFFFFFFFFFF?FFFFFFFFFFFFFFFFFFFFFFFFFFFAFFFAFFFFFFFFFFFFFFFAFFFFFFFFFFFA	111	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC..................................................	JJ<JJJJJJJJF7JJJFFJJJJJJJJAJJJAFFJJJJJJJJJJJJFJJFJJJJJJJJJJJ=FFFFFFAFFFFFFFAFAAFFFFFFAFFFAFFFFFAFFFFAFAFFFA<FFF	137	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC...............................................................	JJJJJJFJJJJJJJJJJJJJJFJJJJFJJFJJJFJJJJJJJJJAFFFJJJJJJJJJJJFJJJJJJFJJJJJJJJFFFFFFFFFFFFFFFFFFFFFFFAFFFFFAFFFFFFFFFFFFFFFAFFFFFFFFFFFAFFFFA
-Chromosome4	159337291	T	47	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA,-6tggcta.-6TGGCTA.-6TGGCTA	CCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCC>	90	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA	CCCCCCCCCCCCCCCC>CCCC9C>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>C>CCCC>CCCCC	201	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..-6TGGCTA	CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCC>CCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCC>CCCsCCCCCCCCCCCCCCCC>CCCCCCCCCC>CCCCCCCCCCCCCCCCC>CCCC>CCCCECCCCCCCCCCCCoC	123	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA..	CC9CCCCCC>CGCCCCCCCCCCCCC>>CCCCCCCCCCCCCCCCC>CC>CCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCC>CCCCCCC>CCCCCCCCCCCCCCCC>CCCCCCCCss	141	.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.-6TGGCTA.	CCCCCC>CCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCRCCCCCCCCC>CCCCCC@C>CCCCCCCCCCCCCCCCCCCCCC>CCCCCCCCCCCCCCCCCCCCCCCCCCCs
-Chromosome4	159348438	C	11	,,t.,.t.t..	JJJJJAJAJJJ	12	tt,.,..T,.t.	JJJJJoJeJJsJ	10	t,,..T.,..	JJFJJJsJFF	29	...t,T.A,.t,,..,.t.,,...,t,..	FJoJJssJJJJJJJoJJJJAJJFJJjsJF	8	.,,,..tt	FJJJJJJD
-Chromosome4	159348548	T	5	.c..,	F7JJJ	8	..,.c...	ssJJsJ7J	8	....,..,	JJFsJJJJ	17	,.c.,,c,...,,.,..	FJJsAJJJFJ`JssJJF	5	.,c,,	JJJJJ
-Chromosome4	159348718	G	5	,cc,c	JJJFJ	4	,c,c	JJJJ	5	,,cc,	JJJJJ	10	cc,,ctcccc	AJJJJJJJJF	3	,,,	JJF
-Chromosome4	159351674	G	0	*	*	1	,-1t	J	2	,$,-1t	AJ	2	,-1t,-1t	JJ	0	*	*
-Chromosome4	159354749	A	36	...............................+1G....,	aossssfkjosfsosMssasMssjsj`fssLksWs>	64	...............................................................+1G.	Mo`ssssaossssossFssjsRssseVssojojssojVsoso\jsssssjkeooosssjsRkjs	117	.........................................................+1G.....................+1G.......................................+1G	okssooasoksWs\oVso\kjsssssossssssosjssjRooeVRfk`Mss<9`osSssjsojoRoososRssssssQVssssoVooHooesMjsosssssssesjsVsossVReoj	83	.................................+1G.................................................,	j\osoosCooao``osfssoMsoaeosesojshRoR`ssVsssoossssoWsossss9osooossssjosksosoasoJsssA	93	.........................+1G....................................................................	sjos\oo\oR9jsoVPosfsssssisVVsf`ooskssosesVssssosRRsossojsojssjsosVoosjsaoass\MsskseskjssossMs
-Chromosome4	159354792	A	32	.,t,,,,,,,,,,,,,,,,,,,,,,,,t,,,,	sJJJJJFFJ<JJFAAJJA<FJJAFFFFJJ7JJ	64	T..t,,,,,,,,,t,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,	`ooJJ<JJFJJFFJJJJ<<JJJJJFFJAJJJJFJFAFJAAAJJF7JJJ<FAFJ7JFFJFFJAJJ	112	.T..,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,t,,,,,,t,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,,,,,,,,,,,,,,,,,,,tt,,,,	oossAJJ<JJJJAJJJFJJJAJ7JF7JJAJJFJ<AJJJFFJJJJ7JJJFA7AFAJJ7AJJJJJF<FFFJJ7JFFJFJ7JFJJJFFJJJ<JA7FJJ7JJJJJJAJ<JAJJJJA	79	...........,,,,,,,,,,,,,,,t,,,,,,,,t,,,t,,,,,,t,,,,,,,,t,,,,,,,,,,t,,t,,t,,,,,,	asjsHossossFJAJFJJFF7JJAFJFFJ7JJAJJJAAAFAJ<7AJ7JJFFJJJFJJFJJJJAJ7FFJFJJFJJFJJ7A	85	.,,,,,,,,,,,,,,,,,,,,t,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,tt,,	sJJJFJJJJ<7JJJFFJJJJJFJJJJFFJJ<JJ<7FFFJJJFJAAJJJJFFJJJJJAFFAAJAJFFFA<JJJJJFJFFFFJJF7A
-Chromosome4	159355873	C	0	*	*	1	.	s	2	Gg	XJ	4	gg,G	JJJM	0	*	*
-Chromosome4	159359085	C	1	.	J	0	*	*	2	T.	ss	6	.TT...	sJoJss	3	..T	sJj
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-Chromosome4	207215581	A	29	..T..TT..TT.T..,....,,.,,,..,	7JVoVJ7WjJJaJR`:JssM:AVAJoVsA	17	..T.t...,T,,,..,.	VooVsVso:sAoAsVsj	24	.T.TT,.,,,,..,,,,.T..,t.	sso>:js5A`>\J7JAJCsVJs7J	34	...T.T.T..T...T....,...,.....,....	soses>jsssAseH<sos<sMjJsjsoseJossF	23	...T.TT.TT...T,,.,.,T,,	7esAjsso`:sssFjass<7JFA
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-Chromosome4	207215586	A	25	GGGGGGGGGGGGggGGGG.,gggGG	Je<sJ`7JJsJeAJ`oseAFJJo`s	17	GGGGGGgGGggg.GggG	os\ososoofJFejAlV	25	GGGGGGGGgG,gGgGggg.GG.,gG	soJjJ7sJsAAsjJJJJJVsoJsAJ	35	GGGGGGGGGGGGGGGGGgGGGgGGG.,ggG.Gg.G	sssssssssoo\`JjsssjjJss`soA6JsJf@sF	23	G.GGGGGGGGGGGggG,GgGgg.	nVsssjAR`ossJJsoAAFJFAA
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-Chromosome4	207215588	A	25	T.T...T..T..tt...t.ttt,TT	JRJs7MA<FsFRVJosVA`JJJoos	17	T..TT.,T.ttt.t.t.	eVoosjsso:JJaJRls	24	TTT...Tt..,T,.ttt..TG,,.	seJoVs7A7<sRJJJJJjssJs7J	34	TT.TTTT.T..T..T.tT.T,..t..t.t..,,.	ssos`ossRssJjssAAooAsoo>Ms>sJsa6@s	23	.....T......,ttt.,+1t.t.,t	\ssssARAsssFsJAAss7AJFJ
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-Chromosome4	207215595	A	24	T.......T..t,...t.ttt,..	JRF`<VJJfJV:Foj`AaAJAess	22	T....,T.t,t..,T.......	`oRkfjsoA>J`eJ<eJJAJJA	28	T........t..,T,.ttG..Gt,....	ssFsJV7s<AF<k`JFAAsssssJJFAJ	35	TT.T......T....T.tT.T,.....tt..,g..	ssssAsss>oHRJoos<AkWJsssssoAFsoJJJJ	20	..........,t.,.t.tG.	sAjso6os`77AoVF>J>AA
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-Chromosome4	207215599	C	24	..........G,,.....,,,,..	JfoF`AFJaFVoFojsVosJsojs	21	.....,..,,,T,.,..G...	osasVsoskJosssJJRJJJJ	27	.....T.,..,.,.t,,,....,,...	joAJjM7sJAosJJAsssossssFJJJ	37	.......G...G.......,...g.GA..,..,,...	Vsoso`osVsoo`\JsssFssjJA:sssoJssJA<JJ	22	............,,.,.,.,,.	7ssosj<j6ossJssA<eJFeJ
-Chromosome4	207215601	C	24	............,.....,,,,..	FR<oFeFJFeFasjosjjAJAAos	22	.T....,..,,..,...G.GG.	`ekksesssoJsVF`JJAJJA<	28	.........,..,.,.,,....,,.GGG	skJo<jAjFs7FooJJAA`ssosAJJAJ	37	............G.....,...,...G.,..,t,.G.	jssssjjs`sokfJsssFsjjJsssssoJssJA><JJ	22	............,,.,..,,.G	7ssssoFjfossJssoAJFAJA
-Chromosome4	207215602	T	25	............,,.....,,,,..	FV7oAkJJJoJRRAsssoosJooss	21	......,..,,c.,.......	sjajsRsosjJAos`oJJJJA	26	.......,..,.,.,,,G..Gg,...	ooFjesFjAJoVJJssfkssssAJAJ	38	.............,$.C....$,...,.....,..,....	ossssjJsVsA`fAo<sssFsfsJsssssjJsfJA7JJ	21	...........,c.,.,.,,.	ssoss`\sss7JAso7jJ7oJ
-Chromosome4	207215606	C	23	...T...T...,..,t,,ttt..	F`7`FVJJoFVkjVsAJAAAAos	22	..T..Ta..,,,.T,...T.TT	Vs9ksVooo`JAseJsJJAJJJ	26	......,..,.gTt,,A.,.t,.TT.	ss7oAAoAFsoJJAAAss>ssJJFAJ	36	............T...,.t..,.....,GT.,.TTT	osossjsjAsosoJssssAeJsssoskJsFoJlJJF	21	.G...A..t,,,.,.,.,,,.	sAso`sAAAJoAooAfJ<AAJ
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-Chromosome4	207215858	C	6	,,GG.,	JAJJe7	15	,...,...*.,,,,,-10tatagctcat	Js\sJ77j;sFJFB?	8	,.....,.	JOsJYJAo	19	.*,.-10TATAGCTCATG,,,.,.,,,.A..,	o;J=AJJJ`JsJJJE9sss	7	*.,,,.,	9sJsJsJ
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-Chromosome4	211553551	C	1	A	a	1	T	R	1	.	s	0	*	*	2	A.	Xs
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-Chromosome4	211728285	G	5	A.A.A	J@JJJ	3	AA.	JJ@	2	A.	JJ	5	AA.TA	JJJ<J	5	.AAA.	JFJJJ
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-Chromosome4	211732722	C	0	*	*	1	.-1T	r	1	.	s	0	*	*	1	.-1T	s
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-Chromosome4	212060778	T	2	.C	FJ	0	*	*	1	C	J	0	*	*	2	.C	FF
-Chromosome4	212060796	C	2	.T	JJ	0	*	*	1	T	J	0	*	*	2	.T	JJ
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-Chromosome4	212061111	T	2	a,	JJ	0	*	*	1	,	J	0	*	*	2	a,	JJ
-Chromosome4	212061162	C	2	,a	JJ	0	*	*	1	a	J	0	*	*	2	,a	JJ
-Chromosome4	212064086	G	3	A.A	JsJ	1	.	<	0	*	*	0	*	*	1	A	F
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-Chromosome4	212242857	A	3	g,,	JJ7	1	,	J	0	*	*	0	*	*	3	,g.	JJJ
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-Chromosome4	212873404	C	3	.+1G.,+1g	=s=	0	*	*	1	.	J	0	*	*	2	.+1G,+1g	==
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-Chromosome4	215280089	C	1	t	J	1	.	o	0	*	*	2	T,	aJ	0	*	*
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-Chromosome4	215596681	C	1	.-2AT	E	0	*	*	1	.-2AT	E	1	.-2AT	E	0	*	*
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-Chromosome4	221189182	T	1	.-3AAA	J	1	.-1A	<	0	*	*	1	.-1A	s	0	*	*
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-Chromosome4	221290171	G	0	*	*	2	,a	FJ	1	.	s	0	*	*	1	a	F
-Chromosome4	221290189	G	0	*	*	2	,a	AJ	1	.	s	0	*	*	1	a	J
-Chromosome4	221309604	T	1	G	J	0	*	*	2	C.	JJ	0	*	*	1	.	J
-Chromosome4	221309676	A	1	.	F	0	*	*	3	.G.	JJA	0	*	*	1	G	J
-Chromosome4	221309868	A	1	c	J	0	*	*	3	,c,	JAF	0	*	*	1	,	J
-Chromosome4	221387686	C	0	*	*	2	,-1g,$	FF	2	,-1g,-1g	AF	2	,-1g,-1g	FF	0	*	*
-Chromosome4	221415240	G	2	.A	JA	0	*	*	1	A	J	1	.	J	0	*	*
-Chromosome4	221415247	G	2	.C	JJ	0	*	*	1	C	J	1	.	J	0	*	*
-Chromosome4	221415273	C	2	.A	JF	0	*	*	1	A	J	1	.	J	0	*	*
-Chromosome4	221415298	A	2	.G	JJ	0	*	*	1	G	<	1	.	J	0	*	*
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-Chromosome4	221415325	G	2	.A	JF	0	*	*	1	A	F	1	.	J	0	*	*
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-Chromosome4	221463828	C	3	,-1t,-1t,	A<F	0	*	*	1	,	J	1	,-1t	F	0	*	*
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-Chromosome4	221751050	C	0	*	*	1	.-3TTT	:	3	.-2TT.,-2tt	JsF	0	*	*	1	.-2TT	F
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-Chromosome4	221964088	G	0	*	*	2	,-1a,-1a	JJ	0	*	*	1	,+1a	J	1	,-1a	J
-Chromosome4	222021725	C	1	,-2ag	J	0	*	*	0	*	*	1	,-2ag	J	1	.-2AG	s
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-Chromosome4	222040386	C	2	,-4gccg,	Is	1	.-4GCCG	I	1	.	s	0	*	*	0	*	*
-Chromosome4	222049181	T	1	c	F	0	*	*	3	CC,	fsJ	0	*	*	1	.	s
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-Chromosome4	222351039	C	2	.T	JJ	0	*	*	1	T	J	0	*	*	3	...	=JJ
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-Chromosome4	222569347	C	3	T..	JJJ	2	..	JJ	2	T.	JJ	0	*	*	2	TA	J<
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-Chromosome4	250499510	A	102	.$,.,,+2at,+2at.+2AT.+2AT,+2at,+2at,+2at..+2AT,+2at..+2AT.+2AT,,+2at,,+2at,+2at,,+2at,+2at,,,,,,,,,,,,,,,,+2at,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	P7MJ77GM777`77sMMJ7F77J77<JFJFJAJ7JJJJAJ6FJJJJJFJJFJJFJFF777777777777777777777777677776777777777777777	57	..+2AT..+2AT.+2AT..+2AT,+2at.+2AT.+2AT.+2AT,+2at,,,+2at,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	MGoMMoM7MMM7<J7JJJJJJJJAFJFJJJJJJJA7777767776777777777777	81	,$..+2AT,+2at,+2at,+2at,,+2at,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2cg,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,	:sM776J7FJAJJFJFJAJ<JJ777JJ7JJ<JJJFJJJ77777767777?776777777777777777777777777777F	85	.,+2at.+2AT.+2AT..,+2at,.+2AT,,,,,,,,,,,,,,,,,,,,,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,,+2at,+2at,+2at,+2at,,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	R7MMsf7J7FAJJFJAJJJ7JJJAJFJ7JJ76777777777777777777777676767777777A6776=77777777767777	56	.$.$..+2AT.+2AT,,.+2AT,,,+2at,+2at,,,,,,,,,,,,,+2at,+2at,+2ct,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at,+2at	cc\MMJJ7JJ777FJJJJ<7JJFJ77;67777777767777677777777777777
-Chromosome4	250499867	C	1	,-1g	7	0	*	*	0	*	*	1	,-1g	A	1	,-1g	J
-Chromosome4	250502357	G	107	,-5ggtga..-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA....-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA......-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA...-5GGTGA	IJ5JJ5555J5555J555J555J55JJ5J555J5555FJ55555J5555555J5J555JJ555AA5JAJ5JF5555555A555F5555J5J`JJJ555J5J5J5JA5	87	.,-5ggtga,-5ggtga.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA...-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA..-5GGTGA....-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA......	J?I55J57555F5JE5J55J55<5J576<5J5AJ5F5JHJ5J555F55555JJJJ555F5JJ555JJJJ5J5J7J5JII55JsJJJJ	122	,-5ggtga,,-5ggtga..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA...-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA	GsIJ55J5J5J555555555J555A5555F5J5J5F555J5J55555555J555JJ5JJ5JJI555J5J55J5F5JIJ555J55JJ5555J555JJ555J555555J5J5J5JJJ555F555	160	,-5ggtga,,-5ggtga,-5ggtga..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA....-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.......-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA....-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.....-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA...-5GGTGA	I`IIF5J575JJ555555J5J5J5J5G55555J555J5FJ5FJJ557F55JJ555FJJ5J5J55555F5FJJsjJ565555JH555JJ555JF5F55J5J5JsJ55F5JJ55JJ555J55J5F55F55<V5555JJ555J5575555JJFJ5F55J5JJ5	135	.-5GGTGA.....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA.-5GGTGA...-5GGTGA..-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA....-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA..-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA.-5GGTGA.-5GGTGA...-5GGTGA.-5GGTGA	5JJAJ555555J5555s5555J5F555F5J5F5555J5J555HJ555J55555JJ5F5555<555J55F5555555555JJ5J55JJ:J5J55555755oJJ5555JJJ55555JH55J55I555JJ5555JJ55
-Chromosome4	250502654	C	99	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJ7JAJJJ<7AFJFFAFJFFA<JJAAFJ<FJFJFFAFJJFJFJJAAJ<7A7AJFJ<<JFJFJAAAAJFF7JAF<JAJJAFJFAJJJ<<F7JFJJFA	68	,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	FAJAJFF<JFJFFJJJ<FJJFJ<JFJJ7<JJAJJAJ<J<<FJAFJ<<FJFJJJJFAJJFAJJ<77JJ7	103	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	FJJJFJ<JJJJ<JAA<FJFJJ<J<FFF7<JAFJFJFJJJFJJF<7AJJFAJJJJFFAJJ7JFAJJJJ7F<JJJF7JJFAAF7FFJJJFFJ7FFFJJ<FFJAJJ	145	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,^I,	JJJJJJFFJJAF<FJJJJAJFFAJJFAFJAF<JJ<JJJFAFJJJFJ7<F7JJJ7FFJAJJAJJJJFFJFJFJ<JJJJJJJJJ<7JJJJJA<F<JJJFF7FJAAJJ<JAJJJJ7JAFJFJJFJJAFJJAJFJJJJJFF<AAFJJFA	126	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJJAF7JAA7JJJAFFJA<FJJJJJFJJF7JJAFA77FJJ7FJJJAA<FFJJFFFFJFJ7FFAJF7AJJF7JAJJAJJ7J<JJFAAJFFFJFJFF7<7JF<FFF<FFJFAFFJA7AA<JJ<JJFJ
-Chromosome4	250505579	T	126	..+3AAA.+2AA.+2AA.+2AA...+3AAA..+4AAAA..+4AAAA.+2AA.+2AA.+3AAA.+3AAA...+3AAA.+3AAA.+3AAA.+3AAA.....+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+1A.+3AAA.+3AAA.+1A.+2AA.....+2AA.+2AA..+2AA.+3AAA..+3AAA..+3AAA..+3AAA..+3AAA.+2AA.+3AAA.+2AA.+4AAAA.+2AA...+1A.+2AA..+3AAA.+1A.+5AAAAA.+3AAA...+3AAA..+1A.+3AAA...-1A.+4AAAA.+1A.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+1A..+3AAA.+3AAA...+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+3AAA...+3AAA.+2AA.+3AAA.+3AAA.+3AAA.+4AAAA..+3AAA.+4AAAA..+3AAA.+3AAA.+3AAA..+1A.+3AAA.+3AAA...+3AAA..+2AA..+3AAA..+3AAA.+3AAA..	JJFJJJJJJFJJJJJFJJSJJJJJJJJJJJJJJJJ<JAJJJJJeAJFF7JJJJ=FJF<JJJJJJJJAFJJJJJJJAJFFJJJJJJJJAJJJFJJJDJJJJFJJJJJJFJJJo7FsA=FFJJJJJJF	80	...+3AAA.+3AAA.+3AAA..+3AAA...+3AAA...+3AAA.+3AAA...+3AAA.+3AAA.+4AAAA.+3AAA.+3AAA.+3AAA.+3AAA*.+3AAA..+3AAA.+3AAA.+4AAAA.+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+2AA.+3AAA..-1A.+3AAA.+2AA..+3AAA.+3AAA...+3AAA..+3AAA.+2AA...+1A.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA....+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+1A.+3AAA..+3AAA..+3AAA..+2AA.+3AAA.+3AAA.+3AAA..+2AA	JJJJJJFJJJFssEsJJJFJAJJcJJ=JFJjJJAJJJJJJJFFJFJsJJJjoJJJJJ<JFJJJJJFJJJsJJJ7JJJJJo	117	.+2AA.+4AAAA.+1A.+3AAA.+3AAA.+3AAA...+2AA..+1A.-1A.+2AA.+3AAA.+3AAA...+3AAA.+2AA.+3AAA.+3AAA..+1A.+3AAA...+4AAAA.+3AAA.+3AAA.+3AAA..+1A.+3AAA....+3AAA..+3AAA.+4AAAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA.+3AAA.+4AAAA.+3AAA..+3AAA..+2AA.+2AA.+4AAAA..+3AAA.+3AAA..+3AAA...-1A...+3AAA.+3AAA.+4AAAA.+3AAA..+2AA.+3AAA....+3AAA.+3AAA.-1A.+3AAA..+3AAA..+3AAA..+2AA...+2AA.+4AAAA..+4AAAA..+2AA...+2AA.+3AAA.+4AAAA.+3AAA..+3AAA...+1A.+3AAA.+2AA.+1A.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+4AAAA.+3AAA.	FJJJFJ=AJ7FJJJJJJJJJJJJJAJJJFJJJJAJJF7FJJJJJJAJJJJJJ7JFJJ7JJJJJJJJJJJFAFJJFJJJJFJ<7F7JJJJJJA<JA<FJJ7FJFJrJJJ7sJjJJJJA	124	.+3AAA.+3AAA.+2AA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA.+3AAA.+2AA..+3AAA.+2AA..+4AAAA.+3AAA.+3AAA.+3AAA.-1A.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+2AA.+3AAA.+2AA.+2AA..+2AA.+2AA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA..+3AAA..+3AAA...+3AAA..+3AAA.+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+3AAA.+3AAA.+1A...+3AAA.+3AAA.+1A.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+4AAAA.+3AAA.+3AAA.+2AA.+3AAA.+3AAA...+4AAAA....+3AAA..+3AAA..+1A..+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA..+4AAAA.+3AAA.+2AA..+4AAAA..+3AAA.+3AAA.+4AAAA.+3AAA.+2AA.+4AAAA.-1A.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA	JJJJJAJFJJJJJJJJFJJFJJAJJJJJJJJJJFJ=7JJoJJAJJFJAJAJA<JJJJJJJJJJJJJJeoJoFJJJJ`JJJJJ<JFAFJFJJJJJJJJJJJJ=J7JJJJFJeJsJjJJJJJJJJV	118	.+3AAA.+3AAA...+1A.+4AAAA.+3AAA..+1A.+2AA..+3AAA.+3AAA...+3AAA.+4AAAA.+3AAA.+3AAA.-1A.+3AAA.+4AAAA.+3AAA.+3AAA.+1A.+3AAA.+3AAA.+3AAA...+3AAA..+2AA.+1A.+3AAA.+3AAA..+3AAA....+4AAAA.+3AAA.+3AAA.+3AAA.+2AA.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+2AA.+3AAA.+3AAA..+1A.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+4AAAA.+3AAA.-1A.+3AAA.+3AAA..+3AAA.+3AAA.+3AAA.+3AAA..+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+4AAAA.+3AAA..+3AAA..+3AAA.+2AA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA.+3AAA..+3AAA..+1A.+3AAA.+3AAA.+3AAA.+3AAA.+5AAAAA..+3AAA.+3AAA.+1A.+1A.+2AA.+3AAA.+3AAA.+3AAA.+2AA..-1A.+1A	JJJ<JJJFJJAFJAAJJJJJAJJJoJJJFFJF7JJJJJFoJJFJJ=J7AJJJJJ7JFGJJFJJJJJFJJJJAJJJJFJJJJJeJJJJJAJJJJFJJFJJJJJJJJJJ7sjJJJJJJJs
-Chromosome4	250506355	C	8	.Tt,T.Tt	JJFJJJJ7	22	tT,tT.TT...TT.,,tTTtTT	8JFFFJJJJFJJJJ<AJJFFJ<	18	t,tT,ttt,TTttTTtt,	F<AJ<FAJJJJJFJJ7J<	24	tt,T..TtTTTT,,,TtTTTT.tT	JJJAJJJJJJJJAJFJJJJJJJJJ	3	t,T	JFJ
-Chromosome4	250528358	C	0	*	*	2	a,	JJ	0	*	*	1	,	J	1	A	A
-Chromosome4	250541741	C	1	T	J	0	*	*	0	*	*	1	.	J	2	T.	JJ
-Chromosome4	250557028	A	0	*	*	1	C	J	1	.	7	0	*	*	2	.C	JF
-Chromosome4	250651526	A	1	.	J	0	*	*	0	*	*	1	T	J	3	T..	JFJ
-Chromosome4	250651530	A	1	.	s	0	*	*	0	*	*	1	G	J	3	GG.	JJJ
-Chromosome4	250651601	A	1	.	s	0	*	*	0	*	*	1	T	J	3	T.G	JJJ
-Chromosome4	250715884	T	1	,-2ga	7	0	*	*	1	,-2ga	J	1	,-2ga	J	1	,	F
-Chromosome4	250789233	C	1	.	J	2	T.	JJ	3	.TT	J7J	0	*	*	0	*	*
-Chromosome4	250797051	C	1	T	J	0	*	*	0	*	*	1	.	J	2	T.	JJ
-Chromosome4	250797127	C	1	.	J	0	*	*	0	*	*	1	A	J	2	.A	FJ
-Chromosome4	251092433	A	1	t	J	0	*	*	3	,,,	JJJ	0	*	*	3	.+1T,+1t,+1t	sJJ
-Chromosome4	251763052	C	1	.-2TT	J	0	*	*	1	.-2TT	J	1	.-1T	J	0	*	*
-Chromosome4	251763131	G	1	.	J	0	*	*	1	.-1A	s	1	.-1A	A	0	*	*
-Chromosome4	251763180	C	1	*	?	0	*	*	2	.,-2aa	JJ	1	.-2AA	j	0	*	*
-Chromosome4	251792341	T	0	*	*	1	A	s	1	,	J	2	,a	JJ	0	*	*
-Chromosome4	251856758	C	2	.T	JJ	0	*	*	1	.	J	0	*	*	2	TT	JJ
-Chromosome4	251961969	G	2	..	JJ	0	*	*	3	.AA	FJJ	0	*	*	2	.A	JJ
-Chromosome4	252183081	G	0	*	*	0	*	*	1	C	J	1	.	J	3	CC.	FJJ
-Chromosome4	252215909	A	1	G	J	0	*	*	3	..G	JJJ	1	.	J	0	*	*
-Chromosome4	252437908	C	1	g	J	0	*	*	1	.	j	0	*	*	2	.G	JJ
-Chromosome4	252560159	G	0	*	*	1	,	J	0	*	*	2	.a	se	1	A	s
-Chromosome4	252560172	C	0	*	*	1	,	J	0	*	*	2	.,-1a	ss	1	.-1A	j
-Chromosome4	252560198	A	0	*	*	1	,	J	0	*	*	2	.,-1t	sa	1	.-1T	s
-Chromosome4	252560254	T	0	*	*	1	,	J	0	*	*	2	,c	Jo	1	c	J
-Chromosome4	252565945	A	0	*	*	1	.-1C	J	3	..-1C.-1C	J<J	1	.	s	1	T	s
-Chromosome4	252584694	C	0	*	*	2	G.	JJ	1	.	J	0	*	*	1	G	J
-Chromosome4	252603565	G	1	.-8TCCCATAC	@	0	*	*	1	,-8tcccatac	@	1	.	J	0	*	*
-Chromosome4	252611085	A	1	.	F	2	..-1T	JJ	0	*	*	0	*	*	2	..-1T	7A
-Chromosome4	252611111	C	1	.+1T	J	2	.+1T.	sJ	0	*	*	0	*	*	2	.+1T.	FJ
-Chromosome4	252611250	C	1	a	J	1	,	J	0	*	*	0	*	*	2	a,	7F
-Chromosome4	252611300	G	1	c	J	1	,	J	0	*	*	0	*	*	2	c,	FJ
-Chromosome4	252912680	C	0	*	*	1	.	J	1	.-2AT	B	1	*	H	0	*	*
-Chromosome4	252918181	C	0	*	*	1	.	\	1	.-4ACGT	I	2	.-4ACGT,-4acgt	55	0	*	*
-Chromosome4	252935111	T	0	*	*	0	*	*	1	.-4TAAA	I	1	*	A	1	.-4TAAA	5
-Chromosome4	252974390	T	2	^K.^].	AA	1	.-1A	E	0	*	*	0	*	*	2	C^].	FA
-Chromosome4	252974403	A	2	.G	JJ	1	.	J	0	*	*	0	*	*	2	G.	JJ
-Chromosome4	252974411	T	2	.C	FJ	1	.	J	0	*	*	0	*	*	2	C.	JJ
-Chromosome4	252987988	G	0	*	*	3	a,,	JJJ	1	A	j	0	*	*	1	,	H
-Chromosome4	252988075	A	0	*	*	3	,+1t,+1t,	DDF	2	,+1t,+1t	GG	0	*	*	2	,+1t,+1t	JF
-Chromosome4	253279216	C	0	*	*	1	.-1T	A	1	.	J	1	.-2TT	J	0	*	*
-Chromosome4	253350908	C	1	T	J	1	.	J	0	*	*	2	T.	oJ	0	*	*
-Chromosome4	253460249	G	0	*	*	3	..T	AJJ	3	...	JJJ	5	A..A.	7JJ7J	1	A	J
-Chromosome4	253646426	G	1	.-1A	J	1	.-1A	J	1	.-1A	J	0	*	*	0	*	*
-Chromosome4	253704015	G	1	.	J	2	.C	JJ	2	T.	JJ	1	A	J	0	*	*
-Chromosome4	253813616	A	0	*	*	1	,-1t	J	1	,	7	0	*	*	1	,-1t	F
-Chromosome4	253867697	C	0	*	*	1	,-3ttg	J	0	*	*	1	,-3ttg	J	1	,	J
-Chromosome4	253868539	A	0	*	*	0	*	*	1	C	s	2	..	FF	2	G.	JF
-Chromosome4	253934370	A	2	.G	JJ	1	.	F	0	*	*	1	G	J	3	GG.	JJA
-Chromosome4	253934572	G	2	,t	AF	1	,	F	0	*	*	1	t	A	3	t,t	FJJ
-Chromosome4	253948600	A	1	.-2TC	J	0	*	*	1	.-2TC	F	0	*	*	1	.	J
-Chromosome4	254014622	C	1	.-1A	J	1	.-1A	J	1	.-1A	J	0	*	*	0	*	*
-Chromosome4	254054699	C	3	.T.	JJJ	0	*	*	2	..	sA	0	*	*	2	.T	JF
-Chromosome4	254054711	C	3	.GG	F<J	0	*	*	1	.	s	0	*	*	2	GG	J<
-Chromosome4	254054929	A	3	,,g	JJ<	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome4	254055055	T	2	c,	JJ	0	*	*	1	c	J	0	*	*	2	c,	JJ
-Chromosome4	254083580	G	1	.-2AC	<	0	*	*	1	.-2AC	<	1	,	J	0	*	*
-Chromosome4	254091986	A	2	G.	JJ	0	*	*	2	G.	JJ	3	...	JJJ	0	*	*
-Chromosome4	254092146	C	2	t,	FJ	0	*	*	2	t,	JJ	3	,,,	FJJ	0	*	*
-Chromosome4	254105809	T	2	g,	<J	0	*	*	0	*	*	1	G	J	2	,,	J7
-Chromosome4	254105814	T	2	a,	JF	0	*	*	0	*	*	1	C	<	2	,,	JF
-Chromosome4	254105825	G	3	c,c	AAJ	0	*	*	0	*	*	1	C	o	2	,,	J7
-Chromosome4	254146883	G	2	.A	JJ	0	*	*	2	..	JF	1	A	J	0	*	*
-Chromosome4	254306395	T	2	G.	JJ	0	*	*	6	....GG	<AJJJJ	2	..	JJ	5	..C..	JFJJR
-Chromosome4	254306584	A	2	,,	JJ	1	g	A	5	gg,,g	JJJJJ	2	,g	JJ	4	,,gg	JFJ7
-Chromosome4	254380228	T	0	*	*	1	C	J	1	.	J	4	.CCC	JJFJ	0	*	*
-Chromosome4	254380230	G	0	*	*	1	A	J	1	.	J	4	..AA	JJJJ	0	*	*
-Chromosome4	254380333	C	0	*	*	2	T.	os	1	.	J	4	..TT	Assj	0	*	*
-Chromosome4	254452814	G	0	*	*	2	.A	JJ	2	.A	JJ	0	*	*	1	.	J
-Chromosome4	254492733	T	2	,g	JF	4	,,,,	7JAJ	2	g,	AJ	0	*	*	1	c	J
-Chromosome4	254554927	G	0	*	*	0	*	*	1	A	H	2	..	JJ	2	A.	FJ
-Chromosome4	254554933	A	0	*	*	0	*	*	1	G	\	2	..	JJ	2	G.	FJ
-Chromosome4	254555002	G	0	*	*	0	*	*	1	A	a	2	..	ss	2	.A	as
-Chromosome4	254555048	C	0	*	*	0	*	*	1	,	F	2	A,	sJ	2	Ta	sF
-Chromosome4	254977298	A	0	*	*	1	.	J	2	.G	JJ	0	*	*	1	G	J
-Chromosome4	255060964	C	3	,,t	JF<	0	*	*	1	t	J	3	,,,	FJJ	3	tt,	JJF
-Chromosome4	255060979	A	3	,,,	J<J	0	*	*	1	g	J	3	,,g	JJJ	3	,g,	JJF
-Chromosome4	255061066	C	3	,t,	JJF	0	*	*	1	t	J	3	t,,	JJJ	3	a,,	JJF
-Chromosome4	255103688	T	7	,,,,,,g	JJJJJJJ	7	,,,,,,g	AJJJJJ<	14	,,,,,ggg,,,,,g	JJJJJJJJJJJJJJ	5	,,,,,	FJJJF	12	,,,,,g,,,,,,	JJJJJJJJJJJJ
-Chromosome4	255112298	G	1	t	5	0	*	*	4	ttt,	555J	0	*	*	1	,	J
-Chromosome4	255192846	C	0	*	*	1	,-2tg	H	1	.	s	1	.-1T	H	0	*	*
-Chromosome4	255223524	C	1	T	J	0	*	*	0	*	*	2	,T	FJ	1	.$	H
-Chromosome4	255273856	T	0	*	*	2	..-1G	JJ	3	...-1G	JJJ	0	*	*	1	.	J
-Chromosome4	255273939	C	0	*	*	3	T..	JFJ	3	..T	JJJ	1	T	J	1	.	A
-Chromosome4	255273960	T	0	*	*	3	AC.	J\o	3	CC.	``o	1	.	s	1	C	h
-Chromosome4	255274027	C	0	*	*	3	T,,	VJJ	3	t,,	JJJ	1	.	s	1	t	J
-Chromosome4	255274048	A	0	*	*	3	gg,	JJJ	3	g,,	JJJ	1	,	J	1	g	J
-Chromosome4	255274073	G	0	*	*	3	t,,	F<J	3	t,,	JJJ	1	,	J	1	a	J
-Chromosome4	255456540	T	2	C.	JJ	2	..	AF	2	.C	JJ	1	C	J	4	C..C	JAJF
-Chromosome4	255541369	A	2	.g	sJ	0	*	*	1	,	J	2	gg	JF	0	*	*
-Chromosome4	255640019	T	1	.-1C	7	1	.-1C	J	1	.-1C	J	0	*	*	0	*	*
-Chromosome4	255671855	C	1	A	J	0	*	*	0	*	*	1	^].	<	2	A.	JJ
-Chromosome4	255671867	C	1	.-1A	J	0	*	*	0	*	*	1	.	J	2	.-1A.	JJ
-Chromosome4	255672063	T	1	g	F	0	*	*	0	*	*	1	,	J	2	g,	JJ
-Chromosome4	255859011	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
-Chromosome4	255859014	G	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
-Chromosome4	255859061	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
-Chromosome4	255859082	C	0	*	*	1	T	J	1	.	s	0	*	*	2	T.	JJ
-Chromosome4	256067675	A	0	*	*	1	C	J	2	..	AA	3	CC.	JFA	0	*	*
-Chromosome4	256067679	G	0	*	*	1	A	J	2	..	JJ	3	AA.	JJJ	0	*	*
-Chromosome4	256067716	C	0	*	*	1	A	s	2	..	os	3	AA.	sso	0	*	*
-Chromosome4	256067760	A	0	*	*	1	.	s	2	T.	os	3	..T	sos	0	*	*
-Chromosome4	256067782	A	0	*	*	1	C	s	2	..	ss	3	CC.	oss	0	*	*
-Chromosome4	256067795	T	0	*	*	1	.	s	2	A.	ss	3	..G	soj	0	*	*
-Chromosome4	256175856	A	2	c,	JJ	0	*	*	0	*	*	2	c,	JJ	1	c	J
-Chromosome4	256175902	G	2	,,	J7	0	*	*	0	*	*	2	,a	JJ	1	t	J
-Chromosome4	256218376	C	1	.	C	1	.-1A	s	0	*	*	0	*	*	1	.-1A	J
-Chromosome4	256274442	C	4	....	JJ7J	0	*	*	4	...T	JJJJ	2	T.	JJ	0	*	*
-Chromosome4	256341303	G	0	*	*	2	A.	sJ	1	.+1A	s	0	*	*	1	A	F
-Chromosome4	256341479	C	0	*	*	1	,	F	0	*	*	1	a	F	2	A.	Js
-Chromosome4	256403052	T	2	,a	AF	0	*	*	1	a	J	0	*	*	2	,,	JJ
-Chromosome4	256680064	G	0	*	*	1	.-1A	s	1	.-1A	J	0	*	*	1	,-1a	J
-Chromosome4	256765560	T	0	*	*	2	.G	sJ	1	G	J	0	*	*	1	.	J
-Chromosome4	256765580	T	0	*	*	2	.C	sJ	1	C	J	0	*	*	1	.	J
-Chromosome4	256765595	A	0	*	*	2	.T	sJ	1	T	J	0	*	*	1	.	F
-Chromosome4	256968673	C	0	*	*	0	*	*	1	,-2aa	J	1	,-2aa	J	1	,-2aa	J
-Chromosome4	257107110	A	1	.	F	0	*	*	2	G.	JF	0	*	*	2	G.	AF
-Chromosome4	257107601	T	1	c	J	0	*	*	2	,,	J<	0	*	*	2	,a	J<
-Chromosome4	257116935	C	0	*	*	1	,-1t	s	1	,-1t	s	0	*	*	1	,-1t	s
-Chromosome4	257416107	T	0	*	*	1	^].	A	2	C^].	JA	0	*	*	1	C	J
-Chromosome4	257416198	C	0	*	*	1	.	F	2	T.	JJ	0	*	*	1	T	J
-Chromosome4	257416230	T	0	*	*	1	.	J	2	C.	JJ	0	*	*	1	C	J
-Chromosome4	257416283	G	0	*	*	1	^],	E	2	,a	JJ	0	*	*	1	a	J
-Chromosome4	257416287	T	0	*	*	1	,	F	2	,c	JJ	0	*	*	1	c	J
-Chromosome4	257416288	A	0	*	*	1	,	A	2	,g	JJ	0	*	*	1	g	F
-Chromosome4	257416290	C	0	*	*	1	,	J	2	,t	JJ	0	*	*	1	t	J
-Chromosome4	257420903	G	0	*	*	0	*	*	1	.	F	1	T	J	2	.T	FJ
-Chromosome4	257420959	T	0	*	*	0	*	*	1	.	7	1	A	s	2	.A	FJ
-Chromosome4	257432996	A	1	g	J	0	*	*	0	*	*	2	,.	Js	3	g,,	JJJ
-Chromosome4	257433000	G	1	,-1t	J	0	*	*	0	*	*	2	,.-1T	J_	3	,-1t,+3ttt,+3ttt	JJJ
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-Chromosome4	257887629	C	1	.	J	0	*	*	2	T.	JJ	3	T..	FsJ	0	*	*
-Chromosome4	257887638	C	1	.	J	0	*	*	2	.T	JJ	3	..T	JoJ	0	*	*
-Chromosome4	257901252	T	1	.-1G	s	2	..	ss	0	*	*	0	*	*	1	.-1G	k
-Chromosome4	257916537	A	0	*	*	1	.-1T	s	0	*	*	1	,-1t	J	1	.-1T	s
-Chromosome4	258007386	A	4	,g,,	FJJJ	2	,g	AJ	3	,gg	AJJ	0	*	*	2	,g	J<
-Chromosome4	258007404	A	5	g,gg,	JJJJJ	2	,g	JJ	3	,,,	JFA	0	*	*	2	g,	JF
-Chromosome4	258012117	A	1	,	J	2	,g	7J	1	g	F	0	*	*	0	*	*
-Chromosome4	258012160	A	1	,	J	2	,g	JJ	2	g,	JA	1	G	j	0	*	*
-Chromosome4	258128928	A	2	c,	JJ	2	,,	JJ	3	c,c	JJJ	1	c	F	0	*	*
-Chromosome4	258385850	A	2	.G	JF	1	.	J	1	G	J	0	*	*	0	*	*
-Chromosome4	258385876	C	2	..-3GAG	sJ	1	.	R	1	.-3GAG	s	0	*	*	0	*	*
-Chromosome4	258385877	G	2	T*	sI	1	.	V	1	*	q	0	*	*	0	*	*
-Chromosome4	258385878	A	2	.*	sI	1	.	V	1	*	q	0	*	*	0	*	*
-Chromosome4	258385879	G	2	.*	sI	1	.	e	1	*	q	0	*	*	0	*	*
-Chromosome4	258385893	G	2	.C	eA	1	.	j	1	C	s	0	*	*	0	*	*
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-Chromosome4	258387175	G	1	A	J	0	*	*	0	*	*	2	A.	JJ	1	.	F
-Chromosome4	258387183	T	1	.	J	0	*	*	0	*	*	2	.G	JJ	1	G	J
-Chromosome4	258387196	C	1	A	J	0	*	*	0	*	*	2	A.	FJ	1	.	A
-Chromosome4	258387310	T	1	,	J	0	*	*	0	*	*	2	c,	JJ	1	c	J
-Chromosome4	258387333	A	1	g	J	0	*	*	0	*	*	2	,g	JJ	1	,	J
-Chromosome4	258387387	C	1	,	J	0	*	*	0	*	*	2	*,	JJ	1	g	J
-Chromosome4	258613747	C	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,+1a	J
-Chromosome4	258667526	A	1	,	J	0	*	*	1	,-1c	F	1	.-1C	a	0	*	*
-Chromosome4	258682527	C	1	.	J	0	*	*	1	T	J	2	.T	JJ	0	*	*
-Chromosome4	258976164	G	0	*	*	1	,	J	2	,t	AJ	0	*	*	3	a,,	JJJ
-Chromosome4	259026925	T	1	.	J	0	*	*	1	.-3AGA	J	0	*	*	3	.-3AGA..	JJJ
-Chromosome4	259030172	A	0	*	*	2	.g	sF	1	.	s	0	*	*	1	G	J
-Chromosome4	259057209	G	16	...A.......AA...	J<JFJFJFJJJJJFJF	6	......	JJJJJJ	14	.AA...........	JJJJ<JA<AJJJJJ	17	A............A...	JJJJJ<JJJJFFJ<AJJ	21	..........A.......A.A	JJAJJJJJJFJFJF<JJsJAJ
-Chromosome4	259097719	G	0	*	*	2	,T	sJ	0	*	*	1	.	o	4	..T.	JJJJ
-Chromosome4	259097887	T	0	*	*	1	c	7	1	,	7	0	*	*	4	c,cc	JJJF
-Chromosome4	259121127	C	0	*	*	0	*	*	1	T	J	1	.	J	3	.T.	JJJ
-Chromosome4	259189600	A	0	*	*	1	,-2ag	;	1	,-2ag	;	0	*	*	2	,-2ag,-2ag	;;
-Chromosome4	259247176	T	1	a	J	0	*	*	1	,	J	0	*	*	3	,,a	JJF
-Chromosome4	259332907	A	2	.T	JJ	1	T	J	0	*	*	0	*	*	1	.	7
-Chromosome4	259332927	A	2	.G	JJ	1	G	A	0	*	*	0	*	*	1	.	7
-Chromosome4	259336125	C	0	*	*	1	G	s	2	.G	ks	1	.$	a	0	*	*
-Chromosome4	259336160	A	0	*	*	1	,-8cttttttt	J	1	,-8cttttttt	J	1	,-8cttttttt	F	0	*	*
-Chromosome4	259338751	T	0	*	*	0	*	*	1	.-1A	l	1	.-1A	e	1	.-1A	R
-Chromosome4	259338760	A	0	*	*	0	*	*	1	.-3GAG	G	1	.-3GAG	C	1	.-3GAG	G
-Chromosome4	259340578	T	1	,-8ctagtgcg	6	0	*	*	1	,-8ctagtgcg	6	1	,	J	0	*	*
-Chromosome4	259345540	C	1	,	J	0	*	*	1	t	F	0	*	*	2	T,	s7
-Chromosome4	259547156	G	0	*	*	1	,	J	0	*	*	2	.a	sJ	1	t	F
-Chromosome4	259739613	T	0	*	*	4	C.C.	JJJA	2	..	FJ	1	C	J	2	C.	JJ
-Chromosome4	259814522	A	1	G	F	0	*	*	2	..	JJ	3	..-1T.	FJJ	0	*	*
-Chromosome4	259836188	G	0	*	*	1	.	J	1	A	J	0	*	*	3	.C,	JJJ
-Chromosome4	259836195	C	0	*	*	1	.	J	1	G	J	0	*	*	3	.A,	JJF
-Chromosome4	259836200	A	0	*	*	1	.	J	1	C	J	0	*	*	3	.C,	JJJ
-Chromosome4	259836208	G	0	*	*	1	.	J	1	*	C	0	*	*	3	.T,	JFJ
-Chromosome4	259836218	T	0	*	*	1	.	J	1	C	7	0	*	*	3	CG,	JJJ
-Chromosome4	259836219	G	0	*	*	1	.	J	1	.-1A	7	0	*	*	3	.C,	JJJ
-Chromosome4	259836220	A	0	*	*	1	.	J	1	*	8	0	*	*	3	.G,	JFJ
-Chromosome4	259836232	G	0	*	*	1	.	J	1	A	J	0	*	*	3	.Aa	JJJ
-Chromosome4	259836240	C	0	*	*	1	.	7	1	T	J	0	*	*	3	.T,	JJJ
-Chromosome4	259836483	A	0	*	*	1	,	J	2	,g	JJ	0	*	*	2	,g	JF
-Chromosome4	259836532	T	0	*	*	1	,	F	2	c,	:F	0	*	*	1	c	:
-Chromosome4	259893672	A	0	*	*	4	.G..	JJJJ	4	....	JJJF	3	.G.	JFs	3	.GG	JJJ
-Chromosome4	259893692	T	0	*	*	4	.C..	gAgg	4	....	gJgg	3	.C.	JFs	3	CCC	?JJ
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-Chromosome5	94227828	C	5	....T	JJJFJ	4	A...	JAJJ	0	*	*	2	T.	JJ	2	..	JJ
-Chromosome5	94228013	C	5	,,t,,	FFFJJ	4	.,t,	oJAJ	0	*	*	3	,,t	FJA	2	,,	7F
-Chromosome5	94228101	T	5	a,,,,	JFJJJ	4	a,,a	JJJJ	0	*	*	3	,,,	JJJ	2	aa	AJ
-Chromosome5	94248319	G	3	,,t	AFJ	0	*	*	1	t	J	0	*	*	1	.	s
-Chromosome5	94248375	G	3	,,a	FJF	0	*	*	1	a	J	0	*	*	1	,	J
-Chromosome5	94267434	A	1	,	J	0	*	*	1	g	J	2	g,	JJ	0	*	*
-Chromosome5	94311989	A	0	*	*	2	GT	Js	1	G	=	0	*	*	2	T.	7J
-Chromosome5	94312000	T	0	*	*	2	CC	Fs	1	.	J	0	*	*	2	C.	F7
-Chromosome5	94342156	T	0	*	*	2	.G	JJ	3	...	55J	0	*	*	1	G	J
-Chromosome5	94350672	A	1	.-1G	7	0	*	*	1	.	A	0	*	*	1	T	7
-Chromosome5	94355207	T	3	,,,	JJJ	0	*	*	1	c	J	2	,c	JJ	0	*	*
-Chromosome5	94355682	T	0	*	*	0	*	*	1	C	s	2	C.	se	1	.	j
-Chromosome5	94355763	G	0	*	*	0	*	*	1	A	s	2	A.	se	1	.	s
-Chromosome5	94355777	G	0	*	*	0	*	*	1	A	s	2	A.	o`	1	.	s
-Chromosome5	94355787	A	0	*	*	0	*	*	1	T	k	2	T.	oj	1	.	o
-Chromosome5	94355943	G	0	*	*	0	*	*	1	A	J	1	.	A	2	A.	sF
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-Chromosome5	94356071	A	0	*	*	0	*	*	1	g	J	2	.$g	W<	1	,	J
-Chromosome5	94356170	T	0	*	*	0	*	*	1	g	J	1	,	F	2	,G	JJ
-Chromosome5	94356171	A	0	*	*	0	*	*	1	g	J	1	,	A	2	,G	JJ
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-Chromosome5	94356204	A	0	*	*	0	*	*	1	g	J	1	,$	>	2	,$G	>J
-Chromosome5	94387759	G	2	..	JJ	1	A	J	0	*	*	3	.A.	JAF	0	*	*
-Chromosome5	94387823	G	2	..	<J	1	A	J	0	*	*	3	.A.	FFJ	0	*	*
-Chromosome5	94387840	T	1	.	J	1	G	J	0	*	*	3	.G.	JeF	0	*	*
-Chromosome5	94387857	G	1	.	e	1	A	J	0	*	*	3	.A.	Jo<	0	*	*
-Chromosome5	94387869	T	2	..	7s	1	C	J	0	*	*	3	.C.	AjF	0	*	*
-Chromosome5	94399671	C	0	*	*	2	.-1A.-1A	GG	1	.-1A	G	2	.-1A.-1A	G7	0	*	*
-Chromosome5	94452255	T	1	.-5TACAG	<	0	*	*	1	.	J	1	.-5TACAG	<	0	*	*
-Chromosome5	94453391	C	1	.	J	0	*	*	1	.-2TT	F	0	*	*	1	.-1T	D
-Chromosome5	94564479	A	0	*	*	1	.	J	1	C	J	4	g...	JJJJ	0	*	*
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-Chromosome5	94564596	G	0	*	*	1	a	J	1	,	J	3	.a,	oJJ	0	*	*
-Chromosome5	94564670	A	0	*	*	1	t	J	1	,	J	3	,t,	JJJ	0	*	*
-Chromosome5	94585861	T	1	,-3atc	A	1	,-3atc	A	0	*	*	1	,	J	0	*	*
-Chromosome5	94812088	C	3	.T.	AJJ	0	*	*	3	...	F7J	0	*	*	4	.TT.	AFJJ
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-Chromosome5	94979470	C	0	*	*	3	T.T	JJJ	1	.	F	0	*	*	1	T	J
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-Chromosome5	95072467	C	2	,t	JJ	1	t	J	0	*	*	0	*	*	1	,	F
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-Chromosome5	95266232	G	2	,-1a,	77	1	,-1a	A	1	,-1a	<	1	,	F	2	,-1a,-1a	<F
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-Chromosome5	95518969	C	2	.T	FJ	1	T	s	3	T.T	FsA	0	*	*	1	.	J
-Chromosome5	95520708	C	1	.	J	0	*	*	1	A	J	0	*	*	5	...A.	JJJFJ
-Chromosome5	95520899	A	1	,-1t	J	0	*	*	2	,-1t,-1t	JJ	0	*	*	5	,-1t,-1t,-1t,,	JJFJJ
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-Chromosome5	95534738	G	2	..	JJ	4	A...	JJsJ	0	*	*	4	..A.	JJJJ	4	A.A.	FJJJ
-Chromosome5	95534802	G	2	..	ss	4	A..A	soss	0	*	*	4	..A.	ssss	4	..A.	oo\s
-Chromosome5	95534834	C	2	..	ss	4	..T.	ssss	0	*	*	4	T.T.	ssss	4	T...	ojfj
-Chromosome5	95534908	C	2	,,	JJ	3	,,a	JJJ	0	*	*	3	,,t	FJJ	4	,t,,	JJFJ
-Chromosome5	95703861	T	0	*	*	1	.	J	2	.+1G.	sJ	0	*	*	1	G	s
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-Chromosome5	95722191	C	1	T	F	0	*	*	1	.	J	2	.T	JJ	0	*	*
-Chromosome5	95722390	A	1	g	J	0	*	*	1	,	J	2	g,	JJ	0	*	*
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-Chromosome5	95801649	A	0	*	*	1	G	s	6	G.....	kosojo	0	*	*	2	..	so
-Chromosome5	95801678	T	0	*	*	1	c	J	6	,cccc,	JJJJJA	0	*	*	2	,$c	?J
-Chromosome5	95817439	T	1	G	s	0	*	*	1	.	J	2	,C	JJ	0	*	*
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-Chromosome5	96080031	C	0	*	*	1	.	s	1	T	s	0	*	*	2	T.	js
-Chromosome5	96080949	C	0	*	*	2	..	JJ	1	T	7	0	*	*	2	.T	JJ
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-Chromosome5	96200866	A	1	G	J	0	*	*	3	G..	JJJ	0	*	*	1	.	F
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-Chromosome5	96483320	C	0	*	*	2	G.	Jj	1	G	F	0	*	*	1	.	7
-Chromosome5	96483641	G	0	*	*	1	,-2ta	F	1	,-2ta	J	0	*	*	1	,-2ta	F
-Chromosome5	96651955	C	1	.	s	0	*	*	3	.T.	ss`	3	.T.	sse	4	...T	sVss
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-Chromosome5	96755730	G	2	,-1a,-1a	F<	0	*	*	1	,-1a	J	1	,-1a	J	1	,	J
-Chromosome5	96774986	C	0	*	*	1	.	J	1	.-3TAT	J	1	.-3TAT	F	0	*	*
-Chromosome5	96782695	G	0	*	*	1	.	J	1	.-5GAGAC	6	1	.-5GAGAC	6	0	*	*
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-Chromosome5	96811886	T	2	c,	FJ	2	cc	AJ	3	.cc	eJJ	6	c,cccc	JJJFFJ	8	a,,ccccc	JJ<JAJF7
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-Chromosome5	96924270	G	0	*	*	1	,-1c	=	1	,-1c	7	1	,	J	0	*	*
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-Chromosome5	97053509	T	2	.C	FJ	0	*	*	2	C.	JJ	0	*	*	1	.	J
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-Chromosome5	97810794	T	1	C	J	0	*	*	0	*	*	1	.	J	2	.C	FJ
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-Chromosome5	97846313	C	2	,-3atg,-3atg	FJ	0	*	*	2	,-3atg,-3atg	JC	1	,-3atg	J	4	,-3atg,-3atg,-3atg,	JJJJ
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-Chromosome5	97925558	A	1	,	J	5	,,,c,	JJFJJ	5	cc,ct	JJJJJ	7	,,,cctt	JJJFJAJ	3	ccc	JJJ
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-Chromosome5	98234630	C	1	T	`	0	*	*	3	T,T	eJs	1	,	J	0	*	*
-Chromosome5	98237298	T	2	.+2AG.+2AG	JJ	2	,+2ag.	s7	5	.+2AG.+2AG.+2AG..+2AG	JJJJJ	2	.+2AG.+2AG	JJ	7	,+2ag.+2AG.+2AG.+2AG.+2AG.+2AG.+2AG	sJJJJJJ
-Chromosome5	98237307	C	2	.-8ATATTAGT.-8ATATTAGT	JJ	2	,-8atattagt.	sF	5	.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT..-8ATATTAGT	JJJJF	2	.-8ATATTAGT.-8ATATTAGT	AJ	7	,-8atattagt.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT.-8ATATTAGT	s7JJJJJ
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-Chromosome5	98268373	G	0	*	*	1	T	J	0	*	*	2	T.	JJ	1	.	J
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-Chromosome5	98300205	T	0	*	*	0	*	*	4	CCCC	JJJJ	2	.C	JJ	2	C.	JJ
-Chromosome5	98300210	A	0	*	*	0	*	*	4	GGGG	JJJJ	2	.G	JJ	2	G.	JJ
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-Chromosome5	98354196	G	2	T.	JJ	1	.	F	2	.T	JJ	0	*	*	0	*	*
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-Chromosome5	98989255	C	1	T	J	1	.	J	0	*	*	2	T.	<J	0	*	*
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-Chromosome5	99108743	C	2	T.	JF	1	T	F	0	*	*	0	*	*	1	.	F
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-Chromosome5	99109009	G	2	a,	JJ	2	.a	sJ	0	*	*	0	*	*	1	,	F
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-Chromosome5	99109068	C	2	t,	JJ	2	.t	s@	0	*	*	0	*	*	1	,	J
-Chromosome5	99109082	G	2	a,	FF	2	aa	FF	0	*	*	0	*	*	1	,	F
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-Chromosome5	99221634	A	3	T.T	JJF	1	T	J	0	*	*	0	*	*	1	.	F
-Chromosome5	99221660	C	3	T.T	JJF	1	T	J	0	*	*	0	*	*	1	.	F
-Chromosome5	99221669	G	3	C.C	JJJ	1	C	J	0	*	*	0	*	*	1	.	J
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-Chromosome5	99296668	T	1	a	J	0	*	*	2	ag	FF	0	*	*	1	g	J
-Chromosome5	99468979	C	0	*	*	3	.AT	sJJ	1	.	J	3	TT.	Jss	1	T	J
-Chromosome5	99476547	T	0	*	*	2	G.	JJ	0	*	*	2	..	JF	3	G.G	JJJ
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-Chromosome5	145779463	G	0	*	*	2	..	JJ	1	T	J	2	AC	FF	1	A	J
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-Chromosome5	180179882	G	2	..	JJ	7	...-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.	JJ=JJ=F	116	.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA........-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA	===J====J=J=JA=JJF======J=J=<JoJJJj==JJ====J=J==JJ==J==<=====JoJ=J=========J=JJJ===YJ===J===J====J=JJ=JJ===JJ==J==J=	21	.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA...-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.......	====J=JJ=JJJ==JJJJJJF	67	..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA....-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.....-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA......-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA.-28CAGTATAATGAGAAGTAATACTATAAAA..	s==========J=J====J=J==JJJ=J=J===JJJF====A==J=F<==<<====JJJJJ====JJ
-Chromosome5	180180020	A	2	,,	JJ	7	,,,,,,,-1t	JJJJAJJ	115	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,+1t,,..,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,,-1t,	AJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJssJJJJJJJJJJJJJJJJ7JJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJFJF	20	,,,,,,,,,,,+1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t	JJJJJJJJJJJJJJJJJJJJ	65	,,,,,,,,,,,,,,,,,,,,,,+1t,,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t,-1t	JJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJ<JJJJJJJJJF
-Chromosome5	180197439	T	0	*	*	1	C	s	0	*	*	3	C..	oss	1	.	f
-Chromosome5	180197470	C	0	*	*	1	T	s	0	*	*	3	T..	jss	1	.	o
-Chromosome5	180232992	A	1	T	J	0	*	*	1	.	J	0	*	*	2	.T	JJ
-Chromosome5	180394863	T	0	*	*	2	.a	`J	1	.	F	2	.a	sJ	0	*	*
-Chromosome5	180394912	G	0	*	*	2	,,	JJ	2	.a	7J	2	A,	sJ	0	*	*
-Chromosome5	180394927	T	0	*	*	2	,c	JJ	1	,	F	2	.c	sJ	0	*	*
-Chromosome5	180465769	T	6	..C...	JJ<JJJ	3	C..	JJJ	6	...C..	JJAJJJ	4	..C.	JAJF	6	......	JJ<FJJ
-Chromosome5	180465832	C	5	,,t,,	<F7J<	3	,,t	F<;	6	tt,,,,	;7JJFJ	4	G,,,	`JJJ	6	,,t,,,	<J:<AF
-Chromosome5	180556891	C	1	.	J	0	*	*	2	G.	JJ	1	G	J	0	*	*
-Chromosome5	180556974	A	1	.	J	0	*	*	2	.-1T.	JJ	1	.-1T	F	0	*	*
-Chromosome5	180556983	G	1	.	J	0	*	*	2	A.	J<	1	A	J	0	*	*
-Chromosome5	180557007	G	1	.	J	0	*	*	2	C.	JF	1	C	A	0	*	*
-Chromosome5	180557094	T	1	,	J	0	*	*	2	a,	JJ	1	a	J	0	*	*
-Chromosome5	180557095	C	1	,	J	0	*	*	2	t,	JJ	1	t	J	0	*	*
-Chromosome5	180557110	A	1	,	<	0	*	*	2	t,	JJ	1	t	J	0	*	*
-Chromosome5	180557134	G	1	,	J	0	*	*	2	c,	JJ	1	c	J	0	*	*
-Chromosome5	180557135	T	1	,	J	0	*	*	2	c,	JJ	1	c	J	0	*	*
-Chromosome5	180715783	G	1	t	J	0	*	*	0	*	*	2	A,	sJ	1	.	s
-Chromosome5	180805266	G	1	,	J	1	T	\	0	*	*	2	T.	ss	0	*	*
-Chromosome5	180812167	C	0	*	*	0	*	*	1	t	J	2	.,	JJ	3	T..	JJJ
-Chromosome5	180812169	A	0	*	*	0	*	*	1	g	J	2	G,	J<	3	.GG	JJJ
-Chromosome5	180812202	G	0	*	*	1	A	A	2	,A	JJ	3	.,A	aJs	4	...A	7JJJ
-Chromosome5	180812224	C	0	*	*	1	T	J	2	,T	JF	3	A,.	jJs	3	AAT	F<J
-Chromosome5	180812227	G	0	*	*	1	A	<	2	,A	JJ	3	.a.	\Js	3	..A	JJJ
-Chromosome5	180812230	A	0	*	*	1	C	F	2	gC	JJ	3	GgG	oJs	3	TTC	JJJ
-Chromosome5	180812232	G	0	*	*	1	T	A	2	,T	JF	3	.,.	o<s	3	..T	JJJ
-Chromosome5	180812312	G	0	*	*	0	*	*	1	,	J	2	T,	`F	1	t	J
-Chromosome5	180813356	G	2	,c	JF	1	c	J	0	*	*	1	.	s	0	*	*
-Chromosome5	180813360	G	2	,t	JF	1	t	J	0	*	*	1	.	s	0	*	*
-Chromosome5	180813377	T	2	,g	FF	1	g	J	0	*	*	1	,	J	0	*	*
-Chromosome5	180813378	T	2	,g	JF	1	g	J	0	*	*	1	,	J	0	*	*
-Chromosome5	180813389	A	2	,c	FF	1	c	J	0	*	*	1	,$	A	0	*	*
-Chromosome5	180864623	G	2	.T	JJ	0	*	*	0	*	*	1	.	J	2	.T	JJ
-Chromosome5	180864626	A	2	.G	JJ	0	*	*	0	*	*	1	.	J	2	.G	JJ
-Chromosome5	180864640	G	2	.C	JJ	0	*	*	0	*	*	1	.	J	2	.C	JJ
-Chromosome5	180864641	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	2	.C	JJ
-Chromosome5	180864642	G	2	.T	JJ	0	*	*	0	*	*	1	.	J	2	.T	JJ
-Chromosome5	180864775	G	3	aa,	AFJ	0	*	*	0	*	*	2	.,	oJ	2	A.	WJ
-Chromosome5	180864780	G	2	a,	7J	0	*	*	0	*	*	2	.,	sJ	2	.a	JF
-Chromosome5	180864796	C	3	aa,	7JJ	0	*	*	0	*	*	2	.,	sJ	2	.a	jA
-Chromosome5	180864828	T	3	aa,	<AJ	0	*	*	0	*	*	2	.,	sJ	2	.a	jJ
-Chromosome5	180864837	A	2	c,	<J	0	*	*	0	*	*	2	.,	sJ	2	.c	VA
-Chromosome5	180864875	C	2	a,	JJ	0	*	*	0	*	*	2	,,	JJ	1	a	<
-Chromosome5	180864890	C	2	t,	JJ	0	*	*	0	*	*	2	,,	JJ	1	t	J
-Chromosome5	180866174	A	0	*	*	1	G	7	2	G.	JJ	3	...	J7J	0	*	*
-Chromosome5	180866317	A	0	*	*	1	g	J	2	g,	J<	4	.,,,	JFJ7	0	*	*
-Chromosome5	180866364	G	0	*	*	1	,	F	2	,a	JJ	2	t,	JJ	0	*	*
-Chromosome5	180926986	A	2	g,	JJ	1	G	s	0	*	*	0	*	*	1	,	<
-Chromosome5	181020652	A	2	.G	JJ	1	G	J	0	*	*	1	.	J	0	*	*
-Chromosome5	181020683	C	2	.T	JJ	1	T	J	0	*	*	1	.	J	0	*	*
-Chromosome5	181020684	T	2	.G	JJ	1	G	J	0	*	*	1	.	J	0	*	*
-Chromosome5	181020915	C	2	a,	FA	1	g	J	0	*	*	2	.,	sJ	0	*	*
-Chromosome5	181087961	G	1	,	A	0	*	*	1	a	J	0	*	*	2	a,	FJ
-Chromosome5	181090516	T	0	*	*	2	.,-3tgc	s:	1	,-3tgc	:	0	*	*	1	,-3tgc	:
-Chromosome5	181185099	T	0	*	*	0	*	*	1	.-1A	J	1	.	J	2	..-1A	JJ
-Chromosome5	181214822	G	0	*	*	1	A	s	0	*	*	1	.	a	2	A.	ss
-Chromosome5	181314641	A	0	*	*	0	*	*	1	,	A	1	G	s	2	G,	JA
-Chromosome5	181314646	A	0	*	*	0	*	*	1	,	F	1	G	s	2	G,	JJ
-Chromosome5	181314651	C	0	*	*	0	*	*	1	,	<	1	A	s	2	A,	JJ
-Chromosome5	181314673	C	0	*	*	0	*	*	1	t	F	1	.	s	2	.t	JF
-Chromosome5	181314682	T	0	*	*	0	*	*	1	,	J	1	C	s	2	C,	JJ
-Chromosome5	181314690	C	0	*	*	0	*	*	1	,	J	1	T	s	2	T,	JJ
-Chromosome5	181314694	C	0	*	*	0	*	*	1	,	J	1	G	s	2	A,	JF
-Chromosome5	181314698	C	0	*	*	0	*	*	1	,	F	1	A	s	2	A,	JJ
-Chromosome5	181314702	A	0	*	*	0	*	*	1	,	J	2	.+1T,+1t	JJ	2	.+1T,	IJ
-Chromosome5	181314716	C	0	*	*	0	*	*	1	t	F	1	A	s	2	A,	JJ
-Chromosome5	181314736	A	0	*	*	0	*	*	1	,	F	1	C	s	2	C,	sF
-Chromosome5	181390697	A	6	......	AJFAJ<	3	TT.	J<A	3	.TT	JFF	1	T	J	6	...TTT	J7JJJJ
-Chromosome5	181400992	G	4	,,,a	JJJ7	1	,	7	4	.Aa,	ss7F	5	,aa,,	JA7<J	4	,,aa	FFFA
-Chromosome5	181434998	A	0	*	*	1	.	s	0	*	*	2	.G	so	1	G	e
-Chromosome5	181434999	T	0	*	*	1	.	s	0	*	*	2	.C	so	1	C	k
-Chromosome5	181475566	G	9	...AA....	JJJFJJJ7<	3	..A	JJJ	9	.......A.	JJJJJFJJJ	3	A..	F<J	8	........	JFJJJJFF
-Chromosome5	181475591	T	7	C.C...C	J7JJFJJ	3	...	JJJ	9	.C.......	FAJJJJ<J<	3	.CC	JFJ	9	CC.C.C.CC	JJJJJFJJ7
-Chromosome5	181483273	C	2	AA	JJ	0	*	*	5	A..A.	JFJJJ	2	..	JJ	3	.A.	FJJ
-Chromosome5	181483718	G	3	,,,	JJJ	0	*	*	6	a,,,,,	JAJJJJ	3	a,,	CJJ	3	,a,	JAJ
-Chromosome5	181484631	C	1	A	o	1	.	J	4	A...	sFFJ	0	*	*	0	*	*
-Chromosome5	181979765	T	1	a	J	1	,	<	0	*	*	2	.a	sJ	0	*	*
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-Chromosome5	182024895	G	0	*	*	4	t,,,	JAJJ	1	,	J	0	*	*	2	at	JJ
-Chromosome5	182024917	T	0	*	*	4	a,,,	JJJJ	1	c	J	0	*	*	2	,a	JJ
-Chromosome5	182038861	G	1	T	s	2	.T	Js	0	*	*	0	*	*	2	..	ss
-Chromosome5	182154596	T	3	.C.	JJJ	1	.	J	2	.C	JJ	2	CC	JJ	0	*	*
-Chromosome5	182161623	T	3	.C.	JJJ	0	*	*	1	C	F	0	*	*	6	......	J77JF7
-Chromosome5	182214966	G	24	,,,,,,,,,,,,,,,a,,,,,,,,	FFFFFFFFAFFFFFFFFFFFFFFF	11	,,,,,,,,,,,	FFFFFFFFFFF	21	,,,,,,,,,,,t,,,,,,,,,	FAFFFFFFFFFFFFFFFF7FF	17	,,,,,a,,a,,tt,,,,	FFFFFFFFFFFFFFFFF	25	,,,,a,,,,,,,t,,,,,,,,,,,,	FFFFFFFFFFFFAFFFFFFFFFFFF
-Chromosome5	182276414	G	0	*	*	2	T.	JJ	0	*	*	1	.	s	1	T	A
-Chromosome5	182354951	G	1	,-1a	J	0	*	*	1	,-1a	F	0	*	*	2	,-1a,-1a	JF
-Chromosome5	182363128	A	3	,,G	FJJ	0	*	*	4	,GGG	FoJs	2	GG	ns	0	*	*
-Chromosome5	182363206	T	3	,,G	AAF	0	*	*	4	,GGG	Asos	2	GG	ss	0	*	*
-Chromosome5	182613052	G	0	*	*	3	..T	JJJ	1	A	J	0	*	*	1	.	J
-Chromosome5	182835538	C	0	*	*	1	.-4CGAT	Y	0	*	*	1	.-4CGAT	Y	1	.-4CGAT	Y
-Chromosome5	182844687	A	1	.-1C	F	1	.-1C	<	0	*	*	0	*	*	1	.-1C	J
-Chromosome5	183338587	G	1	C	F	0	*	*	0	*	*	2	..	JJ	4	..C.	JFJJ
-Chromosome5	183435289	C	1	.	J	1	A	J	2	A.	JJ	0	*	*	0	*	*
-Chromosome5	183435343	C	2	.-1T,	QA	1	,	A	1	.-1T	J	0	*	*	0	*	*
-Chromosome5	183435373	T	1	,	F	2	,a	FJ	2	gg	AJ	0	*	*	0	*	*
-Chromosome5	183435414	T	2	,,	JA	2	,g	JJ	1	g	F	0	*	*	0	*	*
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-Chromosome5	183435419	G	2	,,	JF	2	,c	JF	2	cc	FJ	0	*	*	0	*	*
-Chromosome5	183435421	A	2	,,	JF	2	,t	JJ	2	tt	FJ	0	*	*	0	*	*
-Chromosome5	183435422	T	2	gg	JJ	2	ga	JJ	2	aa	JJ	0	*	*	0	*	*
-Chromosome5	183435423	A	2	,g	JF	2	g,	JJ	2	,,	JJ	0	*	*	0	*	*
-Chromosome5	183435456	C	2	,,	J7	2	,t	JJ	2	tt	JJ	0	*	*	0	*	*
-Chromosome5	183436412	C	1	.-2GG	J	0	*	*	1	T	J	1	.	F	0	*	*
-Chromosome5	183462004	C	0	*	*	1	.-6ATTATT	J	2	.-6ATTATT.-6ATTATT	FJ	0	*	*	1	.	F
-Chromosome5	183591766	A	0	*	*	0	*	*	1	.-4CGGC	j	1	,	o	1	.-4CGGC	s
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-Chromosome5	221020664	T	9	ccc,,,,,,	JJJJJJFJJ	1	,	J	7	,,,,,c,	JJJJJJJ	5	c,,,c	JJJJJ	11	,,,cccccc,,	JFJJJJJJJJJ
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-Chromosome5	229485280	C	0	*	*	1	,	J	0	*	*	2	t,	JJ	2	tt	JJ
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-Chromosome5	229489581	T	2	.C	FF	0	*	*	1	C	J	0	*	*	1	.	F
-Chromosome5	229515247	A	3	..C	sJJ	0	*	*	1	.	J	0	*	*	1	C	J
-Chromosome5	229515333	G	3	..C	sJJ	0	*	*	1	.	J	0	*	*	1	C	J
-Chromosome5	229515492	T	2	,g	JJ	0	*	*	0	*	*	1	.+7GGGAAAC	s	1	g	F
-Chromosome5	229542139	G	0	*	*	1	A	F	2	A.	7J	0	*	*	1	.	J
-Chromosome5	229605065	C	0	*	*	0	*	*	1	.	J	3	,Gg	Jss	1	G	s
-Chromosome5	229605093	T	0	*	*	0	*	*	1	.	J	2	.-3GTC,	Ss	2	.-3GTC.	SJ
-Chromosome5	229618139	G	1	.	n	0	*	*	0	*	*	1	A	J	2	A.	Js
-Chromosome5	229717300	G	2	.C	jJ	1	.	o	0	*	*	1	C	J	0	*	*
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-Chromosome5	229717351	G	2	T,	sJ	1	,	J	0	*	*	1	T	s	0	*	*
-Chromosome5	229717382	G	2	T,	sJ	1	,	J	0	*	*	1	T	s	0	*	*
-Chromosome5	229717399	G	2	T,	sJ	1	,	J	0	*	*	1	T	s	0	*	*
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-Chromosome5	229854261	G	1	C	J	0	*	*	1	.	J	0	*	*	2	C.	JJ
-Chromosome5	230492584	A	0	*	*	2	T.	JJ	1	T	J	1	.	J	0	*	*
-Chromosome5	230492779	T	0	*	*	2	a,	JJ	1	a	F	1	,	F	0	*	*
-Chromosome5	230598234	G	0	*	*	2	TT	AJ	0	*	*	1	.	J	3	.T.	JJJ
-Chromosome5	230598318	G	0	*	*	2	.+2TT.+2TT	FA	0	*	*	2	..+2TT	JJ	3	..+2TT.	JJJ
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-Chromosome5	230647516	G	0	*	*	0	*	*	2	.A	os	3	A..	sss	2	..	ss
-Chromosome5	230930685	T	1	.-1G	F	0	*	*	2	.-1G.-1G	JJ	0	*	*	1	.-1G	>
-Chromosome5	231012335	T	2	,c	JF	1	,	J	1	c	J	0	*	*	0	*	*
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-Chromosome5	231120475	T	0	*	*	2	..	os	4	...C	osso	2	C.	ss	2	.G	ss
-Chromosome5	231139817	G	0	*	*	1	A	F	2	A.	FF	1	,	k	0	*	*
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-Chromosome5	231360658	C	0	*	*	1	.-9CGGGACCGG	s	0	*	*	1	T	J	1	.	F
-Chromosome5	231387160	T	0	*	*	0	*	*	1	.	s	1	G	s	2	A.	as
-Chromosome5	231474973	C	4	,,aa	JJJJ	1	a	J	4	,,,,	JJJJ	4	,,aa	JJJJ	0	*	*
-Chromosome5	231485959	T	3	,,a	FJ<	3	,,,	FJJ	0	*	*	0	*	*	8	,,a,,,,,	JAJFJAJJ
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-Chromosome5	231643966	A	2	.T	JJ	0	*	*	1	T	J	0	*	*	1	.	J
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-Chromosome5	231643975	G	2	.A	JJ	0	*	*	1	A	J	0	*	*	1	.	J
-Chromosome5	231674353	A	0	*	*	1	G	J	1	.	J	0	*	*	2	G.	JJ
-Chromosome5	231689604	T	0	*	*	2	.G	JJ	1	.	J	0	*	*	2	GG	JJ
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-Chromosome5	231707975	T	0	*	*	1	c	F	2	,c	FF	2	,c	JJ	2	c,	JJ
-Chromosome5	231851818	A	0	*	*	0	*	*	1	.-4GATC	8	1	.-3GAT	6	1	.-3GAT	6
-Chromosome5	231865357	A	0	*	*	0	*	*	3	..-2ACG	JIs	1	.	7	2	GG	sj
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-Chromosome5	232047820	G	0	*	*	2	,C	JJ	0	*	*	2	.c	JJ	1	,	J
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-Chromosome5	232305374	C	0	*	*	2	T,	FJ	0	*	*	3	t,,	JAA	2	,.	JJ
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-Chromosome5	232665856	G	3	..A	JJJ	4	..A.	JJFJ	6	......	JJJJsJ	4	,A..	oJJJ	3	A..	<JJ
-Chromosome5	232669123	A	0	*	*	0	*	*	2	G.	JF	1	.	j	2	.T	JJ
-Chromosome5	232690313	T	1	A	J	0	*	*	2	.A	JJ	0	*	*	4	....	FJJJ
-Chromosome5	232690315	T	1	C	J	0	*	*	2	.C	JJ	0	*	*	4	....	JJJJ
-Chromosome5	232690472	C	1	t	J	0	*	*	2	,t	JJ	0	*	*	5	,,,,,	JJJFJ
-Chromosome5	232690507	C	1	,	J	0	*	*	2	a,	JJ	0	*	*	5	aa,aa	JJJJJ
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-Chromosome5	232848271	C	0	*	*	0	*	*	3	T..	JJJ	1	T	J	2	T.	JJ
-Chromosome5	232994732	G	4	,-1a,-1a,-1a,-1a	FJJJ	4	..,-1a,-1a	soJJ	6	,-1a,-1a,-1a,,,-1a	JJJJ7J	3	,-1a,-1a,-1a	JJJ	5	,-1a,-1a,-1a,-1a,-1a	JJJJJ
-Chromosome5	233085582	T	0	*	*	1	.	A	3	C,,	sJ7	0	*	*	2	CC	sJ
-Chromosome5	233085585	C	0	*	*	1	T	<	3	.tt	sJJ	0	*	*	2	..	sJ
-Chromosome5	233103191	A	0	*	*	0	*	*	1	,	J	2	g^],	<E	1	g	F
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-Chromosome5	233124198	G	0	*	*	1	.	J	3	.A.	Jos	0	*	*	1	C	J
-Chromosome5	233124204	A	0	*	*	1	T	_	3	CTC	Jss	0	*	*	1	C	J
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-Chromosome5	233126975	T	0	*	*	0	*	*	2	..	JJ	1	C	J	2	.C	JJ
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-Chromosome5	233127056	C	0	*	*	0	*	*	2	GG	JJ	1	T	`	2	GT	JJ
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-Chromosome5	233127115	G	0	*	*	0	*	*	2	cc	JJ	1	,	J	2	,c	JJ
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-Chromosome5	233377199	C	1	.	j	0	*	*	0	*	*	1	T	j	2	.T	`o
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-Chromosome5	233485837	G	0	*	*	1	A	J	1	.	J	0	*	*	2	.A	J<
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-Chromosome5	233485888	G	1	.	J	1	C	J	0	*	*	0	*	*	2	.C	FJ
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-Chromosome5	233809732	A	1	.-3CTG	G	0	*	*	0	*	*	1	.	J	1	.-3CTG	G
-Chromosome5	233809783	A	1	.-1T	s	0	*	*	0	*	*	1	.	J	1	.-1T	s
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-Chromosome5	234064362	C	0	*	*	3	..t	sJJ	2	,,	JJ	1	g	J	0	*	*
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-Chromosome5	234072721	T	0	*	*	1	,	J	1	,-1c	E	1	,-1c	E	0	*	*
-Chromosome5	234118552	C	1	.	J	0	*	*	3	GG.	JJJ	0	*	*	1	G	J
-Chromosome5	234118626	A	1	.	J	0	*	*	3	GG.	JJF	0	*	*	1	G	J
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-Chromosome5	234118764	A	1	,	J	0	*	*	3	cc,	JFJ	0	*	*	1	c	J
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-Chromosome5	234623680	C	0	*	*	1	.-2TT	>	1	.-2TT	>	0	*	*	1	.-2TT	>
-Chromosome5	234641950	C	1	g	J	0	*	*	2	,,	JF	2	g,	JJ	0	*	*
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-Chromosome5	234704736	A	0	*	*	0	*	*	1	,-1c	J	1	,-1c	J	2	,-1c,	JJ
-Chromosome5	234709510	C	0	*	*	1	,-2aa	F	2	,-2aa,-1a	JF	1	.	R	0	*	*
-Chromosome5	234711507	A	0	*	*	1	G	J	3	GG.	JJJ	2	..	JJ	0	*	*
-Chromosome5	234711572	A	0	*	*	1	G	e	3	GG.	aRo	2	..	sf	0	*	*
-Chromosome5	234711628	G	0	*	*	1	,-1a	J	3	a,,	AJF	2	,t	JJ	0	*	*
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-Chromosome5	234711687	C	0	*	*	1	g	<	3	agg	JJ7	2	,,	JJ	0	*	*
-Chromosome5	234758213	G	4	,,,,	JJJJ	6	,,,tt,	JJJJAA	16	,,,,,ttt,,,,,,,,	JAJJJJJJJJJAJJJF	4	,t,,	JJJJ	15	,,t,tt,,,,,,,,,	JJJJFJJJJJJJFJJ
-Chromosome5	234761079	C	3	.T.	JJA	3	.T.	oJJ	3	..T	JFJ	5	.A..T	7JsJJ	3	AA.	AJJ
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-Chromosome5	234770732	C	1	.	J	0	*	*	6	..AAAA	JJJJJJ	2	A.	JJ	5	AA.AG	FJJJA
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-Chromosome5	234792472	G	0	*	*	2	A.	JJ	3	.A.	JJJ	0	*	*	1	A	J
-Chromosome5	234792562	T	0	*	*	2	c,	JA	3	c,,	JFJ	0	*	*	1	,	F
-Chromosome5	234792628	G	0	*	*	2	,a	JJ	3	,a,	JJJ	0	*	*	1	,	J
-Chromosome5	234792632	G	0	*	*	1	,	J	3	,,a	JJJ	0	*	*	1	a	J
-Chromosome5	234792639	G	0	*	*	1	,	J	3	,,t	JJJ	0	*	*	1	t	J
-Chromosome5	234792658	C	0	*	*	2	,,	JJ	3	,,t	JJJ	0	*	*	1	t	J
-Chromosome5	234792669	G	0	*	*	2	,,	JJ	3	,,a	JJJ	0	*	*	1	a	J
-Chromosome5	234793326	G	1	A	J	1	.	J	2	.A	Js	0	*	*	0	*	*
-Chromosome5	234793367	C	1	.	J	1	T	J	2	.T	Js	0	*	*	0	*	*
-Chromosome5	234828689	C	20	........T...........	Asjsssooesss`VsjoseM	34	..................................	sssssaosjsssj`ooVsssosssoaosssos`e	89	.............................................T...........................................	osssfssojsosssssojsjo\joosssssssojssfossss`Ms\sooeoVesssssoojsooosjssRsosjsesoss\sossjVos	62	........................................*.....................	Rs`sJesossssssWossojsaVssfsossosjoosjoksmWfjssRssssaosHs\sojsj	76	..............................................A............................,	sssVsss`ossosssjssssosos`VjsssssssssssossejsssosssessssoosVsesoMsVossojsjsss
-Chromosome5	234828751	C	20	...................a	sksss\sjsss`sojjskWJ	34	.....A....................A.......	ssssoWssssosojWsVjssjsssoossssssj`	89	................................................................A........................	sjsoVsssVssssosssoosjMsojskefssossokeossssWMsVsosksMssssoosVasoosssVs\jjssfosossossososso	62	..............................................................	RsssassjossssVWsssosssossssRoosso`ssoeVssaosesRossososasWsess\	76	............................A..............................................,	sesRseskofossosossosVsssV`eooossssssssssskkssssjsssojssjss\ssss9jkssossssoss
-Chromosome5	234828756	C	20	...................,	sossssokssss\osVssjJ	34	............................T.....	oosssRssssjssooeRssjssososssossosa	89	......................................................................................A.T	ssj`esssossssssssoosaaoossssRsoosssoosesssWssRsssjsooossssssssjoossVsosossssssssjssss9ajo	62	.................TT.....................T.....................	fssssjssssssssRssVjjssossosRosssssssssosaookssasssosss\sVs`sos	76	....A......................................................................,	sssNssjMofjossessoksssjsosssosssjsssssssssessskssssssssososssos5sssssseossss
-Chromosome5	234828761	G	20	...................,	sksssjsossssosjjssIJ	34	....................T.............	osssefsossojsjssVsssesssoossssssV`	89	..T......................................................T...............................	soj`osssosssssssssssjjksssssosossessssssssf\sjsssososssoosssfssosssosVskskoesssssssssMojs	62	....................................T.........................	VsssjssssssossVssesssjossVsosjsssssssVjoossjssjsssjs`sosjo`oss	76	.......................................T....T..............................,	sssasssfjjsooossssssssssjWssssssssssossssj`sssjssssssssjssossssassssssssssss
-Chromosome5	234872924	G	1	.	s	0	*	*	1	a	F	0	*	*	2	,A	Js
-Chromosome5	234895909	G	1	.-2CA	:	1	.-2CA	;	0	*	*	1	.-2CA	:	0	*	*
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-Chromosome5	256727580	G	0	*	*	0	*	*	2	,+4tgta,+4tgta	:9	1	,+4tgtc	8	2	,+4tgtc,+4tgtc	88
-Chromosome5	256775027	A	0	*	*	5	.....	JsJJJ	3	..+3GAG.	J:s	3	..+3GAG.	J:J	0	*	*
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-Chromosome5	263906279	C	0	*	*	3	.GG	AJs	1	G	J	3	...	JJJ	0	*	*
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-Chromosome5	263906295	A	0	*	*	3	.C.	<JC	1	C	J	3	...	JJJ	0	*	*
-Chromosome5	263906584	G	0	*	*	2	t,	JJ	1	t	J	3	,,,	FJF	0	*	*
-Chromosome5	263906609	T	0	*	*	2	a,	JF	1	a	J	3	,,,	7F7	0	*	*
-Chromosome5	263906616	G	0	*	*	2	a,	JF	1	a	J	3	,,,	FJJ	0	*	*
-Chromosome5	263906625	G	0	*	*	2	a,	JA	1	a	J	3	,,,	JJJ	0	*	*
-Chromosome5	263906627	G	0	*	*	2	t,	J7	1	t	J	3	,,,	<JJ	0	*	*
-Chromosome5	263906635	G	0	*	*	2	a,	JF	1	a	J	3	,,,	AJJ	0	*	*
-Chromosome5	264030199	A	0	*	*	1	.-1T	J	1	.-1T	s	1	.-1T	s	0	*	*
-Chromosome5	264034526	C	1	,	J	1	t	A	0	*	*	0	*	*	3	g,,	8AJ
-Chromosome5	264091323	C	1	,	J	0	*	*	2	G.	JJ	1	T	f	0	*	*
-Chromosome5	264098708	A	1	.	F	0	*	*	1	T	J	2	T.	JF	5	TTT.T	JJJJA
-Chromosome5	264114160	C	0	*	*	1	.	o	2	.T	si	3	..*	jjE	0	*	*
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-Chromosome5	264528644	G	3	C..	JJJ	1	.	J	2	.C	JJ	1	C	J	0	*	*
-Chromosome5	264878001	C	1	t	A	3	..,	ssJ	5	,,,tt	J<7JJ	5	t,,,,	FJJJJ	4	,tt,	FJFJ
-Chromosome5	264912693	C	0	*	*	1	T	F	0	*	*	1	.	J	2	.T	AJ
-Chromosome5	264944249	G	1	A	J	0	*	*	2	.A	7J	1	.	J	0	*	*
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-Chromosome5	264944257	C	1	.-1A	J	0	*	*	2	..-1A	7J	1	.	J	0	*	*
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-Chromosome5	264944421	C	1	g	J	0	*	*	2	g,	JJ	1	,	F	0	*	*
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-Chromosome5	264952245	C	0	*	*	0	*	*	1	.-1A	J	1	.-1A	o	1	.	J
-Chromosome5	264993026	G	1	.	o	0	*	*	0	*	*	2	,A	ss	1	A	s
-Chromosome5	265001384	G	2	A.	ss	1	.	s	0	*	*	3	..a	oWF	0	*	*
-Chromosome5	265149987	G	0	*	*	1	,	F	3	ttt	JJJ	0	*	*	2	,t	JJ
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-Chromosome5	265253144	A	1	.	J	0	*	*	0	*	*	5	...C.	JJJJJ	1	C	J
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-Chromosome5	265496218	C	2	..	JJ	5	..T..	JJJJJ	4	T...	JJJJ	2	.T	JJ	5	..T..	JJJJF
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-Chromosome5	265621239	C	1	a	F	0	*	*	2	,,	JJ	0	*	*	4	,g,,	FJFJ
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-Chromosome5	265734412	G	0	*	*	1	A	J	4	.AA.	oJJJ	0	*	*	2	..	Jo
-Chromosome5	265734434	C	0	*	*	1	A	F	4	.AAA	sJJJ	0	*	*	2	A.	Js
-Chromosome5	265775613	A	19	.C...CC.....C...CCC	JFFJJJJJJAJJFJJJJJJ	10	..CC......	JJJJJFFJJJ	9	C.C.....C	JJJJAFJJJ	6	C.....	FJJJJA	20	.............C....C.	JJJFJJAJFJJJFJAJ<J<7
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-Chromosome5	266386913	A	1	.-2GT	J	0	*	*	0	*	*	1	.-2GT	J	2	.-2GT.	JJ
-Chromosome5	266386936	T	1	.-5GTACG	[	0	*	*	0	*	*	1	.-5GTACG	<	2	.-5GTACG.-5GTACG	[[
-Chromosome5	266586755	C	0	*	*	2	.+9GGAGGGGGT,	`W	1	,+9ggagagggt	J	1	t	J	0	*	*
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-Chromosome5	266984365	A	1	.-3TGT	J	0	*	*	1	.-3TGT	J	0	*	*	1	.-3TGT	F
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-Chromosome5	267511728	T	5	GG...	JJoAJ	7	..G....	VJJ\JsA	2	G.	Jo	7	,,.G.G,	osVJVJs	4	,GG.	\JJ6
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-Chromosome5	267522175	T	0	*	*	1	,-2tc	:	1	.	F	1	.-2TC	:	0	*	*
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-Chromosome5	267522315	T	2	,,	JJ	4	ccc.	JFJj	5	,,,c,	JJJF<	2	c,	JF	3	cc,	JJJ
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-Chromosome5	267624486	C	1	a	J	3	..T	JoV	0	*	*	0	*	*	3	...	Jos
-Chromosome5	267624491	G	1	,	J	3	A..	Jso	0	*	*	0	*	*	3	A..	Jjs
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-Chromosome5	267659349	G	3	,,,	7JA	2	,a	JJ	2	,a	JJ	4	,,a,	J7J<	3	,aa	JJ7
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-Chromosome5	267856751	T	0	*	*	2	.c	sJ	0	*	*	1	.	s	2	c,	JJ
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-Chromosome5	267914352	T	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,-2aa	J
-Chromosome5	267971212	C	0	*	*	3	..t	oos	1	.	W	0	*	*	1	T	o
-Chromosome5	267971265	C	0	*	*	3	AA,	ses	1	A	9	0	*	*	1	.	o
-Chromosome5	267974229	G	0	*	*	1	.-2CT	s	1	,-2ct	J	1	,-2ct	J	2	,-2ct,-2ct	JJ
-Chromosome5	268075626	C	1	.-1T	E	0	*	*	0	*	*	2	.-1T.-1T	FF	3	.-1T.-1T.-1T	HFF
-Chromosome5	268075763	T	1	,	F	0	*	*	0	*	*	2	,,-2tc	J5	3	,,,-2tc	J75
-Chromosome5	268075764	T	1	,	F	0	*	*	0	*	*	2	,*	JJ	3	,,*	JFJ
-Chromosome5	268075765	C	1	,	F	0	*	*	0	*	*	2	,*	JJ	3	,,*	AJJ
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-Chromosome5	268411339	G	0	*	*	0	*	*	1	.-1A	A	1	.	J	1	.-1A	J
-Chromosome5	268411785	A	0	*	*	0	*	*	1	,-1c	A	1	,	7	1	,-1c	J
-Chromosome5	268488716	A	0	*	*	1	C	<	1	.	<	2	.+1C.+1C	FH	0	*	*
-Chromosome5	268489143	C	0	*	*	1	,	J	2	,-3att,	JA	2	,-3att,-3att	JJ	0	*	*
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-Chromosome5	268557180	C	2	a,	<J	1	a	J	0	*	*	1	,	J	0	*	*
-Chromosome5	268687114	A	1	,	F	0	*	*	1	t	J	0	*	*	2	ct	JJ
-Chromosome5	269012162	G	1	.-1T	J	3	.+1T.T	FJs	0	*	*	0	*	*	1	.-1T	J
-Chromosome5	269012355	C	2	a,	JJ	2	,a	JJ	0	*	*	0	*	*	1	a	J
-Chromosome5	269015612	G	19	,,,,,,c,,,ccc,,,c,,	J7AFFFJJFJJJJJFJ<J7	6	C,.,,c	kAsJFJ	19	...c,,,,c,c,,,c,c,c	sssJAFJJJJJJ7JF<JF7	18	C,,C.,,,,,,,,,c,c,	oJJssF<JJJFFJJJJ7a	19	,,,,,,,,,ccccccc,,,	J7JFJJFFFJFJJJJJJAJ
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-Chromosome6	3494201	G	1	a	6	0	*	*	2	,,	JJ	0	*	*	2	,a	J7
-Chromosome6	3519184	T	1	C	V	2	**	ee	0	*	*	1	,	J	2	.C	kR
-Chromosome6	3535905	G	1	.	J	3	AA.	FJJ	2	.A	JJ	1	A	J	0	*	*
-Chromosome6	3535912	C	1	.	J	2	T.	FJ	2	.T	JJ	1	T	J	0	*	*
-Chromosome6	3535925	C	1	.	J	3	GG.	FJJ	2	.G	JJ	1	G	J	0	*	*
-Chromosome6	3535971	C	1	.	s	3	TT.	Fjs	2	.T	oq	1	T	q	0	*	*
-Chromosome6	3535988	A	1	.	o	3	CC.	Hfj	2	.C	Vo	1	C	s	0	*	*
-Chromosome6	3536016	A	1	,	J	3	CC.	9Rs	2	C,	sJ	1	C	s	0	*	*
-Chromosome6	3573742	C	1	,	F	0	*	*	2	,g	JJ	0	*	*	1	g	J
-Chromosome6	3573746	A	1	,	J	0	*	*	2	,g	7J	0	*	*	1	g	J
-Chromosome6	3574782	T	1	.	J	0	*	*	1	A	J	0	*	*	3	AA.	JJF
-Chromosome6	3579673	C	2	.T	JJ	0	*	*	0	*	*	1	.	A	1	T	F
-Chromosome6	3654284	C	0	*	*	1	.	J	0	*	*	4	T...	JJJJ	3	.T.	JJJ
-Chromosome6	3654296	T	0	*	*	1	.	J	0	*	*	5	C....	JJJJJ	3	.C.	JJJ
-Chromosome6	3654308	G	0	*	*	1	.	J	0	*	*	5	A....	JJJJJ	3	.A.	JJJ
-Chromosome6	3654343	T	0	*	*	1	.	s	0	*	*	5	C....	`oAoa	3	.C.	sso
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-Chromosome6	3654353	A	0	*	*	1	.	s	0	*	*	5	.-1T....	asosk	3	..-1T.	sss
-Chromosome6	3654387	G	0	*	*	1	.	s	0	*	*	5	..AA.	ssjsj	3	A..	sss
-Chromosome6	3654392	C	0	*	*	1	.	s	0	*	*	5	T....	ossss	3	.T.	sso
-Chromosome6	3654399	C	0	*	*	1	.	o	0	*	*	5	.T...	ssoss	3	..A	sso
-Chromosome6	3654404	T	0	*	*	1	.	s	0	*	*	5	A....	`sssj	3	.A.	sss
-Chromosome6	3654412	C	0	*	*	1	.	o	0	*	*	5	....T	sssoj	3	.A.	ssk
-Chromosome6	3718630	C	1	.	A	0	*	*	1	T	J	0	*	*	2	T.	JJ
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-Chromosome6	3936842	C	1	.	A	2	.T	JJ	0	*	*	1	T	J	0	*	*
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-Chromosome6	4079386	T	1	G	J	0	*	*	1	.	J	0	*	*	2	G.	JJ
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-Chromosome6	11872678	G	2	.T	JJ	3	..C	JJJ	1	.	J	2	.C	JJ	0	*	*
-Chromosome6	11872793	G	2	,,	77	4	,,A,	JJs7	0	*	*	2	,a	JJ	0	*	*
-Chromosome6	12033970	A	2	.G	AA	0	*	*	2	..	JF	0	*	*	3	.G.	JJ7
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-Chromosome6	15345980	C	50	......,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	CssosjAFJ<JJJJJJJJJJJAFJJ7JAJJJJ<JJJJJJJJAFJJFJJJJ	60	....,.,.,...,,.,.,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,t,,,,	sfsaAsssJssoJFsJsJJFAJJJJJ7JJJJFJFJJJJ<JJJJJFJJFJJFJFJJJJ7JA	72	..,,,.....,.,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,	sjJJJssassFsJJJJJJJJFJJJJJJJJJFJJJJJJJJJJJJJJJFJJJJJFJJF<JJJ7JJJAFJJJJJF	41	.,,......,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,	sJJsossssJ7JJJJJFJJJFJJFJJFJFJJJJFJJJJAAA	89	.$......,,,,.,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	<ssssRsJJJJJFJFJJJF7JJ<FJFJFJFJJJJJJJJFJJJFJJJJJJJJJJFJJJJJJAJJJJJFJJJJJJJJJJJJJJJJJJJJJJ
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-Chromosome6	23647465	G	0	*	*	0	*	*	2	,a	JJ	1	a	J	1	,	J
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-Chromosome6	23712651	A	1	,-1t	<	2	,-1t,-1t	JJ	2	,-1t,-1t	JJ	1	,-1t	F	0	*	*
-Chromosome6	23815442	C	0	*	*	2	.T	JJ	1	.	o	1	T	s	0	*	*
-Chromosome6	23815458	G	0	*	*	2	.A	JA	1	.	j	1	A	s	0	*	*
-Chromosome6	23815523	C	0	*	*	2	.A	Ja	1	,	J	1	A	s	0	*	*
-Chromosome6	23815528	C	0	*	*	2	.T	Fo	1	,	J	1	T	Q	0	*	*
-Chromosome6	23962162	A	10	,-2tt,-1t,,,t,,+2tt,,+1t	JJJJJJJJJJ	13	..,-1t,,,t,tt,+1t,.	ssJFJJJFJFJJs	18	.,,,,,,,,,,+1t,,+3ttt,,,,-1t,	jJJJJJJJJJJFJJJJss	6	.,,,,.	VJJJFj	24	...,,t,,,,,,,,,,,,,,,,,,	sssJJJJJJJJJJJJJJJJJJJJJ
-Chromosome6	24413264	T	3	.C.	JJJ	3	...	JJJ	3	C..	FJJ	0	*	*	3	.C.	JJJ
-Chromosome6	24739831	T	1	.-1C	H	1	.-1C	H	0	*	*	0	*	*	2	.-1C.-1C	HH
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-Chromosome6	25027267	C	4	..TT	JJJJ	2	TA	oJ	0	*	*	0	*	*	2	.A	JJ
-Chromosome6	25117287	G	2	.-5CTACC.-5CTACC	JJ	1	.-5CTACC	J	0	*	*	0	*	*	1	.-5CTACC	F
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-Chromosome6	31662771	G	3	aa,	FJF	0	*	*	1	,	J	1	a	J	0	*	*
-Chromosome6	31679887	C	2	,,	JJ	0	*	*	2	t,	JJ	0	*	*	1	t	J
-Chromosome6	31749326	C	5	,,,t,	JJJJJ	1	,	7	4	,t,,	A7J7	0	*	*	6	,,,,,t	F<JJJF
-Chromosome6	31749392	C	5	tt,tt	JJJJJ	1	t	A	3	tt,	JJ7	0	*	*	6	t,t,tt	JJJJJ<
-Chromosome6	31751623	T	0	*	*	0	*	*	3	.-1A.-3AAA.	JAJ	2	.-1A.	FF	1	.-1A	J
-Chromosome6	31822439	G	2	A.	JJ	0	*	*	0	*	*	1	A	J	1	.	J
-Chromosome6	31822474	T	2	G.	A7	0	*	*	0	*	*	1	G	J	1	.	F
-Chromosome6	31822614	C	2	t,	JJ	0	*	*	0	*	*	2	T,	VJ	1	,	J
-Chromosome6	31822645	G	2	t,	FJ	0	*	*	0	*	*	2	T$,	RJ	1	,	J
-Chromosome6	31892462	C	1	,-1t	J	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*
-Chromosome6	31976858	G	0	*	*	2	.A	Js	0	*	*	1	.	o	1	A	o
-Chromosome6	32012853	T	1	,	F	2	,,-5gggag	JF	0	*	*	0	*	*	1	.-5GGGAG	s
-Chromosome6	32016211	G	0	*	*	0	*	*	1	.	J	2	.T	Fs	2	TT	7F
-Chromosome6	32191943	A	1	.	J	2	.G	JF	1	G	J	0	*	*	0	*	*
-Chromosome6	32191983	C	1	A	J	2	.*	JJ	1	.	J	0	*	*	0	*	*
-Chromosome6	32244504	G	1	a	J	0	*	*	2	,a	FF	4	,,,a	AFJJ	4	,,,,	JJJJ
-Chromosome6	32303012	A	2	G.	JJ	1	.	J	2	CG	JJ	0	*	*	0	*	*
-Chromosome6	32303251	C	2	,-1a,-1a	JJ	1	,-1a	J	1	,-1a	J	0	*	*	0	*	*
-Chromosome6	32741478	T	0	*	*	2	.C	JJ	2	.C	sJ	1	C	F	0	*	*
-Chromosome6	32741508	C	0	*	*	2	.T	J<	2	.T	sJ	1	T	7	0	*	*
-Chromosome6	32760816	C	2	,,-1a	JJ	1	,-1a	J	0	*	*	1	,	F	1	,-1a	J
-Chromosome6	32923500	G	2	,t	JF	1	t	F	0	*	*	0	*	*	2	t,	JJ
-Chromosome6	33027686	T	2	.-1C.-1C	JJ	0	*	*	1	.-1C	J	2	.-1C.-1C	FJ	0	*	*
-Chromosome6	33190764	G	0	*	*	0	*	*	2	..	JJ	2	.A	JJ	1	A	J
-Chromosome6	33264294	G	1	A	s	1	,	J	0	*	*	2	A.	os	0	*	*
-Chromosome6	33438056	C	0	*	*	0	*	*	2	t,	AJ	1	,	J	1	T	O
-Chromosome6	33524795	G	1	a	F	1	.	o	0	*	*	0	*	*	3	.aa	sF7
-Chromosome6	33531169	G	1	A	J	0	*	*	2	.A	J7	0	*	*	2	..	JF
-Chromosome6	33619090	G	1	.-2AA	J	1	.	J	0	*	*	0	*	*	1	.-1A	J
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-Chromosome6	33619213	A	0	*	*	1	.	J	0	*	*	2	*,	rJ	1	*	I
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-Chromosome6	33619216	A	0	*	*	1	.	F	0	*	*	2	*g	rJ	1	*	I
-Chromosome6	33727537	A	2	..+1G	JJ	4	.+1G.+1G.+1G.	J7FF	0	*	*	3	.+5GGGGG.+3GGG.+2GG	JFJ	5	.+2GG.+1G..+2GG.+7GGGGGGG	FJJJJ
-Chromosome6	33758514	A	1	,-1t	J	0	*	*	1	,-1t	J	2	,-1t,-1t	JJ	0	*	*
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-Chromosome6	33773193	G	0	*	*	0	*	*	3	a,,	JJF	1	A	o	2	,,	JJ
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-Chromosome6	33773201	G	0	*	*	0	*	*	3	,aa	JFJ	1	.	s	2	aa	J7
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-Chromosome6	33773229	A	0	*	*	0	*	*	3	,gg	JJJ	1	.	s	2	g,	JJ
-Chromosome6	34115239	A	1	T	J	0	*	*	3	..T	JJJ	1	.	J	3	..T	JFJ
-Chromosome6	34349634	T	0	*	*	1	C	J	2	.C	JJ	1	.	J	0	*	*
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-Chromosome6	34508365	G	0	*	*	1	A	J	1	.	J	0	*	*	3	A..	JFJ
-Chromosome6	34637880	T	0	*	*	2	a,	JJ	1	a	J	2	,,	JJ	0	*	*
-Chromosome6	34637884	T	0	*	*	2	c,	JJ	1	c	J	2	,,	JJ	0	*	*
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-Chromosome6	34710474	A	1	,-4agct	@	0	*	*	1	,-4agct	@	1	,	J	0	*	*
-Chromosome6	34723262	C	2	t,	JJ	1	,	J	0	*	*	0	*	*	1	t	J
-Chromosome6	34723272	G	2	c,	JJ	1	,	J	0	*	*	0	*	*	1	c	A
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-Chromosome6	34849594	T	1	.-1A	<	1	.-1A	<	0	*	*	0	*	*	2	.-1A.	JJ
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-Chromosome6	34849988	A	1	g	J	2	,g	JF	0	*	*	0	*	*	2	,,	JJ
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-Chromosome6	35497682	A	0	*	*	2	.T	Js	1	.	J	1	T	J	0	*	*
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-Chromosome6	35791750	A	0	*	*	1	g	J	1	,	J	0	*	*	3	g,,	8FF
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-Chromosome6	36014110	C	1	T	s	1	.	o	3	TT.	sjJ	0	*	*	0	*	*
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-Chromosome6	36602331	T	3	C..	GsA	0	*	*	2	.C	sF	1	C	G	3	..C	FFF
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-Chromosome6	36728447	A	1	.-4TGAT	[	0	*	*	1	.-4TGAT	[	1	.	P	0	*	*
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-Chromosome6	37544523	C	0	*	*	1	.-3CTT	Y	1	.-3CTT	Y	0	*	*	1	.-3CTT	Y
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-Chromosome6	37858196	G	15	.............AA	JJJJJJJJJJJJJJJ	8	...A....	FJJJJ8JJ	18	.A................	JJJJJJJJJJJJJ<JJJJ	11	...........	JFJJJJJJJJJ	17	....A............	JJJJJJJJFJJJJJJJJ
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-Chromosome6	38030852	T	1	.	J	0	*	*	2	cC	sJ	0	*	*	2	.C	JJ
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-Chromosome6	39315654	G	3	.C.	JJJ	1	.	J	0	*	*	2	CC	JJ	2	.C	JJ
-Chromosome6	39316961	C	0	*	*	1	.	s	2	,g	J<	1	g	J	0	*	*
-Chromosome6	39423174	T	79	CCc.ccc,,c,ccc,cccc,,ccc,,,c,ccc,,,ccc,,cc,cc,ccccc,,ccc,,cc,cc,ccccccccccccccc	esJsJJJJJ7JFJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJ<JFJJJJJJJJJJJJJJJJJJJJJFJJJJJss	141	C$,cccc,cc,,,,,c,cccccc,,c,c,,,ccc,ccc,ccccc,,cc,,c,,cccccccc,ccc,,c,cc,c,,ccc,ccc,c,,,,,ccc,ccc,,c,c,cccc,cc,ccccc,ccc,cccc,ccc,,ccc,CcCCcCC.	JFAJJFJJJJJJJJJJFJJJJJJFFJFJJJJJJJJJJJJAJJJJJJF7JJJJJJJJJJJJJAJFJ<JFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJoJo`Jsso	169	.cc.,ccc,,c,cc,,,cc,ccc,ccccccccccccc,c,cccccccccccc,,cc,,ccc,c,c,ccccccc,,,,cccccccccc,cc,cccccccc,ccc,,,cc,ccccc,,cc,,ccc,cccc,,,c,c,,,ccc,,c,,c,ccccccccccccc,,cc.,C.C	sJJsJJJFJJJJJJJJAJJJJJFJJJJJJJJJFJFJJJJ<JJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJFJJJJJJJJJJJAJJJJJJJJJJJJJJAJJFJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJo7oFsss	174	C$.C,,CccCc,C,c,ccc,Cc,cc,c,c,ccc,c,,cccc,,ccc,cc,c,,,cccccc,,cccc,,cccccc,c,,,cc,,ccccc,ccccc,,ccc,,,cc,cccc,,cc,,ccccc,c,,,ccc,ccccc,c,cc,c,ccccc,ccc,,,cc,c,cccc,,C,,.CCCccC	JofF<sJJ\JJsJFJJFJFsJFJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJF7JJJJJFFJJJJJJJFJJJJJJJJJJJJJJJJJJAJJJ<JJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJossssssJos	150	cc,,cccc,cccccccc,c,ccccccc,c,c,,cc,c,ccc,,cccc,cc,cccc,cccccccccc,c,c,cccccc,c,cccccccccccc,ccc,c,cc,cc,c,ccccc,,ccccc,ccc,ccccccc,,,cc,cccccccc,CCcc	JJJJJFJJFJJFJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJ<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJAJJJJJJFJJFJJJJ<JJJJJJJJJJJJJAJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJsRFA
-Chromosome6	39423443	G	2	.-2AA.-2AA	dW	0	*	*	0	*	*	1	.-2AA	[	2	.-2AA.-2AA	[W
-Chromosome6	39453233	A	0	*	*	1	g	J	2	,g	JJ	1	,	F	0	*	*
-Chromosome6	39453252	T	0	*	*	1	c	J	2	,c	AJ	1	,	A	0	*	*
-Chromosome6	39693205	T	2	.C	JJ	0	*	*	1	.	F	1	C	F	0	*	*
-Chromosome6	39730740	A	1	.-9CGCCAGCAC	8	0	*	*	1	.-9CGCCAGCAC	8	0	*	*	1	.-9CGCCAGCAC	D
-Chromosome6	39803156	G	1	,-8caacattt	J	0	*	*	0	*	*	1	,-8caacattt	J	1	.-8CAACATTT	s
-Chromosome6	39824216	A	3	,$,$c	>>J	0	*	*	4	C...	JAAA	1	C	s	0	*	*
-Chromosome6	39824258	C	1	,	J	0	*	*	3	.-3GGT..	9JJ	1	.-3GGT	o	0	*	*
-Chromosome6	39824524	C	0	*	*	1	.	\	0	*	*	1	T	J	4	TTT.	JA7J
-Chromosome6	39912612	A	1	.-1G	7	1	.-1G	J	0	*	*	0	*	*	1	.-1G	F
-Chromosome6	39913717	C	2	T,	JJ	1	t	s	0	*	*	1	.	J	0	*	*
-Chromosome6	39913737	G	2	C,	FA	1	t	s	0	*	*	1	.	A	0	*	*
-Chromosome6	39913754	C	2	T,	JJ	1	t	s	0	*	*	1	.	o	0	*	*
-Chromosome6	39913781	C	2	T,	JJ	1	*	s	0	*	*	1	.	s	0	*	*
-Chromosome6	39975066	A	0	*	*	0	*	*	2	.-1C.-1C	JJ	1	.-1C	F	1	.-1C	J
-Chromosome6	40061545	T	1	,-1g	F	0	*	*	0	*	*	1	,	J	1	,-1g	J
-Chromosome6	40070999	T	0	*	*	2	,A	Fs	2	,G	Js	2	.g	s7	0	*	*
-Chromosome6	40071005	G	0	*	*	2	,C	Js	2	,A	Js	1	.	s	0	*	*
-Chromosome6	40071009	T	0	*	*	2	,C	Js	2	,C	Js	1	.	s	0	*	*
-Chromosome6	40071022	C	0	*	*	2	a.	Js	2	a.	Js	2	.,	s7	0	*	*
-Chromosome6	40071027	T	0	*	*	2	,C	Js	2	,C	Jo	2	.c	sJ	0	*	*
-Chromosome6	40071037	C	0	*	*	2	,T	Js	2	,T	Js	1	.	s	0	*	*
-Chromosome6	40071228	G	1	A	s	0	*	*	2	A.	as	0	*	*	1	.	s
-Chromosome6	40075319	T	0	*	*	1	.-1G	J	1	.-1G	J	0	*	*	1	.	J
-Chromosome6	40129093	A	0	*	*	1	,	k	2	,-1t,-1t	MM	0	*	*	1	.-1T	M
-Chromosome6	40194679	T	4	,ccc	JJJJ	1	c	J	2	c,	JJ	0	*	*	5	.,,,c	sFFJJ
-Chromosome6	40385506	C	1	T	A	2	A.	JJ	0	*	*	0	*	*	1	.	J
-Chromosome6	40385510	T	1	.	J	2	..-1G	JJ	0	*	*	0	*	*	1	.-1G	J
-Chromosome6	40385511	G	1	.	F	2	.*	JJ	0	*	*	0	*	*	1	*	J
-Chromosome6	40385551	C	1	T	J	2	T.	JJ	0	*	*	0	*	*	1	.	J
-Chromosome6	40385564	G	1	.	A	2	.A	JJ	0	*	*	0	*	*	1	A	J
-Chromosome6	40385575	C	1	.	F	2	.G	JA	0	*	*	0	*	*	1	G	J
-Chromosome6	40385641	C	1	A	@	2	.t	sJ	0	*	*	0	*	*	1	t	J
-Chromosome6	40385709	G	1	,	F	2	a,	JJ	0	*	*	0	*	*	1	a	A
-Chromosome6	40675865	G	2	A.	JF	1	.	s	0	*	*	1	A	?	0	*	*
-Chromosome6	40675901	C	2	T.	FJ	1	.	s	0	*	*	1	T	J	0	*	*
-Chromosome6	40691042	A	4	.GG.	FFFF	10	.G.....G..	FFFFFFFFFF	11	G...G.....G	FFFFFFFFAFA	16	........G.......	JFFFAFFFFFF9FFFA	14	..............	FFFFFFFFFFFFFF
-Chromosome6	40691063	C	4	....	JJJJ	11	.........T.	JJJJJJJJJJJ	11	.TT.....T..	JJJJJJJJFJF	16	......T........T	JJJJFJJJJJJJJJJA	14	......T..TT.T.	JJJJJJJJJJJJ7J
-Chromosome6	40691273	T	4	,,,,	JJJJ	10	,,c,,,,,,,	JJJJJFJJJJ	10	c,,,,,,,,,	JJJJJJJJJJ	16	,c,,,,,c,,,,,,,,	JFJJJJJJJJJJJJJJ	14	c,,,,,,,,,,,,,	JJJJJJJJFJJJJJ
-Chromosome6	40691280	A	4	g,g,	JJJJ	10	,$,,gg,ggg,	AJFJJJJJJJ	10	,,,,gg,,,g	JJJJJJJJJJ	16	,,g,,,g,,g,,,,,,	JAJJJJJJJJJJJJJJ	13	,,,,,,,,,,g,g	JJJJFJJFFJJJF
-Chromosome6	40898415	C	5	..+1T..+1T.+1T	ososs	6	....+1T..	sas\oe	8	..+1T.+1T.+1T..+1T..	eJjsssos	10	......+1T....-1T	soHossssjs	6	.....+1T.	skssss
-Chromosome6	40898428	A	5	...+1T..	o\kso	7	...+1T.+1T..+1T,+1t	sCs7oeF	10	.+2TT.+1T.+1T.+1T...+1T.,+1t,+1t	ssJJVorsJJ	11	...+1T.+1T..+1T.+1T..+1T.,+1t	sjsosJos`jJ	7	.+1T.+1T...+1T.,+1t	ssjfJsJ
-Chromosome6	40898639	T	3	..-4GATC.	oJs	5	.-4GATC...-4GATC.	IssIj	7	...-4GATC.-4GATC..-4GATC.	ssIIsIs	14	.........-4GATC.-4GATC.-4GATC..-4GATC.-4GATC	esssjfssIIIJII	5	....-4GATC.	sosIs
-Chromosome6	40898640	G	3	.*.	s@s	5	*..*.	IssIo	7	..**.*.	ssIIoIs	14	........***.**	ksssVassIIIAII	5	...*.	sf`Is
-Chromosome6	40898641	A	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	ssIIkIs	14	........***.**	ssssasssIIIJII	5	...*.	sooIs
-Chromosome6	40898642	T	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	ssII\Is	14	........***.**	ssssWossIIIJII	5	...*.	ssoIs
-Chromosome6	40898643	C	3	.*.	s@s	5	*..*.	IssIs	7	..**.*.	osIIWIs	14	........***.**	osssHsssIIIJII	5	.A.*.	sssIs
-Chromosome6	40899317	G	7	.....A.	JJJJJJJ	8	.AA.A...	JJJJJJJJ	9	..A.A..AA	JJJJJJJJJ	3	.A.	JJJ	12	A..A.AA....A	JJJJJJJJJJJJ
-Chromosome6	40899410	C	7	.......	JFJAJJJ	8	.AA.A...	sJJJ`JJJ	9	........A	JJJJJJJJJ	4	...A	JJJV	13	T....AA....A.	FJJJJJJJFJJJo
-Chromosome6	40899433	A	7	.+1T.+1T.-1T...+1T.	7FJ7JFA	7	....+1T.-1T..-1T	s7JsJJo	9	.-1T..+1T.+1T..+2TT.-1T..+1T	FJ<JJJJFJ	7	..+1T..+1T.-1T.+1T.	FJJ`JJJ	13	...+1T.+1T..+1T.+1T.+1T....+1T.-2TT	JJJJ7J7FJJJJs
-Chromosome6	40899671	C	12	..T.........	7JJJJJJFJJJJ	5	TT...	JJJJJ	13	....T........	JJJJAJJJJJJJJ	2	..	JJ	15	.......TT...t..	FJJJJJJA7JJJjss
-Chromosome6	40927939	T	1	.	V	0	*	*	0	*	*	2	,-1c,-1c	66	3	,-1c,-1c,	66s
-Chromosome6	40927940	C	1	.	o	0	*	*	0	*	*	2	**	55	3	**,	55s
-Chromosome6	40927942	T	1	.	V	0	*	*	0	*	*	2	gg	55	3	gg,	55s
-Chromosome6	40927946	C	1	.	o	0	*	*	0	*	*	1	g	J	3	gg,	AJs
-Chromosome6	40942132	A	1	T	J	4	...T	JJJJ	0	*	*	1	.	J	0	*	*
-Chromosome6	40942158	G	1	T	J	4	..T.	JJJJ	0	*	*	1	.	A	0	*	*
-Chromosome6	40942220	G	1	,	J	4	,t,,	JJJJ	0	*	*	1	a	J	0	*	*
-Chromosome6	40942234	C	1	a	J	4	t,,,	JJJJ	0	*	*	1	,	F	0	*	*
-Chromosome6	40942258	T	1	c	J	4	,,,c	JAFJ	0	*	*	1	,	J	0	*	*
-Chromosome6	41015155	G	0	*	*	0	*	*	2	.-1A.-1A	JJ	1	.-1A	J	1	.	J
-Chromosome6	41064600	G	1	.	J	0	*	*	3	C..	AJJ	0	*	*	1	C	J
-Chromosome6	41064606	G	1	.	J	0	*	*	3	C..	7JJ	0	*	*	1	C	J
-Chromosome6	41064723	A	1	,	J	0	*	*	3	t,,	JFJ	0	*	*	1	t	J
-Chromosome6	41064810	A	1	,	J	0	*	*	3	t,,	JJJ	0	*	*	1	t	J
-Chromosome6	41064813	A	1	,	J	0	*	*	3	c,,	JJJ	0	*	*	1	c	J
-Chromosome6	41064828	G	1	,	J	0	*	*	3	a,,	JJJ	0	*	*	1	a	J
-Chromosome6	41083554	G	0	*	*	0	*	*	1	,	J	2	T.	ss	1	t	A
-Chromosome6	41174158	T	2	.c	<F	1	c	<	1	.	J	0	*	*	0	*	*
-Chromosome6	41426795	C	0	*	*	1	t	J	1	,	F	0	*	*	3	,t,	JJA
-Chromosome6	41430207	T	4	.C..	osos	3	..C	oeo	2	CC	s`	3	..C	sss	1	.	V
-Chromosome6	41487899	C	1	,-7ttgccag	;	0	*	*	1	,-7ttgccag	;	0	*	*	1	,	F
-Chromosome6	41570494	T	1	.-1C	J	0	*	*	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome6	41648271	C	1	,	J	1	G	f	0	*	*	2	.G	sJ	0	*	*
-Chromosome6	41804056	A	0	*	*	0	*	*	6	..G..G	jsseos	1	G	`	3	G..	sFs
-Chromosome6	41822339	G	0	*	*	2	..	JJ	2	AT	JJ	0	*	*	2	.A	JJ
-Chromosome6	41903789	A	0	*	*	1	.-5AGCCC	I	0	*	*	1	.-5AGCCC	I	1	.-5AGCCC	I
-Chromosome6	42152323	T	1	.	J	1	.-5ATCCA	>	1	.-5ATCCA	<	0	*	*	0	*	*
-Chromosome6	42272725	T	0	*	*	1	.-8ACTTGTGC	J	1	.-8ACTTGTGC	J	0	*	*	1	.-8ACTTGTGC	J
-Chromosome6	42303413	G	0	*	*	2	.A	Js	0	*	*	2	..	JF	2	AA	JJ
-Chromosome6	42377525	C	1	.	J	2	.G	JJ	1	G	J	0	*	*	0	*	*
-Chromosome6	42377540	C	1	.	J	2	.A	AJ	1	A	J	0	*	*	0	*	*
-Chromosome6	42377559	G	1	.	J	2	.A	<J	1	A	J	0	*	*	0	*	*
-Chromosome6	42377602	C	1	.	s	2	.T	FA	1	T	J	0	*	*	0	*	*
-Chromosome6	42377608	A	1	.	s	2	.G	FJ	1	G	J	0	*	*	0	*	*
-Chromosome6	42377615	G	1	.	s	2	.A	7F	1	A	A	0	*	*	0	*	*
-Chromosome6	42500923	G	3	t,,	JJJ	2	,,	JF	0	*	*	2	,t	JJ	1	t	J
-Chromosome6	42502140	T	1	C	J	0	*	*	0	*	*	3	..C	AFJ	1	.	A
-Chromosome6	42503648	T	0	*	*	2	,,	FF	1	c	:	4	cc,.	::Fk	0	*	*
-Chromosome6	42512393	T	0	*	*	1	.	J	0	*	*	1	C	J	2	.C	JJ
-Chromosome6	42512446	C	0	*	*	1	T	o	0	*	*	1	.	s	2	.T	so
-Chromosome6	42512476	G	0	*	*	1	C	s	0	*	*	1	.	s	2	AC	ss
-Chromosome6	42644888	T	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,	<
-Chromosome6	42721489	G	0	*	*	4	.-8TTTAGGGT...	WJJJ	4	.-1TT.-1T.	FFJs	1	.-1T	J	6	.-1T..-1T.-1T..	sJJJJJ
-Chromosome6	42721539	T	0	*	*	4	....	eF7o	4	C...	oeoj	1	C	s	5	.G..C	oFsso
-Chromosome6	42722746	G	1	.	F	2	.A	FF	0	*	*	0	*	*	3	..A	AA>
-Chromosome6	42722768	G	1	.	J	2	..-2CA	JJ	0	*	*	0	*	*	3	...-2CA	J<J
-Chromosome6	42722777	C	1	.	J	1	T	J	0	*	*	0	*	*	2	T.	JJ
-Chromosome6	42722911	C	1	,	F	2	,t	JA	0	*	*	0	*	*	2	,t	FJ
-Chromosome6	42722972	A	1	,	J	1	t	F	0	*	*	0	*	*	3	,,t	<JJ
-Chromosome6	42722973	T	1	,	J	1	a	J	0	*	*	0	*	*	3	,,a	AJJ
-Chromosome6	42722984	A	1	,	J	1	g	A	0	*	*	0	*	*	3	,,g	FJJ
-Chromosome6	42723285	T	0	*	*	2	.-7TAGGGTC.	8J	0	*	*	2	.-7TAGGGTC.	6>	2	.-7TAGGGTC.	5J
-Chromosome6	42723306	T	0	*	*	2	..	8J	0	*	*	4	...C	sJ=F	3	..C	<sJ
-Chromosome6	42723310	G	0	*	*	2	..	85	0	*	*	3	..t	=IA	3	T..	<oJ
-Chromosome6	42723317	G	0	*	*	2	T,	aA	0	*	*	4	...,	soIA	3	CT.	sos
-Chromosome6	42723327	C	0	*	*	2	..	sd	0	*	*	5	..*.t	oRFPJ	3	..T	jss
-Chromosome6	42725005	T	0	*	*	1	.	J	2	.C	JJ	2	.C	Fj	0	*	*
-Chromosome6	42725088	G	0	*	*	1	A	k	2	..	`e	2	A.	jR	0	*	*
-Chromosome6	42725195	T	0	*	*	1	,	J	2	,-7tagggac,	>J	1	,-7tagggac	>	0	*	*
-Chromosome6	43008488	T	1	,	F	1	G	F	2	C.	JA	0	*	*	0	*	*
-Chromosome6	43081699	T	1	.-1C	J	0	*	*	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome6	43100878	T	1	c	J	3	.CC	sFJ	0	*	*	1	.	s	0	*	*
-Chromosome6	43173919	C	2	,,	FJ	0	*	*	4	t,,t	JJ7<	0	*	*	3	,t,	JJA
-Chromosome6	43173933	G	2	,+1t,+1t	JJ	0	*	*	4	,,+1t,+2tt,+3ttt	JJAA	0	*	*	2	,,+2tt	JF
-Chromosome6	43270968	C	1	G	o	0	*	*	0	*	*	2	,g	AF	1	,	A
-Chromosome6	43270974	T	1	.	s	0	*	*	0	*	*	2	c,	JJ	1	c	J
-Chromosome6	43371245	T	1	.-3TAG	;	0	*	*	2	..-3TAG	J;	1	.-3TAG	;	0	*	*
-Chromosome6	43371344	A	1	G	J	0	*	*	2	.G	JJ	2	.G	JJ	0	*	*
-Chromosome6	43371350	C	1	.	J	0	*	*	2	T.	JJ	2	T.	JF	0	*	*
-Chromosome6	43371448	C	1	,	J	0	*	*	2	,g	JJ	2	G,	jJ	0	*	*
-Chromosome6	43371449	A	1	,	J	0	*	*	2	,g	JJ	2	G,	sJ	0	*	*
-Chromosome6	43371451	T	1	,	J	0	*	*	2	,a	JJ	2	A,	oJ	0	*	*
-Chromosome6	43371486	C	1	,	J	0	*	*	2	,g	JJ	2	,g	JA	0	*	*
-Chromosome6	43371503	G	1	,	J	0	*	*	1	,-1c	J	1	,-1c	J	0	*	*
-Chromosome6	43424047	C	0	*	*	1	t	F	0	*	*	1	,	F	2	,t	JJ
-Chromosome6	43889789	A	1	,-5tactg	:	0	*	*	1	,-5tactg	:	0	*	*	1	,-5tactg	:
-Chromosome6	43910092	C	0	*	*	3	,+1ta,+1t	JJJ	0	*	*	1	a	A	2	,+1t,	JA
-Chromosome6	43915617	G	2	,+1t,+2tt	FJ	2	,+3ttt,+2tt	JJ	1	,+7ttttttt	J	2	,+1t,+1t	JF	0	*	*
-Chromosome6	43918315	T	0	*	*	0	*	*	2	..-2CC	JJ	1	.	s	1	.-2CC	J
-Chromosome6	43919272	T	0	*	*	0	*	*	1	.	s	2	G.	ss	1	G	o
-Chromosome6	43920123	A	0	*	*	1	.-2AG	H	2	.-4AGAG.-4AGAG	;;	2	.-2AG.-2AG	>>	0	*	*
-Chromosome6	43921429	T	0	*	*	1	.	J	0	*	*	2	a.	sJ	1	A	J
-Chromosome6	43921432	C	0	*	*	1	.	J	0	*	*	2	t.	oJ	1	A	J
-Chromosome6	43921467	C	0	*	*	1	.	J	0	*	*	2	t.	sJ	1	T	J
-Chromosome6	43969690	C	0	*	*	0	*	*	3	...	JJ7	1	T	J	5	...T.	<JJJJ
-Chromosome6	43969751	G	0	*	*	0	*	*	3	.A.	JJF	1	.	J	5	T....	JJJJJ
-Chromosome6	43969776	C	0	*	*	0	*	*	3	...	JJA	1	T	J	4	.AT.	FJJJ
-Chromosome6	43969929	T	0	*	*	0	*	*	3	,,,	JJF	1	c	F	5	,,,c,	7JJJJ
-Chromosome6	43970396	G	0	*	*	1	.	J	3	..-1A.	JJF	0	*	*	4	.-1A...	JJ<J
-Chromosome6	44010935	G	0	*	*	0	*	*	2	,,	JJ	3	a,,	JFJ	3	a,,	JJJ
-Chromosome6	44125233	A	0	*	*	0	*	*	3	,,g	JJJ	3	c,,	7JF	1	,	F
-Chromosome6	44125239	G	0	*	*	0	*	*	3	,,t	JJJ	3	t,,	<JA	1	,	F
-Chromosome6	44166817	C	0	*	*	1	.+1A	J	0	*	*	1	.-1A	J	1	.-1A	F
-Chromosome6	44607384	C	1	,	F	0	*	*	2	t,	JA	0	*	*	2	t,	AJ
-Chromosome6	44613527	C	0	*	*	0	*	*	1	,-2gg	I	1	,-2gg	I	1	,	J
-Chromosome6	44614773	G	2	.-5ATTAT.	?J	0	*	*	0	*	*	3	...-5ATTAT	JJJ	4	..A.	JJJJ
-Chromosome6	44614864	G	2	CC	FF	0	*	*	0	*	*	3	..C	JFA	4	.C.C	JJ<s
-Chromosome6	44615118	T	2	,-1a,-1a	JJ	1	.-2AA	s	0	*	*	1	,-1a	J	3	,-1a,-1a,-1a	AFJ
-Chromosome6	44615141	C	2	,g	JJ	1	G	s	0	*	*	2	,g	J7	2	,,	JJ
-Chromosome6	44621466	G	0	*	*	1	.-1A	s	4	.-1A...	ss\s	1	.-1A	s	1	.	o
-Chromosome6	44627802	A	0	*	*	1	.	J	2	C.	JJ	1	C	o	0	*	*
-Chromosome6	44627804	G	0	*	*	1	.	J	2	A.	JJ	1	A	R	0	*	*
-Chromosome6	44627808	C	0	*	*	1	.	J	2	T.	JJ	1	T	V	0	*	*
-Chromosome6	44627809	T	0	*	*	1	.	J	2	C.	JJ	1	C	e	0	*	*
-Chromosome6	44627827	C	0	*	*	1	.	J	2	A.	JJ	1	T	k	0	*	*
-Chromosome6	44627829	G	0	*	*	1	A	J	2	A.	JJ	1	.	`	0	*	*
-Chromosome6	44703825	G	1	,	J	2	,a	JJ	1	c	J	0	*	*	0	*	*
-Chromosome6	44818747	G	0	*	*	2	.C	Ro	0	*	*	2	CC	so	2	..	s`
-Chromosome6	44818748	T	0	*	*	2	C.	Me	0	*	*	2	..	sW	2	CC	sj
-Chromosome6	44818787	C	0	*	*	1	.-1A	s	0	*	*	2	,-1a,	JF	1	,	J
-Chromosome6	44876580	C	1	t	J	0	*	*	0	*	*	1	,	J	2	t,	<J
-Chromosome6	44885064	T	0	*	*	1	,-1a	G	1	,-1a	G	0	*	*	1	,	7
-Chromosome6	45133302	C	1	.-2AA	s	1	.-2AA	s	0	*	*	0	*	*	1	.-2AA	s
-Chromosome6	45133314	A	1	.-2AT	]	1	.	i	0	*	*	0	*	*	1	.-2AT	]
-Chromosome6	45147589	G	0	*	*	1	A	J	1	.	J	2	C,	<F	0	*	*
-Chromosome6	45147989	C	1	T	J	2	..	JJ	0	*	*	2	T.	JJ	0	*	*
-Chromosome6	45202208	C	1	.-7AATGGAG	J	0	*	*	1	.	J	0	*	*	1	.-7AATGGAG	J
-Chromosome6	45203723	A	2	..-1T	JA	0	*	*	1	.	J	0	*	*	1	.-1T	H
-Chromosome6	45203724	T	2	.*	JF	0	*	*	1	.	J	0	*	*	1	*	J
-Chromosome6	45290646	C	2	.T	JJ	0	*	*	3	.TT	JFJ	0	*	*	1	T	J
-Chromosome6	45290657	C	2	.-1A.-1A	JF	0	*	*	3	.-1A.-1A.-1A	JJJ	0	*	*	1	.-1A	J
-Chromosome6	45290671	C	2	.G	JJ	0	*	*	3	.GG	JJJ	0	*	*	1	G	J
-Chromosome6	45290705	C	2	.T	J<	0	*	*	3	.TT	JJJ	0	*	*	1	T	J
-Chromosome6	45290970	G	2	a,	FA	0	*	*	3	aa,	JJJ	0	*	*	1	a	F
-Chromosome6	45291385	T	1	g	J	0	*	*	1	,-1a	H	0	*	*	1	.	o
-Chromosome6	45298835	T	1	.-4GTAC	7	1	.-4GTAC	:	0	*	*	0	*	*	1	.-4GTAC	:
-Chromosome6	45320183	A	4	TTTT	FJJJ	0	*	*	5	.TTTT	JFJAF	2	.T	FF	7	TTTT.TT	JJJJJJ<
-Chromosome6	45330328	T	1	,-1c	8	1	,	<	0	*	*	0	*	*	1	,-1c	8
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-Chromosome6	45338323	C	0	*	*	0	*	*	2	G,	sJ	1	g	J	1	.	s
-Chromosome6	45338330	C	0	*	*	0	*	*	2	T,	sJ	1	t	F	1	.	s
-Chromosome6	45343457	C	1	,	J	0	*	*	2	,a	FF	1	T	k	0	*	*
-Chromosome6	45343463	C	1	,	J	0	*	*	2	,-1g,	7J	1	A	s	0	*	*
-Chromosome6	45345206	A	0	*	*	0	*	*	1	.-4GTAC	@	1	,-4gtac	:	1	,-4gtac	:
-Chromosome6	45496562	T	0	*	*	0	*	*	2	C.	JJ	1	.	J	1	C	J
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-Chromosome6	45496648	C	1	A	s	0	*	*	2	.A	JJ	1	G	J	1	.	s
-Chromosome6	45713156	G	1	T	J	1	.	o	2	CT	sJ	0	*	*	0	*	*
-Chromosome6	45713184	C	1	T	J	1	.	s	2	.A	sJ	0	*	*	0	*	*
-Chromosome6	45713202	C	1	T	J	1	.	V	2	.T	eA	0	*	*	0	*	*
-Chromosome6	45899928	T	0	*	*	2	,-1a.	JJ	0	*	*	2	..	JJ	1	C	J
-Chromosome6	45933942	A	0	*	*	0	*	*	1	.	J	2	T.	FA	3	.T.	sJJ
-Chromosome6	45933955	G	0	*	*	0	*	*	1	.+1A	J	2	.+1A.	Is	4	.+1A.+1A.+1A,+1a	JJJJ
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-Chromosome6	45934074	T	0	*	*	0	*	*	1	c	J	2	.c	sJ	2	ac	JJ
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-Chromosome6	46204556	A	0	*	*	1	.	F	0	*	*	1	.-1C	E	1	.-1C	F
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-Chromosome6	46459946	T	1	,-4ccgg	J	1	.	s	0	*	*	2	,-4ccgg,-4ccgg	J<	0	*	*
-Chromosome6	46481965	G	3	,aa	7AJ	0	*	*	1	,	7	0	*	*	5	,,,t,	JAJ77
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-Chromosome6	46998795	G	2	.T	JJ	0	*	*	1	T	J	1	.	J	0	*	*
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-Chromosome6	47194137	A	0	*	*	1	g	J	1	,	F	0	*	*	3	,g.	JJs
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-Chromosome6	47258182	A	0	*	*	3	...	sss	3	C..	qss	0	*	*	4	..C.	ssqs
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-Chromosome6	47847976	C	0	*	*	1	.-1A	s	0	*	*	1	,-1a	J	1	,+3aaa	F
-Chromosome6	47868693	A	1	,-1t	F	1	,-1t	J	1	,-1t	J	0	*	*	0	*	*
-Chromosome6	47869043	A	0	*	*	2	.G	Js	0	*	*	1	G	s	3	G.G	sos
-Chromosome6	47869051	A	0	*	*	3	..+1G,+1g	FJA	0	*	*	2	.+1G,+1g	JE	5	.+1G..+1G,+1g,+1g	JsJJJ
-Chromosome6	47869065	C	0	*	*	2	.T	<s	0	*	*	1	T	s	3	T.T	oss
-Chromosome6	47869076	A	0	*	*	2	.$C	Ao	0	*	*	1	C	o	3	C.C	sss
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-Chromosome6	51761025	A	0	*	*	1	.	J	1	G	J	0	*	*	2	G.	Js
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-Chromosome6	51824433	T	0	*	*	3	..A	JJJ	2	..	FJ	4	..A.	JJJJ	0	*	*
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-Chromosome6	51969766	G	1	A	F	0	*	*	0	*	*	2	T.	JJ	1	.	s
-Chromosome6	52210109	T	1	.-7GTTGCAA	9	0	*	*	0	*	*	1	.-7GTTGCAA	O	1	,-7gttgcaa	8
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-Chromosome6	52251874	G	1	a	J	0	*	*	4	,,,a	JJAJ	0	*	*	2	a,	JJ
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-Chromosome6	56482978	C	0	*	*	5	..A..	VgJgg	5	....A	gggsJ	6	.....,	gggWgA	7	.A.....	gJgggYg
-Chromosome6	56593850	G	2	C,	sF	1	c	J	1	,	J	0	*	*	0	*	*
-Chromosome6	56593860	T	2	G,	sJ	1	g	J	1	,	J	0	*	*	0	*	*
-Chromosome6	56595471	G	1	,	<	0	*	*	1	a	F	0	*	*	5	,a,,,	FF<JF
-Chromosome6	56595483	A	1	g	A	0	*	*	1	,	J	0	*	*	5	,,ggg	AJFJJ
-Chromosome6	56595531	C	1	,	J	0	*	*	1	t	J	0	*	*	4	t,,,	JJFA
-Chromosome6	56604307	G	1	a	J	0	*	*	1	.	s	3	a,,	<JJ	2	,a	JJ
-Chromosome6	56604353	C	1	t	J	0	*	*	1	,	J	3	t,,	JJJ	2	,t	FJ
-Chromosome6	56604437	A	1	g	J	0	*	*	1	,	J	3	g,,	JJJ	2	,g	JJ
-Chromosome6	56773294	T	0	*	*	1	.	J	0	*	*	1	C	J	2	.C	FJ
-Chromosome6	56773366	C	0	*	*	1	.	A	0	*	*	2	TT	JJ	2	.T	AJ
-Chromosome6	56839954	C	0	*	*	1	.$	E	2	.-2AG.-2AG	JJ	3	.$.$,-2ag	EEJ	0	*	*
-Chromosome6	56839989	G	0	*	*	1	,-6cgtcct	A	2	.-6CGTCCT.-6CGTCCT	Ca	2	,-6cgtcct,-6cgtcct	AA	0	*	*
-Chromosome6	56841168	A	1	.-2TT	J	1	.-2TT	J	1	.-3TTT	s	0	*	*	0	*	*
-Chromosome6	56933810	C	1	.-1T	o	1	.	s	0	*	*	0	*	*	1	*	d
-Chromosome6	57101085	T	0	*	*	2	a,	JF	3	c,,	JJJ	0	*	*	1	,	J
-Chromosome6	57101094	C	0	*	*	2	t,	FJ	3	,,t	JJF	0	*	*	1	,	J
-Chromosome6	57204791	C	0	*	*	2	.-1A.-1A	ke	1	.-1A	o	1	.-1A	j	1	.-1A	J
-Chromosome6	57212996	G	2	,a	7J	1	a	F	0	*	*	0	*	*	1	,	J
-Chromosome6	57219709	T	0	*	*	1	a	J	0	*	*	2	,a	JJ	1	,	J
-Chromosome6	57219715	C	0	*	*	1	g	J	0	*	*	2	,g	JJ	1	,	J
-Chromosome6	57367009	C	1	T	J	1	.	F	2	T.	FJ	0	*	*	0	*	*
-Chromosome6	57367116	A	1	g	J	1	,	<	2	g,	<F	0	*	*	0	*	*
-Chromosome6	57513153	G	2	,,	JJ	4	,-2cc*,-2cc,-2cc	JAJJ	7	,-2cc,-2cc,,,,+2cc,	JJJ7JJA	4	,-2cc,,+1c,+1c	JFJJ	7	,-2cc,,,,,+1c,+2cc	JJFJ7JF
-Chromosome6	57513218	T	2	,,	JJ	4	c,,,	JJJJ	8	,c,,,,,,	JAJJ<JJJ	6	,,cc,,	JJJJFJ	8	,ccc,,,,	JJJJAJJJ
-Chromosome6	57670729	G	2	AA	JJ	4	,A..	ssAJ	0	*	*	0	*	*	4	.A.A	JJ7J
-Chromosome6	57724967	C	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,-1a	J
-Chromosome6	57750808	C	0	*	*	2	T.	Rs	1	T	s	0	*	*	1	.	J
-Chromosome6	57750931	C	0	*	*	2	,t	JJ	1	t	J	0	*	*	1	,	J
-Chromosome6	57758947	G	0	*	*	0	*	*	2	A.	JA	2	A.	JJ	3	...	JJJ
-Chromosome6	57758973	C	0	*	*	0	*	*	2	T.	JA	2	..	J7	3	.G.	JJJ
-Chromosome6	57759018	C	0	*	*	0	*	*	2	.T	J<	2	..	JJ	3	.T.	JJJ
-Chromosome6	57759034	A	0	*	*	0	*	*	2	..	JJ	2	.G	FJ	3	G..	JJA
-Chromosome6	57759261	C	0	*	*	0	*	*	1	,	J	1	t	J	3	t,,	JJJ
-Chromosome6	57759921	A	2	..	jJ	0	*	*	2	.G	JJ	0	*	*	1	G	J
-Chromosome6	57759930	A	2	..-1T	oJ	0	*	*	3	.-1T.-1T.	JJJ	0	*	*	1	.	J
-Chromosome6	57759972	C	2	.T	sJ	0	*	*	3	TT.	JFF	0	*	*	1	.	J
-Chromosome6	57759988	G	2	..	sF	0	*	*	3	..A	A7J	0	*	*	1	A	J
-Chromosome6	57760002	G	2	A,	JJ	0	*	*	3	AA.	JFF	0	*	*	1	.	J
-Chromosome6	57760375	C	0	*	*	1	,	J	3	,t,	JJJ	2	,T	JJ	1	t	F
-Chromosome6	57992265	C	0	*	*	1	.-1A	s	1	.	J	0	*	*	1	.-1A	J
-Chromosome6	57992293	G	0	*	*	1	.-7TAGGAAC	s	1	.	F	0	*	*	1	.-7TAGGAAC	J
-Chromosome6	58217350	C	0	*	*	0	*	*	2	..	JJ	1	T	J	2	.T	JJ
-Chromosome6	58217355	C	0	*	*	0	*	*	2	..	JJ	1	A	F	2	T.	JJ
-Chromosome6	58262764	A	0	*	*	1	,	7	2	CC	`A	0	*	*	2	C.	oJ
-Chromosome6	58262786	C	0	*	*	1	,	J	2	T.	VF	0	*	*	2	t.	AJ
-Chromosome6	58262804	C	0	*	*	1	,	J	1	t	7	0	*	*	2	t.	7J
-Chromosome6	58289924	T	1	,	J	0	*	*	1	c	J	2	,c	JJ	0	*	*
-Chromosome6	58337457	G	2	.A	JJ	2	..	J<	0	*	*	1	A	J	0	*	*
-Chromosome6	58337917	C	2	t,	7<	0	*	*	3	.,,	FJF	4	..,t	oJAA	0	*	*
-Chromosome6	58337926	T	2	cc	7F	0	*	*	3	C,,	JJA	4	..,c	sAJF	0	*	*
-Chromosome6	58337947	T	2	a,	JJ	0	*	*	2	,,	FF	4	..,a	ssJJ	0	*	*
-Chromosome6	58638250	A	1	g	J	1	,	J	0	*	*	2	g.	JJ	0	*	*
-Chromosome6	58675157	T	0	*	*	2	G.	oF	1	G	J	0	*	*	1	.	F
-Chromosome6	58973027	A	1	C	F	0	*	*	2	..	JJ	2	.C	JJ	2	.C	<A
-Chromosome6	58973141	T	1	C	j	0	*	*	2	..	oj	2	.C	js	2	.C	so
-Chromosome6	58973185	G	1	a	<	0	*	*	2	,,	J7	2	,a	JJ	2	,a	FJ
-Chromosome6	59072704	G	1	.	J	1	.-2AA	J	0	*	*	0	*	*	1	.-1A	J
-Chromosome6	59254821	T	2	.C	JJ	0	*	*	0	*	*	1	.	J	4	...C	FJJJ
-Chromosome6	59254977	T	2	ga	AJ	0	*	*	0	*	*	1	g	J	3	,g,	JJJ
-Chromosome6	59351195	C	2	TT	7J	1	.-1T	J	0	*	*	0	*	*	1	.	J
-Chromosome6	59388023	C	1	.	J	0	*	*	0	*	*	2	G,	JJ	1	G	J
-Chromosome6	59388051	C	1	T	J	0	*	*	0	*	*	2	.t	JJ	1	.	J
-Chromosome6	59388074	T	1	C	F	0	*	*	0	*	*	2	.c	JJ	1	.	J
-Chromosome6	59445298	C	0	*	*	0	*	*	1	G	J	1	.	<	2	A.	JJ
-Chromosome6	59445305	C	0	*	*	0	*	*	1	G	J	1	.	J	2	A.	JJ
-Chromosome6	59445333	T	0	*	*	0	*	*	1	.-2AA	:	1	.	J	2	.-2AA.	DJ
-Chromosome6	59445569	A	0	*	*	0	*	*	1	g	J	1	,	J	2	,g	JA
-Chromosome6	59494261	G	1	.	<	0	*	*	1	.-1T	J	1	.-3TTT	F	0	*	*
-Chromosome6	59515689	A	0	*	*	0	*	*	1	G	s	2	,g	JJ	1	,	J
-Chromosome6	59601586	G	2	.A	ss	0	*	*	1	A	o	0	*	*	1	.	s
-Chromosome6	59647475	G	0	*	*	2	.a	VJ	1	,	F	0	*	*	1	A	J
-Chromosome6	59647482	C	0	*	*	2	.-3TAG,-3tag	sJ	1	,	F	0	*	*	1	.-3TAG	J
-Chromosome6	59647500	G	0	*	*	2	A,	sJ	1	,	F	0	*	*	1	A	F
-Chromosome6	59647539	C	0	*	*	2	a,	JJ	1	,	J	0	*	*	1	G	J
-Chromosome6	59655241	A	1	,-1g	A	1	,-1g	a	1	,-1g	J	1	,-1g	J	0	*	*
-Chromosome6	59830166	A	1	,-1t	>	0	*	*	0	*	*	1	,-1t	>	1	,-1t	>
-Chromosome6	59998206	G	2	..	JJ	0	*	*	0	*	*	2	.T	JA	3	.T.	JJJ
-Chromosome6	59998234	A	2	..	JJ	0	*	*	0	*	*	2	.G	JF	3	.G.	JJJ
-Chromosome6	59998263	C	2	..	JJ	0	*	*	0	*	*	2	.T	JJ	3	.T.	JJJ
-Chromosome6	59998266	C	2	T.	FJ	0	*	*	0	*	*	2	..	JA	3	..T	JJF
-Chromosome6	59998269	C	2	..	7J	0	*	*	0	*	*	2	.A	J7	3	.A.	JJJ
-Chromosome6	59998308	C	2	.T	JJ	0	*	*	0	*	*	2	.A	FM	3	.A.	JJJ
-Chromosome6	59998336	T	2	,,	AJ	0	*	*	0	*	*	2	a,	7J	3	,a,	JJJ
-Chromosome6	59998417	T	2	cc	JJ	0	*	*	0	*	*	2	,c	7J	3	c,c	JJJ
-Chromosome6	59998419	A	2	g,	FJ	0	*	*	0	*	*	2	gg	<J	3	,g,	JJJ
-Chromosome6	60186934	T	0	*	*	1	,	J	4	aa,,	JJJF	4	a,,a	JJJJ	2	aa	JJ
-Chromosome6	60188271	C	2	.G	JJ	0	*	*	5	G....	JJJJJ	1	.	J	2	.G	J<
-Chromosome6	60206974	T	0	*	*	2	C.	JJ	1	C	J	0	*	*	3	C.C	JJJ
-Chromosome6	60272590	A	1	.	F	1	G	J	0	*	*	0	*	*	2	.G	JJ
-Chromosome6	60281164	T	0	*	*	1	.	J	0	*	*	3	C..	JJJ	3	C..	JJJ
-Chromosome6	60294838	A	0	*	*	1	.-6TACGAG	9	2	.-6TACGAG.-6TACGAG	89	0	*	*	1	.-6TACGAG	9
-Chromosome6	60295065	T	0	*	*	0	*	*	2	.$c	EJ	1	.	o	1	c	J
-Chromosome6	60296353	T	1	,-1a	J	0	*	*	1	.-1A	J	1	.-1A	7	0	*	*
-Chromosome6	60447285	T	0	*	*	4	C.CC	JJJJ	1	C	J	0	*	*	1	.	J
-Chromosome6	60456693	A	0	*	*	0	*	*	1	.	s	2	.g	sJ	1	g	J
-Chromosome6	60675187	C	0	*	*	1	.	J	1	T	J	2	*.	jJ	0	*	*
-Chromosome6	60777452	T	1	g	J	2	.g	sJ	0	*	*	0	*	*	1	,	J
-Chromosome6	60781001	C	0	*	*	1	T	J	2	.T	os	1	.	s	0	*	*
-Chromosome6	60786154	G	0	*	*	1	C	s	0	*	*	1	.	J	2	,C	sA
-Chromosome6	60786173	G	0	*	*	1	.	s	0	*	*	2	tT	JJ	2	t.	sF
-Chromosome6	60960093	T	0	*	*	0	*	*	1	G	A	1	.	J	2	.G	JF
-Chromosome6	60960134	G	0	*	*	0	*	*	1	A	<	1	.	J	2	.A	JJ
-Chromosome6	60978890	G	0	*	*	0	*	*	1	.	J	1	T	J	2	T.	JJ
-Chromosome6	60979224	C	0	*	*	0	*	*	1	,	A	1	g	J	2	,g	J<
-Chromosome6	61013830	G	2	.+1T.	JJ	3	.+1T..	JJs	1	.	J	0	*	*	0	*	*
-Chromosome6	61013838	C	2	.-1A.	JJ	3	.-1A..	FJs	1	.	J	0	*	*	0	*	*
-Chromosome6	61013851	G	2	C.	JJ	2	C.	Js	1	.	J	0	*	*	0	*	*
-Chromosome6	61013856	A	2	TC	JJ	2	T.	Js	1	C	J	0	*	*	0	*	*
-Chromosome6	61013857	T	2	.G	JJ	2	..	Js	1	G	J	0	*	*	0	*	*
-Chromosome6	61013861	C	2	T.	JJ	3	T..	JJs	1	.	J	0	*	*	0	*	*
-Chromosome6	61013872	T	2	C.	as	3	C..	aks	1	.	o	0	*	*	0	*	*
-Chromosome6	61013921	C	2	G$.$	Jm	3	G$..	ARs	1	.$	m	0	*	*	0	*	*
-Chromosome6	61013968	G	2	,a	JF	2	,,	JJ	1	a	J	0	*	*	0	*	*
-Chromosome6	61014007	A	2	gc	JJ	2	,g	JJ	1	,	J	0	*	*	0	*	*
-Chromosome6	61061736	A	0	*	*	2	C.	7s	2	C.	JJ	0	*	*	1	.	J
-Chromosome6	61061745	C	0	*	*	2	.T	7s	3	.T.	JAJ	0	*	*	1	T	J
-Chromosome6	61061850	G	1	t	A	3	.C.	sRJ	4	A...	JJoo	0	*	*	1	.	A
-Chromosome6	61061865	C	1	a	J	2	..	sJ	2	G.	os	0	*	*	0	*	*
-Chromosome6	61062533	G	1	,	J	0	*	*	0	*	*	1	a	A	2	a,	JJ
-Chromosome6	61062573	T	1	a	J	0	*	*	0	*	*	1	,	J	3	,a.	JJs
-Chromosome6	61062630	A	1	c	J	0	*	*	0	*	*	1	,	J	2	c.	Js
-Chromosome6	61062645	A	1	g	J	0	*	*	0	*	*	1	,	J	2	g.	Js
-Chromosome6	61063621	C	2	A.	;J	1	T	F	2	.,	sJ	0	*	*	0	*	*
-Chromosome6	61063623	G	2	.A	;J	1	.	F	2	T,	sJ	0	*	*	0	*	*
-Chromosome6	61063706	G	1	.	J	0	*	*	2	A,	sJ	0	*	*	1	a	J
-Chromosome6	61063723	C	1	.	J	0	*	*	3	,,T	JFF	1	T	F	2	,T	JJ
-Chromosome6	61063742	G	0	*	*	0	*	*	2	,T	FJ	1	T	J	2	,T	JJ
-Chromosome6	61063747	C	0	*	*	0	*	*	2	,A	JJ	1	A	J	2	,A	JJ
-Chromosome6	61064303	A	1	.	J	0	*	*	2	GG	sJ	0	*	*	2	G,	J7
-Chromosome6	61064304	A	1	.	F	0	*	*	2	GT	sF	0	*	*	2	G,	JF
-Chromosome6	61064315	T	1	C	J	0	*	*	2	.C	sJ	0	*	*	1	.	J
-Chromosome6	61064679	C	0	*	*	2	T.	FJ	4	....	sJJF	1	T	J	1	A	J
-Chromosome6	61126298	C	0	*	*	1	.	s	1	.-1A	s	1	.-1A	s	0	*	*
-Chromosome6	61285276	A	1	.	F	0	*	*	1	G	J	0	*	*	3	GG.	JJF
-Chromosome6	61285286	G	1	A	J	0	*	*	1	.	A	0	*	*	3	.C.	JJJ
-Chromosome6	61285287	G	1	.	J	0	*	*	1	A	7	0	*	*	3	AA.	JJJ
-Chromosome6	61285340	G	1	.	J	0	*	*	1	.-1C	J	0	*	*	3	.-1C.-1C.-1C	FJJ
-Chromosome6	61285478	C	1	g	<	0	*	*	1	,	J	0	*	*	3	gg,	JJJ
-Chromosome6	61285486	T	1	a	F	0	*	*	1	,	J	0	*	*	3	a,,	JJJ
-Chromosome6	61285490	C	1	,	J	0	*	*	1	g	J	0	*	*	3	,t,	JJJ
-Chromosome6	61285498	C	1	t	A	0	*	*	1	,	F	0	*	*	3	tt,	FFF
-Chromosome6	61321090	C	2	t,	JJ	0	*	*	1	,	J	1	T	o	0	*	*
-Chromosome6	61339896	A	1	,	J	1	,-1t	J	0	*	*	0	*	*	2	,-2tt,	FJ
-Chromosome6	61411108	C	0	*	*	0	*	*	1	,-8tttacagt	;	1	,	J	1	,-8tttacagt	;
-Chromosome6	61411141	T	0	*	*	0	*	*	1	,-3tac	:	1	,	F	1	,-3tac	:
-Chromosome6	61616971	C	0	*	*	0	*	*	1	,-2tt	J	1	,-2tt	J	2	,-2tt,	JF
-Chromosome6	61626158	C	0	*	*	1	T	7	2	..	b]	3	..,-9gttctcctt	An6	0	*	*
-Chromosome6	61738473	A	1	,-1t	s	0	*	*	1	,-1t	s	0	*	*	3	,-1t,.	sse
-Chromosome6	61738484	T	1	,-2tg	=	0	*	*	1	,-2tg	=	0	*	*	3	,-2tg,.	=jR
-Chromosome6	61757762	G	1	.	A	0	*	*	1	A	J	3	.T.	JJJ	0	*	*
-Chromosome6	61757785	A	1	.-4GCTT	F	0	*	*	1	.	J	3	.-4GCTT..	HJJ	0	*	*
-Chromosome6	61757786	G	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
-Chromosome6	61757787	C	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
-Chromosome6	61757788	T	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
-Chromosome6	61757789	T	1	*	G	0	*	*	1	.	J	3	*..	GJJ	0	*	*
-Chromosome6	61757804	G	1	A	<	0	*	*	1	T	J	3	A..	JJJ	0	*	*
-Chromosome6	61757828	G	1	A	A	0	*	*	1	.	J	3	A..	JJJ	0	*	*
-Chromosome6	61757845	A	1	G	J	0	*	*	1	.	F	3	G..	J<7	0	*	*
-Chromosome6	61762214	T	0	*	*	4	,,,,	JJJJ	5	,,c,,	JJJJJ	3	c,,	JJJ	3	,,c	JJJ
-Chromosome6	61780836	C	1	T	F	0	*	*	1	.	J	0	*	*	2	T.	JA
-Chromosome6	61780976	T	1	c	J	0	*	*	1	,	J	0	*	*	2	,c	JF
-Chromosome6	61781001	T	1	c	J	0	*	*	1	,	J	0	*	*	2	,c	JA
-Chromosome6	61781015	G	1	a	J	0	*	*	1	,	J	0	*	*	2	,a	JJ
-Chromosome6	61781056	C	1	a	J	0	*	*	1	,	J	0	*	*	2	,a	JF
-Chromosome6	61912933	C	1	.	J	0	*	*	0	*	*	1	T	s	3	..T	JJJ
-Chromosome6	61912934	G	1	A	J	0	*	*	0	*	*	1	.	s	3	AA.	JJJ
-Chromosome6	61912940	G	1	.	J	0	*	*	0	*	*	1	A	s	3	..A	JJJ
-Chromosome6	61912961	A	1	.	s	0	*	*	0	*	*	1	G	s	3	..G	eRJ
-Chromosome6	61912966	C	1	.	s	0	*	*	0	*	*	1	T	s	3	..T	sjJ
-Chromosome6	61912969	G	1	.	s	0	*	*	0	*	*	1	A	s	3	..A	ssJ
-Chromosome6	61912990	G	1	.	s	0	*	*	0	*	*	1	C	s	3	..C	soJ
-Chromosome6	61913009	A	1	,	J	0	*	*	0	*	*	1	G	s	3	G,,	JJJ
-Chromosome6	61913020	T	1	,	J	0	*	*	0	*	*	1	C	s	3	C,,	JJJ
-Chromosome6	61913021	T	1	,	J	0	*	*	0	*	*	1	C	s	3	C,,	JJJ
-Chromosome6	61913043	G	1	a	J	0	*	*	0	*	*	1	.	]	3	.,a	JJJ
-Chromosome6	61913051	A	1	,	J	0	*	*	0	*	*	1	g	J	3	G,,	JJJ
-Chromosome6	62014468	T	3	,,c	FF>	1	c	?	0	*	*	0	*	*	2	c,	?F
-Chromosome6	62326639	T	0	*	*	0	*	*	1	.-4CTAA	=	1	.-4CTAA	=	1	.-4CTAA	=
-Chromosome6	62652762	T	0	*	*	1	.	J	2	CC	JJ	2	.C	AJ	0	*	*
-Chromosome6	62678077	G	0	*	*	2	.A	JJ	0	*	*	2	AA	JJ	1	.	J
-Chromosome6	62704948	T	0	*	*	1	C	a	2	c.	Js	1	,	<	0	*	*
-Chromosome6	62899613	G	0	*	*	0	*	*	2	.A	Js	1	A	J	2	..	JJ
-Chromosome6	62899614	A	0	*	*	0	*	*	2	.C	Js	1	C	J	2	..	7J
-Chromosome6	62937754	A	0	*	*	0	*	*	3	.G.	JJJ	1	.	J	5	....G	JJJJF
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-Chromosome6	63067587	C	0	*	*	1	,	J	2	,g	JJ	6	.,,,t,	7JJJJJ	2	,t	JA
-Chromosome6	63455590	A	1	.	j	2	.-1C.	JJ	1	.-1C	J	0	*	*	0	*	*
-Chromosome6	63455591	C	1	.	k	2	*.	JJ	1	*	J	0	*	*	0	*	*
-Chromosome6	63481968	G	0	*	*	2	T.	JJ	0	*	*	1	T	J	1	.	J
-Chromosome6	63482031	C	0	*	*	2	T.	sJ	0	*	*	1	A	J	1	.	J
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-Chromosome6	63482086	A	0	*	*	2	G.	s`	0	*	*	1	G	s	1	.	\
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-Chromosome6	63527151	C	1	.	A	2	T.	FA	7	T......	JJFJJJJ	3	.T.	JJJ	1	T	J
-Chromosome6	63538763	G	1	A	J	0	*	*	0	*	*	1	.	F	2	.A	VJ
-Chromosome6	63538773	C	1	T	J	0	*	*	0	*	*	1	.	J	2	.T	eJ
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-Chromosome6	63645325	A	2	gt	JF	2	gg	JJ	0	*	*	0	*	*	1	c	7
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-Chromosome6	63645408	G	2	tt	JJ	2	c,	FF	0	*	*	1	.	s	0	*	*
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-Chromosome6	63709114	T	1	C	s	1	.	o	0	*	*	0	*	*	2	AC	os
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-Chromosome6	63831894	A	1	,	J	2	,t	JJ	0	*	*	0	*	*	1	t	J
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-Chromosome6	63932503	T	1	.-1A	F	0	*	*	0	*	*	1	A	J	1	.	A
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-Chromosome6	66014998	A	1	.	J	0	*	*	1	G	J	0	*	*	2	.G	JJ
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-Chromosome6	68310092	C	2	.T	FJ	0	*	*	0	*	*	1	T	F	1	.	J
-Chromosome6	68310128	C	2	.T	J<	0	*	*	0	*	*	1	T	F	1	.	F
-Chromosome6	68310141	C	2	.A	J7	0	*	*	0	*	*	1	A	J	1	.	J
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-Chromosome6	68367052	T	1	.-4CCCC	F	1	.	J	0	*	*	1	.-4CCCC	o	0	*	*
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-Chromosome6	69094165	C	1	T	s	0	*	*	4	T...	ssss	3	T..	sss	0	*	*
-Chromosome6	69094189	C	1	T	j	0	*	*	4	....	ssss	3	T..	s`s	0	*	*
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-Chromosome6	69332285	A	1	.	J	0	*	*	0	*	*	1	G	A	2	G,	FJ
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-Chromosome6	74558653	G	2	,,	JJ	5	a,,,,	JAAJF	6	aa,,,,	FJJJJJ	11	,,a,,,,,,,a	FJJJJJJJJ<J	9	,,,aa,,,a	7JJJJJJJJ
-Chromosome6	74566683	G	0	*	*	1	.	o	5	.AAAA	sssss	3	A..	ssj	7	....AAA	sso`sss
-Chromosome6	74725029	C	0	*	*	0	*	*	1	.	J	3	T..	JJJ	2	T.	J<
-Chromosome6	74725127	G	0	*	*	0	*	*	1	,	J	3	.a,	fJJ	2	a,	JF
-Chromosome6	75115572	T	1	.	s	1	C	\	0	*	*	2	.C	Vs	0	*	*
-Chromosome6	75115602	G	1	,	J	1	a	7	0	*	*	2	A,	sF	0	*	*
-Chromosome6	75115605	A	1	,	J	1	g	A	0	*	*	2	G,	sF	0	*	*
-Chromosome6	75187567	C	2	T.	oV	0	*	*	1	T	s	2	..	ss	0	*	*
-Chromosome6	75242768	A	2	.-2CC.-2CC	JJ	1	.-2CC	J	3	.-2CC..	JJF	2	..-2CC	jJ	3	.-2CC.-2CC.-2CC	JJJ
-Chromosome6	75245544	G	1	.	J	1	A	a	0	*	*	2	.A	Ja	0	*	*
-Chromosome6	75253977	C	2	TA	FJ	0	*	*	2	A.	FJ	2	..	JJ	2	.G	JF
-Chromosome6	75333677	A	2	g,	JJ	1	g	J	0	*	*	1	,	J	2	,g	JJ
-Chromosome6	75333727	A	2	g,	JJ	1	g	J	0	*	*	1	,	J	2	,g	JJ
-Chromosome6	75333733	G	3	t,,	JAJ	1	t	J	0	*	*	1	,	F	2	,t	AJ
-Chromosome6	75503990	C	1	,	<	2	T,	so	0	*	*	0	*	*	1	t	J
-Chromosome6	75652866	G	1	c	F	0	*	*	1	,	F	4	.,,,-1t	sJJJ	1	t	J
-Chromosome6	75714546	G	0	*	*	1	.	J	0	*	*	3	.AA	sJJ	1	A	J
-Chromosome6	75714573	C	0	*	*	1	.	J	0	*	*	3	.TT	sFF	1	T	J
-Chromosome6	75820361	T	0	*	*	1	,	F	1	g	7	0	*	*	2	,g	JJ
-Chromosome6	75887622	T	1	.-1G	s	0	*	*	1	,-1g	J	1	.	f	0	*	*
-Chromosome6	75913261	C	0	*	*	1	,	F	1	,-3aat	J	0	*	*	1	,-3aat	J
-Chromosome6	75988115	A	0	*	*	1	.-11ACTTGGTTAGT	S	1	.	J	0	*	*	1	.-11ACTTGGTTAGT	:
-Chromosome6	76206843	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	AF
-Chromosome6	76206994	C	0	*	*	0	*	*	1	,	J	2	A,	sJ	2	,a	JA
-Chromosome6	76206996	A	0	*	*	0	*	*	1	g	J	2	G,	sJ	2	,g	JF
-Chromosome6	76207011	T	0	*	*	0	*	*	1	c	J	2	G,	sJ	2	,g	AJ
-Chromosome6	76233963	T	0	*	*	4	,c,,	JJJF	1	,	J	2	,c	JJ	1	c	J
-Chromosome6	76294495	T	1	c	J	0	*	*	1	,	J	2	c,	JJ	0	*	*
-Chromosome6	76294501	A	1	g	J	0	*	*	1	,	J	2	g,	JJ	0	*	*
-Chromosome6	76294520	T	1	c	J	0	*	*	1	,	J	2	c,	JJ	0	*	*
-Chromosome6	76365057	A	0	*	*	0	*	*	1	,	F	1	G	s	2	g,	JJ
-Chromosome6	76411620	G	0	*	*	0	*	*	1	A	o	1	.	s	2	.A	os
-Chromosome6	76505157	C	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J	1	,-1t	F
-Chromosome6	76529450	T	0	*	*	0	*	*	1	.-5CGTGA	[	1	.	`	1	.-5CGTGA	J
-Chromosome6	76575961	T	2	,,	JJ	0	*	*	1	,-1a	F	1	,-1a	J	0	*	*
-Chromosome6	76784603	C	1	,	F	0	*	*	2	,t	<J	1	t	J	0	*	*
-Chromosome6	76791186	G	1	,	F	0	*	*	5	,,,a,	JJJJJ	0	*	*	4	,,,t	JFFJ
-Chromosome6	76825522	T	1	G	J	0	*	*	2	CC	JJ	2	C.	JJ	2	c.	sJ
-Chromosome6	76825818	C	3	A..	sos	1	,	s	1	G	j	0	*	*	1	A	s
-Chromosome6	76854900	G	2	a,	JJ	1	,	J	0	*	*	0	*	*	1	t	J
-Chromosome6	76855127	A	0	*	*	1	C	V	0	*	*	1	.	J	2	G.	JJ
-Chromosome6	76880783	C	1	,-1t	<	1	,-1t	F	1	,-1t	J	1	,-1t	J	0	*	*
-Chromosome6	76910527	G	8	.T...A..	JJJ<AJJJ	3	...	FJJ	14	.........T....	JJJJJJ<JJJJJ7J	0	*	*	14	......A.A.....	JJAJ<JF7JJJJ7J
-Chromosome6	76911118	A	8	,,c,g,,g	J77JJ7<7	3	,,,	FJF	15	,,,,,,,g,,,,,g,	AJA7FJJJJ<JJFAJ	0	*	*	12	,,,,,,,,,g,,	JJF7FJAJJ7<J
-Chromosome6	76911142	G	8	,aa,,,,,	JJ<JJJAJ	3	,a,	JFJ	14	,,,,,a,,,a,,,,	JJFFJJJJFJJJJJ	0	*	*	15	,,,,,,,,,,,,,,,	7JJ7JJ7JJJFJFJJ
-Chromosome6	76911172	A	8	,,g,,,,,	JJJJJF<J	3	,,,	FJJ	15	,,,,,,,,,,g,,,,	FJF<AJJJJJJJJFJ	0	*	*	14	,,g,,,,,,,,,,,	JJJJJFJJJ77FJJ
-Chromosome6	77037688	A	2	..	Ae	0	*	*	2	G.	JJ	2	GG	8J	0	*	*
-Chromosome6	77040531	G	0	*	*	0	*	*	1	.-3TCC	F	1	.-3TCC	J	2	.-3TCC.	JJ
-Chromosome6	77040600	G	0	*	*	0	*	*	1	.-2GA	B	1	.-6GAGAGA	<	2	.-6GAGAGA.-4GAGA	<>
-Chromosome6	77040808	C	0	*	*	0	*	*	1	,	J	1	,-2ta	A	2	,-2ta,	JJ
-Chromosome6	77112261	C	5	,,,,,	JJFJJ	4	,,t,	JJF<	9	,,,,,,,t,	JJ<JJAJJJ	9	,t,,t,t,,	JJJJJAJFJ	7	a,,t,,,	JFJFFJJ
-Chromosome6	77112323	A	5	,,t,t	JJJJF	3	,gt	JJJ	10	,,,,,,,,,t	FJJJFFJ<FJ	7	t,,t,t,	JFJJJJ<	7	g,,,,,t	JJJJJFF
-Chromosome6	77125108	A	2	,-1t,	FJ	3	,-1t,-1t,	AJJ	3	,-1t,-1t,-1t	FJJ	0	*	*	3	,-1t,-1t,	JJJ
-Chromosome6	77179125	G	0	*	*	2	,,	JJ	8	,a,,,,,,	JJJJJJJJ	4	a,,,	AJFJ	6	,,aa,,	JJJJJJ
-Chromosome6	77326754	A	2	TT	JJ	2	T.	FJ	1	.	J	0	*	*	0	*	*
-Chromosome6	77493461	A	1	T	F	0	*	*	3	..T	JJJ	2	..	FJ	0	*	*
-Chromosome6	77493463	T	1	.	F	0	*	*	3	.A.	JJJ	2	AA	7J	0	*	*
-Chromosome6	77493527	C	1	T	J	0	*	*	3	..T	JJJ	2	..	AJ	0	*	*
-Chromosome6	77493633	A	1	g	J	0	*	*	4	.gg,	sJJJ	3	.gg	sJJ	0	*	*
-Chromosome6	77493705	C	1	t	F	0	*	*	4	.,t,	jJJJ	3	.,a	oJJ	0	*	*
-Chromosome6	77493712	T	1	,	F	0	*	*	4	A,,a	eJJJ	3	.,a	sFJ	0	*	*
-Chromosome6	77493741	C	1	t	F	0	*	*	4	,t,,	JJJJ	3	.,,	sJJ	0	*	*
-Chromosome6	77673599	T	0	*	*	1	.-2CA	J	1	.	J	1	.-2CA	j	0	*	*
-Chromosome6	77693540	C	1	,	J	2	t,	JF	0	*	*	0	*	*	1	g	F
-Chromosome6	77826433	T	1	.-1A	J	0	*	*	1	.	J	0	*	*	1	.-1A	J
-Chromosome6	78045481	T	0	*	*	1	.	j	0	*	*	2	.G	MJ	1	G	J
-Chromosome6	78047275	A	1	t	J	4	.,,,	sJJF	0	*	*	0	*	*	3	,t,	JJF
-Chromosome6	78053167	C	0	*	*	0	*	*	2	..	sJ	2	.G	JJ	1	g	J
-Chromosome6	78091490	T	0	*	*	0	*	*	4	,,,,	JJJJ	2	g,	JJ	4	,c,,	JJFJ
-Chromosome6	78091512	G	0	*	*	0	*	*	4	,,,,	JJJJ	3	,t,	JJJ	4	,,t,	FJJJ
-Chromosome6	78097276	G	0	*	*	1	.	s	2	,t	FF	3	,t,	JJJ	0	*	*
-Chromosome6	78107316	A	0	*	*	0	*	*	1	g	J	2	,g	JJ	1	,	<
-Chromosome6	78307093	T	0	*	*	0	*	*	1	G	s	2	.A	ss	1	A	s
-Chromosome6	78359870	C	0	*	*	2	,,	A7	1	,-4ccaa	5	3	,,-4ccaa,-4ccaa	>57	4	,,-4ccaa,-4ccaa,-4ccaa	E555
-Chromosome6	78368947	A	1	.	J	2	.T	JJ	3	.TT	JJ7	3	T..	JJJ	6	T.TT..	JJJJJJ
-Chromosome6	78480127	C	1	t	J	3	,,t	JJJ	7	,,,,t,,	J7JA<JJ	2	..	sJ	6	,,,,,t	JAJFJJ
-Chromosome6	78480670	G	1	,	J	0	*	*	2	A.	Fk	2	A.	eJ	0	*	*
-Chromosome6	78480735	G	1	,	F	0	*	*	2	A.	Qs	2	.a	`<	0	*	*
-Chromosome6	78543183	G	2	A.	JJ	0	*	*	4	,A..	oJAJ	0	*	*	3	...	JJJ
-Chromosome6	78543189	A	2	T.	JJ	0	*	*	4	,T..	f<JJ	0	*	*	4	....	FJFJ
-Chromosome6	78543231	T	2	C.	JJ	0	*	*	3	C..	AJJ	1	C	J	4	....	FJFJ
-Chromosome6	78543289	C	2	T.	JF	1	T	J	4	T...	JAJJ	1	.	J	4	.T..	FJ7J
-Chromosome6	78699018	C	1	.	<	1	.-1A	J	0	*	*	0	*	*	1	.-1A	J
-Chromosome6	78854139	A	0	*	*	1	.	s	2	.G	JJ	0	*	*	2	G.	AJ
-Chromosome6	78854145	A	0	*	*	1	.	s	2	.C	JJ	0	*	*	2	C.	JJ
-Chromosome6	78854155	A	0	*	*	1	.	s	1	G	J	0	*	*	2	G.	JJ
-Chromosome6	78864971	G	0	*	*	0	*	*	1	A	s	2	,A	Js	1	,	<
-Chromosome6	79031452	C	1	.-1T	9	1	.-1T	=	1	.-1T	9	0	*	*	0	*	*
-Chromosome6	79104423	T	1	.-25CCATGCGGCGCTGGAACAGATAGAC	]	2	.-25CCATGCGGCGCTGGAACAGATAGAC.-25CCATGCGGCGCTGGAACAGATAGAC	N]	1	.-25CCATGCGGCGCTGGAACAGATAGAC	O	0	*	*	0	*	*
-Chromosome6	79159275	A	2	,t	77	1	g	J	0	*	*	0	*	*	2	,,	JJ
-Chromosome6	79199862	A	0	*	*	5	....C	<JJJJ	0	*	*	1	.	J	1	C	J
-Chromosome6	79199909	A	0	*	*	5	....G	FJJJJ	0	*	*	1	.	J	1	G	J
-Chromosome6	79199945	C	0	*	*	6	....T.	AJJJJJ	0	*	*	1	.	J	1	T	J
-Chromosome6	79199967	T	0	*	*	4	..G.	JJJj	0	*	*	1	.	J	1	G	J
-Chromosome6	79200148	A	0	*	*	3	,,g	JJF	0	*	*	2	,.	JJ	1	g	A
-Chromosome6	79200248	C	0	*	*	2	t,	JF	0	*	*	1	.	R	1	t	J
-Chromosome6	79313827	C	0	*	*	1	.-3GAA	s	0	*	*	2	..-3GAA	JJ	1	.	s
-Chromosome6	79357297	A	1	.-1G	J	0	*	*	1	.-1G	J	0	*	*	1	.-1G	s
-Chromosome6	79457260	A	0	*	*	1	,	J	2	g,	JJ	2	g,	JJ	4	,,g,	JFJJ
-Chromosome6	79495741	A	0	*	*	2	..	JJ	2	g.	sJ	1	G	J	0	*	*
-Chromosome6	79528839	T	1	.-1G	J	0	*	*	1	.	J	0	*	*	2	.-1G,	JJ
-Chromosome6	79529284	T	0	*	*	2	..	ko	6	.C...,	sssssJ	2	C.	sj	0	*	*
-Chromosome6	79553847	C	1	T	J	1	.	J	0	*	*	2	.T	J5	0	*	*
-Chromosome6	79553885	T	1	A	J	1	.	<	0	*	*	2	.A	JJ	0	*	*
-Chromosome6	79558312	G	1	.	J	1	A	F	3	AA.	JJJ	0	*	*	0	*	*
-Chromosome6	79638561	G	1	.-8CTCTCTCT	J	1	.	J	0	*	*	0	*	*	1	.-10CTCTCTCTCT	J
-Chromosome6	79666718	A	2	T.	FJ	1	.	J	1	T	J	0	*	*	0	*	*
-Chromosome6	79666723	T	2	.G	<F	1	G	J	1	.	A	0	*	*	0	*	*
-Chromosome6	79666727	G	2	.T	7F	1	T	J	1	.	J	0	*	*	0	*	*
-Chromosome6	79682571	A	0	*	*	0	*	*	3	...-1G	JJJ	1	.	J	1	.-1G	F
-Chromosome6	79682572	G	0	*	*	0	*	*	3	..*	JJJ	1	.	J	1	*	F
-Chromosome6	79682591	C	0	*	*	0	*	*	3	..G	JFJ	1	.	J	1	G	<
-Chromosome6	79682600	G	0	*	*	0	*	*	3	..A	JFF	1	.	J	1	A	7
-Chromosome6	79682652	C	0	*	*	0	*	*	3	..T	JJJ	1	.	J	1	T	<
-Chromosome6	79801217	T	1	.-1C	F	1	,-1c	J	1	,	F	0	*	*	0	*	*
-Chromosome6	79861429	C	0	*	*	3	t,,	JJJ	1	,	J	0	*	*	1	t	F
-Chromosome6	79861453	A	0	*	*	3	t,,	JJJ	1	,	J	0	*	*	1	t	A
-Chromosome6	79935182	G	2	t,	JJ	3	,t,	F<J	0	*	*	0	*	*	1	,	J
-Chromosome6	80127387	G	0	*	*	0	*	*	1	A	J	3	..-7TCCCTAA.	JJJ	1	.-7TCCCTAA	J
-Chromosome6	80127552	G	0	*	*	2	,-7accctaa,	<F	2	.,	C7	3	a,,	A<s	3	a.a	JV<
-Chromosome6	80127564	T	0	*	*	2	,-1a,-1a	JJ	2	,-1a,-1a	AA	4	c,-1a,,-1a	JJsJ	2	.-1A,	J7
-Chromosome6	80139826	A	8	tccccccc	JJJJJJFJ	1	,	J	5	t,ccc	JJJJJ	5	ccccc	JJJJJ	9	tctctcccc	JJJJJFJJJ
-Chromosome6	80150634	T	2	C.	AJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome6	80150650	A	2	C.	7F	1	C	V	0	*	*	0	*	*	1	.	J
-Chromosome6	80207111	A	0	*	*	1	.	7	1	T	J	2	T.	FJ	0	*	*
-Chromosome6	80207328	T	0	*	*	1	,	7	1	c	J	2	,c	JJ	0	*	*
-Chromosome6	80280789	A	3	,-1c,-1c,-1c	FJJ	1	,-1c	J	3	,-1c,-1c.	J<s	0	*	*	2	,-1c,-1c	JF
-Chromosome6	80284209	C	1	,	J	1	,-3tgg	J	1	,-3tgg	A	0	*	*	0	*	*
-Chromosome6	80293527	A	0	*	*	2	.G	sF	2	,.	qF	0	*	*	1	G	J
-Chromosome6	80314002	C	0	*	*	0	*	*	1	.-4ACGT	<	2	.-4ACGT.-4ACGT	<<	1	.-4ACGT	<
-Chromosome6	80504111	C	0	*	*	1	T	s	2	.T	ss	0	*	*	1	.	s
-Chromosome6	80539407	T	2	,c	JF	2	cc	JJ	3	cc,	JJF	1	,	J	3	cc,	JJF
-Chromosome6	80569549	A	0	*	*	1	.-1T	s	0	*	*	1	.-1T	j	1	.	s
-Chromosome6	80581525	C	1	.-1T	F	0	*	*	1	.	J	0	*	*	1	.-1T	J
-Chromosome6	80586552	A	0	*	*	3	..T	JJF	2	T.	sA	0	*	*	1	.	F
-Chromosome6	80586563	C	0	*	*	3	G.G	JJJ	2	G.	sJ	0	*	*	1	.	F
-Chromosome6	80629825	G	0	*	*	2	..	sJ	0	*	*	1	T	J	2	.T	JJ
-Chromosome6	80718089	G	1	A	J	0	*	*	1	.	A	2	A.	F=	0	*	*
-Chromosome6	80718159	C	1	T	J	0	*	*	1	.	J	2	T.	FJ	0	*	*
-Chromosome6	80718195	G	1	.	F	0	*	*	1	A	J	2	.A	oJ	0	*	*
-Chromosome6	80729181	A	0	*	*	2	C.	Jc	1	.	J	0	*	*	1	C	J
-Chromosome6	80729253	T	0	*	*	2	.*	Fo	1	*	<	0	*	*	1	,	F
-Chromosome6	80729254	A	0	*	*	2	.*	7o	1	*	<	0	*	*	1	,	J
-Chromosome6	80731833	A	2	TT	JJ	0	*	*	2	T.	JF	0	*	*	1	.	<
-Chromosome6	80731841	T	2	.-10GATATGAATA.-10GATATGAATA	66	0	*	*	2	.-10GATATGAATA.	6J	0	*	*	1	.	J
-Chromosome6	80731910	G	2	TT	FJ	0	*	*	2	T.	JJ	0	*	*	1	.	<
-Chromosome6	80736524	A	1	.	J	0	*	*	0	*	*	1	.-19CCTGGCCATTCCCCGCCCG	5	1	.-10CCTGGCCATT	6
-Chromosome6	80736612	A	0	*	*	1	.-3GCC	J	0	*	*	1	.	J	1	.-3GCC	J
-Chromosome6	80777812	C	1	.-3TTT	J	0	*	*	1	.-2TT	o	0	*	*	1	.-2TT	J
-Chromosome6	80784258	C	1	.-1A	s	1	.-1A	J	0	*	*	1	.	J	0	*	*
-Chromosome6	80795524	C	3	..T	JJJ	0	*	*	2	.t	JJ	2	..	kJ	0	*	*
-Chromosome6	80806207	C	4	,t,t	JJJF	0	*	*	1	,	F	0	*	*	1	t	J
-Chromosome6	80811284	T	1	c	J	1	,	J	3	,,c	JJJ	0	*	*	0	*	*
-Chromosome6	80811291	C	1	,	J	1	t	J	3	t,,	JJJ	0	*	*	0	*	*
-Chromosome6	80857204	G	11	...+1T........+2TT	JFJJJJJJJJJ	0	*	*	7	...+1T.+1T.-1T..	JJ7HJJJ	2	..-1T	JJ	8	........+1T	JJJFJJJJ
-Chromosome6	80862541	A	2	T.	JJ	1	.	J	5	.T...	JJJJF	0	*	*	1	T	J
-Chromosome6	80865279	G	1	.-3TGT	9	1	.-3TGT	9	1	.-3TGT	9	0	*	*	3	.-3TGT.-3TGT.-3TGT	999
-Chromosome6	81181376	C	0	*	*	1	T	J	0	*	*	2	T.	JJ	1	.	J
-Chromosome6	81181467	T	0	*	*	1	A	s	0	*	*	2	A.	ss	1	.	s
-Chromosome6	81181480	G	0	*	*	1	A	s	0	*	*	2	A.	ss	1	.	s
-Chromosome6	81181552	G	0	*	*	1	t	J	0	*	*	2	,t	JJ	1	,	J
-Chromosome6	81181569	C	0	*	*	1	,	J	0	*	*	2	t,	JJ	1	t	J
-Chromosome6	81182376	C	0	*	*	1	.	J	1	T	J	2	.T	JJ	2	.T	JJ
-Chromosome6	81189157	A	0	*	*	1	,	J	4	,ggg	JJJJ	0	*	*	1	g	J
-Chromosome6	81197677	C	1	,-3ttt	g	1	.-3TTT	]	2	.-3TTT.-3TTT	]]	0	*	*	1	.-3TTT	]
-Chromosome6	81260891	A	1	.-1C	J	2	..	J<	0	*	*	1	.-1C	J	0	*	*
-Chromosome6	81261001	C	2	,A	Js	1	A	J	0	*	*	1	,	J	0	*	*
-Chromosome6	81261002	G	2	,C	Js	1	C	J	0	*	*	1	,	J	0	*	*
-Chromosome6	81261004	A	2	,G	Js	1	G	J	0	*	*	1	,	J	0	*	*
-Chromosome6	81261005	T	2	,C	Js	1	C	J	0	*	*	1	,	J	0	*	*
-Chromosome6	81261016	G	2	t.	Js	1	.	J	0	*	*	1	t	J	0	*	*
-Chromosome6	81261024	A	2	,T	Js	1	T	e	0	*	*	1	,	J	0	*	*
-Chromosome6	81261036	C	2	,G	Js	1	G	s	0	*	*	2	,.	Jo	0	*	*
-Chromosome6	81263692	A	0	*	*	1	.-1C	J	1	.-1C	J	1	.	W	3	.-1C..-1C	7JJ
-Chromosome6	81264012	A	0	*	*	0	*	*	1	,$	J	1	,-4cggg	F	1	,-4cggg	F
-Chromosome6	81269086	A	0	*	*	2	.G	JJ	1	,	s	1	G	F	0	*	*
-Chromosome6	81269112	G	0	*	*	2	A.	JJ	1	a	s	1	.	7	0	*	*
-Chromosome6	81271195	T	0	*	*	2	a,	FA	1	,	F	1	a	J	0	*	*
-Chromosome6	81280368	C	0	*	*	1	.-1T	s	1	.-1T	7	0	*	*	4	....-1T	JJJJ
-Chromosome6	81295217	T	1	c	J	5	,,,c,	JFJJJ	2	,c	JJ	1	,	J	0	*	*
-Chromosome6	81314228	T	0	*	*	0	*	*	2	C.	JJ	1	C	J	1	.	J
-Chromosome6	81328201	T	1	.	J	0	*	*	1	G	F	2	G.	FJ	0	*	*
-Chromosome6	81328229	G	1	.	J	0	*	*	1	T	J	2	T.	JF	0	*	*
-Chromosome6	81328249	G	1	.	F	0	*	*	1	C	7	2	C.	JF	0	*	*
-Chromosome6	81328929	G	0	*	*	2	,,	JJ	0	*	*	2	a.	FF	1	a	J
-Chromosome6	81356747	G	0	*	*	2	..	FA	0	*	*	2	.A	JF	1	A	J
-Chromosome6	81356774	C	0	*	*	2	.T	JJ	0	*	*	2	.G	JJ	1	G	s
-Chromosome6	81356834	G	0	*	*	2	..	`s	0	*	*	2	.T	oJ	1	T	A
-Chromosome6	81358304	T	1	,-1c	J	1	,-1c	7	1	.-1C	j	0	*	*	0	*	*
-Chromosome6	81439417	A	0	*	*	1	G	J	1	.	A	2	.g	A6	0	*	*
-Chromosome6	81452096	G	0	*	*	1	.-1A	J	0	*	*	1	.	J	1	.-1A	J
-Chromosome6	81514486	G	1	A	8	0	*	*	0	*	*	2	.A	J8	1	.	J
-Chromosome6	81514500	A	1	G	J	0	*	*	0	*	*	2	.G	JJ	1	.	J
-Chromosome6	81514503	C	1	A	J	0	*	*	0	*	*	2	.A	AJ	1	.	J
-Chromosome6	81514504	T	1	.	J	0	*	*	0	*	*	2	A.	JJ	1	A	J
-Chromosome6	81514511	A	1	.	J	0	*	*	0	*	*	2	.-1T.	FJ	1	.-1T	F
-Chromosome6	81514563	G	1	A	J	0	*	*	0	*	*	2	.A	AJ	1	.	<
-Chromosome6	81514575	G	1	.	J	0	*	*	0	*	*	2	C.	FF	1	C	J
-Chromosome6	81514648	T	1	c	J	0	*	*	0	*	*	2	c,	JF	1	,	J
-Chromosome6	81514668	A	1	t	J	0	*	*	0	*	*	2	t,	JJ	1	,	J
-Chromosome6	81514691	G	1	a	J	0	*	*	0	*	*	2	a,	JA	1	,	J
-Chromosome6	81514713	T	1	,	J	0	*	*	0	*	*	2	,,-1a	J<	1	,-1a	D
-Chromosome6	81514714	A	1	,	J	0	*	*	0	*	*	2	,*	JA	1	*	A
-Chromosome6	81553071	C	2	A.	so	0	*	*	3	.T,	ssJ	1	.	s	2	.T	Vs
-Chromosome6	81553107	A	2	c,	JJ	0	*	*	3	.g,	oJJ	1	,	J	2	,g	AJ
-Chromosome6	81620143	G	2	.*	7I	1	.	F	1	A	<	0	*	*	0	*	*
-Chromosome6	81620144	C	2	.*	FI	2	T.	A7	1	.	<	0	*	*	0	*	*
-Chromosome6	81664753	T	0	*	*	2	C.	JJ	2	C.	Js	0	*	*	1	.	J
-Chromosome6	81738646	A	0	*	*	0	*	*	2	G.	ja	2	.G	sa	2	..	`o
-Chromosome6	81741774	A	0	*	*	2	.C	JJ	2	.C	FJ	0	*	*	1	C	J
-Chromosome6	81741906	A	2	,g	FJ	2	G.	ss	3	G.g	soF	0	*	*	1	.	o
-Chromosome6	81741942	G	2	a,	JF	2	,a	JJ	3	aa,	JJJ	0	*	*	1	,	J
-Chromosome6	82084753	G	0	*	*	1	.	s	1	,-2aa	J	0	*	*	1	,-2aa	J
-Chromosome6	82086843	G	2	A,	JJ	1	*	J	1	.	J	0	*	*	0	*	*
-Chromosome6	82086844	C	2	T,	JJ	1	*	J	1	.	J	0	*	*	0	*	*
-Chromosome6	82087495	G	0	*	*	1	c	J	1	.	o	2	,c	JJ	0	*	*
-Chromosome6	82087511	C	0	*	*	1	,	J	1	g	J	2	g,	JJ	0	*	*
-Chromosome6	82098792	T	0	*	*	0	*	*	1	,	J	2	C.	so	2	C,	JJ
-Chromosome6	82100904	T	2	.c	JJ	0	*	*	1	.	J	0	*	*	1	C	7
-Chromosome6	82109493	G	0	*	*	0	*	*	1	.-1C	J	1	.-1C	J	1	,	J
-Chromosome6	82163744	G	0	*	*	1	.	k	1	A	f	1	,-1t	j	0	*	*
-Chromosome6	82196049	G	1	.	s	0	*	*	2	.C	ss	0	*	*	1	C	j
-Chromosome6	82196818	G	0	*	*	2	a,	JJ	2	a.	Jo	1	,	J	0	*	*
-Chromosome6	82224258	T	1	,-1a	J	1	,	J	2	,-1a,-1a	JJ	0	*	*	0	*	*
-Chromosome6	82353799	C	1	.-1A	F	0	*	*	2	..-1A	JJ	0	*	*	1	.-1A	F
-Chromosome6	82368761	C	2	.A	JA	0	*	*	1	A	J	1	.	J	0	*	*
-Chromosome6	82368782	C	2	T.	J<	0	*	*	1	.	J	1	T	J	0	*	*
-Chromosome6	82380511	C	0	*	*	0	*	*	3	TT.	JJJ	1	T	A	3	...	JJJ
-Chromosome6	82380576	A	0	*	*	0	*	*	4	GG..	sooj	1	G	s	3	.GG	oso
-Chromosome6	82380602	T	0	*	*	0	*	*	4	AA..	sssa	1	A	o	3	...	sss
-Chromosome6	82380663	C	0	*	*	0	*	*	4	.,gg	oJJJ	1	a	J	3	,gg	JJJ
-Chromosome6	82507008	A	2	.G	AF	1	G	J	1	.	J	0	*	*	2	.G	JA
-Chromosome6	82590775	G	2	a,	FF	3	a,,	FFF	2	,a	FF	2	,a	FF	3	aaa	FFF
-Chromosome6	82597656	G	0	*	*	0	*	*	3	.A.	JJ<	3	AA.	JJJ	1	.	J
-Chromosome6	82597832	T	0	*	*	0	*	*	3	,,,	JJJ	3	,cc	JJJ	1	c	J
-Chromosome6	82597835	T	0	*	*	0	*	*	3	c,c	FJJ	3	c,,	JJJ	1	c	J
-Chromosome6	82707547	A	0	*	*	0	*	*	2	G.	Js	1	.	s	1	G	J
-Chromosome6	82715433	G	0	*	*	1	T	s	2	t,	Jk	1	.	J	0	*	*
-Chromosome6	82715448	G	0	*	*	1	A	s	2	a,	Jj	1	T	J	0	*	*
-Chromosome6	82739737	A	5	..-2GGG..	JJJsF	0	*	*	0	*	*	1	.	s	1	G	J
-Chromosome6	82800252	C	0	*	*	2	t.	JJ	0	*	*	2	T.	Jo	1	.	s
-Chromosome6	82868393	A	1	g	J	2	g,	<J	0	*	*	0	*	*	2	,,	JJ
-Chromosome6	82904412	A	1	T	f	0	*	*	2	T,	oJ	1	.	J	3	..T	jss
-Chromosome6	82904423	G	1	a	J	0	*	*	2	,a	JJ	0	*	*	3	a,,	JJJ
-Chromosome6	82904429	A	1	g	J	0	*	*	2	,g	JJ	0	*	*	3	g,,	JJJ
-Chromosome6	82957053	C	1	.	F	1	.-3GGT	J	0	*	*	1	,-3ggt	J	0	*	*
-Chromosome6	82963360	C	2	T.	JA	0	*	*	2	.A	J7	1	.	J	0	*	*
-Chromosome6	82963393	C	2	A.	AF	0	*	*	2	T.	sF	1	.	J	0	*	*
-Chromosome6	83034576	T	1	.	F	0	*	*	2	CC	FF	0	*	*	3	C..	FFF
-Chromosome6	83034592	A	1	G	J	0	*	*	2	..	JJ	0	*	*	3	.GG	JJJ
-Chromosome6	83034624	G	1	.	J	0	*	*	2	A.	JJ	0	*	*	3	A..	JJJ
-Chromosome6	83034750	A	1	g	J	0	*	*	2	,,	JJ	0	*	*	4	g,gg	AJJJ
-Chromosome6	83034751	A	1	g	J	0	*	*	2	,,	JJ	0	*	*	4	g,gg	AJJJ
-Chromosome6	83034814	T	1	a	F	0	*	*	2	,,	JJ	0	*	*	4	a,aa	AJJJ
-Chromosome6	83075808	A	1	.	J	0	*	*	0	*	*	1	.-1G	G	1	.-1G	G
-Chromosome6	83119965	T	0	*	*	1	A	J	0	*	*	1	*	>	4	A..A	JFJJ
-Chromosome6	83174735	C	3	t,,	JJ7	0	*	*	4	,aa,	JJJ<	0	*	*	3	,,,	JAJ
-Chromosome6	83174764	A	3	,gg	JJ7	1	,	F	4	gg,,	JJJF	0	*	*	2	gg	JJ
-Chromosome6	83244934	G	0	*	*	0	*	*	2	T.	FF	1	.	F	1	A	?
-Chromosome6	83245011	G	0	*	*	0	*	*	3	A..	FJJ	1	.	A	2	..-1A	FJ
-Chromosome6	83367639	G	1	.	J	0	*	*	2	.A	JJ	4	.A..	JJVs	0	*	*
-Chromosome6	83367651	C	1	G	J	0	*	*	2	..	JJ	4	..G.	JJos	0	*	*
-Chromosome6	83367710	T	1	,	J	0	*	*	2	cc	JJ	4	,.c,	JsJJ	0	*	*
-Chromosome6	83367745	G	1	,	J	0	*	*	2	,-1t,-1t	JJ	4	,.,-1t,	JsFF	0	*	*
-Chromosome6	83367755	G	1	,	J	0	*	*	2	t,	JJ	3	.t,	sJ<	0	*	*
-Chromosome6	83367757	C	1	,	J	0	*	*	2	g,	JJ	3	.ga	sF7	0	*	*
-Chromosome6	83367758	G	1	,	J	0	*	*	2	aa	JF	3	.a,	sJJ	0	*	*
-Chromosome6	83367785	T	1	,	F	0	*	*	2	gg	JJ	3	.g,	sJA	0	*	*
-Chromosome6	83367813	G	1	,	J	0	*	*	2	,-5gcttt,	;J	2	,-5gcttt,	;7	0	*	*
-Chromosome6	83373899	A	0	*	*	1	.-3GAC	K	1	.-3GAC	K	0	*	*	1	.-3GAC	K
-Chromosome6	83376318	G	0	*	*	1	.-1A	R	1	.-1A	s	0	*	*	1	.-1A	s
-Chromosome6	83452696	T	0	*	*	1	C	s	0	*	*	2	.c	sJ	2	C.	JJ
-Chromosome6	83452697	A	0	*	*	1	G	o	0	*	*	2	.g	sJ	2	G.	JJ
-Chromosome6	83452703	T	0	*	*	1	C	k	0	*	*	2	.c	sJ	2	C.	JJ
-Chromosome6	83452757	C	0	*	*	1	,-1t	J	1	,-1t	J	2	.,	oJ	2	.,-1t	sJ
-Chromosome6	83452784	A	0	*	*	0	*	*	1	,-1t	I	2	.,	sJ	2	.,-1t	sI
-Chromosome6	83452793	G	0	*	*	0	*	*	1	a	J	1	,	J	2	.a	jJ
-Chromosome6	83507046	T	3	G.G	JJJ	0	*	*	3	GG.	JJJ	1	.	J	4	.GGG	JJJJ
-Chromosome6	83540916	A	0	*	*	0	*	*	1	,	J	2	g,	JJ	1	g	J
-Chromosome6	83561671	A	1	g	J	0	*	*	0	*	*	2	g,	J7	1	,	J
-Chromosome6	83562932	G	2	,-1t,	JJ	0	*	*	1	.	M	0	*	*	1	,-1t	J
-Chromosome6	83590502	A	0	*	*	1	c	J	2	c,	JJ	0	*	*	2	,,	J<
-Chromosome6	83689470	A	0	*	*	1	^].	<	2	.-1T.	<J	0	*	*	3	.-1T..	JJJ
-Chromosome6	83689780	A	0	*	*	1	g	J	2	,g	JJ	0	*	*	3	gg,	JJ<
-Chromosome6	83689802	C	0	*	*	1	a	J	2	,a	JJ	0	*	*	3	aa,	JJF
-Chromosome6	83689844	G	0	*	*	1	,	F	2	t,	JJ	0	*	*	3	,,t	FF<
-Chromosome6	83689858	G	0	*	*	1	,	J	2	a,	J<	0	*	*	3	,,a	JJF
-Chromosome6	83689873	G	0	*	*	1	c	J	2	,c	JJ	0	*	*	3	cc,	JFA
-Chromosome6	83689885	A	0	*	*	1	,	J	2	,-1t,	>J	0	*	*	3	,,,-1t	JJF
-Chromosome6	83761695	T	1	.-1G	>	1	.-1G	k	0	*	*	1	.-1G	A	0	*	*
-Chromosome6	83768833	A	2	G.	AJ	0	*	*	2	G.	JJ	0	*	*	1	.	J
-Chromosome6	83768893	T	2	C.	FJ	0	*	*	2	C.	JF	0	*	*	1	.	J
-Chromosome6	83769227	C	2	,a	F7	0	*	*	2	,a	JJ	0	*	*	1	a	A
-Chromosome6	83769257	T	2	a,	<J	0	*	*	2	a,	JJ	0	*	*	1	,	F
-Chromosome6	84012672	T	1	G	F	3	...	JFJ	0	*	*	0	*	*	2	G.	JF
-Chromosome6	84203601	C	0	*	*	0	*	*	3	..T	JJJ	1	.	J	1	T	J
-Chromosome6	84203609	T	0	*	*	0	*	*	3	..C	JJJ	1	.	J	1	C	J
-Chromosome6	84203620	A	0	*	*	0	*	*	3	..G	JJJ	1	.	J	1	G	J
-Chromosome6	84203627	T	0	*	*	0	*	*	3	..A	JJJ	1	.	A	1	A	J
-Chromosome6	84203656	A	0	*	*	0	*	*	3	..C	JJJ	1	.	J	1	C	J
-Chromosome6	84203663	A	0	*	*	0	*	*	3	..T	JJF	1	.	J	1	T	J
-Chromosome6	84203688	T	0	*	*	0	*	*	3	..C	ses	1	.	s	1	C	s
-Chromosome6	84203762	G	0	*	*	0	*	*	3	,,a	JJA	1	,	J	1	a	J
-Chromosome6	84203809	T	0	*	*	0	*	*	3	,,c	JJJ	1	,	J	1	c	J
-Chromosome6	84275441	G	3	.A.	JJA	0	*	*	3	...	JJJ	2	.A	JF	2	.A	JJ
-Chromosome6	84448215	A	0	*	*	2	T.	ss	1	.	s	2	.T	os	0	*	*
-Chromosome6	84448261	T	0	*	*	2	.c	oJ	1	.	s	2	.c	oJ	0	*	*
-Chromosome6	84451561	G	2	A.	JJ	1	.	J	1	T	J	0	*	*	0	*	*
-Chromosome6	84451564	A	2	T.	JJ	1	.	J	1	T	J	0	*	*	0	*	*
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-Chromosome6	84463362	C	0	*	*	1	A	o	2	A.	ss	1	.	s	0	*	*
-Chromosome6	84476097	C	1	,	A	0	*	*	1	,-1t	J	1	,-1t	A	0	*	*
-Chromosome6	84497117	A	1	.	J	0	*	*	1	T	J	0	*	*	3	..T	JJo
-Chromosome6	84518688	T	1	c	J	2	,,	JJ	3	c,,	J<J	0	*	*	0	*	*
-Chromosome6	84579603	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	JJ
-Chromosome6	84579814	T	0	*	*	0	*	*	1	,	J	1	c	J	2	,c	JJ
-Chromosome6	84665623	A	0	*	*	0	*	*	1	.	F	1	G	<	2	.G	JJ
-Chromosome6	84665893	A	0	*	*	0	*	*	1	,	J	1	,-3att	8	2	,,-3att	F8
-Chromosome6	84755133	A	0	*	*	0	*	*	1	.	s	1	G	s	2	G.	ss
-Chromosome6	84755148	C	0	*	*	0	*	*	1	.	o	1	T	s	2	T.	ss
-Chromosome6	84755176	G	0	*	*	0	*	*	1	.	j	1	C	s	2	C.	oo
-Chromosome6	84785207	T	0	*	*	0	*	*	1	.-1C	e	1	,-1c	e	1	.	5
-Chromosome6	85096098	T	1	.	j	3	.A.	s5s	0	*	*	1	A	?	0	*	*
-Chromosome6	85096168	T	0	*	*	0	*	*	1	.-1A	J	1	.	V	2	..-1A	JF
-Chromosome6	85096233	C	0	*	*	0	*	*	1	.	J	1	.-6AAAAAA	V	3	.-2AA.-5AAAAA.	JJF
-Chromosome6	85120433	G	0	*	*	1	.	J	2	A.	JJ	0	*	*	1	A	J
-Chromosome6	85120438	C	0	*	*	1	.	J	2	T.	JJ	0	*	*	1	T	J
-Chromosome6	85120486	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
-Chromosome6	85120523	T	0	*	*	1	.	J	2	.-1A.	JJ	0	*	*	1	.-1A	J
-Chromosome6	85120537	T	0	*	*	1	.	J	2	C.	JJ	0	*	*	1	C	J
-Chromosome6	85120745	G	0	*	*	1	a	J	2	,,	JJ	0	*	*	1	,-1a	J
-Chromosome6	85120759	T	0	*	*	1	,	F	2	c,	JJ	0	*	*	1	c	J
-Chromosome6	85120790	A	0	*	*	1	,	J	2	c,	AJ	0	*	*	1	c	J
-Chromosome6	85195779	C	1	A	F	0	*	*	0	*	*	1	.	J	2	.T	JA
-Chromosome6	85274528	A	0	*	*	1	g	<	0	*	*	1	,	J	4	,gg,	JJJJ
-Chromosome6	85278628	G	0	*	*	3	.AA	fJJ	1	A	J	0	*	*	1	.	J
-Chromosome6	85278672	C	0	*	*	3	.TT	sss	1	T	s	0	*	*	1	.	J
-Chromosome6	85282418	T	0	*	*	0	*	*	2	,c	7F	1	,	J	1	c	G
-Chromosome6	85285955	A	1	.	A	0	*	*	2	..-4GCTC	JJ	1	.-4GCTC	J	0	*	*
-Chromosome6	85285970	T	1	.	J	0	*	*	2	.C	J>	1	C	:	0	*	*
-Chromosome6	85286221	G	1	,-4tcga	J	0	*	*	3	.-4TCGA,-4tcga,-4tcga	S::	1	,-4tcga	F	0	*	*
-Chromosome6	85298062	G	1	.	J	2	A.	Js	0	*	*	1	A	J	0	*	*
-Chromosome6	85470834	G	0	*	*	0	*	*	1	.	J	1	C	J	2	.C	FA
-Chromosome6	85590837	G	1	.	J	1	C	s	0	*	*	0	*	*	2	.C	JJ
-Chromosome6	85778217	G	2	,,	JJ	0	*	*	0	*	*	2	a,	JJ	2	aa	AJ
-Chromosome6	85793975	G	0	*	*	0	*	*	4	A.AA	FFFA	2	A.	<<	1	.	F
-Chromosome6	85887688	T	1	,	J	1	c	J	0	*	*	0	*	*	5	,c,,,	JJAFJ
-Chromosome6	86371403	A	0	*	*	2	G.+1G	JE	0	*	*	2	T.	JJ	2	G.	JJ
-Chromosome6	86371758	G	0	*	*	2	,a	AJ	0	*	*	2	,,	JJ	2	,a	JJ
-Chromosome6	86390729	A	2	,t	JJ	1	c	J	2	t,	JA	2	tt	JJ	3	t,,	FJJ
-Chromosome6	86449705	C	2	.T	AJ	1	T	e	0	*	*	0	*	*	1	.	J
-Chromosome6	86588906	G	2	.A	J<	0	*	*	2	A.	AA	0	*	*	6	......	F7JJJJ
-Chromosome6	86588935	C	3	T..	FFA	0	*	*	2	..	AF	1	T	J	5	.T...	AJJ<F
-Chromosome6	86588951	A	3	G..	JJ7	0	*	*	1	.	J	1	G	J	5	.G...	JJJJJ
-Chromosome6	86589374	C	3	tt,	F7J	0	*	*	2	,,	JA	0	*	*	6	,,t,,,	<J7FJF
-Chromosome6	86590641	G	1	t	J	0	*	*	2	,a	J7	0	*	*	2	,,	AJ
-Chromosome6	86592029	G	2	A.	JJ	0	*	*	0	*	*	1	.	J	2	A.	JJ
-Chromosome6	86593308	G	2	..	ss	1	A	`	0	*	*	0	*	*	2	A.	`j
-Chromosome6	86593368	C	2	,t	JJ	1	t	J	0	*	*	0	*	*	2	,,	JJ
-Chromosome6	86817430	A	0	*	*	0	*	*	2	g,	JJ	1	,	J	1	g	J
-Chromosome6	86817431	T	0	*	*	0	*	*	2	c,	7J	1	,	J	1	c	J
-Chromosome6	86848867	T	1	,	A	2	,-1g,	JJ	0	*	*	1	,-1g	J	0	*	*
-Chromosome6	87083236	A	1	g	J	1	,	J	0	*	*	0	*	*	3	,,g	JJJ
-Chromosome6	87123900	A	1	.	J	0	*	*	2	GG	sj	0	*	*	2	G.	JJ
-Chromosome6	87124191	T	1	g	J	0	*	*	0	*	*	1	,	J	2	,g	FJ
-Chromosome6	87173671	C	0	*	*	1	.	j	1	T	J	0	*	*	3	T..	JJF
-Chromosome6	87173701	A	0	*	*	1	.	`	1	G	F	0	*	*	2	G.	<7
-Chromosome6	87174140	C	1	,	J	0	*	*	1	g	<	0	*	*	2	,t	<C
-Chromosome6	87174156	C	1	,	J	0	*	*	1	t	F	0	*	*	3	,,t	JJF
-Chromosome6	87299333	T	1	,	J	2	,c	JF	1	c	J	0	*	*	0	*	*
-Chromosome6	87299415	A	1	,	J	2	,g	JJ	1	g	J	0	*	*	0	*	*
-Chromosome6	87309846	C	0	*	*	1	.	o	1	.-1G	E	1	.-1G	F	0	*	*
-Chromosome6	87310528	T	1	.-2TG	U	0	*	*	1	.-2TG	;	0	*	*	1	.-2TG	;
-Chromosome6	87313086	G	0	*	*	1	.-1A	J	1	.-1A	J	1	.-1A	F	1	.-1A	A
-Chromosome6	87313261	G	0	*	*	0	*	*	1	,-2ga	6	1	,	F	1	,-2ga	6
-Chromosome6	87646922	C	0	*	*	1	,	s	1	.-4CAAG	5	1	.-4CAAG	I	0	*	*
-Chromosome6	87771982	G	0	*	*	0	*	*	3	,tt	JJJ	1	T	s	2	,t	JJ
-Chromosome6	87776233	A	2	.G	JJ	0	*	*	2	..	JJ	1	G	J	0	*	*
-Chromosome6	87776255	G	2	.-1A.-2AA	JJ	0	*	*	2	.-1A.-1A	JJ	1	.-2AA	J	0	*	*
-Chromosome6	87869912	T	2	C.	7F	1	C	<	0	*	*	0	*	*	1	.	J
-Chromosome6	87876612	A	2	.G	sJ	0	*	*	1	.	F	1	G	J	0	*	*
-Chromosome6	87876617	A	2	.G	sJ	0	*	*	1	.	J	1	G	F	0	*	*
-Chromosome6	87876621	G	2	.A	oJ	0	*	*	1	.	F	1	A	A	0	*	*
-Chromosome6	87913753	G	6	.A....	JJJJJJ	10	........A.	JJJJF7JJJJ	12	........A...	JJJJJJJJJJJJ	2	T.	JJ	18	...A..A....A......	JFJJJJJJFJJJJJJJJJ
-Chromosome6	87913770	G	6	....T.	JJJJJJ	10	.........A	JJJJJ<JJJJ	11	...T....AAA	JJJJJJJJJJJ	2	.T	JJ	18	.T......A.........	FJJJJJJFJJJJJJJJJJ
-Chromosome6	87979342	C	1	g	J	1	.	s	2	.g	sJ	0	*	*	0	*	*
-Chromosome6	87979370	T	1	c	J	1	.	s	2	.c	sJ	0	*	*	0	*	*
-Chromosome6	87988513	A	0	*	*	1	.	s	2	.G	JJ	2	GG	JJ	0	*	*
-Chromosome6	87988514	C	0	*	*	1	.	s	2	.T	<J	2	TT	JJ	0	*	*
-Chromosome6	87988525	C	0	*	*	1	.	s	2	..-2AT	<J	2	.-2AT.-2AT	JJ	0	*	*
-Chromosome6	87988554	C	0	*	*	1	.	s	2	.T	FJ	2	TT	JJ	0	*	*
-Chromosome6	87988572	A	0	*	*	1	G	s	2	G.	JJ	2	..	so	0	*	*
-Chromosome6	87988581	G	0	*	*	1	A	j	2	A.	AJ	2	..	so	0	*	*
-Chromosome6	87993044	G	1	.	J	1	A	J	2	A.	JJ	0	*	*	0	*	*
-Chromosome6	87993202	T	1	,	J	1	g	J	2	g,	JJ	0	*	*	0	*	*
-Chromosome6	88062599	A	1	.	J	0	*	*	1	.-1C	J	1	.-1C	J	0	*	*
-Chromosome6	88202346	C	0	*	*	1	.	s	2	.T	js	1	T	s	0	*	*
-Chromosome6	88202373	G	0	*	*	1	C	o	2	C.	ss	1	.	s	0	*	*
-Chromosome6	88202374	C	0	*	*	1	.	s	2	.T	ss	1	T	s	0	*	*
-Chromosome6	88202399	T	0	*	*	1	.	`	2	,c	FJ	1	c	J	0	*	*
-Chromosome6	88271629	C	1	,	J	1	t	J	2	,t	JJ	0	*	*	0	*	*
-Chromosome6	88312608	C	0	*	*	0	*	*	2	.T	s7	1	T	s	1	.	F
-Chromosome6	88626506	G	1	*	?	1	.	F	0	*	*	0	*	*	1	.-4GACT	:
-Chromosome6	88629732	A	1	C	J	0	*	*	4	CC.,	JFJs	2	C.	JJ	0	*	*
-Chromosome6	88629747	G	1	A	J	0	*	*	4	AA.,	JJJs	2	A.	FJ	0	*	*
-Chromosome6	88629931	A	1	g	<	0	*	*	3	gg,	JJJ	2	,g	JJ	0	*	*
-Chromosome6	88713416	A	1	G	J	0	*	*	2	.G	JJ	0	*	*	2	G.	JJ
-Chromosome6	88713527	C	1	.	F	0	*	*	2	.T	JE	0	*	*	2	T.	EJ
-Chromosome6	88713721	C	1	,	J	0	*	*	2	,t	JJ	0	*	*	2	t,	JJ
-Chromosome6	89101944	T	4	C...	JJJA	0	*	*	0	*	*	1	.	s	3	..C	JkF
-Chromosome6	89320906	C	1	.-3AGT	F	1	.-3AGT	J	1	.	J	0	*	*	0	*	*
-Chromosome6	89474657	C	0	*	*	1	.-1A	J	1	.-1A	J	0	*	*	1	.-1A	F
-Chromosome6	89505601	T	2	C.	JJ	1	.	A	0	*	*	0	*	*	2	.C	JJ
-Chromosome6	89523999	C	3	.T.	JJJ	0	*	*	1	.	J	0	*	*	1	T	<
-Chromosome6	89584125	A	0	*	*	1	t	J	0	*	*	1	g	J	2	.g	sJ
-Chromosome6	89678869	G	2	,a	JJ	1	a	J	0	*	*	1	,	J	0	*	*
-Chromosome6	89731579	C	0	*	*	0	*	*	1	t	J	1	.	j	2	.t	oJ
-Chromosome6	89731629	G	0	*	*	0	*	*	1	,	J	1	a	F	2	c,	JJ
-Chromosome6	89731687	T	0	*	*	0	*	*	1	,	J	1	c	J	2	*,	HJ
-Chromosome6	89731693	C	0	*	*	0	*	*	1	t	J	1	,	A	2	,t	FJ
-Chromosome6	89821080	T	4	C.CC	FJJJ	4	CC.C	JJJJ	2	..	JJ	5	C..C.	JJFJJ	14	.C...CCC....CC	JJJJJJJFJJJJJJ
-Chromosome6	89821108	T	4	...C	7JJJ	4	CC.C	JAJJ	2	..	JJ	5	..C..	JJJJJ	14	.CCCC...C.CC.C	JJJJFJJJAFJJAJ
-Chromosome6	89959201	A	1	.	J	3	..G	JJJ	0	*	*	0	*	*	1	G	J
-Chromosome6	89959206	G	1	A	J	3	A..	JJJ	0	*	*	0	*	*	1	.	J
-Chromosome6	90360796	T	0	*	*	1	C	J	0	*	*	3	.C.	FJJ	1	.	J
-Chromosome6	90676701	T	0	*	*	1	,	A	1	g	F	2	g,	FF	0	*	*
-Chromosome6	90732341	C	0	*	*	1	g	F	1	,	J	2	,g	sJ	0	*	*
-Chromosome6	90752757	A	1	T	J	2	.T	7F	0	*	*	2	..	AF	0	*	*
-Chromosome6	90753046	G	1	t	J	2	,t	JJ	0	*	*	3	,,,	JJJ	0	*	*
-Chromosome6	90798404	A	0	*	*	0	*	*	1	.	s	2	.C	JJ	1	C	J
-Chromosome6	90798411	A	0	*	*	0	*	*	1	G	s	2	G.	JJ	1	.	F
-Chromosome6	90798431	C	0	*	*	0	*	*	1	.	s	2	.T	JJ	1	T	J
-Chromosome6	90798459	G	0	*	*	0	*	*	1	.	s	2	.C	Js	1	T	F
-Chromosome6	90798470	G	0	*	*	0	*	*	1	.	s	2	.C	Js	1	C	J
-Chromosome6	90798472	G	0	*	*	0	*	*	1	.	s	2	.A	Js	1	A	J
-Chromosome6	90899333	G	0	*	*	2	A.	sJ	1	.	F	1	A	J	0	*	*
-Chromosome6	90981116	G	1	.	J	0	*	*	0	*	*	2	.T	s:	1	T	>
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-Chromosome6	91060620	A	0	*	*	1	T	J	3	TTC	JJJ	1	.	J	0	*	*
-Chromosome6	91078615	C	2	t,	7J	0	*	*	1	,	J	0	*	*	3	t,,	FJJ
-Chromosome6	91078630	T	2	cc	JJ	0	*	*	1	,	J	0	*	*	3	,c,	A<J
-Chromosome6	91079851	C	1	,	@	2	t,	JJ	0	*	*	0	*	*	1	t	J
-Chromosome6	91105279	G	1	.-2AT	s	1	,-2at	J	0	*	*	1	,-2at	F	0	*	*
-Chromosome6	91271711	A	1	.-1T	J	0	*	*	0	*	*	1	.	J	1	.-1T	J
-Chromosome6	91338690	G	1	.-1A	J	1	.	J	2	.-1A.-1A	Ja	1	.-1A	o	0	*	*
-Chromosome6	91548052	C	0	*	*	3	.T.	sss	2	..	ss	0	*	*	2	.T	sj
-Chromosome6	91548079	C	0	*	*	3	gt,	JJJ	2	,t	JB	0	*	*	2	t,	JJ
-Chromosome6	91548083	C	0	*	*	3	,,-1t,	JJJ	2	,-1t,	JJ	0	*	*	2	,,	JJ
-Chromosome6	91725169	A	0	*	*	1	.	F	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome6	91828514	C	1	.	J	0	*	*	2	T.	JF	0	*	*	1	T	J
-Chromosome6	92143205	A	1	.-2GG	A	1	.	s	0	*	*	3	..-2GG.-2GG	sJJ	4	...-2GG.-2GG	ssJJ
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-Chromosome6	92143207	G	1	*	<	1	.	s	0	*	*	3	.**	oJJ	4	..**	ssJJ
-Chromosome6	92143232	C	0	*	*	1	.	s	0	*	*	3	.TT	oJJ	4	T.TT	osJJ
-Chromosome6	92332290	G	2	A.	JJ	0	*	*	2	.A	JJ	2	A.	JF	2	A.	J<
-Chromosome6	92332596	A	2	,t	JJ	0	*	*	2	,,	FJ	2	g,	JF	2	g,	JJ
-Chromosome6	92332628	C	2	,a	JJ	0	*	*	2	,,	JJ	2	t,	FJ	2	t,	JJ
-Chromosome6	92332635	T	2	gg	JJ	0	*	*	2	,,	JJ	2	cg	JJ	2	cg	JJ
-Chromosome6	92575231	C	1	,-1t	J	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*
-Chromosome6	92638751	G	3	A..	sJJ	1	A	k	0	*	*	1	.	J	0	*	*
-Chromosome6	92771476	G	1	.	J	2	.T	JA	1	A	F	0	*	*	0	*	*
-Chromosome6	92771677	G	1	,-1t	J	2	,-1t,	JJ	1	,	J	0	*	*	0	*	*
-Chromosome6	92803228	C	0	*	*	0	*	*	1	,	J	3	T,,	kJJ	4	,,t,	JJJJ
-Chromosome6	92803250	T	1	c	J	0	*	*	0	*	*	5	,,,,c	FAJJJ	5	,,,,,	JJJJF
-Chromosome6	92805067	A	1	,	J	0	*	*	1	*	A	0	*	*	2	,g	JJ
-Chromosome6	92882368	C	0	*	*	1	t	J	1	A	U	0	*	*	2	A.	f9
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-Chromosome6	92897796	C	1	.	J	1	T	J	0	*	*	2	,T	JJ	0	*	*
-Chromosome6	92897809	G	1	.	<	1	A	s	0	*	*	2	,A	JJ	0	*	*
-Chromosome6	92945665	C	0	*	*	2	.A	so	2	..	fs	2	A,	oF	0	*	*
-Chromosome6	92945726	A	0	*	*	2	G.	so	2	.G	js	2	.,	sF	0	*	*
-Chromosome6	93014266	A	1	G	o	1	,	s	0	*	*	0	*	*	3	GG.	fRs
-Chromosome6	93132887	T	2	c,	<J	0	*	*	0	*	*	1	c	J	2	.,	oJ
-Chromosome6	93200289	A	0	*	*	1	,-1t	<	0	*	*	1	,-1t	J	1	,	J
-Chromosome6	93264112	C	0	*	*	0	*	*	2	G,	JJ	1	g	F	1	,	J
-Chromosome6	93331265	A	0	*	*	2	.G	JJ	1	G	J	1	.	J	0	*	*
-Chromosome6	93331270	T	0	*	*	2	.C	JJ	1	C	J	1	.	J	0	*	*
-Chromosome6	93331280	T	0	*	*	2	.C	JJ	1	C	J	1	.	J	0	*	*
-Chromosome6	93331335	G	0	*	*	2	..-1A	si	1	.-1A	i	1	.	s	0	*	*
-Chromosome6	93331336	A	0	*	*	2	.*	si	1	*	i	1	.	s	0	*	*
-Chromosome6	93331343	C	0	*	*	2	.T	ss	1	T	j	1	.	s	0	*	*
-Chromosome6	93331362	C	0	*	*	2	..-4CGCG	sM	1	.-4CGCG	M	1	.	s	0	*	*
-Chromosome6	93567559	G	0	*	*	1	.	J	2	TC	sJ	1	C	7	0	*	*
-Chromosome6	93658203	G	0	*	*	3	.A.	o`s	2	.A	s`	1	.	s	0	*	*
-Chromosome6	93686709	T	0	*	*	1	a	J	2	,,	JJ	1	g	J	2	,a	JJ
-Chromosome6	93762312	C	1	T	p	0	*	*	0	*	*	1	.	o	2	T.	ps
-Chromosome6	93884828	G	1	.	J	2	..-2AA	JJ	0	*	*	0	*	*	1	.-2AA	J
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-Chromosome6	94122780	C	0	*	*	1	,$	A	2	,T	Js	1	T	j	0	*	*
-Chromosome6	94247040	A	0	*	*	1	.-1T	J	1	.-1T	J	0	*	*	2	..	FF
-Chromosome6	94302592	C	0	*	*	1	,-2ta	J	1	,-2ta	A	1	,	<	0	*	*
-Chromosome6	94466858	A	2	,t	JJ	4	,.,,	AoF<	0	*	*	0	*	*	2	t,	J7
-Chromosome6	94466893	A	3	,t,	JJJ	4	,.,,	JkJJ	0	*	*	0	*	*	2	t,	JF
-Chromosome6	94567692	C	1	.$	b	0	*	*	0	*	*	2	.$a	gJ	1	a	J
-Chromosome6	94660201	C	0	*	*	1	T	o	1	.	s	2	t.	sj	0	*	*
-Chromosome6	94674963	A	0	*	*	0	*	*	1	.	s	2	T.	sJ	1	T	7
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-Chromosome6	94824874	A	1	.	J	1	G	J	0	*	*	2	.G	JF	0	*	*
-Chromosome6	94824934	C	1	.	F	1	T	<	0	*	*	2	.T	JF	0	*	*
-Chromosome6	94825119	T	1	,	J	1	g	J	0	*	*	2	,g	JF	0	*	*
-Chromosome6	94825173	A	1	,	J	1	g	J	0	*	*	2	,g	JJ	0	*	*
-Chromosome6	94829894	A	1	.-8TTAGAAGT	8	0	*	*	1	.-8TTAGAAGT	O	0	*	*	1	.-8TTAGAAGT	O
-Chromosome6	94836157	T	0	*	*	1	.	F	1	.-2TA	5	0	*	*	2	.-2TA.-2TA	55
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-Chromosome6	100712576	C	3	A.A	JJJ	1	A	J	0	*	*	4	.AA.	FFAJ	3	...	JFJ
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-Chromosome6	110395125	C	1	.	<	0	*	*	2	.T	JJ	0	*	*	1	T	J
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-Chromosome6	110395188	G	1	T	J	0	*	*	2	T.	JJ	0	*	*	1	.	J
-Chromosome6	110395367	G	1	a	<	0	*	*	2	a,	JJ	0	*	*	2	,,	FJ
-Chromosome6	110395397	T	1	c	J	0	*	*	2	c,	JF	0	*	*	2	,,	J7
-Chromosome6	110395416	G	1	,	F	0	*	*	2	,c	JJ	0	*	*	2	c,	JJ
-Chromosome6	110532561	G	0	*	*	1	,	J	2	,a	JJ	1	a	J	0	*	*
-Chromosome6	110536091	T	1	,-1g	A	0	*	*	1	,-1g	s	4	,,,,	FFss	0	*	*
-Chromosome6	110536126	A	1	,	A	0	*	*	1	t	o	5	,,t,,	<JJss	0	*	*
-Chromosome6	110536145	A	1	,	7	0	*	*	2	,+1t.+1T	AF	4	,,,+1t,	JJFs	0	*	*
-Chromosome6	110536161	A	1	,	J	0	*	*	1	g	s	5	,,gt,	JJJss	0	*	*
-Chromosome6	110740473	A	2	,,	JJ	0	*	*	1	t	J	2	t,	JJ	2	,g	FF
-Chromosome6	110920087	G	0	*	*	0	*	*	3	C..	JJJ	1	.	J	1	C	7
-Chromosome6	110920093	T	0	*	*	0	*	*	3	C..	JJJ	1	.	F	1	C	J
-Chromosome6	111023850	G	1	.	J	0	*	*	1	.-12AGCGGCCGTACC	H	0	*	*	1	.-12AGCGGCCGTACC	G
-Chromosome6	111029443	T	2	.G	JJ	1	.	J	1	G	J	0	*	*	0	*	*
-Chromosome6	111206805	C	1	.-1T	F	1	.-1T	s	1	.-1T	s	0	*	*	0	*	*
-Chromosome6	111317665	G	1	T	A	0	*	*	3	T..	JJF	0	*	*	2	.T	JF
-Chromosome6	111317836	T	1	c	A	0	*	*	3	,c,	FJJ	0	*	*	2	c,	FJ
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-Chromosome6	111479059	T	0	*	*	1	.	J	1	C	F	0	*	*	2	C.	JF
-Chromosome6	111479234	C	0	*	*	1	g	J	1	,	J	0	*	*	2	,g	JF
-Chromosome6	111697031	A	1	G	J	0	*	*	0	*	*	1	.	J	2	.G	JJ
-Chromosome6	111697046	C	1	A	F	0	*	*	0	*	*	1	.	J	2	.A	JJ
-Chromosome6	111697058	A	1	G	J	0	*	*	0	*	*	1	.	A	2	.G	JJ
-Chromosome6	111697063	C	1	A	J	0	*	*	0	*	*	1	.	F	2	.A	JF
-Chromosome6	111697084	C	1	T	J	0	*	*	0	*	*	1	.	J	2	.T	JJ
-Chromosome6	111697086	A	1	.	J	0	*	*	0	*	*	1	.-6TGTCTC	J	2	.-6TGTCTC.	JA
-Chromosome6	111697118	C	1	T	J	0	*	*	0	*	*	1	.	J	2	.T	JJ
-Chromosome6	111768852	T	1	.	J	2	.G	JJ	3	..G	JJJ	0	*	*	0	*	*
-Chromosome6	111769008	A	1	g	J	2	,,	JJ	3	,,g	JJJ	0	*	*	0	*	*
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-Chromosome6	112005951	C	0	*	*	0	*	*	1	,	J	3	..T	FJJ	4	..T.	JJJJ
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-Chromosome6	112005980	G	0	*	*	0	*	*	1	,	J	3	..T	kso	4	.-1C...	ksos
-Chromosome6	112006012	G	0	*	*	0	*	*	1	,	J	3	C..	oss	4	.C..	osos
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-Chromosome6	112208725	T	0	*	*	0	*	*	1	C	J	1	,	s	2	,C	sJ
-Chromosome6	112208744	T	0	*	*	0	*	*	1	A	s	1	,	s	2	,A	ss
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-Chromosome6	112208829	A	0	*	*	0	*	*	1	G	s	1	,	s	2	,G	ss
-Chromosome6	112265580	C	1	T	F	1	,	s	2	.T	FF	0	*	*	0	*	*
-Chromosome6	112504393	G	2	.T	JJ	0	*	*	0	*	*	1	.	s	1	T	F
-Chromosome6	112545871	C	1	.-2TT	J	1	.-2TT	J	0	*	*	2	.-2TT,-2tt	JF	0	*	*
-Chromosome6	112545930	C	1	.	J	1	,-16gcatataactctaagt	6	0	*	*	2	G.	ss	0	*	*
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-Chromosome6	112657727	C	0	*	*	0	*	*	1	.	s	1	A	o	3	..A	sss
-Chromosome6	112657733	C	0	*	*	0	*	*	1	.	s	1	A	s	3	..A	sss
-Chromosome6	112681195	T	1	.	J	0	*	*	0	*	*	4	C...	JJJj	2	.C	JJ
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-Chromosome6	112890090	A	1	.	J	1	C	J	0	*	*	0	*	*	2	.$C	<J
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-Chromosome6	113074803	T	0	*	*	2	,c	J7	1	c	F	0	*	*	1	,	J
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-Chromosome6	113153059	G	1	.	J	0	*	*	1	A	J	3	AA.	JJJ	0	*	*
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-Chromosome6	113705273	C	0	*	*	2	.+2AT,+2at	JJ	2	.+2AT.+2AT	JJ	1	.+2AT	J	0	*	*
-Chromosome6	113856680	C	1	,-1a	J	1	.-1A	V	0	*	*	0	*	*	1	,-1a	J
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-Chromosome6	114251366	G	0	*	*	2	C.	JJ	1	C	J	0	*	*	2	..	JJ
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-Chromosome6	114380721	A	1	G	J	0	*	*	3	..G	ggJ	0	*	*	2	..	cn
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-Chromosome6	114699812	T	0	*	*	1	.	j	0	*	*	3	.cc	jJJ	2	cc	JJ
-Chromosome6	114943071	C	15	..,,,,,,,,,,,,t	js77JJFJJFJJ<FA	8	.,,,t,,,	sJFJJJJJ	10	.t,,,,,,,,	sJJAJFAJ<F	8	ta,,,,,,	JJJFFJAJ	17	,,,,,,,,,,,t,,,,,	JJJJJJJJJJJAFJFJ<
-Chromosome6	115003114	C	0	*	*	3	Tt.	fJs	2	,,	JJ	2	,t	JJ	0	*	*
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-Chromosome6	115397433	A	0	*	*	1	.-6CGGTGG	J	0	*	*	1	.-6CGGTGG	j	3	.-6CGGTGG..	FAJ
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-Chromosome6	117056203	G	6	,,,,,t	JJJJJA	5	t,,,,	FJJJJ	4	a,,,	JFFJ	7	,tt,,,,	JJFJJJJ	6	,,,,,,	JFJJJF
-Chromosome6	117081091	T	0	*	*	2	.C	JJ	1	.-2GA	J	1	.	J	0	*	*
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-Chromosome6	117984956	G	1	,	J	0	*	*	0	*	*	1	a	F	2	,a	JJ
-Chromosome6	118238689	C	0	*	*	3	.+1A.+1A.+1A	sss	1	.	s	2	.+1A.	Vo	0	*	*
-Chromosome6	118249804	A	3	.-1T.-1T.-1T	JJJ	1	.-1T	J	1	.-1T	F	0	*	*	0	*	*
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-Chromosome6	118249845	A	3	G..	JJJ	1	G	J	1	.	J	0	*	*	0	*	*
-Chromosome6	118249872	G	3	A..	FJJ	1	A	J	1	.	J	0	*	*	0	*	*
-Chromosome6	118249920	C	3	T..	aqq	1	T	s	1	,	F	0	*	*	0	*	*
-Chromosome6	118249921	T	3	.CC	Rhq	1	.	s	1	c	F	0	*	*	0	*	*
-Chromosome6	118296347	A	2	.G	JJ	0	*	*	2	.G	JJ	0	*	*	2	GG	JJ
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-Chromosome6	137286702	T	0	*	*	3	,cc	JJJ	0	*	*	2	C.	sJ	1	c	J
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-Chromosome6	142425239	A	3	CC.	A<J	0	*	*	2	C.	JJ	1	.	s	0	*	*
-Chromosome6	142460254	C	3	,g,	JJJ	0	*	*	0	*	*	1	,	J	1	t	J
-Chromosome6	142543606	G	0	*	*	1	a	A	2	a.	Fs	0	*	*	1	.	s
-Chromosome6	142543621	C	0	*	*	1	,-2gt	A	2	,-2gt.	Js	0	*	*	1	.-2GT	s
-Chromosome6	142588447	A	3	..G	ssJ	1	.	s	0	*	*	1	G	s	0	*	*
-Chromosome6	142588456	A	3	..C	ssF	1	.	s	0	*	*	1	C	s	0	*	*
-Chromosome6	142588496	T	3	,,c	JJJ	1	,	J	0	*	*	1	c	J	0	*	*
-Chromosome6	142627030	T	2	.C	JJ	1	.	J	2	C.	JJ	1	C	J	0	*	*
-Chromosome6	142627043	G	2	.A	JJ	1	.	<	2	A.	JJ	1	A	J	0	*	*
-Chromosome6	142627178	T	2	,a	JJ	1	,	F	2	a,	JJ	1	a	J	0	*	*
-Chromosome6	142627209	A	2	,g	JJ	1	,	J	2	g,	JJ	1	g	J	0	*	*
-Chromosome6	142641092	T	1	C	?	0	*	*	2	C.	J7	0	*	*	1	.	J
-Chromosome6	142641270	T	1	a	J	0	*	*	2	a.	Js	0	*	*	2	a,	JJ
-Chromosome6	142682351	G	1	.	F	0	*	*	1	C	<	0	*	*	2	C.	JJ
-Chromosome6	142682590	G	1	,	J	0	*	*	1	a	F	0	*	*	2	a,	JF
-Chromosome6	142682619	A	1	,	F	0	*	*	1	t	J	0	*	*	2	t,	JJ
-Chromosome6	142682651	C	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*	2	,-1t,-1t	JJ
-Chromosome6	142682677	G	1	,	J	0	*	*	1	a	F	0	*	*	2	a,	JJ
-Chromosome6	142682685	C	1	,	J	0	*	*	1	t	J	0	*	*	2	t,	JJ
-Chromosome6	142682713	T	1	,	J	0	*	*	1	,-1g	H	0	*	*	2	,-1g,	HJ
-Chromosome6	142682714	G	1	,	J	0	*	*	1	*	H	0	*	*	2	*,	HJ
-Chromosome6	142767745	C	9	,,,t,,,,,	JJJJJJJJJ	1	t	J	5	t,,,,	JJJFJ	1	,	J	5	t,,,,	JJJJJ
-Chromosome6	142863600	T	2	,-1g,-1g	JJ	2	,-1g,-1g	FF	3	,-1g,-1g,-1g	JJJ	0	*	*	2	,-1g,-1g	J<
-Chromosome6	142955321	A	1	c	J	0	*	*	0	*	*	3	,cc	JJJ	1	,	J
-Chromosome6	143060038	G	0	*	*	1	.	J	2	c.	Js	1	C	s	0	*	*
-Chromosome6	143198119	G	1	A	F	0	*	*	0	*	*	2	..	JJ	2	.A	FJ
-Chromosome6	143198141	T	1	G	J	0	*	*	0	*	*	2	..	JJ	2	.G	<J
-Chromosome6	143219661	G	0	*	*	1	T	J	3	TT.	JJJ	2	..	<J	3	T.T	JJJ
-Chromosome6	143346450	C	1	,-2ta	J	1	,	J	1	,-2ta	J	0	*	*	0	*	*
-Chromosome6	143398828	A	1	g	J	0	*	*	2	,$G	As	2	,g	J;	0	*	*
-Chromosome6	143443287	G	0	*	*	0	*	*	1	C	F	2	T.	JF	1	.	J
-Chromosome6	143443288	G	0	*	*	0	*	*	1	.	J	2	.C	JJ	1	C	J
-Chromosome6	143443318	G	0	*	*	0	*	*	1	T	J	2	.A	JJ	1	.	J
-Chromosome6	143443332	G	0	*	*	0	*	*	1	A	J	2	.T	JJ	1	.	J
-Chromosome6	143553267	A	2	,-1g,-1g	JJ	0	*	*	1	,-1g	A	1	,-1g	J	1	,-1g	J
-Chromosome6	143776589	G	0	*	*	3	...	JJJ	2	AA	JF	0	*	*	3	.AA	JJJ
-Chromosome6	143840284	T	0	*	*	0	*	*	1	C	J	2	..	JJ	3	.CC	JJJ
-Chromosome6	143840561	T	0	*	*	0	*	*	1	c	J	2	,c	<J	3	c,c	JJF
-Chromosome6	143888799	C	1	,	J	3	,a,	JJF	0	*	*	0	*	*	1	a	J
-Chromosome6	143904234	G	3	A.A	JJJ	1	.	s	0	*	*	0	*	*	1	A	F
-Chromosome6	143904996	C	1	a	J	2	,a	JJ	0	*	*	0	*	*	1	,	<
-Chromosome6	143906341	C	3	tt,	JJA	0	*	*	1	,	J	1	t	J	0	*	*
-Chromosome6	143907269	A	0	*	*	0	*	*	2	CC	JJ	1	.	J	2	.C	JJ
-Chromosome6	143936418	T	2	G.	JJ	1	G	J	8	..GGGGG.	JJJJJJJJ	2	..	JJ	4	.G.G	JFJJ
-Chromosome6	144064369	A	0	*	*	0	*	*	2	C.	Fs	1	C	J	2	C.	Fs
-Chromosome6	144064374	A	0	*	*	0	*	*	2	G.	Fs	1	G	J	2	..	Js
-Chromosome6	144064420	T	0	*	*	0	*	*	2	C.	os	1	C	`	2	..	js
-Chromosome6	144074161	T	0	*	*	1	c	J	2	.c	sF	0	*	*	1	,	J
-Chromosome6	144460526	T	2	..	JJ	0	*	*	2	.G	Js	0	*	*	3	G..	J7F
-Chromosome6	144460527	T	2	AA	FJ	0	*	*	2	..	Js	0	*	*	2	.A	JJ
-Chromosome6	144460552	G	2	..	JA	0	*	*	2	.A	Js	0	*	*	3	A..	JAF
-Chromosome6	144460570	G	2	..	JJ	0	*	*	2	.A	Js	0	*	*	3	A..	JAJ
-Chromosome6	144460573	G	2	..	JJ	0	*	*	2	.T	Js	0	*	*	2	T.	JJ
-Chromosome6	144460590	G	2	..	JA	0	*	*	2	.A	Js	0	*	*	3	A..	J7J
-Chromosome6	144460591	C	2	AA	JF	0	*	*	2	A.	Js	0	*	*	3	.AA	<F<
-Chromosome6	144487216	A	0	*	*	3	GG.	JJf	2	G.	FJ	2	..	JJ	0	*	*
-Chromosome6	144529523	C	1	,-6tatata	J	1	,	J	1	,-6tatata	J	0	*	*	2	,-6tatata,-6tatata	JJ
-Chromosome6	144639358	C	0	*	*	1	.	s	1	A	J	0	*	*	2	.A	sJ
-Chromosome6	144639359	T	0	*	*	1	.	s	1	A	J	0	*	*	2	.A	sJ
-Chromosome6	144639375	C	0	*	*	1	.	s	1	G	J	0	*	*	2	.G	sJ
-Chromosome6	144639416	A	0	*	*	1	,	J	1	T	J	0	*	*	2	,T	JJ
-Chromosome6	144719884	G	1	.-3GCA	O	1	.	s	0	*	*	0	*	*	2	,-3gca.-3GCA	OO
-Chromosome6	144776907	C	1	,	J	1	t	J	0	*	*	0	*	*	2	,-9acctgacaa,	CJ
-Chromosome6	144930712	C	0	*	*	1	.-1T	s	1	.-1T	s	1	.-1T	s	0	*	*
-Chromosome6	144930782	A	0	*	*	1	,-2ac	;	1	,-2ac	;	1	,-2ac	;	0	*	*
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-Chromosome6	145086537	A	0	*	*	1	G	J	2	G.	JJ	0	*	*	1	.	J
-Chromosome6	145104999	C	1	t	J	0	*	*	2	t,	JJ	2	,,	JJ	0	*	*
-Chromosome6	145125561	C	0	*	*	0	*	*	2	..	JJ	1	T	J	4	T...	JJJF
-Chromosome6	145125587	C	0	*	*	0	*	*	2	..	JJ	2	A.	JJ	4	..A.	JJJJ
-Chromosome6	145125619	T	0	*	*	0	*	*	2	C.	JJ	2	.C	JJ	4	....	sJJJ
-Chromosome6	145125846	G	0	*	*	1	,	J	3	a,,	JJJ	2	a,	JJ	2	,a	JA
-Chromosome6	145178456	A	2	.G	JJ	1	G	F	2	..	AA	0	*	*	0	*	*
-Chromosome6	145178466	C	2	.G	JJ	1	G	7	2	.G	FF	0	*	*	0	*	*
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-Chromosome6	145178468	C	2	.T	JJ	1	T	J	2	.T	FF	0	*	*	0	*	*
-Chromosome6	145178584	C	1	t	J	1	,	F	2	,t	JF	0	*	*	0	*	*
-Chromosome6	145178592	T	1	,	J	1	c	J	2	c,	JA	0	*	*	0	*	*
-Chromosome6	145178597	T	1	,	J	1	g	J	2	g,	JJ	0	*	*	0	*	*
-Chromosome6	145178613	G	2	,a	JJ	1	,	J	2	c,	JJ	0	*	*	0	*	*
-Chromosome6	145178616	C	2	t,	JJ	1	,	J	2	tt	JJ	0	*	*	0	*	*
-Chromosome6	145178622	A	2	,g	JJ	1	g	J	2	g,	JJ	0	*	*	0	*	*
-Chromosome6	145178626	C	2	t,	JF	1	,	J	2	,t	AA	0	*	*	0	*	*
-Chromosome6	145178698	A	2	,g	JJ	1	g	J	1	,	J	0	*	*	0	*	*
-Chromosome6	145178710	T	2	,c	JJ	1	c	J	1	,	J	0	*	*	0	*	*
-Chromosome6	145202057	A	0	*	*	0	*	*	2	.G	JJ	1	G	F	4	GG..	JJJJ
-Chromosome6	145202058	A	0	*	*	1	.	F	2	.G	FJ	1	G	F	4	GG..	JJJJ
-Chromosome6	145202257	C	0	*	*	0	*	*	2	t,	JJ	1	,	J	4	,,tt	JJJJ
-Chromosome6	145238408	G	0	*	*	1	,	J	1	a	7	0	*	*	2	,a	7J
-Chromosome6	145251367	A	0	*	*	0	*	*	1	G	V	2	C$G	Js	4	.GG$G	sGJQ
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-Chromosome6	145382362	T	0	*	*	0	*	*	1	.	J	2	A.	JJ	1	A	J
-Chromosome6	145382415	T	0	*	*	0	*	*	1	.	J	2	C.	JJ	1	C	J
-Chromosome6	145391638	A	1	.	J	0	*	*	2	GG	JJ	3	G..	sJJ	0	*	*
-Chromosome6	145394073	C	0	*	*	1	,	F	0	*	*	1	t	F	2	,t	JF
-Chromosome6	145398680	G	0	*	*	1	a	J	0	*	*	1	.	s	2	,a	JA
-Chromosome6	145398691	G	0	*	*	1	a	J	0	*	*	1	.	j	2	,a	JA
-Chromosome6	145398750	C	0	*	*	1	a	J	0	*	*	1	.	e	2	,a	JF
-Chromosome6	145433332	G	0	*	*	2	a.	Jo	2	,,	JJ	2	,a	JJ	0	*	*
-Chromosome6	145434927	A	4	,,,,	JJJJ	3	C,,	sJJ	2	t,	JA	7	,tct,,,	JFJFJJ<	4	,t,t	JJFJ
-Chromosome6	145437119	T	0	*	*	1	A	J	0	*	*	3	A..	FsJ	3	..A	JJJ
-Chromosome6	145437187	G	0	*	*	1	A	k	0	*	*	3	A..	sso	3	...	sss
-Chromosome6	145437229	C	0	*	*	1	t	F	0	*	*	3	,t,	JFF	3	,,t	JJF
-Chromosome6	145494853	A	2	.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT	GF	0	*	*	2	..	JJ	0	*	*	1	.-34GCAATGACATGTAGGATCTTGATCTATTTTGCTT	<
-Chromosome6	145498907	A	1	,	F	2	,c	F<	0	*	*	1	c	<	0	*	*
-Chromosome6	145550803	T	9	,.,,,gg,g	Js77J7JJF	3	G$G,	JaJ	2	.g	ss	3	ggg	JJJ	7	Gg,g,,,	kJ7<JJJ
-Chromosome6	145883542	C	0	*	*	1	.	s	1	A	s	3	..a	soj	0	*	*
-Chromosome6	145912184	C	0	*	*	0	*	*	1	t	F	1	,	J	2	t,	JJ
-Chromosome6	145912948	C	2	A.	JJ	1	A	F	2	.A	JJ	0	*	*	1	T	J
-Chromosome6	145917101	C	3	..T	FJJ	2	.T	JJ	4	....	J7JJ	2	T.	FJ	2	T.	JJ
-Chromosome6	146016056	A	2	,g	JF	3	,,g	FJJ	0	*	*	0	*	*	1	,	7
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-Chromosome6	146084493	G	0	*	*	0	*	*	1	.	F	3	.AA	JJF	1	A	J
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-Chromosome6	146148158	T	0	*	*	1	c	J	0	*	*	1	,	<	2	,c	JJ
-Chromosome6	146185301	C	1	a	F	0	*	*	1	,	F	0	*	*	2	a,	JF
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-Chromosome6	146185311	A	1	*	F	0	*	*	1	,	A	0	*	*	2	*,	JJ
-Chromosome6	146185312	A	1	*	F	0	*	*	1	,	F	0	*	*	2	*,	JJ
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-Chromosome6	146190225	G	2	A.	A<	0	*	*	0	*	*	3	..A	AAJ	1	.	J
-Chromosome6	146190255	G	2	.-2TC.	eJ	0	*	*	0	*	*	3	..-2TC.-2TC	J=s	1	.-2TC	f
-Chromosome6	146235361	A	0	*	*	1	.	<	2	.G	JJ	5	.G...	JJJJJ	4	G...	FJFJ
-Chromosome6	146235549	T	0	*	*	2	A,	sJ	2	,,	FJ	5	,aa,a	JJJJ<	3	aaa	JJJ
-Chromosome6	146247233	G	1	.	J	0	*	*	1	A	J	0	*	*	2	.A	JJ
-Chromosome6	146425890	G	1	.-4TCGA	7	0	*	*	1	.-4TCGA	7	2	.-4TCGA.-4TCGA	JM	0	*	*
-Chromosome6	146442044	A	1	,	F	1	,-1t	<	1	,-1t	B	0	*	*	0	*	*
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-Chromosome6	146825897	G	0	*	*	0	*	*	1	.	s	2	.t	sJ	1	T	s
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-Chromosome6	146866556	T	0	*	*	0	*	*	1	,	J	1	G	s	2	G.	sJ
-Chromosome6	146944658	G	2	A.	7J	0	*	*	1	.	J	1	A	J	0	*	*
-Chromosome6	147003198	C	1	t	J	3	t,,	JJJ	3	,,t	JJJ	1	,	J	2	a,	JJ
-Chromosome6	147038868	A	0	*	*	1	g	J	1	,	J	0	*	*	2	g,	JJ
-Chromosome6	147038896	A	0	*	*	1	t	J	1	,	J	0	*	*	2	t,	JJ
-Chromosome6	147360171	T	0	*	*	1	A	J	3	A..	JJJ	0	*	*	5	.....	JJJJJ
-Chromosome6	147515182	C	1	.	J	0	*	*	0	*	*	3	..+3GAT.	sJs	1	.-3GAT	J
-Chromosome6	147515275	T	1	.	J	0	*	*	0	*	*	3	.G,	oo:	1	G	J
-Chromosome6	147666885	C	5	,a,,a	JAJJJ	2	,a	JJ	6	,,,a,a	7AJJJJ	3	,,,	JJJ	4	,,a,	FJFJ
-Chromosome6	147666914	G	4	,,,t	FJJJ	0	*	*	6	,,,t,,	JJJJFJ	3	,,,	JJJ	4	,,t,	FJJJ
-Chromosome6	147666915	A	4	,,gt	JJJJ	0	*	*	5	gg,g,	JJJJJ	3	,,,	JJJ	4	,,g,	FJJJ
-Chromosome6	147666917	C	4	,a,,	JJJJ	0	*	*	5	a,,,,	JJJJJ	3	,,,	JJJ	4	,,,a	FJJJ
-Chromosome6	147696786	A	2	.G	AF	3	GG.	7J<	1	G	F	2	.G	J<	2	G.	JA
-Chromosome6	147752900	G	2	,-11tagtccaattt,	7J	0	*	*	0	*	*	1	,	F	3	A,,	sJJ
-Chromosome6	147752922	C	2	g,	JJ	0	*	*	0	*	*	1	,	J	3	,,t	FJJ
-Chromosome6	147753829	T	1	,	F	0	*	*	2	c,	Js	1	c	J	1	g	J
-Chromosome6	147780213	G	0	*	*	2	.a	nJ	0	*	*	1	A	s	1	,	J
-Chromosome6	147780224	G	0	*	*	2	,-1a,-1a	JJ	0	*	*	1	.-1A	s	1	,	J
-Chromosome6	147888570	C	1	T	J	1	.	J	0	*	*	0	*	*	2	T.	JJ
-Chromosome6	147888576	A	1	G	J	1	.	J	0	*	*	0	*	*	2	G.	J<
-Chromosome6	147888768	G	1	a	7	1	,	J	0	*	*	0	*	*	2	a,	8F
-Chromosome6	147888873	A	1	,	F	1	g	J	0	*	*	0	*	*	2	,g	JJ
-Chromosome6	147961854	C	3	,,t	JJJ	1	,	s	0	*	*	1	g	s	0	*	*
-Chromosome6	147961881	G	3	,aa	JJJ	1	,	s	0	*	*	1	a	s	0	*	*
-Chromosome6	147997554	G	1	,	J	1	a	J	0	*	*	2	a,	JJ	0	*	*
-Chromosome6	147997619	T	1	c	<	1	,	J	0	*	*	2	c,	JJ	0	*	*
-Chromosome6	147997623	C	1	,	F	1	t	J	0	*	*	2	,t	FJ	0	*	*
-Chromosome6	148158071	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
-Chromosome6	148158101	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
-Chromosome6	148158167	C	0	*	*	1	.	k	4	..tt	ssJJ	0	*	*	2	.a	jJ
-Chromosome6	148158183	G	0	*	*	1	A	H	4	..aa	ssJJ	0	*	*	2	.,	oF
-Chromosome6	148158199	G	0	*	*	1	t	J	4	,,,,	JFJJ	0	*	*	2	c,	JA
-Chromosome6	148158200	C	0	*	*	1	,	J	4	t,,t	JJFJ	0	*	*	2	,t	AJ
-Chromosome6	148158203	A	0	*	*	1	,	J	4	g,,g	JJJJ	0	*	*	2	t,	<7
-Chromosome6	148158230	C	0	*	*	1	,	J	4	aa,a	JJJF	0	*	*	1	a	F
-Chromosome6	148158269	T	0	*	*	1	,	J	4	a,,a	JJFJ	0	*	*	1	a	F
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-Chromosome6	157277018	T	0	*	*	2	a,	JJ	0	*	*	2	,a	JJ	1	.	s
-Chromosome6	157277047	A	0	*	*	2	,-2tg,	JJ	0	*	*	2	,,-2tg	JJ	1	.	V
-Chromosome6	157277086	A	0	*	*	2	,c	JJ	0	*	*	2	g,	JF	1	,	J
-Chromosome6	157344689	A	0	*	*	1	,-1t	B	0	*	*	1	,	J	1	,-1t	B
-Chromosome6	157407785	T	1	.	J	0	*	*	0	*	*	2	G.	JJ	1	G	J
-Chromosome6	157407786	G	1	.	J	0	*	*	0	*	*	2	A.	JJ	1	A	F
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-Chromosome6	157407852	C	1	.	J	0	*	*	0	*	*	2	G.	ss	1	G	o
-Chromosome6	157407855	C	1	.	J	0	*	*	0	*	*	2	A.	so	1	A	s
-Chromosome6	157407885	A	1	.	J	0	*	*	0	*	*	2	G.	sk	1	G	o
-Chromosome6	157478293	A	0	*	*	0	*	*	1	.	J	1	G	J	2	T.	JJ
-Chromosome6	157478303	C	0	*	*	0	*	*	1	T	J	1	.	J	2	.T	JJ
-Chromosome6	157478323	G	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	JJ
-Chromosome6	157478338	G	0	*	*	0	*	*	1	C	J	1	.	J	2	.C	JJ
-Chromosome6	157478380	T	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	JJ
-Chromosome6	157478395	C	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	AJ
-Chromosome6	157478419	C	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	FJ
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-Chromosome6	157496964	C	2	..	JJ	0	*	*	1	T	F	2	.T	As	0	*	*
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-Chromosome6	157596117	C	3	.TT	JJJ	0	*	*	2	.T	JJ	2	..	JJ	0	*	*
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-Chromosome6	162632130	T	71	.............A.....................C..................................,	ssossssssssoojsesV\osssfssssssssjJs`sssssssfsss\sso\ssassossoosassksosF	167	.................................................A..................................................................A..................................................	sjssssskoo`sosssssRssjsssssssksfsssssosssssjoosesjsasossssssssjessjsoasosssssssssssoAsMsssssfsossssWssoossssssssssosssssssss\sssssssss\sjossssssosssssssos`ossossssosss	286	..............................................A................................................................................A....................................................A.......................A......C..................................................................,,,,,,,,	sosoossssaossfs9oss`fsskssssksossjsssjofk`sssssssssssssasskasssso\ssssesssss`ssooRsssVooa`HVosssVj`ssf\sjossjjosssssfoosojs\soosssfjsssssssjoosssojoCssssssssjssosssssosssskoWkoooss`aoojoos`sssfsssossossosoosssssssssossVVsfosssosssssVssosssjCssssssWss`sssossssssCssssjssooossssssJJ7JJJFJ	226	...........................................................................................................................................................................................A.....A..............................,,	sajossse\oossossssosossssssooskjosssossssWsssssssWsssoossssesssssassssjssssssssssssssVsRoossosssoososseskosssosojssssVssVossksjssssssssss`ssjssssssoosjssfsRsssssssssssossRojsjsWsjsosssosWssosjssssssssssssssessssssssssossssosJ>	249	.......................................................................................A..........................A...........................................................................................................................A........,,	osoossjjsoosssssssssssssssskMssssjsessssjsssossjossssosossssssss`sssosssssssoossesssssesssssssssssssssssssssssssssssosssooksssksssssVoMssososssossossoCassosssosssosssosossesssjossssjssosoasssooVsMksssVssooskssssjossksosssfssssssssssssessoossMjsjosJ<
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-Chromosome6	162632154	C	71	.....A................................................................,	ssqsskssssssssoeoe\5se`ssssssssssJosossssssssss\os``ss\ssjssssssosasssF	167	.......................................................................................................................................................................	bosssoessM\jsosssj\ssjs`sssssssVssjso\ssosesRssoess\ossksosssjdssssssassssjsosssjmsssoHsssssMsfssssfsssssosssssssssssossssssRssoeoesjsRs5sVsssssssssssssWsoosssssssssso	286	......................................................A.............................................................................................................................................................................................................................,,,,,,,,,,	ojsssssssosossj\kksaRskessossoosssssomojs\ssssossssosskssjeojssssossssjssossess`sIssssjssoefksssojRssVosi`ssajssss`s\ossfossssesssR`sssssssjsksosjMoHssssosVsoossssodsokjsjomn`sseososR`josessssssjsssjso\soossssssmsss`sa`sVesss`o``esasejsssosssssssjeRsosssaeVsssssossssossVsssssJA7JJJJ7JA	226	A.....................................................................................................................................................................T........................................................,,,	WsosssjsoRosjsssssjssssssjooosooosoosjssIsssssosWsssssosss`sksssAssssssssjsssssssosssIj`osssjsoe\jsossas``joossjaosoe\ksj`ssfsosMssssssoResasssssjosssesoesRsssossssosksVsjo9ssssjsjssssoRsssjoosssssssRssossssssssjsssssssssssJJA	249	............................................................A...G.....................................................................................................................................................................................,,,	hossso`sooosssssssssssssosssjosssssosssssssssssojs^osoossosjksosksssossoosssjkssMoosss9`sssssss`ssoossssssssssssssooossjsaksssejsjssVjRssosssssjosesss`sos`jssoessssjsojsssjsjsssssssjsseso\osssoesCosssossoosossossoRoDooseoRseossjoossssossjossossssJAA
-Chromosome6	162632155	C	71	......................................................................,	sspsskssssssssssseCasoRossssssssoFssssssosssssskssoRssossjssosoossjsssJ	167	.$........................................................................................................................T..T.............T.................T..........	ajsssojosf?`sssssk\ssasojsssssojsssssVssosesNsseoss\`ssjsssoskdssssssjjkssssssesjmssssWossssMssssssessssssssssssjsosssosssssRsssjsjsssooVsCssssssssVssssWoeosssssssssos	286	.....................................T......................................................................................................T......................................................................A..............................................G..................,,,,,,,,,	sosssssssesssssejksV`skossosossssVsssmsosRsssskssssVsskosNks`sssssssssRssoosjssejRsssoossesksssssffjoV`skssmossssjsMossessWssosss`jsssssssfsfsosHRs\sossssoso`ssssodsekjssom`ossReofsooksosoassjsssssssssoskessssssdsssjsj`soosjsosejosassjsssjMssssssosjHjs`ossoVssIssosojssfsjsssssJJAJAJJ<J	225	............................................................A............................................................................T.....................................................................................,,	hoksssfseesssssssosoosssjosfossesssssossRssoosse\sssssosssas]sssjssssssssosssjsssssssRojssssssseajsjssfsajsossss\sssoVkskVsoRsssRsssssooe`sjjsssskssssssoooksoesjo`ssskojsfffsossosossssoasssoeosss`sssjosVsessssssossssssssossJF	249	.............................................................................T.........................................................................................................................................................................,,	`oosooV`ssssssossssssossjssoosssosssssssssssssssjs]sssjssosjkoosgsssosssssssskseRsssssCossssssoossssssssosssssssssseessssoksosoessssVoassssssssossosoofjsoosojsosjssjosssssososossssskss`soRosssj>jCssssossojsessosjsosaessosRssoesVsjosfssssjsssRssjssJA
-Chromosome6	162632162	G	71	.$.$.$.$.$.$.$.$..,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	EEnj\nnnssJFJJJJAJJJJJJJJJJJJJJJJJ77JJJJJJJJJJJJJJJJJ<JJJ<JJJFJJFJ<JJFJ	165	.$.$.$.$.$.$..$.$.$.$.$.$.$.$.$.$.$.$.$.....................,...,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	Ennnn=onnnnnjQnefMnnsssoosVssooMossossssoJsosJJJJFJFJFFJJJJJJJJ<JJAJJ<JJJ<7JJJJJFAAJJJJJJJJJJFFJJJJJJFJJFJJJJJJFJJJJJJJJFJJJJAJFJJJFFJ7JJFFAFAFFJFJJJJJJJJJJFJJJJFJF<	279	.$.$.$.$.$.$.$.$.$.$.$.$.$.$..$.$.$.$.$.$.$.$.$.$.$.$............,,..,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	eEnnjnnnnnnVnn\nnVnn\nennjjeskss``oessjJJssJJJJ<JJJJ<JJJJJJFJFJJJJJJJJJFJJJJJFJJJJJJJAJJJJJJJJJJJJJFJJJFJ7JJJJJJFJJJJJ<JJJJJJJJFJ<JAFJ<<FJJFAFJJ<<<JFJJJJJFJJJJJJ<JJJJFJFJJFJJFJJJJJFJJAJFJJJJAAJAFJJJJFJJJJJJJJJJJJJJAFAAAJJJJJFJJ<FJFJJJJJJJJJJJJJJJJJFJJJJJFJJJ7JJFJJFFJJJJJ<JFAJJJ7	221	.$..$..$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$............,......,.,..,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	Es<snnjnnnHnnn`njnnnn[nnnnnsseosssssossJssjsssJeJjsJJAJJ<JJJAJJAJFJJJJJJJJJJFJJJJJJFJJJJJJJFJJJJJFJJJJJJJJFJJAJJJJJJFFJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJFAJJAJJFJ<JJJJJFJJJJJJAJJFJFJJJJJJFJJJJJJJAJJJJJFJJJJJJJFJJJJFJFAFJJJJJ	246	.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$.$........,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,c,,,,,	EEnnnnjjWnn[nennensoW`sofjJFJJJJFJJJFJJJFJJJJJJJ<JFJJJJJFJJJJFJJJJJJFFFJJFJFFFJAJJJJJJFJJJJJJJJJJJJJJAJJJJJJJJJJJJFJAJJJJJFJJJJ7JJJJJJJJJJJJJJJFJJJJJAAJJ<JJJJJJJJJJJJJJJJJJJJAJJFJJJFJJFJJJJJJJJJJJJJJJJFJJJJJJFJAFFFJJFFJJJJJFJAJJJJJFFFJFJJJJFJJJJJ
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-Chromosome6	195513062	G	0	*	*	1	A	A	1	.	J	2	A.	JJ	0	*	*
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-Chromosome6	195763168	C	2	.T	JJ	0	*	*	1	T	J	0	*	*	1	.	A
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-Chromosome6	216584528	A	3	..C	AJJ	2	CC	FF	6	C.C.C.	JJJJJJ	6	...C.C	JJJFJJ	6	..CC..	<JJJJJ
-Chromosome6	216584530	C	3	..T	7JJ	2	TT	JF	6	T.TTT.	JJJJJJ	6	...T..	JAJJJJ	6	..TT..	FJJJJF
-Chromosome6	216584660	T	1	,	J	0	*	*	4	.$G,,	AsFJ	3	,G,	JsJ	0	*	*
-Chromosome6	216584774	T	3	,g,	JJA	2	gg	JA	5	,,,gg	JJJJJ	5	,,g,,	JJJJJ	6	,,gg,,	JJJJJJ
-Chromosome6	216584811	G	3	,aa	AFF	2	ta	FA	4	a,aa	FFFF	4	,a,a	FFFF	6	,,aa,,	F<FFFF
-Chromosome6	216777691	T	3	...	JJJ	0	*	*	4	.C..	JJJJ	1	C	J	0	*	*
-Chromosome6	216777833	G	3	,aa	<JJ	0	*	*	4	,,,a	JJJF	1	a	J	0	*	*
-Chromosome6	216797333	T	1	.	e	0	*	*	0	*	*	1	G	J	2	.G	FJ
-Chromosome6	216808460	C	4	,,..	skos	6	.,,,t,	ssssss	22	.,,,t,,,,,,,,,,,,,,...	sssssoossssosssoossssj	17	.,,,,,,,,,,,t,..,	Vssssssssssosssso	22	,,,,,,,,,,t,,,,,,,,,,.	ssosos`ksssssessssoesV
-Chromosome6	216937547	T	0	*	*	1	,-1g	A	0	*	*	1	.-1G	e	2	.-1G,-1g	BC
-Chromosome6	216952940	A	0	*	*	1	T	J	1	.	J	2	T.	JJ	0	*	*
-Chromosome6	217083659	T	0	*	*	1	.	J	2	C.	J<	0	*	*	1	C	J
-Chromosome6	217083825	T	0	*	*	1	,	J	2	g,	JF	0	*	*	1	g	J
-Chromosome6	217157631	A	2	T.	J<	0	*	*	1	.	o	2	t.	sJ	0	*	*
-Chromosome6	217171984	G	2	A,	<J	2	AA	<J	0	*	*	0	*	*	1	,	J
-Chromosome6	217172045	C	2	,t	JJ	0	*	*	0	*	*	1	,	s	1	t	J
-Chromosome6	217264846	C	4	,,,t	FJJJ	4	,,,t	JAF7	2	,,	JJ	5	.tt,t	sJJJJ	7	.,,t,t,	rJJJJFJ
-Chromosome6	217264888	G	4	aaaa	JJJJ	4	aaa,	JJJJ	2	,,	JJ	5	,,a,,	JJJJJ	7	a,a,,a,	JJJJJAJ
-Chromosome6	217266587	T	9	...C.....	JFJJ7JJ<J	4	..C.	JFFJ	4	....	JJJJ	0	*	*	10	.......C..	JJJFFJJFJ<
-Chromosome6	217316014	T	1	A	J	0	*	*	2	A.	J<	1	.	s	0	*	*
-Chromosome6	217316307	G	1	a	J	0	*	*	2	a,	JF	0	*	*	1	,	J
-Chromosome6	217322492	A	1	g	J	4	ggg,	JJJ7	4	,,gg	FJJJ	4	g,,,	JJJJ	5	,,,,,	<AJJJ
-Chromosome6	217363166	A	3	.+2CT.+2CT.+2CT	JJJ	0	*	*	0	*	*	1	G	J	1	.	J
-Chromosome6	217421825	G	0	*	*	3	...	J<J	0	*	*	7	.A.....	JJJAJJJ	5	....A	FJJFJ
-Chromosome6	217421895	C	0	*	*	3	T..	J7A	0	*	*	6	..T..T	JaJFAJ	4	T...	JFsJ
-Chromosome6	217516874	T	0	*	*	1	C	o	1	.	o	0	*	*	3	..C	sss
-Chromosome6	217516934	A	0	*	*	1	c	J	1	,	J	0	*	*	3	,,c	JJJ
-Chromosome6	217588082	C	2	A.	JF	1	.	J	0	*	*	0	*	*	2	A.	JJ
-Chromosome6	217588125	A	2	G.	Js	1	.	J	0	*	*	0	*	*	2	.G	JJ
-Chromosome6	217620479	A	0	*	*	2	G.	JJ	3	.G.	JFJ	2	G.	J7	2	G.	JJ
-Chromosome6	217654770	T	0	*	*	1	.	J	2	.C	JJ	0	*	*	1	C	J
-Chromosome6	217654772	G	0	*	*	1	.	F	2	.A	JJ	0	*	*	1	A	J
-Chromosome6	217654808	G	0	*	*	1	.	J	2	.C	Js	0	*	*	1	C	J
-Chromosome6	217654823	G	0	*	*	1	.	F	2	.T	Js	0	*	*	1	T	J
-Chromosome6	217654980	C	0	*	*	2	T,	sJ	1	,	J	0	*	*	1	t	J
-Chromosome6	217655016	T	0	*	*	2	a,	JJ	1	,	J	0	*	*	1	a	J
-Chromosome6	217655046	A	0	*	*	2	c,	JJ	1	,	J	0	*	*	1	c	J
-Chromosome6	217669291	C	0	*	*	1	.	o	2	T.	ss	0	*	*	2	TT	os
-Chromosome6	217669739	C	2	A.	ea	1	A	o	0	*	*	2	A.	js	6	AA.A..	saojss
-Chromosome6	217682608	T	3	..*	JJ5	1	.	J	0	*	*	0	*	*	2	G.	JF
-Chromosome6	217682962	T	3	,,a	J7J	1	,	J	0	*	*	0	*	*	2	,a	JJ
-Chromosome6	217819686	C	2	..	AJ	0	*	*	3	.A.	JFJ	0	*	*	3	..+1A.	FJJ
-Chromosome6	217819978	T	2	,,	FJ	0	*	*	3	,,g	JJ7	0	*	*	3	,c,	AFJ
-Chromosome6	217825299	A	4	....	JJJJ	2	G.	JJ	1	C	J	0	*	*	2	GG	JJ
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-Chromosome6	217983716	T	0	*	*	2	,.-1A	Js	0	*	*	1	,	s	1	,-1a	F
-Chromosome6	218225070	A	12	....GG....G,	ooJJJJJJFFJJ	7	..,G..G	FJJJAJJ	10	....GG...,	JJJJJJJJJJ	15	.GGGGGG.......,	sJJJJJJJ7F7JJFJ	6	..G...	FJJAJJ
-Chromosome6	218246251	T	2	..	JJ	0	*	*	4	...C	\JJJ	0	*	*	3	..C	JJJ
-Chromosome6	218338262	G	1	.-1T	s	0	*	*	1	.	e	1	.-1T	s	0	*	*
-Chromosome6	218382408	A	1	T	J	2	..	JJ	2	.T	JF	0	*	*	0	*	*
-Chromosome6	218382409	A	1	.	J	2	.G	JJ	2	.G	AJ	0	*	*	0	*	*
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-Chromosome6	218382423	A	1	T	J	2	.G	JJ	2	.G	FF	0	*	*	0	*	*
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-Chromosome6	218382447	C	1	G	J	2	.A	FJ	1	.	J	0	*	*	0	*	*
-Chromosome6	218382451	C	1	G	J	2	.A	JJ	1	A	J	0	*	*	0	*	*
-Chromosome6	218382485	C	1	T	J	2	T.	JJ	1	.	J	0	*	*	0	*	*
-Chromosome6	218382487	A	1	T	J	2	.G	JJ	1	.	J	0	*	*	0	*	*
-Chromosome6	218382589	A	1	g	J	2	,g	JJ	2	,g	JA	1	.	s	0	*	*
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-Chromosome6	218511955	G	0	*	*	0	*	*	2	,a	oJ	2	,,	JJ	1	a	J
-Chromosome6	218598295	A	0	*	*	2	G.	Jo	0	*	*	1	.	s	2	G.	Js
-Chromosome6	218712715	C	1	t	J	0	*	*	2	t,	JJ	1	.	o	0	*	*
-Chromosome6	218712720	C	1	t	J	0	*	*	2	t,	7J	1	.	s	0	*	*
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-Chromosome6	219254463	T	0	*	*	2	..	JJ	3	C..	JJJ	3	C.C	JsF	2	.C	JJ
-Chromosome6	219254636	G	0	*	*	2	,,	JJ	4	,.,c	JsAJ	2	,c	JJ	2	c,	JJ
-Chromosome6	219254639	A	0	*	*	2	,,	JJ	4	,.,t	JsJA	2	,t	JJ	2	t,	JJ
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-Chromosome6	219361060	T	0	*	*	2	.A	JJ	1	A	J	0	*	*	1	^],	<
-Chromosome6	219361142	A	0	*	*	2	..-4AGCT	sU	1	.-4AGCT	U	0	*	*	1	,-4agct	;
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-Chromosome6	219469888	A	1	G	s	1	,	A	0	*	*	3	..g	ssJ	0	*	*
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-Chromosome6	219683096	T	2	C.	`s	1	C	\	0	*	*	0	*	*	2	..	ss
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-Chromosome6	220083143	T	0	*	*	0	*	*	3	.A.	JJJ	1	.	J	4	.G..	JJFF
-Chromosome6	220185012	C	0	*	*	1	.	s	0	*	*	1	T	s	2	.T	so
-Chromosome6	220185090	G	0	*	*	1	t	J	0	*	*	1	,	J	2	t,	JJ
-Chromosome6	220239808	C	0	*	*	1	.	F	2	.T	JJ	2	.T	JJ	0	*	*
-Chromosome6	220409434	G	4	....	JJJJ	1	A	J	3	..A	JJJ	0	*	*	0	*	*
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-Chromosome6	220529566	C	1	.	A	1	A	J	2	T.	JJ	0	*	*	0	*	*
-Chromosome6	220532478	T	2	..	JA	0	*	*	1	G	F	0	*	*	2	.G	JF
-Chromosome6	220532665	G	2	,,	JJ	0	*	*	1	a	J	0	*	*	2	,a	JF
-Chromosome6	220532678	T	2	,,	AA	0	*	*	1	c	J	0	*	*	2	,c	JJ
-Chromosome6	220633314	A	2	.G	JJ	1	G	J	1	.	n	0	*	*	0	*	*
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-Chromosome6	221052338	A	0	*	*	2	,,	JJ	1	t	J	0	*	*	4	,,t,	FJJJ
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-Chromosome6	221118008	C	1	,-1a	J	1	.	s	1	.-1A	s	0	*	*	1	,-1a	J
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-Chromosome6	221388300	A	0	*	*	2	,c	JJ	0	*	*	1	C	s	1	,	J
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-Chromosome6	221461565	T	0	*	*	2	.C	sV	1	,	J	0	*	*	1	C	s
-Chromosome6	221461566	T	0	*	*	2	.C	sC	1	,	J	0	*	*	1	C	s
-Chromosome6	221461602	T	0	*	*	2	.C	jR	1	,	J	0	*	*	1	C	n
-Chromosome6	221461608	C	0	*	*	2	.T	eM	1	,	J	0	*	*	1	T$	J
-Chromosome6	221461617	C	0	*	*	2	.t	oJ	1	,	J	0	*	*	1	t	J
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-Chromosome6	221527623	C	0	*	*	0	*	*	1	.	s	4	.AA.	ssss	1	A	s
-Chromosome6	221555532	C	1	.	J	0	*	*	0	*	*	2	.T	JF	1	T	F
-Chromosome6	221578771	G	1	,	J	1	.-4TAAT	o	0	*	*	1	.-4TAAT	q	0	*	*
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-Chromosome6	221579643	T	1	.-3CAG	F	0	*	*	1	C	7	1	.	J	0	*	*
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-Chromosome6	221736314	T	0	*	*	1	C	J	2	C.	JJ	0	*	*	2	.C	JJ
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-Chromosome6	221932971	C	0	*	*	1	,-4aagt	J	1	,-4aagt	J	0	*	*	1	.	s
-Chromosome6	221984106	G	0	*	*	2	.-5TTCCT.	oF	2	..-5TTCCT	oF	1	.	s	0	*	*
-Chromosome6	221988300	C	2	g,	JF	0	*	*	1	,	J	1	G	s	0	*	*
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-Chromosome6	221994387	C	0	*	*	1	,-1t	A	3	.-1T..	sso	1	.	s	1	.-1T	s
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-Chromosome6	222047653	T	1	C	J	0	*	*	0	*	*	3	...	JJF	3	..C	JJJ
-Chromosome6	222049057	T	8	..CC..CC	<<J<FFFJ	2	CC	JA	7	..CC..C	F7JJFFJ	6	CC.C.C	JJAJ7F	8	.CCCCCCC	FJJ7FJJJ
-Chromosome6	222201502	A	0	*	*	1	g	J	0	*	*	1	,	J	4	g,,,	JJJJ
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-Chromosome6	222399401	C	0	*	*	1	.-2TT	J	1	,-1t	J	2	.-2TT.-2TT	JJ	0	*	*
-Chromosome6	222437947	G	2	..	JF	0	*	*	3	..T	JFJ	0	*	*	1	A	J
-Chromosome6	222438082	G	2	*t	GJ	0	*	*	3	,,t	JJJ	0	*	*	1	t	J
-Chromosome6	222574262	C	2	,G	JJ	3	,GA	JFJ	2	.$G	;s	6	,A,..G	JsJJJs	0	*	*
-Chromosome6	222581483	A	1	.-8ATGCTATT	;	1	.-8ATGCTATT	;	0	*	*	1	.-8ATGCTATT	;	0	*	*
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-Chromosome6	222585537	G	0	*	*	0	*	*	1	A	k	2	,A	MR	1	.	s
-Chromosome6	222623712	G	2	C.	JJ	0	*	*	1	C	J	0	*	*	1	.	n
-Chromosome6	222637079	C	0	*	*	2	..	ss	0	*	*	1	T	s	2	.a	sJ
-Chromosome6	222706491	G	1	C	J	0	*	*	2	.C	JF	0	*	*	1	.	J
-Chromosome6	222895452	A	0	*	*	1	*	7	0	*	*	1	,	J	2	,,-4gtgc	JJ
-Chromosome6	222936358	T	0	*	*	2	C.	JF	1	.	J	2	.C	JJ	0	*	*
-Chromosome6	222943016	A	1	,-4gcgc	F	0	*	*	1	,-4gcgc	J	1	,-4gcgc	J	0	*	*
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-Chromosome6	222975791	C	0	*	*	1	,+1g	A	0	*	*	2	,+1g,+1g	?F	2	,+1g,+1g	AA
-Chromosome6	222975798	C	0	*	*	1	,	F	0	*	*	2	,-1g,	JJ	2	,-1g,	J7
-Chromosome6	222980805	T	1	,-3tac	;	0	*	*	1	,-3tac	8	3	,-3tac,-3tac,-3tac	;;;	0	*	*
-Chromosome6	222980842	G	1	,	J	0	*	*	1	c	F	3	cc,	JJJ	0	*	*
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-Chromosome6	223012336	T	0	*	*	1	,	7	1	c	J	2	.c	\>	0	*	*
-Chromosome6	223148055	A	0	*	*	1	.-1G	n	1	.-1G	q	2	.-1G.-1G	qd	0	*	*
-Chromosome6	223168931	C	2	t,	JA	0	*	*	1	,	J	0	*	*	2	t,	JJ
-Chromosome6	223172829	A	0	*	*	2	..	JJ	1	G	J	0	*	*	5	.G.GG	JFFJA
-Chromosome6	223172835	A	0	*	*	2	..	JJ	1	G	J	0	*	*	5	.G.GG	JJJJA
-Chromosome6	223173104	C	0	*	*	1	g	F	1	,	J	0	*	*	3	,g^],	JF6
-Chromosome6	223173112	G	0	*	*	1	,	J	1	a	J	0	*	*	4	aa,a	7JFJ
-Chromosome6	223173229	A	0	*	*	1	,	J	1	,-2gc	J	0	*	*	5	,-2gc,-2gc,,,	JFFJJ
-Chromosome6	223173240	G	0	*	*	1	,	J	1	a	J	0	*	*	4	aa,,	JJJF
-Chromosome6	223195519	T	0	*	*	2	..	JJ	2	G.	JJ	2	G.	JJ	1	G	F
-Chromosome6	223195600	A	0	*	*	2	..	os	2	.g	sJ	2	.g	oJ	1	g	J
-Chromosome6	223195646	G	0	*	*	2	..	os	2	.a	sJ	2	.a	sJ	1	a	J
-Chromosome6	223195667	G	0	*	*	2	,,	JJ	2	,t	JJ	2	,t	AJ	1	t	F
-Chromosome6	223239159	C	1	.	J	4	TTTT	FJAF	5	TT..T	JJJJF	0	*	*	4	T..T	J<JJ
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-Chromosome6	238026808	A	0	*	*	3	GG.	sss	0	*	*	1	.	J	1	G	o
-Chromosome6	238189368	T	0	*	*	1	G	s	2	.A	sj	1	.	o	1	A	s
-Chromosome6	238284997	T	2	.-1G.-1G	mm	0	*	*	2	.-1G.-1G	mm	1	,	s	0	*	*
-Chromosome6	238345499	T	1	.	s	1	c	J	0	*	*	3	.-15TCTGGTACATATGGC..	Geo	0	*	*
-Chromosome6	238922545	G	2	..	FF	0	*	*	2	A.	AJ	0	*	*	1	A	7
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-Chromosome6	239064868	T	2	C.	JJ	0	*	*	0	*	*	1	C	J	1	.	J
-Chromosome6	239149736	G	1	.	J	1	A	J	2	.A	JF	0	*	*	0	*	*
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-Chromosome6	239832783	C	1	,-2tt	J	0	*	*	1	,-2tt	J	0	*	*	1	,-2tt	J
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-Chromosome6	253764367	G	2	C.	JJ	0	*	*	0	*	*	2	.C	JJ	2	C.	JJ
-Chromosome6	253764409	G	2	.-2TT.	<J	0	*	*	0	*	*	2	..-2TT	J<	2	..	JJ
-Chromosome6	253764461	G	2	A.	JJ	0	*	*	0	*	*	2	.A	JJ	2	AA	sJ
-Chromosome6	253764474	C	2	A.	JJ	0	*	*	0	*	*	2	.A	FJ	2	A.	eJ
-Chromosome6	253764498	T	2	A.	5J	0	*	*	0	*	*	2	.A	A5	1	A	S
-Chromosome6	253766758	C	1	T	J	0	*	*	2	,T	fJ	0	*	*	1	.	o
-Chromosome6	253766780	T	1	A	J	0	*	*	2	,A	oJ	0	*	*	1	.	o
-Chromosome6	253766826	A	1	.-1T	6	0	*	*	2	,.-1T	s;	0	*	*	1	.	s
-Chromosome6	253766834	A	1	C	J	0	*	*	2	,C	jF	0	*	*	1	T	s
-Chromosome6	253766854	T	1	.-1C	D	0	*	*	2	,.-1C	k?	0	*	*	1	.	s
-Chromosome6	253766855	C	1	*	A	0	*	*	2	,*	j;	0	*	*	1	.	s
-Chromosome6	253783607	A	2	G.	JA	0	*	*	1	.	J	1	G	J	0	*	*
-Chromosome6	253783685	T	2	C.	JF	0	*	*	1	.	J	1	C	J	0	*	*
-Chromosome6	253783733	G	2	A.	JJ	0	*	*	1	.	J	1	A	J	0	*	*
-Chromosome6	253783820	C	2	g,	JJ	0	*	*	1	,	J	1	g	J	0	*	*
-Chromosome6	253783902	C	2	g,	JJ	0	*	*	1	,	J	1	g	J	0	*	*
-Chromosome6	253821284	A	1	.	J	2	.+1C,+1c	JJ	0	*	*	0	*	*	2	.+1C,+1c	JJ
-Chromosome6	253821307	T	1	.	s	2	.-1A,-1a	JJ	0	*	*	0	*	*	2	.-1A,-1a	JJ
-Chromosome6	253971374	A	1	G	7	0	*	*	2	C.	JJ	0	*	*	2	CC	JJ
-Chromosome6	253971685	T	1	,	J	0	*	*	2	,a	JJ	0	*	*	2	aa	JJ
-Chromosome6	254586774	C	1	T	J	1	.	J	3	.T.	JJJ	0	*	*	0	*	*
-Chromosome6	254687265	C	0	*	*	1	*	E	1	,-1t	C	1	,-1t	J	0	*	*
-Chromosome6	254719875	A	4	.GG.	JJJJ	0	*	*	2	..	JJ	0	*	*	1	G	F
-Chromosome6	254800524	G	3	..A	AJJ	1	.	F	0	*	*	0	*	*	2	.A	FJ
-Chromosome6	254819568	A	2	G.	JF	1	.	J	0	*	*	0	*	*	1	G	J
-Chromosome6	254819572	T	2	A.	JF	1	.	J	0	*	*	0	*	*	1	A	J
-Chromosome6	254819612	G	2	C.	JF	1	.	J	0	*	*	0	*	*	1	C	J
-Chromosome6	254819615	T	2	C.	FF	1	.	F	0	*	*	0	*	*	1	C	J
-Chromosome6	254819752	C	2	a,	JA	1	,	7	0	*	*	0	*	*	1	a	J
-Chromosome6	254819784	T	2	a,	JJ	1	,	J	0	*	*	0	*	*	1	a	J
-Chromosome6	255052745	C	1	A	W	2	,a	JJ	0	*	*	1	,	J	0	*	*
-Chromosome6	255052753	T	1	.	R	2	c,	JJ	0	*	*	1	c	J	0	*	*
-Chromosome6	255459484	A	0	*	*	1	,-2at	5	1	,	J	0	*	*	2	,-2at,	5J
-Chromosome6	255606254	A	6	GG....	JJJJJJ	1	G	J	3	G..	JJJ	0	*	*	0	*	*
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-Chromosome6	255606445	T	6	,,,,cc	JJFJFF	0	*	*	3	,,c	JFJ	2	.c	sJ	0	*	*
-Chromosome6	255606507	C	5	,t,tt	JJJAJ	0	*	*	3	ttt	JJJ	1	,	J	0	*	*
-Chromosome6	255606526	A	5	,t,,,	JJJJJ	0	*	*	3	t,,	JJJ	1	,	J	0	*	*
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-Chromosome6	255718273	T	0	*	*	1	,-1a	J	1	,-1a	J	1	,-1a	F	0	*	*
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-Chromosome6	255776538	G	1	.	A	2	.T	FJ	2	.A	JJ	0	*	*	0	*	*
-Chromosome6	255880795	G	3	aa,	JJJ	3	,aa	JJJ	4	,,a,	JJJs	1	,	J	7	a,,,,,a	JJJJJJJ
-Chromosome6	255886844	C	12	.+1A.+1A....+5AAAAA......	JJJJJJJaJJJJ	13	,+2aa.+3AAA...........	ssJJFJJJAJsJA	2	..	JJ	16	......+1A....+1A......	JJJA\JkAJJFJJ<JJ	9	...+1A..+1A....	JJJJJJJJJ
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-Chromosome6	255963591	G	1	A	a	0	*	*	2	a,	Fj	0	*	*	1	.	s
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-Chromosome6	256258648	C	1	T	a	0	*	*	3	.TT	sos	1	.	s	0	*	*
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-Chromosome6	256354556	A	2	G.	JF	1	G	J	0	*	*	0	*	*	1	.	J
-Chromosome6	256354657	C	2	T.	A<	1	T	J	0	*	*	0	*	*	1	.	A
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-Chromosome6	256655423	G	2	..	J<	0	*	*	3	A.A	JJJ	1	A	J	2	.A	JJ
-Chromosome6	256782909	C	2	T.	JJ	0	*	*	1	.	F	0	*	*	1	T	J
-Chromosome6	256860288	A	0	*	*	0	*	*	2	G.	JJ	1	.	o	1	G	s
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-Chromosome6	256860307	G	0	*	*	0	*	*	3	A.A	sJJ	1	.	s	1	A	s
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-Chromosome6	257154781	T	0	*	*	1	G	s	2	G.	FJ	0	*	*	2	.G	JJ
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-Chromosome6	257160026	A	0	*	*	1	g	F	2	,,	F<	0	*	*	2	,g	JJ
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-Chromosome6	257365305	C	1	.	J	1	.-5GGCAG	8	1	.-5GGCAG	8	0	*	*	0	*	*
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-Chromosome6	259874400	G	3	,,t	J<J	3	t,t	JJJ	0	*	*	0	*	*	1	t	F
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-Chromosome6	259874465	C	1	,	J	2	t,	JJ	0	*	*	0	*	*	1	t	J
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-Chromosome6	259945639	C	0	*	*	2	..	AJ	3	.TT	JJJ	4	tTT.	oJFs	5	..TT.	JJJJJ
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-Chromosome6	259956381	C	0	*	*	1	.	s	0	*	*	1	A	s	3	..+6ATATAT.+6ATATAT	oss
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-Chromosome6	260157882	C	1	,-3tat	F	0	*	*	1	,-3tat	J	0	*	*	1	,-3tat	J
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-Chromosome6	260450936	C	1	.-1T	J	0	*	*	1	.-1T	J	0	*	*	1	.-1T	J
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-Chromosome6	260605317	T	0	*	*	1	,-3ctc	:	1	,	J	1	,-3ctc	:	0	*	*
-Chromosome6	260614871	C	1	,-1a	<	0	*	*	1	,-1a	7	0	*	*	2	,-1a,-1a	JF
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-Chromosome6	261025523	A	2	,$c	>J	0	*	*	1	,$	>	0	*	*	1	c	J
-Chromosome6	261036105	A	5	,g,,g	JJJJ<	1	g	A	0	*	*	2	g,	FJ	2	,g	JJ
-Chromosome6	261045158	G	0	*	*	1	,+1c	:	2	,+2aa,+2aa	JF	0	*	*	3	,+1a,,	JJF
-Chromosome6	261056210	T	1	.	V	0	*	*	2	CC	<J	5	C.CC.	JJJJF	0	*	*
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-Chromosome6	261120331	A	0	*	*	0	*	*	2	G.	FJ	1	.	J	1	G	A
-Chromosome6	261217534	A	0	*	*	2	.-1T.-1T	AJ	1	.-1T	F	1	.-1T	o	1	.-1T	J
-Chromosome6	261237594	C	2	a,	JJ	1	.	o	1	a	J	0	*	*	0	*	*
-Chromosome6	261237671	C	2	t,	JJ	1	,	J	1	t	J	0	*	*	0	*	*
-Chromosome6	261272801	T	0	*	*	1	.-2CG	J	1	.	J	1	.-2CG	J	1	.-2CG	J
-Chromosome6	261632189	C	0	*	*	2	,,	JJ	2	,t	JJ	0	*	*	2	A$,	JJ
-Chromosome6	261684946	C	0	*	*	1	.	J	2	.T	JJ	1	A	F	0	*	*
-Chromosome6	261684992	A	0	*	*	1	.	J	2	.C	Fo	1	G	a	0	*	*
-Chromosome6	261685032	G	0	*	*	1	.	f	2	.A	JV	1	A$	N	0	*	*
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-Chromosome6	262041522	C	0	*	*	2	,,	JJ	1	,-1t	J	0	*	*	1	,-1t	J
-Chromosome6	262048266	T	1	c	J	1	.	s	2	.c	sF	0	*	*	0	*	*
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-Chromosome6	262108057	G	0	*	*	0	*	*	3	..A	sse	2	.T	sJ	1	.	s
-Chromosome6	262108088	G	0	*	*	0	*	*	3	C,,	rJJ	1	C	s	1	.	s
-Chromosome6	262108128	T	0	*	*	0	*	*	3	cc,	JJJ	1	,	J	1	c	J
-Chromosome6	262216726	G	1	.	k	1	,-8ctggagac	8	1	,-8ctggagac	8	0	*	*	0	*	*
-Chromosome6	262420149	C	1	.	J	6	AAAA..	JJJJJA	2	A^].	NA	11	A..AA..AAA.	JJFJJJJJJJA	0	*	*
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-Chromosome6	262446243	C	0	*	*	1	,-1t	J	0	*	*	1	.-1T	s	1	,-1t	J
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-Chromosome6	263305606	A	0	*	*	0	*	*	2	G.+1G	AJ	2	..	JJ	2	G.	JJ
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-Chromosome6	263329137	G	8	AA......	JJJJJFAJ	2	A.	JF	4	.A..	<J<F	2	..	JJ	9	....AA.A.	JF7JJFJJJ
-Chromosome6	263456066	A	0	*	*	1	,-1t	J	1	,-1t	<	0	*	*	1	,-1t	J
-Chromosome6	263677587	C	1	G	J	5	GGAGG	7JJJJ	0	*	*	2	AG	JJ	0	*	*
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-Chromosome6	264058093	A	3	,tt	FJ<	4	t,tt	JJJF	0	*	*	3	,tt	JJJ	3	ttt	JJJ
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-Chromosome6	264266792	T	1	a	J	2	,,	JJ	0	*	*	2	,c	AJ	5	,,,,c	JFJJJ
-Chromosome6	264523658	T	2	G.	oJ	2	.G	JJ	0	*	*	0	*	*	1	.	J
-Chromosome6	264730923	T	2	.-1A.	JJ	0	*	*	1	.-1A	J	2	..	JJ	0	*	*
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-Chromosome6	264731175	G	1	a	J	0	*	*	1	t	J	2	,t	JJ	0	*	*
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-Chromosome6	264731188	C	2	,,	JJ	0	*	*	1	t	J	2	gt	JJ	0	*	*
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-Chromosome6	264833852	A	0	*	*	1	,	J	1	,-6tccagg	5	0	*	*	1	,-6tccagg	5
-Chromosome6	264833903	C	0	*	*	1	,	J	1	,-1a	J	0	*	*	1	,-1a	J
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-Chromosome6	265097279	A	0	*	*	1	.	J	1	G	J	0	*	*	3	G..	JFJ
-Chromosome6	265097368	G	0	*	*	1	.	J	1	A	7	0	*	*	3	A..	J=5
-Chromosome6	265257185	G	3	t,,	JJJ	1	,	7	2	tt	JJ	0	*	*	0	*	*
-Chromosome6	265257215	A	3	c,,	JJJ	1	,	F	2	cc	JJ	0	*	*	0	*	*
-Chromosome6	265257223	C	3	t,,	JJJ	1	,	A	2	tt	JJ	0	*	*	0	*	*
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-Chromosome6	265482676	A	0	*	*	1	t	J	1	,	J	1	.-1T	s	0	*	*
-Chromosome6	265705349	G	1	,	J	1	C	o	2	.-4TCGA.-4TCGA	KK	0	*	*	0	*	*
-Chromosome6	265814614	T	1	c	<	2	,c	JJ	0	*	*	0	*	*	1	,	F
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-Chromosome6	265939862	C	0	*	*	1	.-4CATG	>	1	.-4CATG	J	0	*	*	2	.-4CATG.-4CATG	JJ
-Chromosome6	265939888	C	0	*	*	1	.+1T	J	2	.+1T.	JJ	0	*	*	2	.+1T.+1T	JF
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-Chromosome6	265940010	A	0	*	*	1	,	J	2	.g	sJ	0	*	*	2	gg	JJ
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-Chromosome6	266080977	C	1	.-2TT	J	0	*	*	1	.-2TT	s	0	*	*	1	.-3TTT	J
-Chromosome6	266090619	C	1	.	J	0	*	*	2	A.	FJ	1	A	J	0	*	*
-Chromosome6	266266845	C	2	GG	FF	0	*	*	3	G.G	FJJ	1	.	J	2	.G	FJ
-Chromosome6	266266853	C	2	GG	<J	0	*	*	3	G.G	JJF	1	.	J	2	.G	JJ
-Chromosome6	266267568	T	2	,+1g,+1g	J<	0	*	*	2	,+1g,+1g	JJ	1	,	J	2	,+1g,+1g	J?
-Chromosome6	266328391	T	0	*	*	0	*	*	1	.	o	2	.G	oF	2	G.	Fs
-Chromosome6	266643007	C	0	*	*	3	..A	JJ8	4	..AA	JF88	0	*	*	6	..AAAA	FJ<888
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-Chromosome6	266788622	C	2	.T	JJ	1	.	J	0	*	*	0	*	*	1	T	J
-Chromosome6	266788750	G	2	,a	JJ	1	,	J	0	*	*	0	*	*	1	a	J
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-Chromosome6	267471425	G	1	a	F	2	,,	JJ	3	aa,	JJ7	2	.a	sJ	2	a,	AJ
-Chromosome6	267524800	T	1	.-1A	J	1	.	j	0	*	*	0	*	*	1	.-1A	f
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-Chromosome6	267900380	G	1	A	s	0	*	*	0	*	*	2	,$,	>F	3	a,,	AAJ
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-Chromosome6	267907183	G	3	...	AJJ	0	*	*	4	..A.	JJ>F	3	..A	JJJ	1	A	J
-Chromosome6	267907186	C	2	..	JJ	0	*	*	4	..T.	JJ>J	3	..T	JJJ	1	T	J
-Chromosome6	267907247	A	2	C.	<J	0	*	*	3	CC.	AJF	3	C..	Jjj	1	.	J
-Chromosome6	267907250	T	3	AA.	A7A	0	*	*	2	A.	J<	3	A..	Jes	1	.	J
-Chromosome6	267907262	C	2	A.	<F	0	*	*	4	AA..	JJAA	3	AT.	Foe	1	.	7
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-Chromosome6	267911601	C	0	*	*	1	G	J	2	G,	JJ	0	*	*	2	G.	7A
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-Chromosome6	267913471	G	0	*	*	1	.	J	4	.T..	JJFJ	1	T	J	2	T.	JJ
-Chromosome6	267913507	C	0	*	*	1	.	J	4	.TTT	JJJJ	1	T	J	3	.T.	JJJ
-Chromosome6	267913557	T	0	*	*	1	.	s	4	.CCC	ss\\	1	C	s	3	.C.	\oV
-Chromosome6	267913569	A	0	*	*	1	.	o	4	.CCC	sos5	1	C	R	3	.C.	Mje
-Chromosome6	267916542	G	1	a	J	0	*	*	1	,	J	4	..,A	ssJs	0	*	*
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-Chromosome6	267916602	G	1	a	J	0	*	*	1	,	J	4	..,A	soJs	0	*	*
-Chromosome6	267916639	T	1	a	J	0	*	*	1	,	J	4	,,,A	JJJs	0	*	*
-Chromosome6	267916663	T	1	c	F	0	*	*	1	,	F	4	,,,c	FFFJ	0	*	*
-Chromosome6	267945694	G	1	.	A	0	*	*	1	A	J	2	.A	JJ	0	*	*
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-Chromosome6	268045117	A	0	*	*	0	*	*	3	..G	FJJ	1	.	J	1	T	J
-Chromosome6	268045233	C	0	*	*	0	*	*	3	.-1G.-1G.$	JJJ	1	.-1G	J	1	.$	F
-Chromosome6	268494117	T	0	*	*	0	*	*	2	.C	J<	1	.	J	4	.CC.	AJJ7
-Chromosome6	268494226	C	0	*	*	0	*	*	2	.G	JJ	2	..	Jo	4	.GGT	AJJF
-Chromosome6	268494338	T	0	*	*	0	*	*	2	,c	JJ	1	,	F	4	cccc	AJJJ
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-Chromosome6	268494438	A	0	*	*	0	*	*	2	,g	JA	1	,	J	4	,gg,	AJFJ
-Chromosome6	268632410	A	0	*	*	1	G	J	0	*	*	2	.G	JJ	1	.	J
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-Chromosome6	268632434	A	0	*	*	1	G	s	0	*	*	2	.G	ss	1	.	R
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-Chromosome6	268632476	T	0	*	*	1	C	s	0	*	*	2	.C	ss	1	.	M
-Chromosome6	268729366	A	0	*	*	2	GG	JJ	2	.G	JJ	1	.	J	0	*	*
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-Chromosome6	268729453	G	0	*	*	2	A.	Js	2	.A	JF	1	.	J	0	*	*
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-Chromosome6	280607811	C	0	*	*	2	.A	sC	0	*	*	1	A	s	1	.	s
-Chromosome6	280656384	G	1	.-1A	J	0	*	*	0	*	*	2	.-1A.	7J	1	.-1A	J
-Chromosome6	280779331	A	0	*	*	3	.,g	sJJ	3	g,,	JJJ	2	,g	JJ	3	,g,	JAJ
-Chromosome6	280779333	A	0	*	*	3	.g,	sJJ	3	,g,	JJJ	2	,,	JJ	3	g,g	JFJ
-Chromosome6	280889445	G	1	.	o	0	*	*	5	.A...	fmsss	3	A..	`oo	7	.A.....	s[sssss
-Chromosome6	280902643	A	1	.	J	0	*	*	0	*	*	2	T.	JJ	1	T	J
-Chromosome6	281173512	G	0	*	*	1	.-1A	s	1	.-1A	s	0	*	*	1	.	J
-Chromosome6	281225370	A	1	,	J	2	g,	JJ	0	*	*	0	*	*	1	g	J
-Chromosome6	281278782	T	0	*	*	1	.	s	2	C.	ss	1	C	s	0	*	*
-Chromosome6	281312444	G	0	*	*	2	A.	js	1	A	J	1	,	<	0	*	*
-Chromosome6	281353837	A	1	T	J	2	.T	JJ	0	*	*	0	*	*	1	.	J
-Chromosome6	281353953	G	1	t	A	2	t,	<J	0	*	*	0	*	*	1	,	J
-Chromosome6	281354006	T	1	c	J	2	c,	JJ	0	*	*	0	*	*	1	,	J
-Chromosome6	281354026	G	1	a	J	2	a,	JJ	0	*	*	0	*	*	1	,	J
-Chromosome6	281354063	G	1	t	J	2	t,	JJ	0	*	*	0	*	*	1	,	J
-Chromosome6	281354095	A	1	g	F	2	g,	FF	0	*	*	0	*	*	1	,	F
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-Chromosome6	281445512	C	3	.GG	FFJ	0	*	*	1	.	J	0	*	*	3	..G	JJJ
-Chromosome6	281445513	G	3	AAA	JJJ	0	*	*	1	.	J	0	*	*	3	..A	A<J
-Chromosome6	281445546	C	3	T..	JJJ	0	*	*	1	T	J	0	*	*	3	...	A<J
-Chromosome6	281445593	G	3	A..	JFJ	0	*	*	1	A	J	0	*	*	3	AA.	FJJ
-Chromosome6	281445625	T	3	.CC	JJJ	0	*	*	1	.	J	0	*	*	3	..C	J<J
-Chromosome6	281445711	C	3	tt,	JFJ	0	*	*	1	,	J	0	*	*	3	,,t	JJJ
-Chromosome6	281445713	C	3	aa,	<AF	0	*	*	1	t	J	0	*	*	3	aaa	JJJ
-Chromosome6	281687626	A	1	.	F	0	*	*	3	..G	JJJ	2	.G	JJ	0	*	*
-Chromosome6	281687698	A	1	.	o	0	*	*	3	..G	sJs	2	.G	js	0	*	*
-Chromosome6	281687717	G	1	C	s	0	*	*	3	..C	sJs	2	.C	ss	0	*	*
-Chromosome6	281687755	T	1	,	F	0	*	*	2	,,-1g	JJ	2	,,-1g	JJ	0	*	*
-Chromosome6	281687789	C	1	,-1a	I	0	*	*	2	,-1a,	JJ	1	,	J	0	*	*
-Chromosome6	281772692	A	0	*	*	0	*	*	1	.	J	1	.-3TGT	s	1	.-3TGT	<
-Chromosome6	281773064	A	1	.-1T	?	0	*	*	1	,-1t	F	0	*	*	1	,	J
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-Chromosome6	281849390	G	2	,a	JJ	0	*	*	0	*	*	1	,	J	1	a	J
-Chromosome6	282016502	A	0	*	*	0	*	*	1	g	J	2	,g	J7	3	,,,	FJF
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-Chromosome6	282250903	T	1	.	J	0	*	*	0	*	*	2	C.	JJ	1	C	J
-Chromosome6	282418228	C	2	AA	JJ	0	*	*	1	.	A	2	A.	sJ	0	*	*
-Chromosome6	282423362	T	1	.	J	0	*	*	2	.C	Fo	0	*	*	2	C.	sJ
-Chromosome6	282423450	A	1	,	F	0	*	*	2	t,	JJ	0	*	*	2	t,	FJ
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-Chromosome6	282432505	A	2	g,	7A	0	*	*	1	,	J	0	*	*	2	gg	JJ
-Chromosome6	282436482	T	1	,-4tata	;	1	.-4TATA	;	0	*	*	0	*	*	1	.	s
-Chromosome6	282440135	A	0	*	*	2	G,	JJ	0	*	*	1	,	F	1	G	o
-Chromosome6	282453013	G	1	,-4atac	I	1	,-4atac	F	1	,	J	0	*	*	0	*	*
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-Chromosome6	282482804	A	1	.	J	0	*	*	2	,G	JJ	1	G	J	0	*	*
-Chromosome6	282482835	G	2	..	JA	0	*	*	2	,A	JJ	1	A	J	0	*	*
-Chromosome6	282483144	C	3	.tt	oJ<	0	*	*	2	t.	JJ	1	,	J	0	*	*
-Chromosome6	282484404	T	1	G	s	0	*	*	2	.G	JF	0	*	*	1	.	F
-Chromosome6	282753410	T	0	*	*	2	C.	ss	5	C..C.	sVsss	7	.....C.	osssjsJ	2	CC	ss
-Chromosome6	282869555	C	2	.A	JF	0	*	*	0	*	*	1	.	J	1	A	J
-Chromosome6	283286623	C	1	.	o	2	T.	sj	0	*	*	2	T.	ss	0	*	*
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-Chromosome6	283495578	A	1	g	F	0	*	*	4	gg,,	JJJJ	0	*	*	1	,	J
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-Chromosome6	283533645	C	0	*	*	0	*	*	2	,a	JJ	1	a	J	2	a,	JF
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-Chromosome6	283647733	C	1	.	F	0	*	*	2	GG	<J	0	*	*	2	T.	JJ
-Chromosome6	283647788	A	1	,+1g	H	0	*	*	2	.+1G,+1g	oH	0	*	*	2	.+1G.+1G	om
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-Chromosome6	283949406	T	4	.-1C.-1C.-1C.-1C	AFFA	5	.-1C.-1C.-1C.-1C.-1C	FFFFJ	13	.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C	FJFHFEJFFFFJF	7	.-1C.-1C.-1C.-1C.-1C.-1C.-1C	F<FFFFF	16	.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C.-1C	FFF5FEEJAFFFFHFA
-Chromosome6	283949410	T	1	C	8	1	.	J	4	CA.C	<<J7	2	C.	8J	5	A.CAC	<J8<8
-Chromosome6	284177401	C	2	.T	FF	0	*	*	1	.	F	0	*	*	1	T	J
-Chromosome6	284558119	C	0	*	*	1	.-1G	J	0	*	*	1	.-1G	s	1	.	J
-Chromosome6	284579997	T	2	.C	o7	0	*	*	2	.C	J7	1	.	J	0	*	*
-Chromosome6	284593133	T	1	G	J	1	.	7	0	*	*	0	*	*	2	.G	JJ
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-Chromosome6	284644091	C	0	*	*	0	*	*	2	.G	JJ	1	G	J	3	...	JJJ
-Chromosome6	284644114	G	0	*	*	0	*	*	2	.A	JJ	1	A	J	2	..	JJ
-Chromosome6	284644182	T	0	*	*	0	*	*	2	c,	J7	1	.	s	3	a,,	FJF
-Chromosome6	284644210	T	0	*	*	0	*	*	2	c,	JJ	1	.	s	3	*,,	DJJ
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-Chromosome6	284647536	C	0	*	*	1	.	s	0	*	*	2	.-1T.-1T	sJ	1	.-1T	J
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-Chromosome6	284924304	C	1	t	J	2	,g	JJ	0	*	*	1	,	J	0	*	*
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-Chromosome6	284952558	A	0	*	*	0	*	*	2	..	JJ	2	.G	Fo	1	G	J
-Chromosome6	284952654	C	0	*	*	0	*	*	2	,,	AJ	2	g,	JJ	1	g	J
-Chromosome6	284952661	G	0	*	*	0	*	*	2	,,	7J	2	,-1a,	JJ	1	,-1a	J
-Chromosome6	284952687	C	0	*	*	0	*	*	2	,,	<F	2	t,	?F	1	t	J
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-Chromosome6	285168706	T	3	,g,	JJJ	1	,	F	3	,,g	FJJ	0	*	*	0	*	*
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-Chromosome6	285168760	T	3	c,c	JFF	1	c	F	3	cc,	JJJ	0	*	*	0	*	*
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-Chromosome6	285301352	C	1	.	J	0	*	*	0	*	*	1	T	o	2	T.	FJ
-Chromosome6	285367187	C	0	*	*	1	G	s	1	.	s	3	GG.	`js	0	*	*
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-Chromosome6	285368414	A	2	C.	JJ	0	*	*	0	*	*	1	.	J	1	C	J
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-Chromosome6	285562871	T	1	.-1C	J	0	*	*	1	.	J	1	A	J	0	*	*
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-Chromosome6	285563037	C	1	,	J	0	*	*	2	a,	Js	2	t.	Jk	0	*	*
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-Chromosome6	285573857	T	0	*	*	1	.-1A	J	0	*	*	3	.,c	JJJ	1	.	J
-Chromosome6	285573930	G	0	*	*	1	C	o	0	*	*	3	.a,	sJJ	1	.	s
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-Chromosome6	285866312	C	0	*	*	3	.T.	JJJ	2	..	FJ	0	*	*	1	T	J
-Chromosome6	285866322	C	0	*	*	3	..T	JJJ	2	T.	JJ	0	*	*	1	.	J
-Chromosome6	285866324	G	0	*	*	3	A..	<JJ	2	T.	JJ	0	*	*	1	.	J
-Chromosome6	285866444	C	0	*	*	3	,t,	JJJ	2	a,	JJ	0	*	*	1	T	s
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-Chromosome6	285910473	C	0	*	*	0	*	*	4	...-3GCT.	js[s	2	TT	ss	1	.	s
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-Chromosome6	285982928	C	1	.	J	0	*	*	1	T	J	2	.T	Js	0	*	*
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-Chromosome6	286013108	C	1	.	F	0	*	*	3	.TT	FFF	0	*	*	1	T	F
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-Chromosome6	286013223	A	1	.	J	0	*	*	3	.GG	JJJ	0	*	*	1	G	J
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-Chromosome6	286260082	T	2	.C	JJ	0	*	*	1	C	s	0	*	*	1	.	J
-Chromosome6	286267774	T	3	g,,	AJJ	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome6	286267843	C	3	,,g	FJJ	0	*	*	1	g	J	0	*	*	1	,	J
-Chromosome6	286267853	A	3	g,,	FJ<	0	*	*	1	,	J	0	*	*	1	g	J
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-Chromosome6	286267859	G	3	,,t	FJ7	0	*	*	1	t	J	0	*	*	1	,	J
-Chromosome6	286267861	C	3	t,,	JJ<	0	*	*	1	,	J	0	*	*	1	t	J
-Chromosome6	286651341	C	0	*	*	1	.	J	3	.TT	JJJ	0	*	*	5	....T	7JFJJ
-Chromosome6	286651816	A	0	*	*	1	,	J	3	g,,	JFJ	0	*	*	7	,,g,,,,	JJJFJJ7
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-Chromosome6	286835703	C	1	G	J	1	.	J	3	A..	JsF	0	*	*	0	*	*
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-Chromosome6	287305538	T	3	CC.	JJJ	11	CCCC.CCCC.G	JJJJsJJFJJJ	15	CC...CCA.CCC.CC	JFJFJ<JJJJJJJJJ	7	CCCCCCC	FJJJJJJ	10	CCCCC..CCC	FJAJJJJJJJ
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-Chromosome6	287381189	T	3	.A.	JJJ	0	*	*	2	A.	JJ	0	*	*	2	..	JJ
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-Chromosome6	287760872	A	1	,	J	0	*	*	2	,g	JJ	2	,g	JJ	1	g	A
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-Chromosome6	288615340	C	2	,,	JJ	3	.a,	oFJ	0	*	*	0	*	*	2	t,	JF
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-Chromosome6	290903555	C	2	.-25TGCCTCCGTCTAGAAATAAATATCT.	5J	0	*	*	0	*	*	1	.-25TGCCTCCGTCTAGAAATAAATATCT	5	1	.	J
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-Chromosome6	291186149	T	0	*	*	2	.-1G.	6o	1	.-1G	6	1	.-1G	6	2	.-1G.-1G	65
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-Chromosome6	292446338	C	0	*	*	1	,	J	2	t,	J7	0	*	*	1	t	J
-Chromosome6	292446341	A	0	*	*	1	g	J	2	,g	JJ	0	*	*	1	,	J
-Chromosome6	292446353	A	0	*	*	1	,	J	2	g,	JA	0	*	*	1	g	J
-Chromosome6	292671611	C	0	*	*	1	.	s	0	*	*	2	,t	f`	1	T	s
-Chromosome6	292674011	C	1	.	J	0	*	*	0	*	*	2	T.	JJ	2	T.	AA
-Chromosome6	292674145	G	1	a	F	0	*	*	0	*	*	2	a,	JJ	3	.,a	sJ7
-Chromosome6	292676535	T	3	...	JFA	1	A	J	2	.A	FJ	4	.A..	7AFJ	6	A..A..	<FJJAF
-Chromosome6	292824936	C	0	*	*	1	.	J	1	G	J	0	*	*	2	.G	JJ
-Chromosome6	292825022	G	0	*	*	1	.	f	1	A	s	0	*	*	2	.A	o`
-Chromosome6	292922016	C	1	.-2TG	k	0	*	*	0	*	*	1	.-2TG	o	1	.-2TG	s
-Chromosome6	292922057	C	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J
-Chromosome6	293017947	A	0	*	*	1	.-1C	o	2	,-1c,	HJ	0	*	*	1	,-1c	A
-Chromosome6	293018010	A	0	*	*	1	.	s	2	g,	JJ	0	*	*	1	g	J
-Chromosome6	293058556	A	9	.,,,,,,gg	sJJFAJJAJ	8	.,,,,,,,	oJFJJJJF	11	,gg,ggg,,,,	J<JAJJFFF7F	11	..g,gg,g,,,	ssJJJFJJJ7J	14	g.,,,,g,,,,,,,	JsJJJJJJJJFJJJ
-Chromosome6	293067520	A	0	*	*	2	.T	JJ	0	*	*	1	T	J	1	C	F
-Chromosome6	293067525	G	0	*	*	2	.A	JJ	0	*	*	1	A	J	1	.	<
-Chromosome6	293067526	C	0	*	*	2	.T	JJ	0	*	*	1	T	J	1	.	<
-Chromosome6	293067534	T	0	*	*	2	.A	JJ	0	*	*	1	A	J	1	.	7
-Chromosome6	293068158	A	1	c	J	0	*	*	2	..	Js	0	*	*	2	.C	JJ
-Chromosome6	293287583	A	1	,-1t	J	0	*	*	0	*	*	1	,-1t	J	1	,-1t	J
-Chromosome6	293288349	C	2	T.	7J	0	*	*	0	*	*	1	t	s	1	.	J
-Chromosome6	293289280	T	0	*	*	2	,c	JF	1	,	<	1	c	F	0	*	*
-Chromosome6	293293304	A	1	,-3tag	H	1	.-3TAG	K	0	*	*	0	*	*	1	,-3tag	6
-Chromosome6	293383038	T	1	C	>	0	*	*	1	.	F	0	*	*	3	..C	JJ?
-Chromosome6	293383041	A	1	T	>	0	*	*	1	C	J	0	*	*	3	CCT	JJ?
-Chromosome6	293383048	C	1	T	J	0	*	*	1	.	J	0	*	*	3	..T	JJF
-Chromosome6	293383053	T	1	C	J	0	*	*	1	.	F	0	*	*	3	..C	JJA
-Chromosome6	293452930	A	0	*	*	1	.-1C	s	1	.-1C	J	1	.	s	0	*	*
-Chromosome6	293640285	T	2	A.	7F	0	*	*	1	.	J	2	A.	JJ	1	A	J
-Chromosome6	293876227	G	1	.	F	0	*	*	0	*	*	2	A.	JJ	3	CC.	JJJ
-Chromosome6	293876255	C	1	A	J	0	*	*	0	*	*	2	G.	JJ	3	...	JJJ
-Chromosome6	293876256	A	1	G	J	0	*	*	0	*	*	2	C.	JJ	3	...	JJJ
-Chromosome6	293876308	G	1	.	F	0	*	*	0	*	*	2	..-3CGA	s]	3	...-3CGA	JJ]
-Chromosome6	293876339	C	1	.	F	0	*	*	0	*	*	2	.A	ss	3	..A	JJs
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-Chromosome6	293899946	A	2	,g	JJ	0	*	*	3	g,g	JJJ	0	*	*	1	.	s
-Chromosome6	293900038	G	1	,	J	0	*	*	3	,a,	JJJ	0	*	*	1	A	i
-Chromosome6	293903088	G	3	...	JJJ	2	A.	JJ	2	.A	JJ	2	.A	JJ	7	A...A..	A7JJJJJ
-Chromosome6	293903117	C	4	G.A.	JJJA	3	.T.	JAf	2	..	J:	2	A.	JJ	7	.....TT	JFJJJJF
-Chromosome6	293903145	T	4	C.CC	JJJJ	4	CC.C	JJRJ	2	.C	FJ	2	CC	JJ	7	CCC.CCC	JJJJJJJ
-Chromosome6	293903189	C	4	.A..	osss	4	..T.	jJRs	2	T.	6s	2	.A	sJ	7	..TT...	sossssJ
-Chromosome6	293903212	C	4	.,,,	sJJJ	3	t.t	<sJ	2	at	JJ	2	t,	JJ	6	t,,,,,	JJJFJJ
-Chromosome6	293903230	A	4	C,,c	sJJJ	3	c.c	JsJ	2	,c	J7	2	,c	JJ	7	,,,,,,,	JJJFJJJ
-Chromosome6	293903309	C	4	,,tt	JJJJ	2	,t	JJ	2	,t	JF	2	,a	JJ	7	,,,,g,,	JJJJJJJ
-Chromosome6	293904353	T	0	*	*	2	.c	sF	1	,	A	0	*	*	1	c	J
-Chromosome6	294011162	C	1	T	J	0	*	*	0	*	*	2	.T	oJ	1	.	k
-Chromosome6	294012813	T	0	*	*	1	.-1A	D	0	*	*	2	,-1a^P.	s9	1	.	<
-Chromosome6	294013281	C	0	*	*	2	.G	JJ	4	..T.	JJJJ	2	.T	JJ	0	*	*
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-Chromosome6	294013302	G	0	*	*	2	.A	FJ	4	..A.	JoJJ	2	..	JJ	0	*	*
-Chromosome6	294013337	C	0	*	*	3	A..	oso	4	..T.	ssoo	2	..	js	0	*	*
-Chromosome6	294013345	G	0	*	*	3	A..	oss	4	A..A	s[ss	2	..	`s	0	*	*
-Chromosome6	294013350	A	0	*	*	3	CCC	oss	4	C.CC	ssss	2	CT	os	0	*	*
-Chromosome6	294013355	G	0	*	*	3	...	oss	4	.+1T...+1T	ssso	2	.A	os	0	*	*
-Chromosome6	294013399	G	0	*	*	3	..A	oss	4	....	ssss	2	A.	\s	0	*	*
-Chromosome6	294013405	G	0	*	*	3	...	jss	4	.T..	ssss	2	.A	os	0	*	*
-Chromosome6	294013428	C	0	*	*	3	,t,	JFJ	4	,,gg	JJJJ	2	,,	JJ	0	*	*
-Chromosome6	294013449	G	0	*	*	3	,a,	JJJ	3	,,,	JJJ	2	aa	JJ	0	*	*
-Chromosome6	294015891	C	2	,t	JJ	0	*	*	2	.g	sJ	0	*	*	1	,	7
-Chromosome6	294015895	G	2	,a	JJ	0	*	*	2	.a	oF	0	*	*	1	,	J
-Chromosome6	294015931	G	2	a,	JJ	0	*	*	2	.a	jJ	0	*	*	1	,	F
-Chromosome6	294023182	G	2	..	JJ	2	T.	JJ	0	*	*	0	*	*	1	T	J
-Chromosome6	294023251	C	2	TT	JJ	3	...	9JJ	0	*	*	0	*	*	2	T.	JJ
-Chromosome6	294023317	T	2	cc	JJ	3	.,c	sFJ	0	*	*	0	*	*	2	.,	sJ
-Chromosome6	294024817	C	0	*	*	2	.T	os	0	*	*	1	T	j	1	.	F
-Chromosome6	294090453	A	1	g	F	1	.	s	0	*	*	0	*	*	2	gc	JJ
-Chromosome6	294118396	G	1	.	J	1	A	J	0	*	*	3	.A.	JJJ	0	*	*
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-Chromosome6	294173018	A	1	.	o	0	*	*	0	*	*	2	T.	JJ	1	T	J
-Chromosome6	294173024	G	1	.	`	0	*	*	0	*	*	2	.A	JJ	1	A	J
-Chromosome6	294226508	G	3	T.T	<sF	1	.	J	1	T	F	0	*	*	0	*	*
-Chromosome6	294268895	G	0	*	*	3	.AA	JJJ	1	.	J	1	T	o	0	*	*
-Chromosome6	294268946	C	0	*	*	3	G..	JJJ	1	G	J	1	.	`	0	*	*
-Chromosome6	294268956	G	0	*	*	3	..T	sJJ	1	.	s	1	C	e	0	*	*
-Chromosome6	294268974	G	0	*	*	3	.CC	oJJ	1	.	o	1	T	s	0	*	*
-Chromosome6	294349170	G	1	A	<	1	.	J	0	*	*	0	*	*	3	.A.	J7J
-Chromosome6	294349468	C	1	a	J	1	.	s	0	*	*	0	*	*	3	a,,	FJF
-Chromosome6	294349501	C	1	a	J	1	.	s	0	*	*	0	*	*	3	a,,	JJF
-Chromosome6	294349518	C	1	t	J	1	,	J	0	*	*	0	*	*	3	t,,	JJJ
-Chromosome6	294403630	T	2	.C	FF	1	.	F	2	CC	FF	0	*	*	0	*	*
-Chromosome6	294403672	G	2	A.	FJ	1	.	J	2	AA	JJ	0	*	*	0	*	*
-Chromosome6	294438798	A	2	.C	JA	0	*	*	0	*	*	1	C	J	2	..	JJ
-Chromosome6	294438805	C	2	T.	JJ	0	*	*	0	*	*	1	.	<	2	T.	<J
-Chromosome6	294438809	G	2	.-4TTAA.-4TTAA	JJ	0	*	*	0	*	*	1	.-4TTAA	J	2	.-4TTAA.-4TTAA	<J
-Chromosome6	294438862	A	1	.-1G	J	0	*	*	0	*	*	1	.-1G	J	2	.-1G.-1G	FJ
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-Chromosome6	294746250	A	1	.-1T	J	0	*	*	0	*	*	1	.-1T	J	1	.-1T	J
-Chromosome6	294752095	T	1	.-2GC	J	2	.-2GC.-2GC	JJ	0	*	*	0	*	*	2	.-2GC.	JJ
-Chromosome6	294752166	T	1	.-3TAG	:	2	.-3TAG.-3TAG	::	0	*	*	0	*	*	2	.-3TAG.-3TAG	7:
-Chromosome6	294752335	C	1	,-2aa	7	2	,-2aa,-2aa	JJ	0	*	*	0	*	*	2	,-2aa,-2aa	JJ
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-Chromosome6	295098235	G	0	*	*	1	.-2TT	J	1	.-1T	<	1	.-2TT	F	1	.-2TT	F
-Chromosome6	295105476	C	1	,	o	1	g	J	2	tg	JJ	0	*	*	0	*	*
-Chromosome6	295475795	G	0	*	*	0	*	*	1	.-1A	J	1	.-1A	J	1	.-1A	J
-Chromosome6	295495238	C	0	*	*	1	.	J	0	*	*	1	T	F	2	.T	JA
-Chromosome6	295495307	T	0	*	*	1	.	s	0	*	*	1	C	s	2	C.	sJ
-Chromosome6	295570709	A	0	*	*	1	,-1t	J	1	,-1t	J	0	*	*	2	,-1t,-1t	JJ
-Chromosome6	295643555	G	1	.-1T	D	0	*	*	0	*	*	1	.	J	1	.-1T	E
-Chromosome6	295889482	T	0	*	*	0	*	*	1	.-6TATATA	:	1	.-6TATATA	:	1	.-6TATATA	:
-Chromosome6	295901866	T	3	..C	ssF	0	*	*	4	.C..	sJks	3	...	osJ	4	..CC	oFJF
-Chromosome6	295901868	A	3	...	soJ	0	*	*	4	.G..	sFjs	3	C..	ssJ	4	C...	oFJF
-Chromosome6	296029841	T	0	*	*	1	,	F	0	*	*	1	.-1C	j	1	,-1c	J
-Chromosome6	296103007	A	0	*	*	1	.	s	2	.G	sq	2	.g	oH	0	*	*
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-Chromosome6	296103054	C	0	*	*	1	.	s	2	.T	ss	2	.t	ss	0	*	*
-Chromosome6	296103125	T	0	*	*	1	.	s	2	.A	ss	2	.a	ss	0	*	*
-Chromosome6	296103140	G	0	*	*	1	.	s	2	.A	ss	2	.a	sJ	0	*	*
-Chromosome6	296123634	C	0	*	*	1	,-9atcccgagt	I	0	*	*	1	,-9atcccgagt	I	1	.	J
-Chromosome6	296213389	A	1	,	A	0	*	*	1	.-14TATTGTTGTGTATG	Y	1	,-14tattgttgtgtatg	=	0	*	*
-Chromosome6	296220733	T	6	.GGGGG	J7JJJJ	1	.	J	3	..G	JJJ	2	GG	FJ	7	G..GGGG	7FJJJJJ
-Chromosome6	296220747	C	6	...T..	F<JJJF	1	.	J	3	.T.	JJF	2	T.	JJ	7	...T...	JFFJJJJ
-Chromosome6	296220925	C	5	,,,,t	J<JJF	0	*	*	3	,,,	JJJ	2	t,	JF	6	,g,t,,	7JJJJJ
-Chromosome6	296274081	T	2	c,	<J	0	*	*	0	*	*	3	,,,	JJJ	1	c	J
-Chromosome6	296274091	C	2	t,	JA	0	*	*	0	*	*	3	,,,	A<F	1	t	J
-Chromosome6	296274109	C	2	,t	JJ	0	*	*	0	*	*	3	,tt	7JJ	1	,	J
-Chromosome6	296367997	A	0	*	*	2	,,	JJ	2	g,	JJ	2	gg	JJ	0	*	*
-Chromosome6	296368003	C	1	t	J	2	t,	JJ	2	,t	JJ	2	,,	JJ	0	*	*
-Chromosome6	296418260	C	0	*	*	1	T	M	2	T.	cR	2	T.	js	3	.TT	sss
-Chromosome6	296464053	A	2	,,	os	0	*	*	0	*	*	2	,G	s9	3	gGG	OE9
-Chromosome6	296464066	A	2	,,-3aat	U>	0	*	*	0	*	*	1	,-3aat	?	3	,-3aat.-3AAT.-3AAT	???
-Chromosome6	296464117	C	2	,A	CA	0	*	*	0	*	*	2	,.	ss	3	a.A	sss
-Chromosome6	296464118	C	2	,,	A\	0	*	*	0	*	*	2	,A	ss	3	t.T	oss
-Chromosome6	296464122	C	2	,t	sk	0	*	*	0	*	*	2	tT	ss	3	,T.	jos
-Chromosome6	296464168	C	2	,,	oo	0	*	*	0	*	*	1	g	F	3	,.a	ojF
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-Chromosome6	296499503	T	0	*	*	1	A	s	0	*	*	2	GA	ss	3	.AA	Jss
-Chromosome6	296499515	T	0	*	*	1	C	s	0	*	*	2	.C	oo	3	.CC	Jss
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-Chromosome6	296684284	A	0	*	*	2	G.	JJ	0	*	*	1	.	J	5	.GGG.	JJJJJ
-Chromosome6	296852865	G	0	*	*	2	..	Hs	1	A	J	2	.,-1t	Js	0	*	*
-Chromosome6	296852870	T	0	*	*	2	.+1C.+1C	ae	1	.	J	1	C	J	0	*	*
-Chromosome6	296852989	C	0	*	*	1	,-2at	J	1	,-2at	J	2	,,-2at	AJ	1	.-2AT	s
-Chromosome6	296876699	T	1	.-1C	J	1	.-1C	F	0	*	*	1	.-1C	J	1	.-1C	J
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-Chromosome6	297188093	G	0	*	*	1	.-2GT	S	0	*	*	1	.-2GT	S	1	,-2gt	9
-Chromosome6	297206384	C	0	*	*	0	*	*	1	t	J	2	,t	sJ	1	,	J
-Chromosome6	297206388	G	0	*	*	0	*	*	1	,-3ttt	J	2	,-3ttt,-3ttt	sJ	1	,	J
-Chromosome6	297256235	G	2	a,	JF	0	*	*	0	*	*	1	a	J	2	,,	J7
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-Chromosome6	297341985	A	0	*	*	0	*	*	2	CC	<7	3	,C.	A<7	1	.	J
-Chromosome6	297341994	T	0	*	*	0	*	*	1	C	<	3	,C.	F7A	1	.	<
-Chromosome6	297346886	C	0	*	*	2	.T	nJ	0	*	*	2	T.	Jj	1	.	[
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-Chromosome6	297502255	T	4	.,,.	aJJj	5	,,.,G	JAVF<	0	*	*	10	,,...g,Gg,	J:oooFJ`JJ	1	g	F
-Chromosome6	297502816	C	1	G	s	0	*	*	4	a..G	AWe7	3	.G.	s>J	0	*	*
-Chromosome6	297503188	C	1	A	s	0	*	*	2	,T	JW	1	.	k	0	*	*
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-Chromosome6	297506302	T	3	.,C	VsF	2	.C	oA	0	*	*	2	,C	sJ	0	*	*
-Chromosome6	297512239	G	0	*	*	3	,,a	JJF	2	Aa	`<	3	,,,	JJJ	0	*	*
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-Chromosome6	297564386	C	0	*	*	2	,a	JJ	1	a	J	0	*	*	1	,	J
-Chromosome6	297564413	C	0	*	*	2	,t	JJ	1	t	<	0	*	*	1	,	J
-Chromosome6	297747794	C	2	T.	JJ	0	*	*	1	.	o	1	T	J	0	*	*
-Chromosome6	297749885	C	1	.	?	0	*	*	1	.-1G	j	0	*	*	1	.-1G	J
-Chromosome6	297749994	A	0	*	*	1	.-1T	A	1	,	J	0	*	*	1	.-3TTT	J
-Chromosome6	297750189	C	1	,	F	1	,-1a	J	1	,-1a	J	0	*	*	1	,-1a	J
-Chromosome6	297831605	C	1	.	J	2	.G	JJ	0	*	*	1	G	J	0	*	*
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-Chromosome6	297831673	T	1	.	J	2	.A	FF	0	*	*	1	A	J	0	*	*
-Chromosome6	297832153	G	1	c	J	2	c,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome6	297832180	A	1	,-1t	A	2	,-1t,	JJ	0	*	*	1	,	J	0	*	*
-Chromosome6	297843935	T	2	c,	JJ	2	,,	FF	1	c	J	0	*	*	0	*	*
-Chromosome6	297854022	T	1	c	J	1	.	s	2	,C	Js	0	*	*	0	*	*
-Chromosome6	297854076	C	1	,-1t	J	1	.	s	3	,.,-1t	JJJ	0	*	*	0	*	*
-Chromosome6	298473366	G	0	*	*	0	*	*	1	A	F	3	...	FsF	2	A.	JA
-Chromosome6	298473438	A	1	.	J	0	*	*	0	*	*	2	CC	sJ	2	C.	JJ
-Chromosome6	298474401	C	1	.	7	0	*	*	2	TT	`s	0	*	*	3	T..	7As
-Chromosome6	298474423	C	1	.	A	0	*	*	2	TT	oa	0	*	*	2	.T	Js
-Chromosome6	298537051	G	0	*	*	2	..	JJ	3	..A	JAJ	5	....A	JJJJJ	0	*	*
-Chromosome6	298579302	A	1	.	a	2	TT	ss	0	*	*	3	.TT	Fss	0	*	*
-Chromosome6	298579357	A	1	.	V	2	Gg	sJ	0	*	*	3	.gg	oJJ	0	*	*
-Chromosome6	298579369	G	1	,-1a	J	1	.-1A	s	0	*	*	3	.,-1a,-1a	VJJ	0	*	*
-Chromosome6	298656953	G	1	,-3aga	:	0	*	*	0	*	*	2	,-3aga,-3aga	::	1	,-3aga	:
-Chromosome6	298657028	T	1	,-1a	A	0	*	*	0	*	*	2	,-1a,-1a	AJ	1	,-1a	J
-Chromosome6	298663066	A	1	.-1G	J	0	*	*	0	*	*	1	.-1G	J	1	.	s
-Chromosome6	298673985	G	0	*	*	1	.-3CTT	s	0	*	*	1	,-3ctt	J	1	,+3ctc	J
-Chromosome6	298904159	C	0	*	*	3	T..	JJJ	1	.	F	1	T	J	0	*	*
-Chromosome6	298904240	T	0	*	*	3	G..	sjo	1	.	s	1	G	s	0	*	*
-Chromosome6	298904285	C	0	*	*	3	ATT	sVR	1	T	o	1	A	s	0	*	*
-Chromosome6	299003089	G	2	.A	JJ	1	A	s	0	*	*	1	,	e	0	*	*
-Chromosome6	299003100	G	2	C.	JJ	1	.	s	0	*	*	1	c	s	0	*	*
-Chromosome6	299003141	T	2	.G	JJ	1	G	s	0	*	*	1	,	o	0	*	*
-Chromosome6	299004708	G	1	t	J	0	*	*	2	t,	JJ	1	.	s	0	*	*
-Chromosome6	299013049	C	0	*	*	4	,...	J<JJ	3	t..	JsJ	1	t	J	0	*	*
-Chromosome6	299013334	C	5	,,,,,	AJJJJ	8	,,,,,,,a	JJJAJ<7A	8	,,,,,,,a	FJJFFAJF	2	,a	JF	14	,,,,,,,,,,,,a,	FJAF7JJJAAJJFA
-Chromosome6	299081943	C	0	*	*	2	.T	os	1	,	s	3	A.,	ssJ	0	*	*
-Chromosome6	299145775	G	0	*	*	0	*	*	1	.	J	1	T	J	2	T.	J7
-Chromosome6	299145780	G	0	*	*	0	*	*	1	.	J	1	A	J	2	A.	JJ
-Chromosome6	299145832	G	0	*	*	0	*	*	1	A	J	1	.	J	2	.A	JJ
-Chromosome6	299145839	T	0	*	*	0	*	*	1	.-4GATC	;	1	.-4GATC	;	2	.-4GATC.-4GATC	;7
-Chromosome6	299528057	A	1	,	J	0	*	*	2	G.	Vs	2	G,	\F	0	*	*
-Chromosome6	299528075	C	1	t	J	0	*	*	2	T,	sF	2	,a	J<	0	*	*
-Chromosome6	299528078	G	1	a	J	0	*	*	2	.t	sJ	2	a,	J<	0	*	*
-Chromosome6	299528081	T	1	a	J	0	*	*	2	.,	oJ	2	a,	J7	0	*	*
-Chromosome6	299528090	T	1	c	J	0	*	*	2	.,	sJ	2	c,	J7	0	*	*
-Chromosome6	299673240	A	0	*	*	1	,	J	0	*	*	2	gg	JJ	4	ggg,	JJJJ
-Chromosome6	300022707	T	1	.	s	2	.+2AA.	oJ	3	,-1a..	JJJ	0	*	*	0	*	*
-Chromosome6	300022816	C	0	*	*	1	T	j	2	t,	JJ	0	*	*	1	,	J
-Chromosome6	300093735	G	0	*	*	1	T	J	0	*	*	2	T.	JJ	2	T.	<F
-Chromosome6	300093757	T	0	*	*	1	.-2TG	<	0	*	*	2	.-2TG.-2TG	<<	2	.-2TG.	=A
-Chromosome6	300093869	T	0	*	*	1	c	J	0	*	*	3	,cC	JJ\	2	ca	J<
-Chromosome6	300093898	T	0	*	*	1	,+1c	F	0	*	*	3	,,+1c.+1C	JJo	2	,+1c,+1c	J<
-Chromosome6	300093939	G	0	*	*	1	c	J	0	*	*	3	,c.	JJs	2	,,	JA
-Chromosome6	300290011	A	1	.	J	0	*	*	2	g.	sJ	0	*	*	1	G	<
-Chromosome6	300290014	G	1	A	J	0	*	*	2	,A	sA	0	*	*	1	.	A
-Chromosome6	300290025	G	1	.-3TTT	J	0	*	*	2	,-3ttt.-3TTT	sJ	0	*	*	1	.-3TTT	J
-Chromosome6	300290067	C	1	T	J	0	*	*	2	,T	sJ	0	*	*	1	.	<
-Chromosome6	300290975	G	0	*	*	1	,-1a	<	2	,-1a,-2aa	J?	1	,-3aaa	J	0	*	*
-Chromosome6	300324332	G	0	*	*	1	.-5ACCGT	S	1	.-5ACCGT	:	1	.-5ACCGT	:	0	*	*
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-Chromosome6	300353611	T	1	c	J	0	*	*	1	,	J	2	.c	jJ	0	*	*
-Chromosome6	300353627	C	1	t	J	0	*	*	1	,	J	2	T,	sJ	0	*	*
-Chromosome6	300353667	G	1	,	J	0	*	*	1	a	A	2	a,	JJ	0	*	*
-Chromosome6	300384485	T	0	*	*	1	.-1C	G	0	*	*	1	.-1C	G	1	.	J
-Chromosome6	300438107	A	0	*	*	4	.gGG	jJss	1	G	j	0	*	*	1	.	J
-Chromosome6	300438117	C	0	*	*	4	.tTT	HJss	1	T	s	0	*	*	1	.	F
-Chromosome6	300438120	G	0	*	*	4	aAA,	Joo:	1	A	o	0	*	*	1	.	A
-Chromosome6	300438124	T	0	*	*	4	cCC,	JssA	1	C	s	0	*	*	1	.	F
-Chromosome6	300438227	C	0	*	*	4	a,aa	CF@@	1	a	J	0	*	*	1	,	J
-Chromosome6	300489133	G	0	*	*	1	.	s	0	*	*	2	.C	sA	1	C	F
-Chromosome6	300489136	T	0	*	*	1	.	s	0	*	*	2	.C	sJ	1	C	J
-Chromosome6	300489157	G	0	*	*	1	.-9ACGATCGAC	I	0	*	*	2	.-9ACGATCGAC.	^j	1	.	J
-Chromosome6	300489186	T	0	*	*	1	C	s	0	*	*	2	C.	J`	1	.	J
-Chromosome6	300489192	G	0	*	*	1	A	n	0	*	*	2	A.	Jj	1	.	F
-Chromosome6	300496498	C	3	.T.	JJJ	0	*	*	1	T	J	0	*	*	2	.T	JJ
-Chromosome6	300496500	G	3	T.T	JJJ	0	*	*	1	.	J	0	*	*	2	T.	JJ
-Chromosome6	300496511	A	3	.-1T..-1T	JJJ	0	*	*	1	.	J	0	*	*	2	.-1T.	JJ
-Chromosome6	300496561	T	3	.-1A..-1A	FJJ	0	*	*	1	.	J	0	*	*	2	.-1A.	JJ
-Chromosome6	300496683	T	3	c,c	JJJ	0	*	*	1	,	J	0	*	*	2	c,	JJ
-Chromosome6	300616419	A	1	.-5GCTCG	O	1	.-5GCTCG	8	1	.	o	0	*	*	0	*	*
-Chromosome6	300731683	A	2	GG	JJ	1	.	A	4	G...	JAAA	2	G.	JA	3	GG.	JFA
-Chromosome6	300731764	C	0	*	*	1	.	s	4	T...	FJJJ	2	T.	JF	1	T	J
-Chromosome6	300731822	G	0	*	*	1	.	s	5	....a	osskJ	3	..a	ssJ	3	.a,	fFA
-Chromosome6	300748865	G	1	.	J	0	*	*	0	*	*	2	A,	FJ	1	A	J
-Chromosome6	300912586	A	1	,-1t	7	0	*	*	1	,	F	1	,-1t	F	0	*	*
-Chromosome6	300938902	A	1	.-6AGTCAC	I	1	,+1c	F	0	*	*	1	.-6AGTCAC	5	1	.-6AGTCAC	5
-Chromosome6	301195322	C	2	..	Js	0	*	*	2	.T	JJ	0	*	*	1	T	J
-Chromosome6	301195334	C	2	..	Js	0	*	*	2	TA	J]	0	*	*	1	A	J
-Chromosome6	301270456	T	2	,c	JJ	0	*	*	2	,c	JF	1	,	J	2	,c	JJ
-Chromosome6	301292130	A	1	,	J	3	,,g	JJA	0	*	*	1	g	J	0	*	*
-Chromosome6	301482242	C	3	,-4ctct,-4ctct,-4ctct	989	1	,-4ctct	9	1	,-4ctct	9	0	*	*	0	*	*
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-Chromosome6	301509809	G	0	*	*	1	t	J	0	*	*	2	,T	Js	1	,	A
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-Chromosome6	301511360	G	1	,	7	0	*	*	2	,A	Js	1	t	J	0	*	*
-Chromosome6	301519008	T	1	.	J	2	,C	sJ	0	*	*	0	*	*	1	C	J
-Chromosome6	301519029	T	1	.	J	2	,G	sJ	0	*	*	1	g	J	1	A	J
-Chromosome6	301594924	T	0	*	*	1	,-1a	E	0	*	*	1	,-1a	E	2	,,	JJ
-Chromosome6	301739529	C	2	.T	AJ	0	*	*	2	TT	JF	0	*	*	1	.	J
-Chromosome6	301739776	A	1	g	J	0	*	*	2	,g	F<	0	*	*	1	,	J
-Chromosome6	301739882	G	2	a,	F7	0	*	*	1	a	J	0	*	*	1	,	J
-Chromosome6	301739918	G	2	a,	JJ	0	*	*	1	a	J	0	*	*	1	,	J
-Chromosome6	301816325	A	1	g	J	1	,	J	0	*	*	2	.g	eJ	0	*	*
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-Chromosome6	301816365	C	1	,	<	1	t	J	0	*	*	2	T,	j<	0	*	*
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-Chromosome6	302115989	G	0	*	*	0	*	*	3	t,,	JJJ	3	,$T,	@sJ	1	,	J
-Chromosome6	302115990	T	0	*	*	0	*	*	3	a,,	JAJ	2	A,	sJ	1	,	J
-Chromosome6	302116003	G	0	*	*	0	*	*	3	a,,	JFJ	2	a,	JJ	1	,	F
-Chromosome6	302279432	G	3	CC.	B87	0	*	*	3	..T	9F7	0	*	*	1	.	o
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-Chromosome6	302357957	T	2	..	FJ	0	*	*	0	*	*	2	.C	JJ	1	C	J
-Chromosome6	302357976	A	2	..	7J	0	*	*	0	*	*	2	.G	JJ	1	G	J
-Chromosome6	302368498	A	0	*	*	1	.	s	1	G	J	2	.G	JJ	0	*	*
-Chromosome6	302368595	G	0	*	*	1	,	J	1	,-3cta	F	2	.-3CTA,	sJ	0	*	*
-Chromosome6	302552298	T	1	,-1g	F	0	*	*	2	,-1g,-1g	FF	2	,-1g,-1g	FF	1	,-1g	F
-Chromosome6	302696172	T	1	,-1c	J	1	,-1c	F	0	*	*	1	,-1c	J	4	,-1c,-1c,-1c,-1c	JJJJ
-Chromosome6	302846809	G	2	..	JJ	0	*	*	1	.-2AA	J	0	*	*	1	.-2AA	F
-Chromosome6	303170879	T	0	*	*	1	,	J	0	*	*	3	a,,	7JJ	1	a	J
-Chromosome6	303170930	C	0	*	*	1	t	J	0	*	*	3	,tt	JFJ	1	,	J
-Chromosome6	303376233	C	0	*	*	0	*	*	3	.A,	JJJ	1	A	s	1	.	J
-Chromosome6	303376319	A	0	*	*	0	*	*	3	T.t	JJJ	1	T	s	1	.	J
-Chromosome6	303376745	G	1	.-2CT	A	1	.-2CT	J	1	.	J	0	*	*	0	*	*
-Chromosome6	303376955	T	1	,-1a	F	1	,-1a	F	1	,	J	0	*	*	0	*	*
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-Chromosome6	303551272	A	1	.-3TAC	;	0	*	*	1	.-3TAC	;	0	*	*	1	.-3TAC	;
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-Chromosome6	303553847	T	0	*	*	0	*	*	1	^Z.	A	1	C	J	2	C.$	JE
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-Chromosome6	303556493	C	2	T.	JJ	2	.T	JJ	0	*	*	1	T	J	0	*	*
-Chromosome6	303556524	C	2	T.	FJ	2	..	JJ	0	*	*	1	T	F	0	*	*
-Chromosome6	303556531	G	2	A.	JJ	2	..	JJ	0	*	*	1	A	J	0	*	*
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-Chromosome6	303556550	C	2	T.	JJ	2	..	JJ	0	*	*	1	T	J	0	*	*
-Chromosome6	303602868	T	1	.	J	2	.C	JJ	3	C..	JJJ	0	*	*	3	..C	JJJ
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-Chromosome6	303711460	T	1	C	J	0	*	*	1	.	J	2	C.	JJ	0	*	*
-Chromosome6	303711595	A	1	c	J	0	*	*	1	,	J	2	,c	JJ	0	*	*
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-Chromosome6	303711610	T	1	c	J	0	*	*	1	,	J	2	,c	JJ	0	*	*
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-Chromosome6	303974664	C	0	*	*	1	T	J	2	.T	JJ	0	*	*	2	T.	JJ
-Chromosome6	304082504	A	0	*	*	0	*	*	1	C	e	2	C.	so	1	.	o
-Chromosome6	304082513	T	0	*	*	0	*	*	1	c	J	2	c,	JJ	1	,	J
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-Chromosome6	304109171	C	0	*	*	2	g,	JJ	1	,	A	0	*	*	1	g	F
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-Chromosome6	304145874	G	1	t	J	0	*	*	0	*	*	2	,,	JJ	2	,t	JJ
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-Chromosome6	304206519	A	2	TC	JJ	1	T	J	0	*	*	0	*	*	2	TC	AF
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-Chromosome6	304206562	C	2	A.	JJ	1	A	J	0	*	*	0	*	*	2	..	JJ
-Chromosome6	304206575	G	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5<
-Chromosome6	304206576	G	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5F
-Chromosome6	304206579	A	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5A
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-Chromosome6	304206581	A	2	*.	5J	1	*	5	0	*	*	0	*	*	2	*.	5A
-Chromosome6	304206590	T	2	A.	JJ	1	A	J	0	*	*	0	*	*	2	A.	FJ
-Chromosome6	304206594	C	2	T.	JJ	1	T	<	0	*	*	0	*	*	2	T.	FA
-Chromosome6	304206606	A	2	T.	JJ	1	T	J	0	*	*	0	*	*	2	T.	JA
-Chromosome6	304206804	T	2	a,	JF	1	,	J	0	*	*	0	*	*	2	aa	FF
-Chromosome6	304206809	C	2	,-3agt,	JF	1	,	J	0	*	*	0	*	*	2	,-3agtt	JF
-Chromosome6	304206823	T	2	,,-1a	JJ	1	,-1a	F	0	*	*	0	*	*	2	,,-1a	F:
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-Chromosome6	304263102	C	4	,,,,	JJJF	0	*	*	2	t,	<J	0	*	*	6	.a,,,,	sFJJ<<
-Chromosome6	304263113	G	4	,,aa	FJJJ	0	*	*	2	,,	FJ	0	*	*	6	.,t,,,	oJJJJA
-Chromosome6	304263121	T	2	gg	JJ	0	*	*	1	,	J	0	*	*	6	.,,,g,	sFJJJJ
-Chromosome6	304263127	T	3	,,,	FJJ	0	*	*	1	c	J	0	*	*	6	.,,c,,	sJJJ<F
-Chromosome6	304263150	G	3	,,,	JJJ	0	*	*	1	t	J	0	*	*	6	.$,,t,,	nJJJF7
-Chromosome6	304263958	C	0	*	*	2	t,	JJ	0	*	*	1	.	F	1	a	A
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-Chromosome6	304334696	A	0	*	*	1	G	s	1	.	W	2	,g	JJ	0	*	*
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-Chromosome6	324097623	C	0	*	*	1	.	J	1	A	J	0	*	*	4	..A.	JJJJ
-Chromosome6	324103496	C	0	*	*	1	T	F	1	.	J	2	.G	Je	0	*	*
-Chromosome6	324103584	G	0	*	*	2	..	7J	1	T	F	2	T.	Js	0	*	*
-Chromosome6	324104964	T	0	*	*	1	.-5TACAC	<	1	.-5TACAC	=	0	*	*	1	.-5TACAC	=
-Chromosome6	324123179	T	0	*	*	0	*	*	2	,g	FJ	1	g	J	2	,,	JJ
-Chromosome6	324346411	C	0	*	*	0	*	*	2	T.	ss	1	.	s	2	.T	ss
-Chromosome6	324430836	G	3	,CC	sJJ	0	*	*	1	C	J	1	.	J	0	*	*
-Chromosome6	324430885	C	3	,.-1T.-1T	sFJ	0	*	*	1	.-1T	J	1	.	J	0	*	*
-Chromosome6	324430902	T	3	,CC	s7J	0	*	*	1	C	J	1	.	J	0	*	*
-Chromosome6	324430912	T	3	,CC	sJJ	0	*	*	1	C	J	1	.	F	0	*	*
-Chromosome6	324430918	C	3	t.-1T.-1T	sJJ	0	*	*	1	.	J	1	T	F	0	*	*
-Chromosome6	324556391	G	0	*	*	1	.	o	1	A	J	4	..AA	JJsV	0	*	*
-Chromosome6	324556401	A	0	*	*	1	.	s	1	G	J	4	..GG	JJss	0	*	*
-Chromosome6	324632081	G	0	*	*	1	A	J	1	.	J	2	.A	JJ	0	*	*
-Chromosome6	324632228	G	0	*	*	1	a	J	1	,	J	2	,a	JJ	0	*	*
-Chromosome6	324636553	G	0	*	*	0	*	*	1	.-2AT	J	1	.	J	2	..-2AT	JJ
-Chromosome6	324636616	A	0	*	*	0	*	*	1	G	V	1	.	s	2	.G	ss
-Chromosome6	324653957	T	5	,aa,,	JJJF<	5	,,,,,	FJAJJ	2	aa	7J	8	,,,,a,,,	J<<<AJAA	7	,a,,,aa	JJJ7JJJ
-Chromosome6	324654298	G	4	a,,,	JJJJ	0	*	*	0	*	*	1	.	s	1	a	F
-Chromosome6	324860329	T	0	*	*	0	*	*	2	C.	FJ	1	.	J	2	CC	JJ
-Chromosome6	324860332	G	0	*	*	0	*	*	2	C.	JJ	1	.	J	2	CC	JJ
-Chromosome6	324862737	A	1	C	J	2	T.	FJ	2	.C	JF	2	.C	JJ	2	..	JJ
-Chromosome6	324862799	A	1	.	J	2	.G	JJ	2	G.	J7	2	G.	FJ	2	.G	JA
-Chromosome6	324888414	A	0	*	*	2	.,	Ja	0	*	*	2	,G	H7	1	G	A
-Chromosome6	324951331	T	0	*	*	0	*	*	1	.	s	1	C	J	4	..C.	JJFJ
-Chromosome6	324951416	C	0	*	*	0	*	*	1	,	J	1	t	J	4	g,,,	JJFJ
-Chromosome6	324953309	C	5	....T	J7JJJ	0	*	*	8	......TT	AJJJJAF<	2	T.	JJ	6	......	J<JJJJ
-Chromosome6	324953554	T	3	,c,	JJ<	0	*	*	7	,,,,c,,	JJAJJJF	2	,,	AF	4	,c,,	J7FF
-Chromosome6	325124671	A	0	*	*	1	.	J	2	G.	JJ	1	G	s	0	*	*
-Chromosome6	325127737	A	0	*	*	2	.+1T.	bJ	2	.,	JJ	3	..g	JJJ	0	*	*
-Chromosome6	325150828	A	0	*	*	0	*	*	1	C	J	2	..	JJ	2	T.	JJ
-Chromosome6	325151005	A	0	*	*	0	*	*	1	g	J	1	,	J	3	.gg	WJ<
-Chromosome6	325178023	T	2	.C	sJ	1	C	J	0	*	*	2	.C	JA	1	.$	A
-Chromosome6	325325432	C	2	.+7GAGGTAT.+7GAGGTAT	GJ	0	*	*	0	*	*	2	.+7GAGGTAT.+7GAGGTAT	HC	1	.+7GAGGTAT	s
-Chromosome6	325325444	T	2	.+4CTGC.+4CTGC	77	0	*	*	0	*	*	2	.+4CTGC.+4CTGC	77	2	.+4CTGC,+4ctgc	77
-Chromosome6	325350609	G	2	..	<J	0	*	*	1	A	F	0	*	*	2	.A	JJ
-Chromosome6	325601817	A	0	*	*	1	.	J	0	*	*	1	G	J	2	G.	JJ
-Chromosome6	325660546	C	0	*	*	1	,-1t	J	1	,-1t	J	0	*	*	1	,-1t	J
-Chromosome6	325732633	G	0	*	*	1	T	J	2	T.	JJ	0	*	*	1	.	J
-Chromosome6	325732771	G	0	*	*	1	T	s	2	t,	JJ	0	*	*	1	,	J
-Chromosome6	325757594	C	1	,	9	0	*	*	1	,-4tcga	:	1	,-4tcga	5	0	*	*
-Chromosome6	325828243	T	1	C	J	1	.	F	0	*	*	2	GC	A7	2	C.	FJ
-Chromosome6	325828440	C	1	t	J	1	,	J	0	*	*	2	t,	FJ	2	t,	FJ
-Chromosome6	325828534	C	1	t	7	1	,	J	0	*	*	2	t,	;A	2	t,	7J
-Chromosome6	325950772	C	0	*	*	0	*	*	1	G	M	2	G,	es	1	,	J
-Chromosome6	325969297	T	1	,	J	0	*	*	1	*	5	2	*,	5J	0	*	*
-Chromosome6	325985574	T	0	*	*	1	,	J	1	,-4ttgc	5	1	,-4ttgc	5	0	*	*
-Chromosome6	326003306	G	1	A	j	1	.	J	0	*	*	2	a.	Jo	0	*	*
-Chromosome6	326195981	G	0	*	*	0	*	*	2	t,	JJ	2	,,	7J	1	t	J
-Chromosome6	326293749	A	2	T.	AJ	1	T	A	0	*	*	0	*	*	1	.	J
-Chromosome6	326293770	T	2	C.	7F	1	C	F	0	*	*	0	*	*	1	.	J
-Chromosome6	326293810	A	3	G..	<JF	1	G	A	0	*	*	0	*	*	1	.	J
-Chromosome6	326293831	G	2	.A	7J	1	A	A	0	*	*	0	*	*	1	.	J
-Chromosome6	326293833	G	2	.A	FJ	1	A	<	0	*	*	0	*	*	1	.	J
-Chromosome6	326293853	C	2	.T	<J	1	T	7	0	*	*	0	*	*	1	.	J
-Chromosome6	326363969	G	2	T.	sJ	1	.	A	0	*	*	1	T	J	0	*	*
-Chromosome6	326363996	G	2	.A	sJ	1	.	J	0	*	*	1	A	s	0	*	*
-Chromosome6	326364050	G	2	A,	JJ	1	a	J	0	*	*	1	.	s	0	*	*
-Chromosome6	326419318	A	0	*	*	1	.-1T	J	2	..-1T	AJ	0	*	*	2	.+1T,+1t	JJ
-Chromosome6	326419395	G	0	*	*	1	a	J	2	A,	sJ	0	*	*	1	,	J
-Chromosome6	326419437	T	0	*	*	1	a	J	2	,a	<J	0	*	*	1	,	J
-Chromosome6	326622262	T	1	.	<	0	*	*	0	*	*	1	.-2GC	J	2	.-2GC*	JJ
-Chromosome6	326639008	G	1	.	s	0	*	*	1	T	J	2	,T	Fs	0	*	*
-Chromosome6	326639042	T	2	..	so	0	*	*	1	G	J	3	,G.	JsJ	0	*	*
-Chromosome6	326639048	C	3	..,	sRF	0	*	*	1	T	J	3	,T.	FsJ	0	*	*
-Chromosome6	326639056	A	3	.gg	sJJ	0	*	*	1	G	J	3	,GG	Jss	1	,	A
-Chromosome6	326639058	C	3	.,,	sFJ	0	*	*	1	A	J	3	,A.	Jss	0	*	*
-Chromosome6	326639101	A	3	.gg	sJJ	0	*	*	0	*	*	3	,c.+6TGCCGC	JJW	1	,	7
-Chromosome6	326639102	C	3	.tt	sJJ	0	*	*	0	*	*	2	,a	JJ	1	,	A
-Chromosome6	326639103	A	3	.gg	sJJ	0	*	*	0	*	*	3	,tG	JJ5	1	,	A
-Chromosome6	326639111	G	3	.aa	sJJ	0	*	*	0	*	*	3	aa*	JJs	1	a	7
-Chromosome6	326639120	T	3	.cc	sJJ	0	*	*	0	*	*	2	cC	Js	1	,	J
-Chromosome6	326639143	A	3	tt,	JJJ	0	*	*	1	,	J	2	,T	Js	0	*	*
-Chromosome6	326639511	C	2	.T	JJ	0	*	*	1	T	J	2	..-6AAGAGT	JH	0	*	*
-Chromosome6	326639513	A	2	.G	JF	0	*	*	1	.	J	2	.*	JF	0	*	*
-Chromosome6	326639515	A	2	.G	FA	0	*	*	1	G	J	2	.*	JF	0	*	*
-Chromosome6	326639570	G	2	A,	`J	1	,	J	0	*	*	2	A,	oJ	0	*	*
-Chromosome6	326639610	A	3	,,c	JJJ	1	,	J	1	c	J	3	,,C	JJJ	0	*	*
-Chromosome6	326639617	A	3	,,g	JJJ	1	,	J	1	g	J	3	,,G	FJF	0	*	*
-Chromosome6	326639626	A	3	g,,	JJJ	1	g	J	1	,	J	3	,g.	JJj	0	*	*
-Chromosome6	326639632	T	3	,,g	JJJ	1	,	J	1	g	J	3	g,G	JJe	0	*	*
-Chromosome6	326639640	G	3	,,,-1c	JJJ	1	,	J	1	,-1c	J	3	,,.-1C	JJs	0	*	*
-Chromosome6	326639641	C	3	,,*	JJF	1	,	J	1	*	F	3	,,*	FJi	0	*	*
-Chromosome6	326639644	T	3	,gg	JJG	1	,	F	1	g	G	3	g,G	HJk	0	*	*
-Chromosome6	326639665	G	3	,,a	JJJ	1	,	F	0	*	*	3	,,A	JJR	0	*	*
-Chromosome6	326640356	T	1	A	F	0	*	*	0	*	*	1	.	F	2	A.	JJ
-Chromosome6	326640372	A	1	G	A	0	*	*	0	*	*	1	.	F	2	G.	J<
-Chromosome6	326640466	G	1	a	J	0	*	*	0	*	*	1	.	f	2	.a	VF
-Chromosome6	326640467	G	1	a	J	0	*	*	0	*	*	1	.	k	2	,a	>J
-Chromosome6	326640480	G	1	,	J	0	*	*	0	*	*	1	A	\	2	a,	JJ
-Chromosome6	326640504	G	1	,	A	0	*	*	0	*	*	1	,-1c	F	2	,-1c,	JJ
-Chromosome6	326640505	C	1	,	F	0	*	*	0	*	*	1	*	F	2	*,	FJ
-Chromosome6	326640506	G	1	a	J	0	*	*	0	*	*	1	,	F	2	,a	FJ
-Chromosome6	326640511	G	1	a	A	0	*	*	0	*	*	1	,	J	2	,c	FJ
-Chromosome6	326640554	T	1	g	J	0	*	*	0	*	*	1	,	A	2	,g	FJ
-Chromosome6	326836778	G	0	*	*	1	.-1A	o	0	*	*	1	.	s	1	.-1A	s
-Chromosome6	326841480	A	1	.	F	2	T.	sF	0	*	*	1	T	e	0	*	*
-Chromosome6	326841483	T	1	.	J	2	G.	sJ	0	*	*	1	G	a	0	*	*
-Chromosome6	326865317	G	1	a	J	1	,	7	2	.a	sF	0	*	*	0	*	*
-Chromosome6	326901772	C	1	,-1g	F	1	,-1g	A	0	*	*	1	,-1g	J	0	*	*
-Chromosome6	326929048	A	1	,-1t	J	2	..	e`	0	*	*	1	,-1t	J	0	*	*
-Chromosome6	327056837	C	2	.A	FJ	0	*	*	0	*	*	1	A	J	2	..	JJ
-Chromosome6	327103247	T	6	.....C	JJJ<JJ	5	....C	FJJJJ	6	C.C.CC	JFJJJJ	2	..	JJ	6	C..CC.	JJJ7JJ
-Chromosome6	327103250	T	6	..CC..	AJAAFJ	5	.CC..	AJJAJ	7	.C.....	JA<FAJJ	2	..	JJ	6	..C..C	JJJ7JF
-Chromosome6	327172455	C	0	*	*	1	.-7ACCCTAA	Q	2	,-7accctaa.	Uo	0	*	*	3	...	sss
-Chromosome6	327217144	C	3	.+2AT..	FJJ	0	*	*	3	.+2AT.+2AT.	JJJ	0	*	*	3	...	FFJ
-Chromosome6	327217526	C	2	,a	JF	1	.	o	3	aa,	JJJ	6	,aa,,,	JJJJJJ	6	a,aa,,	FJ<FJA
-Chromosome6	327338090	C	1	,-5aaaaa	F	0	*	*	0	*	*	1	,-5aaaaa	J	1	,	J
-Chromosome6	327621190	T	1	,-1a	J	1	,-1a	J	0	*	*	0	*	*	1	,-1a	J
-Chromosome6	327629090	T	3	.CC	FJ<	2	..	JJ	1	C	J	0	*	*	0	*	*
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-Chromosome6	327716468	C	0	*	*	2	T,	JJ	1	.	J	0	*	*	1	a	J
-Chromosome6	327716693	T	0	*	*	1	,-3tcc	;	1	,	J	0	*	*	1	,-3tcc	;
-Chromosome6	328009014	G	0	*	*	2	..	JJ	0	*	*	3	A..	JJJ	1	A	J
-Chromosome6	328105015	C	1	A	F	1	.	J	0	*	*	0	*	*	6	..A.A.	FFAJJJ
-Chromosome6	328137060	A	2	C.	=F	0	*	*	1	.	F	0	*	*	1	C	=
-Chromosome6	328137119	C	2	A.	J7	0	*	*	1	.	J	0	*	*	1	A	J
-Chromosome6	328137342	C	2	,t	AJ	0	*	*	1	,	J	0	*	*	1	t	J
-Chromosome6	328335218	T	0	*	*	1	.	7	2	.A	FJ	2	.A	`J	3	.AA	AJJ
-Chromosome6	328353632	C	0	*	*	0	*	*	1	,	J	1	g	J	2	g,	JJ
-Chromosome6	328353704	C	0	*	*	0	*	*	1	,	J	1	t	J	2	t,	JJ
-Chromosome6	328373415	C	0	*	*	1	.	s	0	*	*	1	,-4actt	8	2	,,-4actt	J8
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-Chromosome6	328452897	G	0	*	*	4	,,a,	JFJJ	1	,	F	0	*	*	1	a	A
-Chromosome6	328457467	C	2	T.	<J	0	*	*	3	...	JJF	0	*	*	2	.T	JJ
-Chromosome6	328457596	C	1	,	J	0	*	*	3	T,t	VFJ	0	*	*	2	,t	JJ
-Chromosome6	328489867	A	1	.	J	2	.C	J<	0	*	*	0	*	*	1	C	J
-Chromosome6	328489957	T	1	,	J	2	G,	VJ	0	*	*	0	*	*	1	G	s
-Chromosome6	328490182	T	0	*	*	3	CC.	kss	2	.C	ss	0	*	*	1	C	s
-Chromosome6	328491986	C	0	*	*	2	T.	J7	1	T	J	2	.T	JJ	0	*	*
-Chromosome6	328492093	G	0	*	*	2	C,	VJ	1	.	\	2	,c	JJ	0	*	*
-Chromosome6	328634771	G	0	*	*	1	a	J	2	,,	JJ	0	*	*	2	at	JJ
-Chromosome6	328711433	T	2	.C	FJ	3	..C	JJJ	5	CCC..	JJJ<A	3	..C	JJJ	5	C.C..	AJ7JJ
-Chromosome6	329244222	T	1	.	s	0	*	*	2	.C	js	0	*	*	2	.C	so
-Chromosome6	329275820	G	0	*	*	1	A	J	0	*	*	2	A.	Js	1	.	J
-Chromosome6	329275881	A	0	*	*	1	G	R	0	*	*	2	G.	Js	1	.	J
-Chromosome6	329443167	T	1	,-1g	J	1	,-1g	J	0	*	*	1	,-1g	J	1	,-1g	J
-Chromosome6	330065156	A	0	*	*	0	*	*	4	GGG.	ssss	2	GG	ss	3	GG.	ssV
-Chromosome6	330065197	C	0	*	*	0	*	*	4	,,,,	JJJJ	2	t,	JJ	3	.t,	oJJ
-Chromosome6	330146508	T	0	*	*	0	*	*	1	.-1A	J	1	.-1A	J	2	.-1A,	JA
-Chromosome6	330148047	C	0	*	*	1	.-4CAAG	5	0	*	*	1	.-4CAAG	5	1	.-4CAAG	5
-Chromosome6	330157521	C	2	.A	JJ	0	*	*	0	*	*	1	A	J	1	.	J
-Chromosome6	330157565	A	2	.C	JJ	0	*	*	0	*	*	1	C	J	1	.	J
-Chromosome6	330157644	C	2	t,	JA	0	*	*	0	*	*	1	,	F	1	t	J
-Chromosome6	330170206	A	1	.	J	0	*	*	3	C..	JJJ	0	*	*	4	..C.	JJJJ
-Chromosome6	330170269	A	1	.	s	0	*	*	3	..T	kss	0	*	*	4	.T..	soso
-Chromosome6	330170278	G	1	.	s	0	*	*	3	..T	Wss	0	*	*	4	.T.T	osss
-Chromosome6	330170302	A	1	.	s	0	*	*	3	..C	\ss	0	*	*	4	.C..	sVss
-Chromosome6	330170356	C	1	,	J	0	*	*	3	,,t	JJJ	0	*	*	4	t,,,	JJJJ
-Chromosome6	330384311	T	0	*	*	1	G	J	1	.	F	0	*	*	2	.G	JJ
-Chromosome6	330401519	A	0	*	*	0	*	*	1	,	F	1	,-1g	J	2	,-1g,	FJ
-Chromosome6	330594325	A	0	*	*	0	*	*	1	.	J	1	T	J	1	.-1T	J
-Chromosome6	330612901	G	1	,	J	1	a	J	0	*	*	0	*	*	2	,c	<J
-Chromosome6	330719831	C	0	*	*	0	*	*	1	,	F	1	t	G	3	,,t	JJG
-Chromosome6	330941444	A	0	*	*	1	G	s	1	.	A	0	*	*	2	.G	JJ
-Chromosome6	330941467	C	0	*	*	1	,-3ggg	J	1	.	o	0	*	*	2	.,-3ggg	sJ
-Chromosome6	330976374	G	0	*	*	0	*	*	1	A	J	2	A.	JJ	2	A.	JJ
-Chromosome6	330976393	C	0	*	*	0	*	*	2	T.	ss	2	T.	ss	2	T.	Ws
-Chromosome6	331044373	A	0	*	*	1	,-1t	J	1	,	J	1	.-1T	s	0	*	*
-Chromosome6	331122875	A	3	,,g	JFJ	1	t	J	5	,,t,,	JJJJJ	6	,,,,,,	JJJJJJ	4	,tg,	JJJJ
-Chromosome6	331259115	C	0	*	*	0	*	*	2	t,	JJ	1	,	J	1	t	J
-Chromosome6	331337214	G	1	.-3CGC	<	1	,-3cgc	J	1	.-3CGC	J	0	*	*	0	*	*
-Chromosome6	331337568	C	0	*	*	0	*	*	1	,-16agagagaggttgtgcg	<	1	,	H	1	,-2ag	J
-Chromosome6	331415541	G	2	,t	7J	1	,	J	0	*	*	1	t	F	0	*	*
-Chromosome6	331570447	G	2	A.	JF	2	..	Js	0	*	*	0	*	*	1	A	J
-Chromosome6	331570531	G	2	T.	AJ	2	T.	Js	1	.	s	0	*	*	1	T	J
-Chromosome6	331810294	C	0	*	*	2	G.	JJ	1	G	J	0	*	*	3	...	JJs
-Chromosome6	331810295	A	0	*	*	2	T.	JJ	1	T	F	0	*	*	3	T..	JJs
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-Chromosome6	338443637	A	1	T	F	2	..	FJ	0	*	*	3	.TT	s<J	0	*	*
-Chromosome6	338443638	G	1	A	F	2	..	JJ	0	*	*	3	.AA	oAJ	0	*	*
-Chromosome6	338443773	C	1	t	J	2	,,	JJ	0	*	*	2	,t	A7	0	*	*
-Chromosome6	338478534	A	1	,-7tactccg	5	0	*	*	1	.	R	1	,-7tactccg	5	0	*	*
-Chromosome6	338690117	A	0	*	*	1	G	o	2	.T	sf	2	.,	sF	0	*	*
-Chromosome6	338728323	A	0	*	*	0	*	*	1	,-5accat	7	1	,	J	1	,-5accat	7
-Chromosome6	338841745	C	1	,	F	2	tt	JF	0	*	*	0	*	*	2	,t	JJ
-Chromosome6	338877342	G	2	A.	JJ	1	A	J	1	.	s	0	*	*	0	*	*
-Chromosome6	338922353	G	1	A	J	1	.	J	0	*	*	0	*	*	2	,A	VF
-Chromosome6	338922403	A	1	G	J	1	.	J	0	*	*	0	*	*	2	,G	sJ
-Chromosome6	338922404	A	1	G	J	1	.	J	0	*	*	0	*	*	2	,G	s<
-Chromosome6	338922409	C	1	T	J	1	.	J	0	*	*	0	*	*	2	,T	sA
-Chromosome6	338922419	T	1	C	J	1	.	F	0	*	*	0	*	*	2	,C	sJ
-Chromosome6	338922458	C	1	T	J	1	.	F	0	*	*	0	*	*	2	,T	sF
-Chromosome6	338922468	T	1	C	J	1	.	J	0	*	*	0	*	*	2	,C	sF
-Chromosome6	339125585	A	1	G	J	0	*	*	3	...	JAJ	0	*	*	2	G.	FJ
-Chromosome6	339125610	C	1	T	J	0	*	*	2	T.	FJ	0	*	*	2	T.	FF
-Chromosome6	339125899	C	1	,+1t	D	0	*	*	3	,+1t,+1t,+1g	FJ7	0	*	*	2	,+1t,+1t	J?
-Chromosome6	339207688	T	3	,,c	JJJ	0	*	*	1	c	J	7	c,,cccc	AJJJJAJ	2	,c	JJ
-Chromosome6	339207753	C	1	g	F	0	*	*	0	*	*	3	,g,	FFF	1	,	<
-Chromosome6	339212206	G	1	,	J	0	*	*	1	t	J	2	,a	JJ	0	*	*
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-Chromosome6	339505953	A	1	c	J	2	C,	sJ	2	C,	sJ	0	*	*	4	,,,,	JJJJ
-Chromosome6	339584024	A	1	t	<	0	*	*	0	*	*	1	,	J	2	,t	JA
-Chromosome6	339597434	A	0	*	*	1	.	J	0	*	*	1	G	F	2	TG	MJ
-Chromosome6	339662065	A	0	*	*	0	*	*	2	.-1G.	Rs	1	.-1G	s	1	.-1G	s
-Chromosome6	339662097	T	0	*	*	0	*	*	3	cc.	FFF	1	c	J	1	a	J
-Chromosome6	339662135	G	0	*	*	0	*	*	2	,-1a.	<F	1	,-1a	J	1	,-1a	J
-Chromosome6	339682090	A	1	,	J	0	*	*	1	,-1g	J	0	*	*	1	,-1g	<
-Chromosome6	339783959	G	5	.AAAA	JJJJJ	2	.A	JJ	3	.A.	JFJ	4	A.AA	JJJJ	4	.AAA	JFJJ
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-Chromosome6	340003968	T	1	.-1C	J	0	*	*	1	.-1C	J	1	.-1C	J	1	.-1C	J
-Chromosome6	340050363	T	1	,+1c	J	0	*	*	4	,+1c,+1c,+1c,+1c	JJJJ	0	*	*	3	,+1c,+1c,+1c	JDJ
-Chromosome6	340186332	G	1	.-1T	J	0	*	*	1	.	J	0	*	*	2	.-1T.-1T	JJ
-Chromosome6	340419693	C	50	.-1T.-4TTTT.-2TT.-3TTT.-1T..-3TTT.-4TTTT...-3TTT..-3TTT..-3TTT.-2TT.-4TTTT.-3TTT.-3TTT.-2TT.-4TTTT.-3TTT...-2TT.-2TT.-3TTT..-3TTT..-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-2TT.-3TTT.-4TTTT.-1T.-3TTT.-3TTT.-2TT.-3TTT,-3ttt.-1T..-4TTTT.-3TTTt	ssJso\soaVsMsjofssssssWJoVo7okVooVsssojMosCssosss:	107	.-3TTT..-3TTT..-4TTTT.-2TT...+1T.-3TTT.-4TTTT..-3TTT.-2TT.-3TTT.-3TTT.-3TTT.-4TTTT.-3TTT.-3TTT.-3TTT.-5TTTTT.-4TTTT.-3TTT..-2TT..-3TTT.-3TTT..+1T.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-3TTT..-3TTT.-4TTTT.-3TTT.-2TT.-2TT.-3TTT.-3TTT..-3TTT..-4TTTT.-4TTTT...-4TTTT..-3TTT.-3TTT..-3TTT.-3TTT.-2TT.-4TTTT...-4TTTT.-3TTT..-1T....-3TTT..-3TTT.-5TTTTT.-3TTT.-3TTT.-4TTTT.-3TTT..-3TTT...-3TTT.-2TT,..-3TTT.-3TTT.-3TTT.-3TTT.-3TTT,.-1T.-1T.-3TTT.-1T.-3TTT.-3TTT.-3TTT,-3ttt.-3TTT.-1T.-3TTT.-3TTT.-3TTT.-3TTT	o`jVsVsWo`jskWsssssoesse`fVojMsfaef`jVsVossojsWsosssRkRRMCsM\sk\sosokHRsjJaeossjoVsaj`Vasoosfjjoossssjsssso	156	.-3TTT,-3ttt.-4TTTT.-4TTTT.-2TT.-3TTT.-3TTT.-1T.-3TTT..-7TTTTTTT..-3TTT..-3TTT.-3TTT..-3TTT....-3TTT.-3TTT..-3TTT...-3TTT.-2TT..-2TT..-3TTT.-3TTT..-3TTT.-3TTT.-3TTT.-3TTT.-4TTTT.-4TTTT.-3TTT..-3TTT.-3TTT..-3TTT.+1T..-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-2TT.-2TT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-2TT.-3TTT.+1T.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT...-1T..-3TTT.-3TTT..-3TTT.-3TTT.-3TTT.-4TTTT.+1T.-2TT.-3TTT.-3TTT..-3TTT..-3TTT.-3TTT.-3TTT..-3TTT.-2TT.-3TTT.-2TT.-1T.-2TT.-3TTT.-3TTT.-3TTT.-4TTTT.-2TT..-2TT.-3TTT.-3TTT.-3TTT..-3TTT.-5TTTTT..-3TTT.-3TTT..-3TTT.-3TTT..-4TTTT.-3TTT.-1T..-1T.-3TTT..-3TTT.-3TTT.-3TTT.-3TTT.-4TTTT.-3TTT.-4TTTT,-3ttt..-2TT.-3TTT.-3TTT......,-3ttt.-3TTT,-3ttt.-3TTT,.-3TTT.-4TTTT	osjjasRVsesVs<o\osfVfjsssJVVs9essR9sosVsfokVsfaVokosssooe>ssjjss\osVeoMkaoso9s\sVoe<CfssjsVMe`VsssjjsFessfsRkosafsooRskkeasVMeWfeoesjoosfssRVossoVseMsefoAsJ	173	.+1T..-3TTT.-3TTT..-3TTT.-4TTTT.-3TTT.-2TT.-3TTT.+1T.+1T..-4TTTT.-4TTTT.-3TTT..-3TTT..-3TTT.-3TTT.-3TTT..-1T.-4TTTT.-3TTT..-3TTT.-3TTT.-3TTT.-1T.-3TTT..-3TTT.-3TTT.-3TTT.-3TTT.-4TTTT.-3TTT.+1T.-3TTT.-4TTTT..-2TT.-3TTT.-3TTT.-3TTT...-3TTT.-3TTT..-3TTT..-3TTT.-3TTT.-3TTT..-3TTT.-3TTT..-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-3TTT.-1T.-3TTT.-2TT..-3TTT.-3TTT.-3TTT..-4TTTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-4TTTT.-4TTTT.-3TTT.-4TTTT..-3TTT..-4TTTT.-3TTT.-3TTT.-1T.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-3TTT.-3TTT..-3TTT.-3TTT.-5TTTTT.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT.-3TTT...-2TT.-3TTT.-2TT.-1T.-3TTT.-3TTT.-3TTT.-3TTT.-3TTT.-2TT..-3TTT...-3TTT.-4TTTT.-3TTT.-3TTT..-3TTT.-3TTT.-3TTT.-2TT.-4TTTT..-1T..-3TTT.-3TTT.-4TTTT...-3TTT..-3TTT.-3TTT.-3TTT.,-1t..-3TTT..-3TTT.-3TTT.-3TTT.-3TTT,-3ttt.-3TTT..-3TTT....-3TTT.+1T,-4tttt.,	s\\jf\oRVjssoRssosjosJaFss>joseoVjoooosossojjeoMoo`e`JasssosCfjsssssofsesoofooRsoss`sssseosoosRsoFosjokWesssoVoojRssCs`jjfseoe9oRssjRVsejssssRssesR\oMosJsHskjoJs:sAsJooJooss	110	,-3ttt,.-3TTT..-4TTTT.-3TTT.-3TTT..-1T.-3TTT..+1T.-5TTTTT.-3TTT.-3TTT.-3TTT.-3TTT...-3TTT.-3TTT...-3TTT.-3TTT.-3TTT.-3TTT..-3TTT..-3TTT.-3TTT.-2TT.-3TTT.-3TTT..-2TT..-3TTT.-2TT..-4TTTT.-3TTT.-5TTTTT..-7TTTTTTT.-3TTT.-1T.-3TTT.-3TTT.-3TTT.+1T.-3TTT.-5TTTTT.-3TTT.-3TTT.-3TTT.-3TTT..-3TTT..-1T.-3TTT.-3TTT.-3TTT....-4TTTT.-3TTT.-3TTT.-2TT....-3TTT.-3TTT.-1T..-4TTTT.-3TTT.-3TTT..-5TTTTT.-3TTT.-4TTTT.-3TTT.-3TTT.-3TTT...-1T.-1T.-3TTT.-3TTT.-2TT..-1T.-2TT..-3TTT..-1T.-3TTT.-3TTT.-3TTT.,-3ttt.-3TTT.-3TTT	ssoo`ssHsVCsseks\FsaooMsssskesss`jfRsaossjJsesskofFVfsaos\VVfsojsV\VRsssJojsjHjsssssssssVe9joJsjVsskssoesVsosa
-Chromosome6	340419708	T	53	.......................*....$..................,....,,	95879e75oo7o7o77577757`Q77757o77777=77759777`779s577>	106	................................................*...................................,......,.......,......	7s7s57so975s777775777557V7e77V97777e77s7577777R7\55sj5o77V7775o57s9jjj7o=57757o7ss77js77777`99797777797777	147	.,..........................................*.....................................................................................,.........,.,.,.,	775557797ss777j7jes77s7777s77R7777V557o77s79J777777776777777V7779777777Ws9s77s77659777R777j777?9777757s7777o7s77s77s579s67s77775757777ssssso7777A7:	167	...........................................................................................................................................$...........,.............,.,	7s77o7577799s557o7s67@?57j77796`777757975s7777Vs77s7777j777777j77977s777s5777775575s7o57797777j777s77577777o77fs7779777777s6oe7577s77775s9K775so7j777V97o77777s7ss=95ss	102	,,..............................................................*..................................,..	7s7s57797f957777s77s7777o7s7777777s575j7977=9757777s7e9777Vs5777Vso779s577o575777VV99=77o97s7s9777s777
-Chromosome6	340419709	A	51	......................*.....................,...,.,	osCojosooVojVo`sssfosjQsesssjjossMssVs\osVHssoos>sJ	107	...............................................$.*...................................,......,.......,.,.....	oMsMsossoojosesoessojsss`oVoe\ejsoaeVVjookooos\s\ojRsfooo\jVaofjjVss`aoosooossVjVoVCPk`oVosoVjooseossAjsssj	157	.,..........................................*.....................................................................................,.,........,.,,,.,,,,..,,,,	VosVossoesosoosfjojsessVVoVje`sssjVshoojkeojJessosess\oeksVsjssjVhWjossofjHsjsojkRoeosRjessssssWeosjssejsjjskssosesoV``joVjeosssoeAssVjeoojsfssj7AsAAAFs9JFJA	173	.........................$.......................................................................................................,...................,......,,,,.......,.,,,,,	oMfjs`VVjojjKoooj`_sHess`osoeV\sRssssjsoojs`s\ejeVs\sssjVsjosjssoojossssosHoossResseesesVsjooCsoeVsHssssjloVoMVjesaoossojMRo`ssVAjfsjsssjesskjV\oWssesoss\sAFAFossosossosJJAJ	112	,,...............................................................*.................................,.,,,,,,,,.,,	sVeojsosjaeo`sjRjosejjoeVjoksSsooVsejRoRsssookfssfosVfjjsRsVVssssVVosjaossVeVVssoR`fosVsoejjoosjsoosoJFAJFJ>:oA<
-Chromosome6	340503267	C	0	*	*	0	*	*	2	T,	JJ	4	,,,,	JAJJ	1	T	J
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-Chromosome6	343577469	C	2	,t	JJ	0	*	*	1	t	J	0	*	*	2	,,	JJ
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-Chromosome6	351677794	A	3	,,,	JJJ	6	.,,,tt	`JJFJJ	2	,t	J;	7	,,tt..T	JJJJ\os	4	.t,,	fJJJ
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-Chromosome6	351797023	C	1	a	J	2	.,	sJ	1	t	J	0	*	*	4	,,,t	JJJJ
-Chromosome6	352014222	C	1	.-1G	J	0	*	*	2	.-1G.-1G	<J	1	.-1G	J	0	*	*
-Chromosome6	352021263	G	0	*	*	1	.	A	3	.A.	JJJ	0	*	*	2	A.	AA
-Chromosome6	352129879	C	2	,,	JJ	4	aa,,	JAFJ	10	,,a,,,,,,,	JJ7JJJFFJJ	4	a,a,	JJJJ	6	,aa,,a	JJJJJJ
-Chromosome6	352235063	T	1	.	J	0	*	*	5	G.G..	JJJsk	0	*	*	2	G.	Js
-Chromosome6	352329904	A	0	*	*	2	.-1T.-1T	JJ	1	.-1T	J	0	*	*	1	.	F
-Chromosome6	352413756	C	0	*	*	2	.T	JJ	1	.	J	2	.T	JJ	0	*	*
-Chromosome6	352413792	T	0	*	*	2	.C	JJ	1	.	J	2	.C	JJ	0	*	*
-Chromosome6	352413880	C	0	*	*	1	.	j	1	A	J	3	A..	JJJ	0	*	*
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-Chromosome6	352431856	G	1	,	J	2	A.	ss	0	*	*	1	a	J	0	*	*
-Chromosome6	352533646	T	1	A	J	1	.	s	2	A.	JF	0	*	*	0	*	*
-Chromosome6	352671190	A	1	.-1G	J	0	*	*	0	*	*	1	.-1G	J	2	.-1G.-1G	JJ
-Chromosome6	352671252	G	1	A	F	0	*	*	0	*	*	1	.	J	2	.A	JJ
-Chromosome6	352697935	C	1	A	J	1	.	V	0	*	*	2	.T	AF	0	*	*
-Chromosome6	352712463	C	2	.T	JJ	0	*	*	1	.	o	0	*	*	1	A	I
-Chromosome6	352850743	G	0	*	*	0	*	*	1	A	J	1	.	J	2	A.	JJ
-Chromosome6	353161086	G	5	T..T.	JJJJs	5	T..T.	JJJJJ	14	T......T...TT.	JJJJJJJJJJJAJs	11	TT...TT....	aJs<JJAJJJJ	12	...T...T....	JFJJJFJJJJJJ
-Chromosome6	353161194	C	5	,a,,a	FJJJJ	5	.a,,a	s<FJJ	14	.a,,,,,,a,,,aa	oJJJJJJAJJJJJJ	11	.,a.a,,aa,,	sJFsJJJJAJJ	12	,,,a,,,a,,,,	JJJJJFJJJJJF
-Chromosome6	353161206	C	5	,,tt,	FJJJJ	5	.$,,,,	jJAJJ	14	.t,,,,,,,,,,,,	fJJJJFJFJJJFJJ	11	.,,.,,,ta,,	sFJoFJJJJJJ	12	,,,,,,,t,,,,	JJJJJAJJJJJA
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-Chromosome6	353227340	C	0	*	*	0	*	*	2	.t	sJ	1	t	J	2	,,	JF
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-Chromosome6	353535493	C	2	T.	Jo	0	*	*	1	T	J	0	*	*	1	.	j
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-Chromosome6	353535561	G	2	,-2ta,	JJ	0	*	*	1	,	J	0	*	*	1	,-2ta	J
-Chromosome6	353535568	G	2	,,-10tcttgtatac	JJ	0	*	*	1	,-10tcttgtatac	J	0	*	*	1	,	J
-Chromosome6	353535615	C	2	t,	JJ	0	*	*	1	,	J	0	*	*	1	t	J
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-Chromosome6	354219838	G	2	A.	so	0	*	*	0	*	*	1	.$	E	1	A	s
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-Chromosome6	354248907	C	1	G	A	0	*	*	1	.	J	0	*	*	2	.G	FF
-Chromosome6	354248959	C	1	A	<	0	*	*	1	.	J	0	*	*	2	.A	7J
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-Chromosome6	354514600	A	1	.-1T	@	0	*	*	0	*	*	1	.	J	1	.-1T	@
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-Chromosome6	354588747	A	4	.C.C	JJ7J	2	C.	JJ	3	C.C	J<J	2	C.	JJ	3	.C.	JJJ
-Chromosome6	354595416	C	0	*	*	0	*	*	2	G.	so	2	G.	jf	3	...	sjM
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-Chromosome7	8501745	A	1	.-10CCATGACAAC	;	1	.-10CCATGACAAC	H	1	.-10CCATGACAAC	H	0	*	*	0	*	*
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-Chromosome7	29090321	C	0	*	*	1	.-1T	s	1	,	J	0	*	*	1	,-1t	F
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-Chromosome7	29320882	A	0	*	*	1	g	J	3	,g,	JJJ	0	*	*	1	.	s
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-Chromosome7	29331941	T	2	c,	JJ	0	*	*	0	*	*	1	,	J	1	c	J
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-Chromosome7	29460667	A	3	g,,	JJJ	0	*	*	0	*	*	1	,	F	3	,,c	J<J
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-Chromosome7	29806572	T	0	*	*	2	.C	JJ	2	CC	JJ	0	*	*	1	.	J
-Chromosome7	29806577	A	0	*	*	2	T.	JJ	2	..	sJ	0	*	*	1	T	J
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-Chromosome7	31148720	C	1	T	A	1	.	J	0	*	*	0	*	*	2	.T	JJ
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-Chromosome7	36265448	G	1	A	J	1	.	J	0	*	*	0	*	*	2	.A	JF
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-Chromosome7	38607353	G	0	*	*	1	,	J	2	.a	sF	2	A,	JJ	0	*	*
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-Chromosome7	38645550	A	0	*	*	0	*	*	1	.-2TT	J	2	G.-2TT	FJ	2	.-2TT.-2TT	JJ
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-Chromosome7	60284261	G	1	.-5GAGAA	6	1	.-5GAGAA	Q	0	*	*	1	.	o	0	*	*
-Chromosome7	60285770	G	2	t,	JJ	3	.Tt	ssJ	0	*	*	0	*	*	2	,,	FJ
-Chromosome7	60285778	A	2	g,	>7	2	.G	RF	0	*	*	0	*	*	1	,	J
-Chromosome7	60285829	T	2	c,	FF	3	cc,	JJJ	0	*	*	0	*	*	1	,	J
-Chromosome7	60285832	T	2	a,	FJ	3	aa,	JJJ	0	*	*	0	*	*	1	,	J
-Chromosome7	60311329	T	1	,	J	0	*	*	2	,c	JJ	0	*	*	1	c	J
-Chromosome7	60398289	G	2	CA	AJ	0	*	*	0	*	*	2	A.	FJ	1	a	J
-Chromosome7	60468541	G	1	.	F	0	*	*	1	A	J	3	..A	JJs	0	*	*
-Chromosome7	60487432	A	4	...G	JJFF	1	.	J	1	G	J	0	*	*	3	..G	JJJ
-Chromosome7	60487436	G	4	...C	JJFJ	1	.	J	1	C	J	0	*	*	3	..C	FJJ
-Chromosome7	60487440	C	3	..A	FFJ	1	.	J	1	A	J	0	*	*	3	..A	AJJ
-Chromosome7	60487459	G	4	.$..T	EFJA	1	.	J	1	T	J	0	*	*	3	..T	JJJ
-Chromosome7	60489473	A	1	G	J	1	.	F	0	*	*	2	G.	Js	0	*	*
-Chromosome7	60489490	C	1	G	J	1	.	J	0	*	*	2	G.	Js	0	*	*
-Chromosome7	60489497	C	1	.	J	1	T	J	0	*	*	2	T.	Js	0	*	*
-Chromosome7	60558843	C	2	T.	JJ	0	*	*	2	..	JJ	0	*	*	1	T	J
-Chromosome7	60558875	T	2	A.	JJ	0	*	*	2	..	JA	0	*	*	1	A	J
-Chromosome7	60558894	C	2	T.	FJ	0	*	*	2	..	JJ	0	*	*	1	T	J
-Chromosome7	60715229	T	0	*	*	0	*	*	2	.C	JF	1	.	J	1	C	A
-Chromosome7	60715246	G	0	*	*	0	*	*	2	.T	FF	1	.	J	1	T	A
-Chromosome7	60715352	A	0	*	*	0	*	*	2	t,	JJ	1	t	J	1	,	A
-Chromosome7	60715418	T	0	*	*	0	*	*	2	c,	JJ	1	c	J	1	,	J
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-Chromosome7	60922478	C	0	*	*	1	T	o	2	T.	FF	0	*	*	1	.	s
-Chromosome7	60922482	C	0	*	*	1	T	o	2	T.	FA	0	*	*	1	.	s
-Chromosome7	60932252	C	0	*	*	1	,+1g	H	0	*	*	2	,t	JJ	2	.+1G,+1g	HH
-Chromosome7	60933892	T	0	*	*	1	.-1G	i	0	*	*	1	.	s	1	.-1G	U
-Chromosome7	60933897	C	0	*	*	1	.-1A	s	0	*	*	1	.	s	1	.-1A	f
-Chromosome7	60934898	A	0	*	*	1	.	o	1	.-7TCTAGAG	9	0	*	*	1	.-7TCTAGAG	9
-Chromosome7	60934940	C	0	*	*	1	.	j	2	T.	ss	0	*	*	1	T	`
-Chromosome7	60935022	T	0	*	*	1	,	J	2	.c	sJ	0	*	*	1	c	J
-Chromosome7	60959280	C	1	.	s	0	*	*	2	.T	ss	3	..T	sos	0	*	*
-Chromosome7	60959323	T	1	.	s	0	*	*	2	Cc	`J	3	..C	oo`	0	*	*
-Chromosome7	60959405	A	1	,	J	0	*	*	1	g	J	3	,gg	JJJ	0	*	*
-Chromosome7	61035869	T	0	*	*	1	,-1c	J	1	,-1c	J	1	,-1c	J	1	,-1c	J
-Chromosome7	61187439	A	2	gg	JJ	0	*	*	2	g.	A^	1	.	<	0	*	*
-Chromosome7	61187445	A	2	tt	JJ	0	*	*	2	t.	Js	1	.	<	0	*	*
-Chromosome7	61187447	G	3	aa,	AJA	0	*	*	2	a.	Js	1	.	F	0	*	*
-Chromosome7	61187448	A	2	gg	FJ	0	*	*	2	g.	Js	1	.	7	0	*	*
-Chromosome7	61187475	A	3	ttg	FJ<	0	*	*	2	tG	Js	1	G	A	0	*	*
-Chromosome7	61187477	G	2	aa	7J	0	*	*	2	a.	Js	1	.	7	0	*	*
-Chromosome7	61198208	C	0	*	*	0	*	*	1	A	J	1	.	J	3	..A	JJJ
-Chromosome7	61198320	C	0	*	*	0	*	*	1	t	J	1	,	J	3	t,t	JJJ
-Chromosome7	61198385	T	0	*	*	0	*	*	1	,	J	1	c	F	2	c,	JJ
-Chromosome7	61211642	G	0	*	*	0	*	*	2	.C	JJ	1	.	J	3	CAA	JJF
-Chromosome7	61211741	C	0	*	*	0	*	*	2	.T	sJ	2	.T	Js	3	...	JAF
-Chromosome7	61217709	A	1	,-4cgcg	J	1	.-4CGCG	R	0	*	*	0	*	*	1	.-4CGCG	o
-Chromosome7	61425181	A	1	.	J	1	.-3TAC	5	1	.-3TAC	9	0	*	*	0	*	*
-Chromosome7	61541673	T	0	*	*	2	c,	JJ	2	,,	JJ	1	c	J	0	*	*
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-Chromosome7	61544422	G	2	TA	JJ	0	*	*	0	*	*	1	T	J	1	.	J
-Chromosome7	61544427	G	2	A.	JJ	0	*	*	0	*	*	1	A	J	1	.	J
-Chromosome7	61544460	C	2	T.	JJ	0	*	*	0	*	*	1	T	J	1	.	J
-Chromosome7	61544523	C	2	T.	JJ	0	*	*	0	*	*	1	T	J	1	.	F
-Chromosome7	61544665	T	2	,c	JJ	0	*	*	0	*	*	1	c	J	1	,	J
-Chromosome7	61582251	T	2	GA	7J	1	G	J	0	*	*	0	*	*	1	A	F
-Chromosome7	61950904	C	0	*	*	0	*	*	3	.T.	FAJ	3	T..	JJJ	1	.	J
-Chromosome7	62064146	C	0	*	*	1	.-1A	F	0	*	*	1	.-1A	F	1	.-1A	F
-Chromosome7	62084313	G	1	.	J	0	*	*	3	TT.	<JJ	1	A	J	0	*	*
-Chromosome7	62118911	C	0	*	*	2	.t	oF	1	,	F	1	T	j	0	*	*
-Chromosome7	62118989	C	0	*	*	2	t,	FJ	1	t	J	1	.	o	0	*	*
-Chromosome7	62124073	G	1	.-6TTATTT	s	0	*	*	1	.	s	0	*	*	2	.-6TTATTT.-6TTATTT	sj
-Chromosome7	62124109	A	1	.-1G	i	0	*	*	1	,-1g	E	0	*	*	2	,-1g,-1g	EE
-Chromosome7	62126051	T	0	*	*	1	c	J	1	,	J	0	*	*	2	C,	sJ
-Chromosome7	62190880	C	0	*	*	1	T	s	0	*	*	3	,t,	JJJ	1	.	s
-Chromosome7	62197790	G	1	,	J	0	*	*	1	A	<	0	*	*	3	aa,	FJJ
-Chromosome7	62197792	G	1	a	J	0	*	*	1	.	I	0	*	*	3	,,a	JJJ
-Chromosome7	62197794	C	1	t	J	0	*	*	1	G	A	0	*	*	3	ggt	JJF
-Chromosome7	62197809	T	1	,	J	0	*	*	1	.-1C	J	0	*	*	3	,-1c,-1c,	JJJ
-Chromosome7	62197818	C	1	,	J	0	*	*	1	G	7	0	*	*	3	gg,	JJJ
-Chromosome7	62197891	C	1	t	J	0	*	*	1	.	\	0	*	*	3	gg,	JJJ
-Chromosome7	62221283	T	3	,ac	FJ7	5	,,a,,	FJJJ<	1	,	J	7	ac,,,ca	JJJJE7J	2	cg	AJ
-Chromosome7	62222733	G	2	,a	FJ	1	a	7	0	*	*	3	.aa	sJ7	0	*	*
-Chromosome7	62222750	T	1	,	J	1	c	J	0	*	*	3	Cc,	sJF	0	*	*
-Chromosome7	62223511	T	3	,.,	FAJ	2	,c	JJ	1	c	<	2	c.	FJ	2	.c	J@
-Chromosome7	62232969	T	2	,g	J7	0	*	*	1	g	A	1	a	F	0	*	*
-Chromosome7	62232976	C	2	t,	JA	0	*	*	2	aa	F<	1	,	J	0	*	*
-Chromosome7	62420808	T	0	*	*	0	*	*	1	,	J	1	.-1C	s	1	.-1C	V
-Chromosome7	62500065	G	0	*	*	1	A	s	2	a,	JJ	0	*	*	1	,	J
-Chromosome7	62500074	C	0	*	*	1	G	o	2	g,	FJ	0	*	*	1	,	J
-Chromosome7	62500085	T	0	*	*	1	C	s	2	c,	JJ	0	*	*	1	,	J
-Chromosome7	62500089	A	0	*	*	1	G	o	2	g,	JJ	0	*	*	1	,	F
-Chromosome7	62500098	T	0	*	*	1	G	e	2	g,	FJ	0	*	*	1	,	J
-Chromosome7	62500105	C	0	*	*	1	T	j	2	t,	JJ	0	*	*	1	,	F
-Chromosome7	62500116	A	0	*	*	1	T	s	2	t,	JJ	0	*	*	1	,	J
-Chromosome7	62500123	A	0	*	*	1	G	O	2	g,	FJ	0	*	*	1	,	J
-Chromosome7	62500163	G	0	*	*	1	a	J	2	a,	FJ	0	*	*	1	,	J
-Chromosome7	62752526	G	3	c,,	JJF	4	,,,,	JJFJ	4	,,c,	JFJJ	2	cc	JJ	4	,,,c	JJJJ
-Chromosome7	62986765	A	0	*	*	0	*	*	2	.-1T.	=F	2	..	FF	1	.-1T	=
-Chromosome7	62986778	C	0	*	*	0	*	*	2	.G	JJ	2	GG	JJ	1	.	J
-Chromosome7	62986791	G	0	*	*	0	*	*	2	.T	JZ	2	TT	ZZ	1	.	J
-Chromosome7	62986823	C	0	*	*	0	*	*	2	AT	Js	2	TT	ss	1	A	J
-Chromosome7	62986871	G	0	*	*	0	*	*	2	.A	ss	2	AA	os	1	.	`
-Chromosome7	62986886	C	0	*	*	0	*	*	2	G.	ss	2	..	ss	1	G	e
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-Chromosome7	63078621	T	1	.-1C	J	0	*	*	2	..-1C	JJ	0	*	*	3	...	JAJ
-Chromosome7	63078636	C	1	T	J	0	*	*	2	.T	JJ	0	*	*	3	...	AFF
-Chromosome7	63078645	C	1	A	J	0	*	*	2	.A	JJ	0	*	*	3	...	AAJ
-Chromosome7	63078907	A	1	g	J	0	*	*	2	,g	FJ	0	*	*	1	,	J
-Chromosome7	63078908	A	1	t	J	0	*	*	2	,t	JJ	0	*	*	2	,,	FJ
-Chromosome7	63078910	G	1	t	J	0	*	*	2	,t	JJ	0	*	*	2	,,	JJ
-Chromosome7	63119079	G	1	.	s	0	*	*	0	*	*	1	,-2ac	7	1	,-2ac	J
-Chromosome7	63152336	G	0	*	*	1	.	s	2	,-2tt,-2tt	HJ	1	.-2TT	s	0	*	*
-Chromosome7	63152352	G	0	*	*	1	.-1A	s	1	,-1a	J	1	.-1A	s	0	*	*
-Chromosome7	63211591	A	2	g,	JJ	0	*	*	1	.	s	2	.t	sF	1	g	J
-Chromosome7	63342428	C	6	.T....	JJJFJJ	3	.TT	AFF	4	T...	JJJJ	1	.	J	4	TT.T	A<JJ
-Chromosome7	63660492	C	1	.	J	1	T	J	0	*	*	2	.t	Fs	0	*	*
-Chromosome7	63812982	C	0	*	*	1	T	J	2	..	JJ	0	*	*	2	.T	JJ
-Chromosome7	63813010	T	0	*	*	1	G	J	2	..	FF	0	*	*	2	.G	JJ
-Chromosome7	63813011	A	0	*	*	1	G	J	2	.C	JJ	0	*	*	2	CG	JJ
-Chromosome7	63813019	C	0	*	*	1	T	J	2	..	JJ	0	*	*	2	.T	JJ
-Chromosome7	63928209	A	0	*	*	0	*	*	1	.-1T	J	2	.-1T.	FF	1	.	J
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-Chromosome7	63928266	T	0	*	*	0	*	*	1	.	s	2	.G	Vs	1	G	A
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-Chromosome7	63928357	A	0	*	*	0	*	*	1	,	J	2	,,-2tt	JF	1	g	J
-Chromosome7	63935323	G	0	*	*	1	.	s	1	a	J	0	*	*	3	a,,	FJJ
-Chromosome7	63935342	C	0	*	*	1	.	s	1	t	F	0	*	*	3	t,,	JJJ
-Chromosome7	63935413	T	0	*	*	1	,	J	1	g	J	0	*	*	3	gg,	JJF
-Chromosome7	63979354	T	0	*	*	2	g,	JJ	1	g	J	1	,	J	0	*	*
-Chromosome7	64034080	G	1	.	J	1	.-4TATT	F	2	..-4TATT	JJ	0	*	*	0	*	*
-Chromosome7	64335797	C	0	*	*	0	*	*	3	,,t	sss	1	t	s	2	,,	ss
-Chromosome7	64369902	G	1	.-1A	s	2	.-1A.-1A	ss	0	*	*	1	.-1A	s	1	.-1A	o
-Chromosome7	64448134	G	6	.A....	F<JJAJ	3	AA.	J<J	7	...AAAA	7JJJJAJ	1	.	J	4	.AA.	JJJJ
-Chromosome7	64467272	G	0	*	*	2	.A	JJ	0	*	*	1	A	J	1	.	J
-Chromosome7	64467476	C	0	*	*	2	t,	JJ	0	*	*	1	t	J	1	,	J
-Chromosome7	64536761	T	0	*	*	2	,c	JF	2	c,	JJ	2	,c	JJ	7	,,,,cc,	JJAJAJJ
-Chromosome7	64785298	G	0	*	*	2	.+1C.+1C	JJ	2	.-1C.+1C	FJ	0	*	*	2	..	<J
-Chromosome7	64855885	G	1	,	J	2	.$,-1a	FJ	0	*	*	0	*	*	1	,-1a	J
-Chromosome7	64911592	A	0	*	*	1	.-10AATCGTCCAC	K	0	*	*	1	.	J	2	.-10AATCGTCCAC.-10AATCGTCCAC	56
-Chromosome7	65148424	T	0	*	*	1	C	J	0	*	*	1	.	o	2	C.	JF
-Chromosome7	65190990	G	1	a	J	0	*	*	1	.	s	2	,a	JF	0	*	*
-Chromosome7	65312367	A	3	G.G	JJJ	2	.G	JJ	1	G	J	1	T	J	0	*	*
-Chromosome7	65529862	T	0	*	*	2	.C	sj	2	.C	oo	2	.C	ks	1	.	o
-Chromosome7	65529947	A	0	*	*	2	T,	V7	2	,t	JJ	0	*	*	1	,	J
-Chromosome7	65529948	G	0	*	*	2	T,	oF	2	,t	JJ	0	*	*	1	,	A
-Chromosome7	65636974	T	2	G.	JJ	0	*	*	1	G	J	0	*	*	2	..	J7
-Chromosome7	65636984	G	2	.A	JA	0	*	*	1	C	J	0	*	*	2	..	FF
-Chromosome7	65660973	C	1	T	J	2	.T	JJ	1	.	F	0	*	*	0	*	*
-Chromosome7	65671610	T	3	,-4ccgg,-4ccgg,-4ccgg	JFJ	0	*	*	0	*	*	1	,-4ccgg	<	1	,	A
-Chromosome7	65682391	G	2	.A	JF	1	T	J	1	.	F	0	*	*	3	A..	JJJ
-Chromosome7	65763552	C	0	*	*	1	,	J	2	t,	JJ	2	,t	FJ	0	*	*
-Chromosome7	65821924	G	0	*	*	2	..	JJ	11	.....A.....	J<JJFJJJJJJ	6	...T..	JJJJJJ	8	.A...A..	JJJAJJJJ
-Chromosome7	66029077	A	0	*	*	1	.-10CCGGAGGTCC	J	1	.	J	1	.-10CCGGAGGTCC	J	0	*	*
-Chromosome7	66242657	A	1	.	s	1	T	s	0	*	*	3	..T	ess	0	*	*
-Chromosome7	66242665	A	1	,	J	1	G	s	0	*	*	3	..G	sss	0	*	*
-Chromosome7	66242668	G	1	,	J	1	A	s	0	*	*	3	..A	sss	0	*	*
-Chromosome7	66242675	T	1	,	J	1	C	s	0	*	*	3	..C	sss	0	*	*
-Chromosome7	66242701	G	1	,	J	1	C	s	0	*	*	3	,.C	Jss	0	*	*
-Chromosome7	66343611	A	0	*	*	0	*	*	2	g,	JF	2	,g	JJ	1	,	J
-Chromosome7	66343640	T	0	*	*	0	*	*	2	a,	<J	2	,g	JJ	1	,	J
-Chromosome7	66592736	G	1	.-1A	J	2	..-1A	AF	0	*	*	0	*	*	1	.	F
-Chromosome7	66592781	C	1	.	J	2	GT	\J	0	*	*	0	*	*	1	G	o
-Chromosome7	66592784	A	1	.	J	2	G.	9J	0	*	*	0	*	*	1	G	s
-Chromosome7	66592799	T	1	.	J	2	G.	VJ	0	*	*	0	*	*	1	G	o
-Chromosome7	66592824	G	1	.	J	2	.a	JJ	0	*	*	0	*	*	1	A	s
-Chromosome7	66592858	A	1	.	J	2	.t	JJ	0	*	*	0	*	*	1	T	j
-Chromosome7	66599696	C	1	.	J	2	T.	Js	2	T.	Js	0	*	*	0	*	*
-Chromosome7	66599750	G	1	,	7	2	,a	JJ	2	.a	sJ	0	*	*	0	*	*
-Chromosome7	66865436	G	0	*	*	1	A	k	2	.,	os	0	*	*	2	A.	ss
-Chromosome7	66865503	C	0	*	*	1	.$	T	2	T,	js	0	*	*	2	T.	ss
-Chromosome7	67536606	A	4	....	JJJJ	4	.GG.	JJJJ	4	.G..	JJJJ	4	.GGG	JJJJ	7	...G.G.	JJJFJJJ
-Chromosome7	67666083	T	0	*	*	1	,	J	1	,-2aa	J	0	*	*	1	,-2aa	J
-Chromosome7	67686412	C	0	*	*	1	.	j	0	*	*	2	A.	os	1	.-1A	s
-Chromosome7	67801083	G	1	,	J	1	a	A	0	*	*	3	,a,	AJF	0	*	*
-Chromosome7	67995487	A	3	,cc	F<J	0	*	*	2	.c	oA	0	*	*	1	c	J
-Chromosome7	68014365	A	0	*	*	0	*	*	2	G.	JJ	2	..	JJ	1	G	J
-Chromosome7	68422478	C	0	*	*	0	*	*	1	t	<	2	,t	JJ	2	,t	AJ
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-Chromosome7	77120724	G	32	...........................A....	FJJJJJJJFJJJJJJJJJFJJJJFJJJJJJJJ	28	.................-2AT...........	JJJAJJJJJJJJJJFJFJJJJJJJJFJJ	52	.......................-2AT.............................	FJJAJJJJJJFJJJJFJJAJJJJJJJAJJJJJJJJJJJJJFJJJFAJA7JJJ	27	.........................T.	FJJJJJ7JA<JJJJJJJJJJJJJFJJJ	51	...................................................	7FFJJJJJJJJFFJJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJ
-Chromosome7	77120817	C	36	....................................	JJJJJFJJJJJJJJJJJFJ<JJJ<JFJJJ<JJjJsJ	36	..............................T.....	JJsJJJJJJJjJJJJJsFJFFFsJJJFJJJJJfFFA	56	......A.........A.......................................	JFFJJ7JoA7FJJJJFFJAJ7oJJJJJJJJJJJJJJJJJJ7JJ7FF7JAJsJJJsJ	30	....A..T......................	J<sJFsJFJJJJJJJJJJJJJJJJJJJJJJ	53	..A......T..................................A........	FFFJJJJJJFAJJJJJAJJJJJFJJJJJJAJJJJJJJJJJJJJJJJFJJJs`s
-Chromosome7	77120836	T	35	..A....................A...........	JJJJJFAJJJJJFJJJJFJFFF7JFJ<FJJJ`FsJ	34	.......A..............A....A......	Js<VAF<6sFJJFsAJAJAsoJ8JFJJAojJVsn	56	.A......................A...............................	J6JJJFFoAJJJFJJ7JJ7J7oJFNJAJJJJJJJFJJJJJJJ<FJFJFJjJFJssF	30	AA....A.....................AA	JoJFoFFFJJJJJJJJJJFJFFFn<JFAJJ	52	.........................AA.........................	AF<JJJJ7AAJJA<JJJJJJJ7JFJJJJ7JJJFJJJAJFJJJFJJJJJFsVs
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-Chromosome7	79432316	T	1	.	o	0	*	*	2	CC	ss	3	.CC	sss	0	*	*
-Chromosome7	79432332	C	1	,	J	0	*	*	2	.t	sJ	3	TT,	skJ	0	*	*
-Chromosome7	79466315	G	1	,	J	0	*	*	1	A	s	2	A.	os	0	*	*
-Chromosome7	79651446	G	1	,	J	2	A.	ek	2	.A	Jo	1	A	J	0	*	*
-Chromosome7	79696960	C	1	A	7	1	.	F	0	*	*	0	*	*	2	A.	FF
-Chromosome7	79696979	G	1	C	F	1	.	J	0	*	*	0	*	*	2	C.	JF
-Chromosome7	79697254	C	1	t	F	1	,	J	0	*	*	0	*	*	2	t,	AJ
-Chromosome7	79713664	G	0	*	*	0	*	*	2	a,	JJ	1	,	J	1	a	J
-Chromosome7	79736109	C	0	*	*	1	.	s	0	*	*	2	aa	JA	2	,a	J<
-Chromosome7	79782676	G	2	.a	JJ	1	t	A	0	*	*	1	,	J	1	a	F
-Chromosome7	79782976	G	10	aaa,aa,a,,	FJJJJJJJJJ	3	,,,	JJJ	5	,aaaa	J<JJJ	7	,a,a,aa	JFJJJJJ	5	,aa,a	JJJJ<
-Chromosome7	79783820	C	1	T	J	3	..t	jsF	0	*	*	2	..	sJ	0	*	*
-Chromosome7	79886377	A	0	*	*	0	*	*	2	,-6tcgagg,-6tcgagg	;;	1	,-6tcgagg	H	1	,-6tcgagg	J
-Chromosome7	79911907	T	0	*	*	2	..	Js	0	*	*	2	.C	JJ	1	C	J
-Chromosome7	79947998	G	0	*	*	1	,-1a	s	1	,-1a	J	0	*	*	1	,-1a	J
-Chromosome7	79971557	A	1	,-6gggggt	7	1	,-6gggggt	J	0	*	*	0	*	*	1	,	<
-Chromosome7	80085520	T	1	a	o	0	*	*	0	*	*	2	..	ss	2	.A	ss
-Chromosome7	80085524	C	1	t	s	0	*	*	0	*	*	2	..	ss	2	.T	ss
-Chromosome7	80085541	G	1	a	s	0	*	*	0	*	*	2	..	ss	2	.A	ss
-Chromosome7	80085611	G	1	,	j	0	*	*	0	*	*	2	aa	FF	2	a,	FF
-Chromosome7	80163092	T	2	g,	JJ	2	g,	JJ	4	g,,g	JFJ<	1	g	J	3	,,,	JJF
-Chromosome7	80238644	C	0	*	*	1	.-1G	J	2	.-1G.-1G	JJ	0	*	*	2	.-1G.-1G	JJ
-Chromosome7	80264144	C	0	*	*	1	,-1a	J	1	,-1a	J	0	*	*	3	,-1a,-1a,	JJJ
-Chromosome7	80448170	C	0	*	*	1	.-4AGAA	o	1	.-4AGAA	s	1	.-4AGAA	s	0	*	*
-Chromosome7	80496382	A	1	.-1G	J	0	*	*	1	.-1G	J	0	*	*	1	.-1G	J
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-Chromosome7	80624991	C	0	*	*	0	*	*	3	.,t	aJJ	4	,t,,	JJJA	3	,,,	FJJ
-Chromosome7	80625012	T	0	*	*	0	*	*	1	,	J	3	,a,	AJJ	3	,a,	JJJ
-Chromosome7	80753988	T	0	*	*	0	*	*	1	.-1G	A	1	.	F	1	C	J
-Chromosome7	81155312	C	1	G	J	1	.	J	2	G.	JJ	0	*	*	0	*	*
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-Chromosome7	81155387	T	1	C	A	1	.	J	2	C.	JJ	0	*	*	0	*	*
-Chromosome7	81155576	T	1	g	J	1	,	J	2	,g	JJ	0	*	*	0	*	*
-Chromosome7	81155606	A	1	g	J	1	,	J	2	,g	JJ	0	*	*	0	*	*
-Chromosome7	81262163	A	0	*	*	1	G	s	0	*	*	1	.	H	2	T.	Js
-Chromosome7	81262184	A	0	*	*	2	GG	As	0	*	*	1	.	\	2	G.	Js
-Chromosome7	81262187	G	0	*	*	2	C.	Fs	0	*	*	1	.	R	2	C.	Fs
-Chromosome7	81262211	T	0	*	*	2	..	7s	0	*	*	1	A	V	2	.A	Fs
-Chromosome7	81294508	C	0	*	*	0	*	*	2	..	JJ	1	T	s	2	T.	JJ
-Chromosome7	81294566	C	0	*	*	0	*	*	2	.T	JJ	1	.	s	2	.T	JA
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-Chromosome7	81304323	C	2	AA	JJ	2	.A	JJ	0	*	*	0	*	*	2	A.	JJ
-Chromosome7	81374230	T	4	,-9ttgagccga,cc	5JFF	1	c	J	7	,,c,c,c	JJJJJJJ	4	,cc,	JJFJ	7	,cc,c,c	JJJJJJJ
-Chromosome7	81943988	T	1	,	=	1	,-4gatc	;	1	,-4gatc	;	0	*	*	2	,-4gatc,-4gatc	;;
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-Chromosome7	81950975	T	6	,,,,c,	JJJJJJ	2	,c	JJ	4	,,,,	JJJJ	0	*	*	3	g,,	J<J
-Chromosome7	81950984	C	6	,,,,g,	JJJJJJ	2	,g	JJ	4	t,,,	FJJJ	0	*	*	3	,,,	JFJ
-Chromosome7	81950994	C	6	,,,,aa	JJJJJJ	2	,a	JJ	3	,aa	JJJ	0	*	*	3	,,a	JFJ
-Chromosome7	81951049	C	6	,,,,gg	JJJJJJ	2	,g	JJ	3	,g,	JJJ	0	*	*	3	,,,	JJJ
-Chromosome7	81975982	G	1	.-2AA	o	0	*	*	1	.	J	1	.-2AA	F	0	*	*
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-Chromosome7	82195742	A	1	,	s	1	.-2TT	s	0	*	*	1	.-1T	J	0	*	*
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-Chromosome7	82216337	T	2	c,	JJ	0	*	*	0	*	*	1	,	J	3	ccc	FJJ
-Chromosome7	82216546	T	0	*	*	3	C..	JFJ	1	.	J	4	.CC.	JJJJ	0	*	*
-Chromosome7	82216681	T	0	*	*	3	,,,	JAJ	1	a	J	4	a,,a	JJJJ	0	*	*
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-Chromosome7	82469076	T	0	*	*	1	C	A	0	*	*	2	..	<F	2	C.	JJ
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-Chromosome7	82503585	T	0	*	*	1	*	J	2	.*	JJ	0	*	*	1	.	W
-Chromosome7	82503586	C	0	*	*	1	*	J	2	.*	JJ	0	*	*	1	.	W
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-Chromosome7	82503588	A	0	*	*	1	*	J	2	.*	JJ	0	*	*	1	.	j
-Chromosome7	82562258	G	1	,	J	0	*	*	0	*	*	2	a,	JF	3	a,,	AJJ
-Chromosome7	82587523	G	2	t,	AF	1	t	J	0	*	*	0	*	*	1	,	A
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-Chromosome7	82998852	T	0	*	*	2	G.	JF	3	G..	FJJ	1	.	J	0	*	*
-Chromosome7	82999206	C	0	*	*	2	g,	JJ	3	g,,	JJF	2	,,	AJ	0	*	*
-Chromosome7	83398128	T	1	A	F	0	*	*	7	..A.A.A	JJJJJFJ	2	A.	JJ	2	..	JF
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-Chromosome7	83457907	C	2	AA	FA	2	.A	FJ	0	*	*	1	.	J	0	*	*
-Chromosome7	83558612	T	1	,-5ggaga	J	0	*	*	2	,-5ggaga,	@J	0	*	*	1	.	s
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-Chromosome7	83984199	G	0	*	*	0	*	*	1	c	J	1	,	s	2	c,	JJ
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-Chromosome7	84068331	C	1	,-4tata	J	0	*	*	1	,	J	0	*	*	1	,-4tata	J
-Chromosome7	84083202	A	0	*	*	0	*	*	1	,	J	1	g	J	2	.g	sJ
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-Chromosome7	84590932	G	0	*	*	1	,-2gt	8	1	t	s	1	.-2GT	O	1	.-2GT	O
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-Chromosome7	84664906	A	0	*	*	1	.	J	2	G.	JJ	0	*	*	1	G	J
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-Chromosome7	84739935	A	2	,,	J<	5	g,g,,	J<JJJ	1	g	F	0	*	*	4	,gg,	FJJF
-Chromosome7	84751588	C	0	*	*	4	T...	JoJs	5	t..T.	kFFJJ	0	*	*	1	.	J
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-Chromosome7	85573258	G	0	*	*	1	.-8TAATGAGC	5	0	*	*	1	.	J	1	.-8TAATGAGC	6
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-Chromosome7	85757385	C	1	,-2ca	8	1	,-2ca	;	0	*	*	0	*	*	1	,-2ca	;
-Chromosome7	85805365	G	0	*	*	2	.A	JJ	2	.A	JA	3	...	JJJ	0	*	*
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-Chromosome7	86249912	T	1	,	J	0	*	*	2	,c	JJ	0	*	*	1	c	F
-Chromosome7	86297902	C	0	*	*	0	*	*	2	A.	5F	1	A	J	2	A.	5A
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-Chromosome7	86315945	T	0	*	*	1	C	F	0	*	*	1	.	J	2	.C	FJ
-Chromosome7	86469893	A	2	.C	JJ	1	C	J	2	C.	JJ	1	.	J	2	C.	JJ
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-Chromosome7	87068067	G	3	.CC	JJJ	1	.	J	1	C	<	0	*	*	0	*	*
-Chromosome7	87068135	A	3	G..	Joo	1	.	s	1	G	A	0	*	*	0	*	*
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-Chromosome7	87151024	G	2	,t	JJ	0	*	*	0	*	*	1	,	J	1	t	7
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-Chromosome7	87265868	A	0	*	*	1	.-3TGT	G	0	*	*	1	.	J	1	T	J
-Chromosome7	87390172	C	0	*	*	1	.-1G	J	1	.	7	0	*	*	1	.-1G	J
-Chromosome7	87676930	G	0	*	*	0	*	*	1	.	d	1	,-10tgagaacttc	;	1	,-10tgagaacttc	;
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-Chromosome7	87863152	T	0	*	*	0	*	*	2	.-1C.-1C	JJ	1	.-1C	J	1	.-1C	J
-Chromosome7	87863406	T	0	*	*	0	*	*	2	a,	J7	1	a	J	1	,	A
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-Chromosome7	88230410	C	2	A.	JJ	0	*	*	0	*	*	2	.A	JJ	2	..	JJ
-Chromosome7	88230676	C	2	t,	JF	0	*	*	0	*	*	2	,t	AJ	2	,,	AJ
-Chromosome7	88285883	G	1	.	F	0	*	*	0	*	*	1	T	F	2	A.	JJ
-Chromosome7	88303349	C	2	,-4atcg,-4atcg	<<	1	,-4atcg	<	0	*	*	0	*	*	1	,-4atcg	<
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-Chromosome7	88655128	A	0	*	*	0	*	*	1	.-2CC	J	1	.-2CC	J	2	.-2CC.-1C	JJ
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-Chromosome7	88680130	G	0	*	*	1	.	k	0	*	*	2	,.-5CTCGC	F<	1	.-5CTCGC	H
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-Chromosome7	89557286	T	0	*	*	1	*	o	0	*	*	2	.C	os	1	C	o
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-Chromosome7	90023550	T	1	,-1c	J	0	*	*	0	*	*	1	,-1c	J	2	,,	JJ
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-Chromosome7	90289454	C	1	T	J	0	*	*	0	*	*	2	.t	JJ	1	.	J
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-Chromosome7	90289478	G	1	A	J	0	*	*	0	*	*	2	.a	JJ	1	.	J
-Chromosome7	90322782	C	5	TT.TT	JJJAJ	8	T.T...T.	FJJJJJJJ	19	TTTT..T..TT.T.....T	JAJJJJJJJJJJJJJJJ<F	4	T..T	JJJJ	18	TT..TT...T......T.	JJJJJJJJAJJJJJJJJJ
-Chromosome7	90322796	A	5	.+1G.+1G.+1G.+1G.	JFJJF	8	.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G	FFJJJJJF	18	.+1G.+1G.+1G.+1G.+1G..+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G.+1G	JJJJJJJJJJJJJJJJJJ	5	.+1G.+1G.+1G.+1G.+1G	JJJJJ	18	.+1G.+1G...+1G.+1G.+1G.+1G.+1G.+1G..+1G..+1G.+1G.+1G.+1G.+1G	JJJJJJFJFJJJJJJJJJ
-Chromosome7	90469824	G	1	.	s	0	*	*	0	*	*	2	A.	`J	1	A	J
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-Chromosome7	90949780	A	0	*	*	1	,	J	3	,t,	<JJ	0	*	*	1	t	J
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-Chromosome7	90956784	T	1	^].	A	2	AA	JJ	0	*	*	2	,+4acaa.+4ACAA	JJ	0	*	*
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-Chromosome7	90995114	C	3	t,,	JF7	1	t	J	1	,	F	0	*	*	0	*	*
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-Chromosome7	91056383	G	0	*	*	0	*	*	1	T	o	2	A.	ss	2	..	ss
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-Chromosome7	91333103	A	1	,-1c	H	0	*	*	0	*	*	1	,-1c	H	1	,	F
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-Chromosome7	92360947	C	1	,	F	1	,-4gtgt	F	1	,-4gtgt	J	0	*	*	0	*	*
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-Chromosome7	92589657	A	0	*	*	2	G.	JJ	3	GG.	J<J	0	*	*	1	G	J
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-Chromosome7	95038518	G	3	aaa	JJJ	1	,	J	0	*	*	0	*	*	3	a,,	JAJ
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-Chromosome7	143195686	G	192	,TT,TTTTTTT..TTTTTTTTT.T.TTTTTT..T.TTT..T...TT.T.TTT...T..T...TT.T.TT.T.T..TTTTTTT..T..TTT.TT.TT.TT...TTTTT..TTTTTTTTT..TTTTTTT.TT.TTTTATT.TTTTT.TTTTTTT.T..TT.T.T..TT..TTTT.TTT,.T.TTTTTTTTTTTT	FsssJsJFJJJJJJJJJJJ7JJJJJJJJFFJJJAJJJJJ7JJJJJJJJJJJFJAJFJJJ<JJsJ<J7JJFJAJAJJJAJJ<JJJFJJJJJJJsFJJJJJJJJJJJJJJJJFcJJJAJJAAJJJAJ<JJJFJsJJJ<JJFJJJJJJFJJJJJJJFJJJJ7JJAJFJJJJAJJJFjsFJJJsJsJJJJJJJJJ:	123	TT..T...TTT.TTTTTTTTT....T..TTTTTTTTTT..TTTT.TTTT..TTT..TT....T.T.T.T..T.T...T.TTT.TTT.....T.TTTTT..TTTTT.T...T..T.T..TTTTT	<JsJ<FJ<JAJJJJJJJJJJJkJJJJJFjAJJJFJsJFJJ7JJJJFJJJJJ\JJJs7JssJJJsJFFJAJJsAJJjFoJJsJJsFJssssJosssssJJJJsJsFJJJsssJJJsJJJJJJJ7	149	.TT.TTTT..TTTTTTTTTTTTTT..TTT.TTT.T..T.T.TT.T.TTTT.TTT.TTT.TT.TT.TT.TTTTT.T.T..TTTTTTTT...TTT..TT.TTTT..TTT..TTTTT.TTTT.TTTT.TT.TTTTTTTTTTTTtTT.TT.TT	JJJJJJJJJJJJJJJsJJJJJsJJJJJFJJJJJJJJJJsJJJJJJJFJJFJsJJJJJJFJJJJFJJJJAJFJJFJJJJJJJJJJJJJJJJJJJJFJJoJFJJJJ7J<sJJJJ<JJJJF7JJJs7ssosssJsJssJsJsssssJsJJJ7	157	T,TTT..T.T.T.T.TT.T.TTT..T..TTTTTTTTTTTT..TTTTT.T..TTT..TT.TTTTTTTTTTT..TT.T.TTT...TTT..TT.T.TTT.TT.TTT.T..T.TTT.TT.TTTTT.,TTT...T.t,.TT...TTTTT.TTTTT..TTTT.	JsJJF<sJJFJsFJJeFJJJJJJJsF<JJFJJsJJJ<<JJFJJJJJJJsooJsJJs7JsJJJJAJJJJJJJJJJJJJJJJJsJJJJAsJsJsFJJJJFJsJJFJJFJJJJFJJJJAJJcssssjJ<JsJJsJsoJJJsJsssssJsJ_ssJJJJJAF	156	TT.TTTTTT....TT.TTTTTT.TTT.T.TTTTTT.TTTTT.T.TTTTTTT.T.T.TTT..T..T.TTTTTTTTT.TTT.TTTT.T.TTT.TTTTTTTTTT.T.TTTTT.TTT.T.TTTTTTTTTTTTTTTTTTTT....TTT..TT.T.TTTTTT	JJJJFJJFJJF7JJJJJJJJJJJAJJJJ7JJJJJFJJJJJJFJJJFJJJAAJJJJAJJJJAsJJJJJJJJJJJJJAJJJJJJJFJeFJFJFJJJJJJJJJJJJJJJJJJ7JJJJJJsJJJJFFJAJJJFJJJJJJJJJJJJJJJsJJJJJJsJJsJ
-Chromosome7	143196122	A	174	GGG.G.g.GGGGGGG...GG.GGGGGGGGG.G.G.GGG..GG.G....GG.GGGGG.GGGG..GGG...G..GGGGG.G.GGG..GGGG.GGGG.GG.GG..GGG.G..G...G.G.GGGG.GG.GG.GG.GGGGGGGGGG.GG.GGGGGGG....G.GGGGGGGGGG..GGGG	FFFJJJsJJFJJFJJFJJFJJJJJJJJJJJJJJJJFJJJJJJJJJJJFJJ7<JJJAJJJFJJJJJFJJJJJJJJJJJJJAJJFJJJJFJJAJ<JJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJFFJJFJJJJJJJJJJJJJJJ<JJJJJJJJJFJJFJJFJJJJJFJAJJJ	105	G..GGGG..G.GGG..G.GG..GGGGGGG.GG...GG.GGG.G..G.GG.GGGGGGG.G.GG.GGG.GGGG.GGGGGGGG.GGGGG...GG.GG..GGGGG.G..	JJsJJJJJJJJFFJJJJFFJJJJJJ<JJFJJJ<JFJJJJJJJJJJJJFJJJJJJJJJJ<JJJJJJFJJJJJFJJJJJJJJFJJJJFJJJJJJJFJJJJJJJJ;AF	140	.G...GGGGGGGGGGGGG...GGGGGG...G.GGG.G..GG.GGG..GGG.GG...G.G.GGGGGG.GG.G.GGGGGGG.GG....G.G.GGGGG.GG.G.G.G.G.G..GGGGGGGG.G..GGGGGGGGGGGGGGGG.G	AIJJJFJJJJJJAJFJJJJJJJJJJJJJJJFFJJJJJJJFJJJJJJFJJJJ<JJJJJJJFJJJJJJJJAJJJJIJJF<JF7JJJJJJJJJAJJJJJFJJJJJJJJJJJ7JJJJJAFJ<JJ<JAFJJJJFAJJ7JAJJJJJ	137	GGGG.G..G.GG.GG...G.G.GGGGG.GGG...G.GGGGGGGGGGGG.GG..G..G..GG.GGG..GG.GGGGGGGGGGG..GGG.GGGGG.G.GGGG..GGGGGG...GGGGGG.GGG..G.GGG.GGGGGGG..	JJJJJJJJJJJJAJFJJJJJJFFJJFJJJFJJJJJJFFJJJJJJJJJJFJJFJFJJJJJJJJFFAJJJJJJJJJJJJJJFJJJJJJAJJJJJJJAJJJJJAJJJJJJJJFJJ<JJJJJJJJFJ7JJ<JJJJJJJJoo	170	GGGGGGG....GG.G.G.GG.GGGGGG...GGGGGGGGGGG.GG.G.G.GG.GGGGGGGG.G.GGGGGGGGGGGGGGG.GGGGG.GGGGG..GGG..GGGG..GGG.GGG..GGG..GGG.GGG..GGGGGGGGGGGGG.GGGGGGGGGG...GGGGGGGGGG.GGGGGG	JJJFJJJJJJJJJJJFJJJFJFJFJJJJJJJJJJJJFJJ<JJJJJJJJJ<J<JJFJJJFJJJJJFJJJJAAJJJFJFJJJJJJJJJJJ<JFJJFJJJJJJJJJJJJ7FJJAJFJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJAFFJJJJJJJAJJJJJFJJJJF7JJJJ
-Chromosome7	143253557	A	0	*	*	0	*	*	1	G	J	2	.G	JJ	1	.	J
-Chromosome7	143333872	C	3	t,,	JJJ	3	,,,	JJJ	2	,t	JJ	1	*	J	4	t,,,	JJJJ
-Chromosome7	143348506	A	0	*	*	1	G	o	2	.G	sW	0	*	*	1	.	s
-Chromosome7	143383032	A	1	,	F	1	,-1t	J	0	*	*	1	,-1t	J	0	*	*
-Chromosome7	143459151	A	5	..T..	JJJJJ	17	.............T...	JJJJJJJJJJJFJFJFF	9	.T.......	JJJJJJJJJ	12	....TT......	FJJJJJJJJJJJ	21	,...T.............T.T	VJJJJJFJFJJJJJFJJJJJJ
-Chromosome7	143459237	C	5	.....	sJFJA	19	.............T..T..	JJJJJAJsJJFJFAJA<J7	10	.......T..	JJJoJJJJJJ	16	..T.............	7AJJJJJJsFJJFJjJ	21	,.T..................	kJ7JJAJJAJJJJFJ<FFFFJ
-Chromosome7	143459324	A	5	,,,,+1g,+1g	JJJJJ	18	.,.g,,,,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g,+1g	sAVJJJJJJJJJJJJ7JJ	10	,.,,,,+1g,+1g,+1g,+1g,+2gg	JeJJJJJJJF	15	...,+1g,,,,,,,+1g,+1g,+1g,+1g,+1g	sssJFJJJJJAJJJJ	20	,g,,,,,,,,,,+1g,,+1g,+1g,+1g,+1g,+1g,+1g,+1g	<JJJJJJJJFJ7JFJJJJAJ
-Chromosome7	143635746	T	2	.G	JJ	1	C	J	0	*	*	0	*	*	1	.	J
-Chromosome7	143730090	C	1	.-1A	9	0	*	*	2	..	JJ	2	.-1A^V.	J<	0	*	*
-Chromosome7	143730127	G	1	.	7	0	*	*	2	A.	JJ	2	.A	Js	0	*	*
-Chromosome7	143756050	C	0	*	*	1	.-1G	J	1	.-1G	J	1	.	A	0	*	*
-Chromosome7	143756181	G	0	*	*	1	,-1a	J	1	,-1a	J	1	.	R	0	*	*
-Chromosome7	143837668	T	0	*	*	2	.-1C.-1C	JJ	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome7	143938941	T	1	C	J	2	C.	JJ	1	.	J	0	*	*	0	*	*
-Chromosome7	143938946	G	1	A	J	2	A.	JJ	1	.	J	0	*	*	0	*	*
-Chromosome7	143938952	A	1	.-1C	F	2	.-1C.	Fs	1	.	J	0	*	*	0	*	*
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-Chromosome7	143939064	C	0	*	*	2	,t	JJ	1	,	7	1	t	7	0	*	*
-Chromosome7	144024396	A	2	,,	JJ	2	,,-1c	FJ	0	*	*	3	,,g	JJJ	0	*	*
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-Chromosome7	144333442	G	0	*	*	2	.A	JJ	1	A	J	1	.	J	0	*	*
-Chromosome7	144343480	G	2	.A	o`	1	A	s	3	A..	kss	2	.A	as	3	...	sss
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-Chromosome7	144343530	A	1	,-1c	G	1	,	J	3	,-1c,,	CJJ	2	,-1c,	AJ	3	,,-1c,	JCJ
-Chromosome7	144377134	T	0	*	*	1	.	A	1	C	J	0	*	*	2	.C	7J
-Chromosome7	144377159	G	0	*	*	1	.	J	3	T..	JAB	0	*	*	2	.T	FJ
-Chromosome7	144377163	A	0	*	*	1	.	s	3	..-1C.	JJJ	0	*	*	2	.-1C.	FJ
-Chromosome7	144377172	A	0	*	*	1	.	j	3	G..	JWn	0	*	*	2	.G	jJ
-Chromosome7	144377202	G	0	*	*	1	A	s	3	.A.	sAs	0	*	*	2	..	js
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-Chromosome7	144415001	C	0	*	*	2	T,	sJ	1	T	s	0	*	*	1	,	J
-Chromosome7	144415009	C	0	*	*	2	T,	sJ	1	T	o	0	*	*	1	,	J
-Chromosome7	144541909	A	0	*	*	1	G	s	2	.G	ss	0	*	*	1	.	s
-Chromosome7	144557385	C	0	*	*	0	*	*	5	....T	ssesR	3	..,	ssJ	4	..TT	sssj
-Chromosome7	144557409	A	0	*	*	0	*	*	5	..G.,	ssosA	3	..,	eeJ	4	..T.	sssj
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-Chromosome7	144659256	T	0	*	*	0	*	*	1	,	A	2	,c	AF	1	c	J
-Chromosome7	144790135	A	1	G	J	1	.	J	3	G..	FJo	0	*	*	4	.G..	JJ7A
-Chromosome7	144801189	C	0	*	*	0	*	*	1	T	J	1	,	J	2	,t	JA
-Chromosome7	144808604	T	0	*	*	0	*	*	2	cc	7A	1	.	s	3	,c,	JAJ
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-Chromosome7	144834794	G	0	*	*	1	.-3ACC	J	0	*	*	1	.-3ACC	J	2	.-3ACC.-3ACC	JJ
-Chromosome7	145014218	C	1	.	s	0	*	*	1	.-6CCATGG	5	1	,-6ccatgg	I	0	*	*
-Chromosome7	145035571	T	5	.AA..	JJJJF	3	.A.	JJJ	4	...A	JJJJ	7	....A..	J<JJJJF	5	.....	FFFJJ
-Chromosome7	145036129	C	0	*	*	1	T	f	2	..	ss	4	.T..	ssss	0	*	*
-Chromosome7	145047825	T	0	*	*	3	.-3ATA.-3ATA.-3ATA	999	1	.-3ATA	9	1	.	J	0	*	*
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-Chromosome7	145256147	A	1	.-2CG	@	0	*	*	1	.-2CG	J	1	.-2CG	J	0	*	*
-Chromosome7	145282003	C	0	*	*	2	.T	JJ	1	T	J	0	*	*	1	*	J
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-Chromosome7	145688780	C	1	,	J	0	*	*	1	a	J	0	*	*	2	.a	HJ
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-Chromosome7	145765698	T	6	c,,,,,	<JJJFF	0	*	*	6	,a,,,,	J8J7JF	4	,,,,	J<J<	10	,,c,,,,,,,	J77J77JFAJ
-Chromosome7	145765807	C	6	,,,,,,	JFJJJJ	0	*	*	6	,,,t,,	JJJJJJ	4	,,,t	JAJF	13	,,,,,,,,,,t,,	JF7JJ7<JJJJJ7
-Chromosome7	145886262	T	0	*	*	2	,g	JJ	0	*	*	1	g	J	1	a	J
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-Chromosome7	146262645	C	18	,,,,,,,,t,,,,,,,,,	JJJJJJJFFJJJJJJJJJ	10	,,,,,,,,,,	JJJJAJFJJJ	21	,,,,t,,,,,,,,,,,,,,,t	JFJJJJFJJJJJJJJJJJJJJ	11	,,,,t,,,,,,	JJJJJFFFJJJ	20	,,,,,,,,,,t,,,,,,,,,	FJJFJJFJJJFJJJJJJAJJ
-Chromosome7	146295996	G	1	.	J	0	*	*	1	A	J	0	*	*	2	A.	J7
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-Chromosome7	146296263	T	1	,	F	0	*	*	1	c	F	0	*	*	2	c,	FF
-Chromosome7	146464033	C	2	.t	JA	2	tt	AF	0	*	*	0	*	*	1	.	s
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-Chromosome7	146716362	G	2	T.	JJ	0	*	*	1	.	J	0	*	*	1	A	J
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-Chromosome7	146809188	C	1	a	7	2	.a	gJ	0	*	*	1	.	A	0	*	*
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-Chromosome7	146829344	T	6	CC.CCC	JJ<JJJ	2	.C	JJ	0	*	*	0	*	*	1	.	J
-Chromosome7	146889566	A	1	,	J	2	,g	JJ	6	,gg,,,	JFJJFJ	4	,,gg	FJJF	7	gg,gg,g	JJJJJJA
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-Chromosome7	146929784	A	0	*	*	0	*	*	2	C.	<A	1	C	J	1	.	A
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-Chromosome7	146950160	G	3	...	JJJ	2	.T	JJ	1	T	J	0	*	*	0	*	*
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-Chromosome7	147124175	A	1	.	J	2	.T	JF	1	T	J	0	*	*	3	T..	JJJ
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-Chromosome7	147124412	A	0	*	*	2	,g	JJ	1	g	J	0	*	*	3	,g,	JJJ
-Chromosome7	147124418	T	1	,	J	2	,c	JJ	1	c	J	0	*	*	3	,c,	JJJ
-Chromosome7	147124419	C	1	,	J	2	,a	JJ	1	a	J	0	*	*	3	,a,	JJJ
-Chromosome7	147124425	C	1	,	J	2	,,-1a	JJ	1	,-1a	J	0	*	*	3	,,-1a,	JJJ
-Chromosome7	147151832	T	2	.C	JF	1	.	s	0	*	*	0	*	*	1	C	J
-Chromosome7	147215157	T	1	.	J	1	.-1A	J	0	*	*	0	*	*	1	.-1A	J
-Chromosome7	147371090	G	5	AA.A.	FJJJF	4	..AA	JsJJ	12	,.........A.	sJJJJJJJosJJ	8	........	JAJFJFJJ	9	...A.A...	JJJJJJJJJ
-Chromosome7	147371098	C	5	TT.T.	JJJJF	4	..TT	JsJJ	13	,..........T.	sFJJJJJJ7ssJF	7	T..T.T.	JJ<JJJJ	9	...T.T...	JJJJJJJJJ
-Chromosome7	147380164	G	1	,	J	0	*	*	4	c,,,	JJJA	0	*	*	1	c	J
-Chromosome7	147380910	G	1	A	J	2	.A	oJ	6	....A.	sssJJo	3	...	sJs	2	A.	JA
-Chromosome7	147388231	C	3	,,,	JJF	2	,A	J`	1	T	J	0	*	*	0	*	*
-Chromosome7	147388327	C	5	,,,,A	FJFAJ	1	A	j	2	..	sF	0	*	*	0	*	*
-Chromosome7	147390185	C	1	.	J	0	*	*	1	T	J	2	.T	<J	2	.T	J7
-Chromosome7	147403009	T	0	*	*	1	,	J	0	*	*	1	c	J	3	,,c	JJJ
-Chromosome7	147405041	T	0	*	*	0	*	*	3	.C.	eF7	1	.	J	4	CCCC	FJA7
-Chromosome7	147405436	G	1	a	J	0	*	*	1	,	J	0	*	*	4	,,,a	JJJJ
-Chromosome7	147405479	A	1	g	J	0	*	*	2	,,	J7	0	*	*	4	,,,g	JJJJ
-Chromosome7	147411997	C	4	T...	JFJJ	2	T.	JJ	5	.....	JJJJJ	6	...T..	JJJJFJ	2	T.	JJ
-Chromosome7	147511952	G	1	.-1A	I	0	*	*	0	*	*	1	.	J	1	.-1A	I
-Chromosome7	147659471	G	0	*	*	3	..+1C.+1C	<;C	1	.	J	0	*	*	2	.-1T.-1T	JJ
-Chromosome7	147744973	G	0	*	*	1	T	[	0	*	*	1	,	s	2	t,	JJ
-Chromosome7	147764410	T	1	.-1C	J	0	*	*	2	.-1C.-1C	JF	0	*	*	1	.-1C	J
-Chromosome7	148198796	G	3	..T	JJJ	0	*	*	3	...	JJJ	0	*	*	2	TT	JJ
-Chromosome7	148198800	G	3	...	JJJ	0	*	*	3	AA.	JJJ	0	*	*	2	AA	JJ
-Chromosome7	148198917	T	4	Cc,,	_JAJ	0	*	*	3	.$cc	nAJ	2	.c	os	2	cc	JJ
-Chromosome7	148198951	C	3	,,a	JJ5	0	*	*	3	,gg	JJJ	1	.	s	0	*	*
-Chromosome7	148199059	C	0	*	*	2	.t	Js	3	t..	sHF	2	..	JJ	0	*	*
-Chromosome7	148199067	G	0	*	*	2	.a	Jk	3	,..	sjo	2	A.	JJ	0	*	*
-Chromosome7	148199071	G	0	*	*	2	A,	Js	3	,A.	s\e	2	T.	FJ	0	*	*
-Chromosome7	148199090	T	0	*	*	2	.a	Fj	3	,C.	sks	2	..	JJ	0	*	*
-Chromosome7	148199137	G	0	*	*	2	.,	kj	3	,A.	sas	2	A.	As	0	*	*
-Chromosome7	148199147	G	0	*	*	2	.a	sa	3	,A.	o`o	2	A.	Jo	0	*	*
-Chromosome7	148199163	C	0	*	*	2	.,	ks	2	.T	R`	2	T.	Fs	0	*	*
-Chromosome7	148199168	T	0	*	*	2	.c	k5	2	.C	M]	2	A.	Fs	0	*	*
-Chromosome7	148199176	G	0	*	*	1	,	J	2	aa	FJ	2	A.	Js	0	*	*
-Chromosome7	148199190	G	0	*	*	1	,	F	1	a	J	2	A.	bs	0	*	*
-Chromosome7	148199193	C	0	*	*	1	,	J	1	a	J	2	G.	bs	0	*	*
-Chromosome7	148199198	A	0	*	*	1	,	J	1	g	J	2	G.	[s	0	*	*
-Chromosome7	148217976	G	0	*	*	0	*	*	3	,,a	JJA	1	a	J	1	,	J
-Chromosome7	148217981	T	0	*	*	0	*	*	3	ccg	JJJ	1	g	J	1	,	J
-Chromosome7	148218000	C	0	*	*	0	*	*	3	,,t	FFF	1	t	F	1	,	F
-Chromosome7	148224932	A	0	*	*	0	*	*	1	.-1T	F	1	.-1T	J	2	..-1T	JJ
-Chromosome7	148280843	C	1	a	A	0	*	*	1	,	J	0	*	*	2	g,	JJ
-Chromosome7	148280848	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
-Chromosome7	148280879	G	1	a	7	0	*	*	1	,	J	0	*	*	2	a,	FJ
-Chromosome7	148280908	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
-Chromosome7	148280911	T	1	c	J	0	*	*	1	,	J	0	*	*	2	c,	JJ
-Chromosome7	148314979	G	0	*	*	4	,..t	FsJJ	2	,a	JJ	2	,,	JJ	0	*	*
-Chromosome7	148318811	G	2	,a	<J	0	*	*	0	*	*	2	.,	sJ	1	a	J
-Chromosome7	148411800	C	1	t	J	2	T.	sJ	1	,	J	0	*	*	0	*	*
-Chromosome7	148535565	T	0	*	*	0	*	*	1	.-1C	s	1	.-1C	f	1	.	F
-Chromosome7	148597564	C	0	*	*	4	....	JJJJ	2	.T	AJ	0	*	*	1	T	J
-Chromosome7	148620276	C	0	*	*	0	*	*	1	,-1a	J	1	,-1a	J	1	,	J
-Chromosome7	148661594	A	0	*	*	0	*	*	1	.	A	1	G	J	2	,G	sA
-Chromosome7	148661671	T	0	*	*	0	*	*	1	.	J	1	C	o	2	,C	sJ
-Chromosome7	148661673	A	0	*	*	0	*	*	1	.	<	1	G	o	2	,G	sJ
-Chromosome7	148661677	T	0	*	*	0	*	*	1	.	J	1	C	s	2	,C	sJ
-Chromosome7	148661683	T	0	*	*	0	*	*	1	.	F	1	C	s	2	,C	sJ
-Chromosome7	148661692	G	0	*	*	0	*	*	1	.	J	1	A	s	2	,A	sF
-Chromosome7	148748786	A	0	*	*	1	,-5tgcac	;	1	,	F	1	,-5tgcac	;	0	*	*
-Chromosome7	148766597	T	0	*	*	1	C	J	1	.	o	2	.C	Js	0	*	*
-Chromosome7	149349323	T	3	.+1A.+1A.+1A	JJJ	0	*	*	2	.+1A.	FJ	0	*	*	1	.	F
-Chromosome7	149349335	T	3	CCC	JJJ	0	*	*	2	A.+2AC	J?	0	*	*	1	.	J
-Chromosome7	149349523	A	3	t,,	JJJ	1	T	o	2	,,	JF	0	*	*	0	*	*
-Chromosome7	149349534	T	3	c,,	JFJ	1	A	s	2	,,	JJ	0	*	*	0	*	*
-Chromosome7	149349569	C	3	aa,	JJJ	1	A	s	2	,,	JF	0	*	*	0	*	*
-Chromosome7	149349572	G	3	a,,	JJA	1	A	s	2	,,	JJ	0	*	*	0	*	*
-Chromosome7	149358685	T	0	*	*	1	c	7	2	,c	JJ	0	*	*	1	,	F
-Chromosome7	149358758	G	0	*	*	1	c	J	2	,c	JJ	0	*	*	1	,	J
-Chromosome7	149358770	G	0	*	*	1	c	F	2	,c	JJ	0	*	*	1	,	J
-Chromosome7	149508647	T	0	*	*	1	.	J	1	.-3AGC	J	0	*	*	1	.-3AGC	J
-Chromosome7	149510115	A	0	*	*	1	c	J	2	.,	JF	2	c^],	A;	0	*	*
-Chromosome7	149510117	A	0	*	*	1	g	J	2	.,	AF	2	g,	J>	0	*	*
-Chromosome7	149510122	A	0	*	*	1	c	J	2	.,	JJ	2	c,	FF	0	*	*
-Chromosome7	149510123	T	0	*	*	1	c	J	2	.,	FJ	2	c,	FJ	0	*	*
-Chromosome7	149510160	G	0	*	*	2	a.	Js	2	.,	JJ	2	a,	<F	0	*	*
-Chromosome7	149510176	C	0	*	*	2	a.	Js	2	.,	JJ	2	a,	FA	0	*	*
-Chromosome7	149510209	C	0	*	*	2	g.	Js	2	.,	FJ	2	g,	JJ	0	*	*
-Chromosome7	149510210	A	0	*	*	2	g.	Js	1	,	J	2	g,	JJ	0	*	*
-Chromosome7	149510222	A	0	*	*	1	g	8	1	,	J	2	g,	8J	0	*	*
-Chromosome7	149513237	C	0	*	*	1	*	J	0	*	*	1	,	A	1	.-1A	a
-Chromosome7	149870642	C	0	*	*	2	t,	JJ	0	*	*	1	a	A	1	,	J
-Chromosome7	149889174	A	2	,-4taag,-4taag	55	0	*	*	0	*	*	1	.	s	1	,-4taag	5
-Chromosome7	150079851	T	0	*	*	0	*	*	1	.-1G	J	1	.	<	2	.-1G.	JJ
-Chromosome7	150079986	T	0	*	*	2	CC	ss	0	*	*	1	,	<	3	C,c	sJJ
-Chromosome7	150273116	A	6	,,,,,g	JJJJJJ	5	.g,,,	sJJJA	4	,,g,	JJJF	5	,.,g,	JfJAJ	8	,,,,,,,,	7FJJFJJF
-Chromosome7	150401611	T	1	.-1C	J	1	G	s	0	*	*	0	*	*	1	.-1C	J
-Chromosome7	150524942	C	1	.	J	0	*	*	2	.G	JJ	1	G	J	2	G.	FJ
-Chromosome7	150524980	G	0	*	*	0	*	*	1	,-3aac	6	1	,-3aac	6	2	.-3AAC,-3aac	_6
-Chromosome7	150525031	C	1	,-2ct	7	0	*	*	1	,-2ct	7	1	,-2ct	7	1	,-2ct	7
-Chromosome7	150553761	T	1	,	J	0	*	*	1	,-4aaaa	J	0	*	*	1	c	J
-Chromosome7	150625450	A	0	*	*	1	g	<	0	*	*	2	Gc	eF	1	.	J
-Chromosome7	150625464	A	0	*	*	1	,	J	0	*	*	2	.c	jJ	1	G	J
-Chromosome7	150625492	C	0	*	*	2	a.	<A	0	*	*	2	Aa	VJ	1	.	<
-Chromosome7	150625494	A	0	*	*	2	g.	FF	0	*	*	2	G,	oF	1	G	J
-Chromosome7	150625509	G	0	*	*	2	t.	JJ	0	*	*	2	Tc	sF	1	.	F
-Chromosome7	150625513	G	0	*	*	2	a.	JJ	0	*	*	2	Aa	oJ	1	.	F
-Chromosome7	150625516	C	0	*	*	2	a.	FJ	0	*	*	2	Aa	oJ	1	.	A
-Chromosome7	150625521	G	0	*	*	2	t.	JJ	0	*	*	2	T,	sJ	1	T	F
-Chromosome7	150625533	C	0	*	*	2	a.	JJ	0	*	*	2	Aa	VJ	1	.	J
-Chromosome7	150625540	T	0	*	*	2	g.	<J	0	*	*	2	gg	JJ	1	.	J
-Chromosome7	150625710	T	1	C	J	1	,	J	0	*	*	0	*	*	2	,c	JJ
-Chromosome7	150842663	C	0	*	*	2	.G	jW	1	.	`	0	*	*	1	g	F
-Chromosome7	150870104	T	0	*	*	1	.	F	1	G	F	0	*	*	3	..G	JJJ
-Chromosome7	150952450	T	0	*	*	7	....G..	nnjnJVn	6	...A..	snJJJn	9	.........	VnnnnJJJn	16	...............A	JnnJnnnnjnjnnnnF
-Chromosome7	150952458	G	0	*	*	7	T...T..	sssooes	6	.T....	ssJsVs	9	.........	ssossjJJs	15	.....T.....T...	Jsssssoosss`sjk
-Chromosome7	150952459	A	0	*	*	7	C...C..	sssoses	6	.C.+6TCTCTC..+4TCTC.	ssFsVs	9	.......+6TCTCTC.+6TCTCTC.	ossssaJJs	15	.+6TCTCTC....C.....C...	Jsssssosssssss\
-Chromosome7	151043725	G	0	*	*	1	,-4aaat	F	0	*	*	2	,,	JJ	1	,-4aaat	J
-Chromosome7	151066211	C	1	,-2at	H	0	*	*	0	*	*	2	,-2at,-2at	H7	2	,-2at,	HF
-Chromosome7	151095376	G	0	*	*	0	*	*	1	c	A	2	.T	ss	2	t,	JJ
-Chromosome7	151095386	A	0	*	*	0	*	*	1	t	A	2	.T	os	2	,,	JJ
-Chromosome7	151095388	G	0	*	*	0	*	*	1	t	J	2	.T	ss	2	,,	JJ
-Chromosome7	151095396	G	0	*	*	0	*	*	1	t	F	2	A.	ss	2	,a	JJ
-Chromosome7	151095399	C	0	*	*	0	*	*	1	a	A	2	.A	ss	2	,,	JJ
-Chromosome7	151095420	G	0	*	*	0	*	*	1	t	J	2	,C	Js	2	,,	JJ
-Chromosome7	151095442	C	0	*	*	0	*	*	1	,	J	1	t	J	2	,t	JJ
-Chromosome7	151116773	G	1	.	<	0	*	*	4	CC.C	JJJJ	2	.C	JJ	1	C	F
-Chromosome7	151116802	C	1	T	F	0	*	*	4	..AT	FJJJ	2	.A	AJ	1	.	J
-Chromosome7	151116935	G	1	,-1c	@	0	*	*	1	.	s	2	.-1C,-1c	@7	0	*	*
-Chromosome7	151555818	C	2	..	JF	0	*	*	0	*	*	1	A	F	2	.A	sJ
-Chromosome7	151555823	G	2	..	JJ	0	*	*	0	*	*	1	A	J	2	.A	sJ
-Chromosome7	151555918	G	2	,,	JJ	0	*	*	0	*	*	1	A	s	2	,a	JJ
-Chromosome7	151600294	T	1	,-1c	H	0	*	*	2	,-1c,-1c	HH	0	*	*	3	,-1c,-1c,-1c	AHH
-Chromosome7	151844104	G	4	..T.	ssRV	4	TT..	ssoo	4	T...	skos	3	.T.	osV	1	.	s
-Chromosome7	151906721	T	0	*	*	1	C	A	2	C.	FJ	1	.	J	0	*	*
-Chromosome7	151906725	C	0	*	*	1	T	J	2	T.	FJ	1	.	J	0	*	*
-Chromosome7	151906749	A	0	*	*	1	.-1G	W	2	.-1G.-1G	AJ	1	.	J	0	*	*
-Chromosome7	151906780	A	0	*	*	1	.-1G	j	2	.-1G.-1G	JJ	1	.	J	0	*	*
-Chromosome7	151916564	G	2	tt	7J	0	*	*	1	,	J	0	*	*	3	t,,	<7A
-Chromosome7	151916592	A	2	,-1t,-1t	AJ	0	*	*	1	,	J	0	*	*	3	,-1t,,	<<J
-Chromosome7	151916624	G	1	a	J	0	*	*	1	,	J	0	*	*	2	a,	FJ
-Chromosome7	151916651	C	2	tt	AJ	0	*	*	1	,	J	0	*	*	3	t,,	JJA
-Chromosome7	151917338	G	1	,	J	0	*	*	1	t	J	3	.tt	sFJ	0	*	*
-Chromosome7	151917365	A	1	,	J	0	*	*	1	g	J	3	.gg	sJ7	0	*	*
-Chromosome7	151962866	C	2	T.	J7	4	T...	JJ`J	0	*	*	0	*	*	2	..	JJ
-Chromosome7	151962904	T	1	C	J	4	C...	JJss	0	*	*	0	*	*	2	..	FJ
-Chromosome7	151962907	A	2	G.	JF	4	G...	JJss	0	*	*	0	*	*	2	..	FJ
-Chromosome7	151963027	C	2	t,	JJ	3	,,t	JJJ	0	*	*	0	*	*	2	,,	JJ
-Chromosome7	151963030	A	2	ct	JJ	3	,c,	JJJ	0	*	*	0	*	*	2	,,	JJ
-Chromosome7	151963058	C	2	t,	JJ	2	,,	JJ	0	*	*	0	*	*	2	a,	JF
-Chromosome7	151963084	G	2	a,	JJ	2	a,	JJ	0	*	*	0	*	*	2	,,	JJ
-Chromosome7	152050618	A	1	c	J	0	*	*	2	ct	FJ	1	.	s	0	*	*
-Chromosome7	152067046	T	0	*	*	2	..-3ATA	A8	1	.-3ATA	7	0	*	*	1	.-3ATA	7
-Chromosome7	152067217	A	0	*	*	2	g,	JJ	1	g	J	0	*	*	1	,	F
-Chromosome7	152153159	G	2	,-1c,-1c	JJ	0	*	*	1	,-1c	J	0	*	*	6	,-1c,-1c,-1c,-1c,-1c,-1c	FJJFJF
-Chromosome7	152153172	G	2	,-1a,-1a	FF	0	*	*	1	,-1a	A	0	*	*	6	,-1a,-1a,-1a,-1a,-1a,-1a	JJJJJJ
-Chromosome7	152190843	C	0	*	*	1	.	J	1	.-4CTAG	?	1	.-4CTAG	7	0	*	*
-Chromosome7	152202726	G	1	,	J	0	*	*	1	A	K	0	*	*	2	C.	ss
-Chromosome7	152202758	C	1	,	J	0	*	*	1	A	M	0	*	*	2	T.	ss
-Chromosome7	152202792	G	1	,	J	0	*	*	1	t	J	0	*	*	2	,t	JJ
-Chromosome7	152202793	A	1	,	J	0	*	*	1	g	F	0	*	*	2	,g	JJ
-Chromosome7	152202858	A	1	,	J	0	*	*	1	g	J	0	*	*	2	,g	JJ
-Chromosome7	152264926	C	1	.	J	0	*	*	0	*	*	2	.T	JJ	1	T	J
-Chromosome7	152264989	T	1	.	J	0	*	*	0	*	*	2	.C	Js	1	C	J
-Chromosome7	152264998	G	1	.	J	0	*	*	0	*	*	2	T.	Jo	1	A	J
-Chromosome7	152265024	C	1	A	J	0	*	*	0	*	*	2	T.	Fk	1	.	A
-Chromosome7	152272837	C	0	*	*	1	t	J	3	a,,	JJJ	0	*	*	2	,,	J<
-Chromosome7	152294855	T	0	*	*	1	,	J	1	c	J	0	*	*	2	c,	JJ
-Chromosome7	152300847	G	0	*	*	1	.-3GAT	8	0	*	*	1	.-3GAT	8	1	.-3GAT	B
-Chromosome7	152341298	C	1	.-6TGGTAT	J	0	*	*	0	*	*	1	.	J	2	.-6TGGTAT.	J<
-Chromosome7	152486146	G	0	*	*	1	A	J	0	*	*	1	.	J	2	A.	JJ
-Chromosome7	152497740	C	1	,	J	0	*	*	0	*	*	1	,-5agagt	J	1	,-5agagt	A
-Chromosome7	152497754	A	1	,-1c	J	0	*	*	0	*	*	1	,-1c	J	1	,-1c	J
-Chromosome7	152499259	T	0	*	*	2	CC	JJ	2	CG	JF	0	*	*	1	G	J
-Chromosome7	152499266	G	0	*	*	2	..	JJ	2	.T	JJ	0	*	*	1	T	J
-Chromosome7	152499283	C	0	*	*	2	..	JJ	2	.T	JJ	0	*	*	2	T.	AJ
-Chromosome7	152499294	T	0	*	*	2	..	FJ	2	..-1G	JA	0	*	*	2	.-1G.	JJ
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-Chromosome7	208841699	A	8	.-6GATGAT.......	8JJJJJFF	12	............	JJJJJJFJFJJJ	10	T.........	JJJJJJJJJF	4	....-6GATGAT	JJ<8	12	............-6GATGAT	JJJJJJJFJJJ8
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-Chromosome7	208911752	A	1	.-2TT	F	0	*	*	0	*	*	1	.-2TT	J	1	.-1T	J
-Chromosome7	208912406	G	2	.A	<J	0	*	*	1	.	7	0	*	*	1	A	J
-Chromosome7	208912549	C	2	g,	JF	0	*	*	1	,	7	0	*	*	1	g	7
-Chromosome7	208912614	G	2	t,	JA	0	*	*	1	t	J	0	*	*	1	a	7
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-Chromosome7	208912656	A	2	g,	J7	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome7	208914066	C	1	A	J	0	*	*	1	.	J	2	a.	sJ	0	*	*
-Chromosome7	208914071	C	1	T	J	0	*	*	1	.	F	2	t.	sJ	0	*	*
-Chromosome7	208914084	C	1	T	o	0	*	*	1	.	J	2	t.	sm	0	*	*
-Chromosome7	208914091	G	1	.	s	0	*	*	1	A	J	2	,A	sn	0	*	*
-Chromosome7	208914101	T	1	C	s	0	*	*	1	.	s	2	c.	ss	0	*	*
-Chromosome7	209141862	T	4	C...	FoJJ	2	CC	JJ	2	C.	Js	5	..C..	JJJJJ	2	..	JJ
-Chromosome7	209156182	A	0	*	*	1	.	s	0	*	*	1	.-10GGAAAAACTG	S	1	.-10GGAAAAACTG	S
-Chromosome7	209200996	A	0	*	*	0	*	*	3	t,,	JJF	1	t	J	1	,	J
-Chromosome7	209201018	T	0	*	*	0	*	*	3	,aa	JJJ	1	,	J	1	a	J
-Chromosome7	209201102	A	0	*	*	0	*	*	3	,gg	JJJ	1	,	F	1	g	J
-Chromosome7	209225400	G	0	*	*	2	..	FJ	1	T	J	2	T.	Js	0	*	*
-Chromosome7	209247524	T	0	*	*	1	G	J	2	.G	JJ	0	*	*	1	.	J
-Chromosome7	209249142	G	1	t	J	0	*	*	3	..,	soF	2	,t	JJ	0	*	*
-Chromosome7	209277132	A	1	.	J	0	*	*	1	C	J	0	*	*	3	CC.	JJJ
-Chromosome7	209308109	C	2	.T	<J	1	T	J	0	*	*	1	.	s	0	*	*
-Chromosome7	209352688	A	141	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	AJJJJJJ<JJJJJJJJJJJJJJJJJJJJJJJ7JJJJJJAJJJFJJJJJFJJJJFJJJFJJJJFJAJJJJJFJJJJJ7JJJAJJJJJJJJJJJAJFFJJJAJJJJJJJJJJJJJ<JJFJJJJJFJJAJJJFJJJJJFJFJJJ	75	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	F<JJJ7JJJJJJJJJ<JJFJJ<AJJJJJJ7<JJJJJFJJJJJJJFJJJJJJF<FJJJJJ7JFJFJJ<JJAJ7JJJ	123	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGG	JJJJJJJJJJJJJAJJJJJJFJJJJJJ77JJJJJAJJJJJJJJJJJAJJ<JJJJJFJJFJJJAJFJJJJFJJJFJJJJJJJJJFJ7FJJJFJJJFJJJJJJJJJJJJJ<JJJJJJJJJJJJJ<	70	GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGG	JJJJJJJJJFFFFJJJJJJJJJFAJJJJFJJJJ7JJFJJJFJJJJJJJJJJJFJJFJJJJFJJJJJJJJJ	165	GGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG.GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	A7JJJFJJJJJJJJ<AJAJJJJJJJJJJAJ7FFJFJJJFJJJJJJJJJFJJJ<JJFJJJJJJJJJJJJJJJJJFJJFJJJJJ<AF7<FJJJJJJJJJJJJJJFJFJFFJJJJJJJJFAJFJJF<JJJJJJ<JJJJFJJJJJFJJJJJJJFJ7JJJJFJJJJJJJJ
-Chromosome7	209352694	G	142	..............................................................................................................................................	JJFJJJJJJJJJJFJJJJ7J<JFJJJFJJJJAJJJJJFJFAJJJJJJF<JJ7JJJJJJJJJJFFFJJJJJJ7JJJFJFJJJJJJJJJJJJJJFJFAFJJJFJJJFJJFJJJJJJJJJJFJJJJJ<J<JJJJJJJJJ7JFJJJ	76	..A....................................A....................................	JJJJ7J7JJJFJJFJJFJF<JFA7FFJJJJ7FJJJJJFJJFJJJJJJFJ7JJ7AJJJJJJJJJJJJJJJJFFJFJA	127	............................................................T....................A.............................................	JJJJJFJJJJJJJJFJ7FJJJJJJJJJJJAJ7JAJJJJ<J<J7JJJFJAJJAJJJJJJFJJJJJJJJJ7JFJJJJJJJJFJJJJJJJJ<JJAJJJJ<JJJJJJJJJJJJJAJJFJJJJJJJFJJAJJ	72	............................................................A...........	JJJJJJJJJJ7FAJJJJJJJJJJFJJJFJJJJJJJJJJJJJJJJFJJJJJJJJAJJFJJJFJJJJJJJJJJJ	165	.......................................................................................................................................T.............................	JJJJJJJJJJJAA7JJJJJJAFJJJJJJJJ<JAJJJJJJJJJAFJJ<JJ<7JJFJJJJAJFJJFJJJJJJJJJJFJFAJJJJJJFJFFJAJJJJJJJJJJJJJJJJJFJJ7JJJJAFJJJJJAJJJJJJJJAJJJAJJJJJJJJJJJJJJAJJJJJJJJJJJJ<F
-Chromosome7	209352702	C	145	...............+1T..................................................................................................................................	FJJ7JJ7FJJJJJJJJFJJJJFJFJFJJJJJJJJJJJJ7JJJJJJJJJJAJJJJJFJJJJJJJJAF<JJJFJJFJJJJJJJJJFJJJJJJJJJJJJAJFJJ<JJ7JAJJF<JJJJJJJFFJJJJJJAJ7JJJ7FJJJJFJFJJJA	77	.............................................................................	JFJJFJ77JJJJJFJFJJJ<JJFAFJJJJFJJJJJJAJJJJJ7JJJJJJJJJ<<FJ<JJFJFJJJJFJJJJF7FJJF	131	...............T...........................-1T........................................................................................	FJJJJJJJJJJJJJJJFJFJJFJJJJJJJFJFJJJJFJAJJJJJJJJJJJJJFJJJJJJJJJFJFJJJJFJJJJJJJJJJJJJJJAJFJJJJJJJJJ<JJJ7JJJJJJJJJFJJFJJJJJJJJFFFJJF<A	74	.....+1T.....................................................................	JJFJJJJFFJFJFJJFJJJJJJ<JJJJJAJJJAFJJFFJJFJJJJFJJJJJJJJFJJJJJFJJJFJJJ7JJJJA	168	........................A..............................................................-1T.................................................................................	JJFJJJJJJJJJFAFJJJJJJJJJJJJJ7JFJJJJJAFJJJJJJJJJJFJJJFJJFJJFJJJJFJFJJ<JJJJJJFJJJJJJJFJJAFJJJJJJJJJJJJJJJJJJJFJFJJJJ<FFJJJJJJJJJJJAJJFJJJJAJJJJJJJJJJFJJAJJJJJJJJJJJFJJAJF
-Chromosome7	209352994	C	142	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	7FJJJJJAFA<<JJAJAJAJ7FFJJJAJFAFFJAFFJ7<JJ7<J<AFFJJJ<JJJAJJJJJJJJJJJJJJJJJJ7JFJJJJJJJAJJJJ7FJJF<<7FJ<7FJJJFFAJ<7JJJJJ7JJFJJJJJJJJJJJJFJFJJJJAJJ	79	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,	FJFJFJ7FAJ<JJJFFFJJJJJAJ<J<J7J<JFJ7A7<JF7JFJFJJ<AJJJFJJFJ7F7JFJJA7JJJJAJ7FFJFJJ	127	,,,-1t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJ<FJJJJJJFJAJFJFJFJJJJJJJJJJJAJAJJJFAAJJFJAJA<7JJJFJFJJFJJJFJJJAJJAJJ7J7A<JFFAJJJJJFJ7JJ7JJJJAJAFFJJJJJAFJJJJJJFJA<<<AFA	75	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJAJJ<AJJJ<FJJJJAJJJJFJFJAJJ7J<JJJJJ<FJAJAJFFJJJJ<FJJJ<JAJJ<JJJFJ7JFJFFJAF	165	,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJ<JF<FJJJJJJJJFJJJJFJJFJ<JJJJ7FJJ<JJJJJJJFFJJJJJF<JJFAJJFJJJJJJJJAJJJJJFAJJJFJJF<JJFJJJ7FJJJJ<FFJJJJJJJFJJJJJJJFJJJAJFJJJJJJJFJF7A<JFJAJJJ<AFJJJ<JJJF<7JJFJJFJJJJF
-Chromosome7	209353009	G	142	,,,,,,,,,,,,,,,,c,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,	AJJJJJJJJJJJA7JJJF<JFJJJJJJJJAJFJJJJAFJJJJFJAJJJJJ<FJJ<AJJJJJFJJJJJFFFJJAJJFJFJJJJJJ7JAJJJJ<JJJJJF<FFFJJJFJJJJJJJJJ7JJA<JJJJJJJJJJJJJJJJJJJJJA	79	,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,	AJJJJJJJFJFJJJJJJFJJJJ7JFFFAJFJJFJFFJFFAFJFJJJFJJJFJFJJJJJJ7JJJJJAJJFJJJFJJ<JJJ	128	,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,t,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJFAJJ7JJJFJJAJJ<JF<FFJJJJJJJJJFJFJFJJJJAAJJJ<JAJFJJJJJAJ<JJJJFJFJJJFJJJFJJFFFJA77JJJFFFJJJJJ<JJJ<JFAJ7JFJFAJJ<J7JJJJJJ<JFFJ7	76	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,a,,,,,,,	JJJFJJJA<<JFJ<JJJFJFJJJFJFFJAJFJJ7JFJJJJFJFFJJAFJJJ<JJFJJJJJJJJJJJAJJJFF<JJJ	168	,,,,t,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJAFJJJJ<JJJJFJJJFFJJJFJFJFJJ7JJJJ<JJFJFJJJJFJJFFJJJFAJJJJ<JJJJJJ<FJJJFJJFJF<JJJFAFJJFJFJJJJJJ<FJJJJJJJJFJJJFJJJJJJJJJJJJAJJJJ7JJ7JJFJJFJJ<FAJJFJ<JJJJJ<JJFJJJJJJJJ7<F
-Chromosome7	209353097	C	153	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJFFJ7JJFJFJJJFJFFJ<JJJJJJJJJ<JJFFJJFJ7JJJFFJJJJJJJJJJFJJ7JJJFJJ<JJJJJJFFJJJJ<JJJJJFJJJJ<JJJJ<JJJJJ<J<JF7AJJJJJ7FJF7JJJJJ<FJJFJJJJJFJJJJJJJFJJJJJJJ<	82	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,	7JFJJJFJJJJJJJJJJJJJFJJJJFA7JFJFJFJAJJJF<JJJJJJJJFJJFFJJJFFJJJFFAJJJJJJFJAJFJJ7JJJ	134	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJFJFJJFFJJJFJJFJJ<JFJAJFJJAJJJJJJFJJFFJFFJJAJJJJFJFJJJJFJJFJJAJJJFJJFJFFJF<JJAFFAA7JJFFJF7JJFJJJJFJJJ<FJJAJAJJFJAAJJ7JJJJAJJFJJFJF	82	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,	JJJJJJF77AJJFFJJJJAJFJJJJFJJFJAJFFJJJJJJJJJFJJJFFFJJJFJJJJJFJJJJ7JFJJFJFJJJFJFAJJJ	173	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJFJJAJJJAJJJJJ<JJFJAJFJJJFJJJJ<JJFJJJJJJJJJJFJJJJAJFFJJFJJJJ7FJFJJJJJJJJJJJJJJJAJFJJAJJJJFJJJJJJJJJ<JJJJJJFJJJFJJJJJAJJJ7JJJJ7FJJJJJJF<JJJJ7JJJJJJAJJJJJJJJJAJJJJJJJ<JJJJF<
-Chromosome7	209353124	C	154	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JAJJJJJJJFJJFJJJJJJAJJJJJJJJFJJJJFJJJJJJ7JFJJJ<JJJFJJJJJJJJJJJJJJJJJJJJJJJFJ<JJAJJJJ<JJJJJJJJJJJJJ<JJJJJJFAJFAFJJAJJFJJJJJJJJJAJJAJJJJJJJJJJFJJJJAJJJJAJJ<	85	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	<JJJJJJJJAJJJJJJJJJJJJJJJJJJFJAJJJJJAJJJ<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJAJJJJJJ	134	,$,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,g,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	AJJJJJJJJ<JJJJJJJJFJ<JJJJJJJJJJJJJJJJJ7JJJJJJJFJJJJJAJJJFJJJJJJJJJJJJJJJJJJAJFJJJJJFJJFJJJJJJJJJJJJJJJJJJJJJJJJ7JJJJJJJFJJJJJJJJJJJJJF	84	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJAJJFAJFJJFFFJJJJ7JJJJJJJJJFJJJJJJJJJJJJJJFJJJJJFJJJJJJJJJFJJJJJFFJJJ<JAJJJJJJJJJJ	174	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t	FJJFJJJJJJJJJJJFJJJJJJAFJJJJ<JJJJFJJFJJFJJJJJJJJJFJJJJF<JJ<JJJJFJJJJJJJFJJJJJJFJAFJJJJJJJJJJJFJJJJJJJJJJJJJJFJJJJJJJJJAJJJJJJJJ<JJJJJJJJJJJ7JFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJ<J
-Chromosome7	209353129	T	153	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,a,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJJJJJJJJJJJJJJJJFFJJJJJJJJJAJJJJJFJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJFAJJJJJAJJJJJAJJAJJAJJJJJJJJJFJJ7JJJJJJAJJJ<JFJJJJJJJJJJ	84	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JFJJJJJJJJJJJJJJFJJJJJJJJJJFJJJJJJJJJJJJJJJAJJFJJJJFJFJJJJJJJJJ<JJJJJFJJJJFJF<JJ<JJJ	131	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJFJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJAJJJJJJAJJJJJAJJJJJJJJJ<JJJJJJJJJJJJJJJJJJFFJFJJJJJJJJJJJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJ	81	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,	FJJ<JJJ<JFJJJJJJJJJFJJJJJJJJJJJFJJJJJJJJAJJJJJJJJFJJJJJJJJJJJJJJJFJJFJFJFJAJJJJJJ	175	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	AJJFJJ<JJJFJJJJJJJFJJJJFFJJJJJJJJFJJJJFJJJJJJJJ<JJJJJ<J<JJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFFJJJJJJJJJJFJJJJJJJJFJJJJJJJJJJJJAFJFJAJJJJJJJJJJJAJJFJ<JJJJJJJJJJJJJJ7F
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-Chromosome7	209477660	A	0	*	*	1	.	s	0	*	*	1	G	J	3	..G	JJJ
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-Chromosome7	210698453	C	3	T..	AJJ	1	.	J	1	T	<	2	,A	e<	0	*	*
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-Chromosome7	251078580	C	2	A.	os	2	AA	ko	0	*	*	0	*	*	1	.	M
-Chromosome7	251078602	A	2	G.	os	2	GG	sM	0	*	*	0	*	*	1	,	7
-Chromosome7	251078622	G	2	A.	Fs	2	AA	Vf	0	*	*	0	*	*	1	,	J
-Chromosome7	251078629	T	2	.g	oJ	2	gg	JF	0	*	*	0	*	*	1	,	F
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-Chromosome7	251078674	A	2	.g	sJ	2	gg	JJ	0	*	*	0	*	*	1	,	F
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-Chromosome7	251078687	C	2	.*	o5	2	**	55	0	*	*	0	*	*	1	t	J
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-Chromosome7	251078694	C	2	.t	sJ	2	tt	JJ	0	*	*	0	*	*	1	,	J
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-Chromosome7	251371272	A	1	.	J	0	*	*	1	G	J	1	.-1C	J	0	*	*
-Chromosome7	251481271	G	2	t,	<J	0	*	*	1	t	J	1	,	J	0	*	*
-Chromosome7	251544395	C	3	.AT	JJF	5	..TT.	JJJJ7	2	T.	JJ	3	.T.	JJF	0	*	*
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-Chromosome7	251749053	T	0	*	*	3	..C	JJJ	1	C	J	1	.	J	0	*	*
-Chromosome7	251921126	G	2	,-4agct,-4agct	;;	0	*	*	0	*	*	1	,-4agct	;	2	.-4AGCT,-4agct	U;
-Chromosome7	251930527	A	5	,,g,,	JJJAJ	3	,,,	JJJ	1	g	J	2	g,	JJ	2	g,	JJ
-Chromosome7	251930534	T	5	,-1c,-1c,-1c,-1c,-1c	JJJJJ	3	,-1c,-1c,-1c	JJJ	1	,-1c	J	2	,-1c,-1c	JJ	2	,-1c,-1c	JJ
-Chromosome7	252085719	G	1	T	J	3	...	JJJ	2	.*	J5	0	*	*	0	*	*
-Chromosome7	252215512	T	1	a	J	2	,,	JJ	5	,,,,a	JJJAJ	5	,a,a,	JJJJJ	6	a,,,,a	JJJJJF
-Chromosome7	252215946	G	9	T......T.	JFJJJJJJJ	6	..T...	JJJJJJ	16	......T....T....	AJJFJJJJJFJJJJJJ	6	...T.T	JJJJJJ	21	.....T...............	JJJJJJJJJJJJJJJJFJFFJ
-Chromosome7	252215992	C	10	..-1A...+2AA....+1A^:.	JJJJJJJJJA	6	.+2AA....+1A.+1A	JJJJJJ	17	.......+1A..........+2AA	JJJJJJJJJJJJJJJJJ	8	........	JJJJJJJF	21	..........+1A........+1A.+1A..+1A	JJJJJJJJJJJJJJJJJJJJJ
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-Chromosome7	252216589	C	15	A......AA..AA..	JJJJJJJJJJJJJJJ	21	.A.A.A.A.....AA......	JJJJJJJJJJJJJoJJJJJJJ	33	.AA...A.....A....AA.A.A.A....A..A	JFJFJJFFJFFFJJJFJJJJJJJJJJJJFJJJJ	26	....AA......A.A.A....A.AAA	JJJJJFJJJJJJJJJJJJJJJ7JJ<C	21	..A..A..AA...A.A.....	JJJJJJJJJJJFJJJJFJJAJ
-Chromosome7	252216590	C	16	TT......TTT.TT..	JJJJJ7JJJJJJJJJJ	21	.T.T.T.TT....TT......	JJJJJJJJJAJJJsJJJJJJJ	33	TTT...T.T...T...TT.T.T.T....T..TT	JFJFJJJJJ<FAJJJJFJJJJJJJJJJJJJJJ7	26	....TT.....TT.TTTT...T.TTT	JJJJJFJJJJJJJJJFJJJJJ7JJ<C	21	..T..T..TTT..TTT.....	JJJJJJJJJJJJJJJJFJJJJ
-Chromosome7	252216753	G	15	,,,,,,,tt,tt,t,	JFJJJJJJJJJJJJJ	19	t,,t,t,,c,,,,t,,,,,	JJFJJ<JJFJ<JJJJJJJJ	34	t,,,,,t,,,t,,,t,t,,,,tttt,t,t,,,t,	JJJJJJJAAJJJFJFJJJFJ<JJJJJJJJJJFJJ	26	,,t,,,,tt,,,,,t,t,,,,t,ttT	JJJJFJJFAFJJJJJJJJJJJ7JJJJ	21	,,,t,,t,,tc,,,,,t,,,T	FJJJJAJJJJJJJJ<JJFJJJ
-Chromosome7	252217337	A	1	.	s	0	*	*	1	T	J	2	.T	<J	1	G	J
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-Chromosome7	252334901	C	0	*	*	2	..	ss	3	.A.	sss	0	*	*	1	A	o
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-Chromosome7	252574538	C	1	,	F	2	,t	JJ	1	t	J	2	t,	F7	4	,,t,	JJAJ
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-Chromosome7	252574558	A	0	*	*	2	,g	JJ	1	g	J	2	g,	JJ	3	,,,	JJJ
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-Chromosome7	252991379	G	0	*	*	0	*	*	1	.	>	1	.-1T	i	1	.-1T	U
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-Chromosome7	252991486	C	1	,	7	0	*	*	2	.a	sF	3	gg,	J:J	1	g	J
-Chromosome7	252997666	C	0	*	*	0	*	*	1	.	o	2	,+1t.+1T	JA	2	.+1T.	ss
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-Chromosome7	253135212	A	0	*	*	1	.	J	0	*	*	1	G	J	2	.G	J7
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-Chromosome7	253266693	T	0	*	*	1	.-2GC	;	0	*	*	1	.	J	1	.-2GC	;
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-Chromosome7	253559515	C	39	.............T.............TT.T........	JJJJJFJFJJFJJJJJFJJJJJJJJJJJFJJJJJJJJJJ	41	....T....................................	JJJAJJJJAJJJJJJAJJJJJJJJJJJJJJJAAJJJJJFJJ	48	........T...T..........................T........	AJJJJJ<JJJFJJJJJJJJJJFFJJJJAJJJJJJJJJJJJJJJJJJFF	38	.......T..............................	J<JJ<JJJJJJ<JJJJJJJJJFJJJJJJJ<JJJJJFJJ	66	....................................T..T......T......T..T.........	sJJJJJJJJJJ<JJJJFFFFJJJJJJJJJJJJJJFJJJJJJJJJJJFJJFAJJJJJJJJJJJJAJJ
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-Chromosome7	253559539	G	40	.......................T................	JJAJJJJJJJJJ<JJJJJJFJJJJJJJJJJJJJJJAJAFJ	42	.....................A....................	JJFJJFJJ<JJ<AJJJFAJJJFJJJJJJJFFJJFJJJFJJJJ	48	..............................................A^7.	JJJJJJJFJJJAJ<JJJFJJJFJJ7JJJJJ<JJFJJJJJJJJJJJAJA	38	....................................A.	F<JAJJJJAJJFJFFFJJJ<JJJJJJJFJJJJF<JJJJ	67	...A............................A...A...........................A.A	oJFJJFFJJJ7JJAJAFJJJJJJJJJFJAJJ7FJJJJJJJJJJFJJ<<JJFJJF7J<FJJJJJJJ<J
-Chromosome7	253559705	C	9	.$.,.,,,.+1A.-1A	EsJJJJFJJ	14	,,+1a,+1a,,,+1t,,,,,,,.-1A	JJJJJJJJJJJJ<J	5	,$,,..	AJJFs	14	..,,,,,,.,.,,+1a,+1a	FJJJJJJJJ<JJJJ	8	,,.,.A.+1A.+1A	JJJFJJJJ
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-Chromosome7	253559899	C	41	,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,	JFJFJJFJAJAJAJFJJJJJFJFJJJJFJFJJJJJAJ<<JJ	28	,,,,,,t,,,,,,,,,,,,,,,,,,,,,	JJJJ<JJFJFJJJJJJJJJJJJJJJJJJ	47	,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJFJJAJJJJF7JJFJJJ7JJJJFJJJJJFJFJJJJJJJJFJJJ<JJ	32	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	J<JJJJJJJJAJA7FJJ7JJ7FJJJJJFJJJJ	65	,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJJFJFJJFJJFJJJAJFJJJJJFJFJJJ7JJJJJJJJ7JFJJJJJJJAJJJFJJJJJJ
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-Chromosome7	253560054	C	11	....T.....T	JJJJJJFAFJJ	11	....TTT....	JJJsAJJJJJJ	25	T..T.....T...TTT......T..	JJJJJJFJWJJJJJJJsJJJJJJJJ	13	.T..*..T...T.	JJJ\FsJAJFJJs	26	T...T.T.T...TTT..A...T.TT.	JJJJJJJJJJJJJJJJJJJFJ<JJJJ
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-Chromosome7	253661866	C	0	*	*	0	*	*	2	TT	so	3	,,,	JJJ	2	T,	sJ
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-Chromosome7	253870504	A	1	.-8TCGAATGC	:	1	.-8TCGAATGC	:	0	*	*	1	.	A	3	...-8TCGAATGC	FJ:
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-Chromosome7	254191155	T	1	,-1c	J	1	,-1c	A	0	*	*	1	,-1c	J	0	*	*
-Chromosome7	254245703	C	0	*	*	0	*	*	1	.	J	1	T	J	2	.T	JJ
-Chromosome7	254256994	G	1	,-2aa	J	2	,-2aa,-2aa	JJ	1	,	J	0	*	*	1	,-2aa	J
-Chromosome7	254257062	G	1	.-1A	J	1	.-1A	J	1	,	J	1	.-1A	J	0	*	*
-Chromosome7	254260434	A	1	.-3GCT	J	2	.-3GCT.-3GCT	JJ	7	.-3GCT.-3GCT.-3GCT.-3GCT.-3GCT.-3GCT.-3GCT	JJJJJJJ	4	.-3GCT.-3GCT.-3GCT.-3GCT	JJJJ	2	.-3GCT.-3GCT	JJ
-Chromosome7	254262845	T	0	*	*	0	*	*	1	c	J	2	,,	JJ	2	,c	JJ
-Chromosome7	254290328	T	1	.	J	1	.-1G	J	0	*	*	0	*	*	2	,.-1G	oJ
-Chromosome7	254428174	G	0	*	*	2	A.	JJ	1	A	J	0	*	*	1	.	J
-Chromosome7	254428446	A	0	*	*	2	,g	JJ	1	g	J	0	*	*	1	,	J
-Chromosome7	254899978	A	1	.-14ATGCGATTGAGTTG	8	1	,	J	0	*	*	0	*	*	1	.-14ATGCGATTGAGTTG	9
-Chromosome7	254900052	T	1	.-1A	s	1	,	A	0	*	*	0	*	*	1	.-1A	s
-Chromosome7	254909044	A	1	.	J	2	G.	JJ	0	*	*	1	G	J	3	..G	JJJ
-Chromosome7	254909087	C	1	.	F	2	A.	JF	0	*	*	2	AA	ss	3	.AA	<J7
-Chromosome7	254909099	G	1	.	F	2	C.	JJ	0	*	*	2	CC	ss	3	.CC	FJJ
-Chromosome7	254909107	T	1	.	J	2	C.	JF	0	*	*	2	CC	oo	3	.CC	<JJ
-Chromosome7	254909119	A	1	.	J	2	G.	^F	0	*	*	2	GG	os	3	..G	AF7
-Chromosome7	254924188	A	1	g	J	2	g.	JJ	0	*	*	2	g,	J7	1	.	F
-Chromosome7	255230231	G	0	*	*	1	.-2GA	I	1	.-2GA	I	0	*	*	1	.-2GA	I
-Chromosome7	255266781	C	0	*	*	0	*	*	1	G	J	3	GG.	JMn	1	.	n
-Chromosome7	255326719	G	1	A	F	1	.	J	2	A.	J<	0	*	*	0	*	*
-Chromosome7	255343423	G	1	.	e	2	.c	s>	0	*	*	1	c	J	0	*	*
-Chromosome7	255343438	C	1	T	s	2	T,	sF	0	*	*	1	,	J	0	*	*
-Chromosome7	255343450	C	1	.	s	2	.g	sJ	0	*	*	1	g	J	0	*	*
-Chromosome7	255343453	G	1	.	s	2	.c	sF	0	*	*	1	c	J	0	*	*
-Chromosome7	255343464	C	1	T	o	2	T,	sJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343468	T	1	.	o	2	.c	sJ	0	*	*	1	c	J	0	*	*
-Chromosome7	255343492	A	1	g	J	2	,g	AJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343504	A	1	g	J	2	,g	JJ	0	*	*	1	,	<	0	*	*
-Chromosome7	255343528	A	1	g	J	2	,g	FJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343531	G	1	a	J	2	,a	JJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343534	A	1	g	J	2	,g	JJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255343551	C	1	t	A	2	,t	JJ	0	*	*	1	,	J	0	*	*
-Chromosome7	255348081	A	1	T	J	0	*	*	1	.	J	0	*	*	3	..G	JJJ
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-Chromosome7	255348107	G	1	.	J	0	*	*	1	A	J	0	*	*	3	A..	JJJ
-Chromosome7	255348148	T	1	.	o	0	*	*	1	.-1G	R	0	*	*	3	.-1G..	ooj
-Chromosome7	255348171	G	1	.	o	0	*	*	1	C	k	0	*	*	3	C..	kss
-Chromosome7	255348197	C	1	.	s	0	*	*	1	A	`	0	*	*	3	A..	sse
-Chromosome7	255348234	G	1	A	T	0	*	*	1	t	J	0	*	*	3	t,t	JJJ
-Chromosome7	255348272	A	1	,	J	0	*	*	1	t	F	0	*	*	3	t,,	JJJ
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-Chromosome7	255740117	A	0	*	*	1	G	s	2	.G	ss	1	.	s	0	*	*
-Chromosome7	255740130	C	0	*	*	1	.	o	2	T.	ss	1	A	s	0	*	*
-Chromosome7	255817351	T	2	..	JJ	0	*	*	0	*	*	2	C.	<J	1	C	J
-Chromosome7	255858923	G	0	*	*	2	,,	JJ	7	a,,,,,,	JJFJJJJ	3	,,a	AJJ	4	,,,a	JJJJ
-Chromosome7	255876600	T	1	C	s	1	.	s	2	C.	os	2	.C	ss	2	C.	os
-Chromosome7	256429474	A	0	*	*	1	.	J	2	.G	JJ	0	*	*	1	G	J
-Chromosome7	256429497	T	0	*	*	1	.	J	2	.C	<U	0	*	*	1	C	V
-Chromosome7	256429519	C	0	*	*	1	.	J	2	.A	Fs	0	*	*	1	A	s
-Chromosome7	256429525	C	0	*	*	1	.	F	2	.A	Jk	0	*	*	1	A	o
-Chromosome7	256429530	T	0	*	*	1	.	J	2	.C	Js	0	*	*	1	C	s
-Chromosome7	256429531	C	0	*	*	1	.	J	2	.T	Js	0	*	*	1	T	s
-Chromosome7	256452248	T	0	*	*	1	,	F	2	,c	JJ	0	*	*	2	cc	FJ
-Chromosome7	256674199	A	0	*	*	3	,gg	JJJ	1	g	J	4	,gg,	JFJJ	1	,	J
-Chromosome7	256724978	T	0	*	*	0	*	*	1	,-1c	?	3	.,-1c.-1C	7GA	1	.	J
-Chromosome7	256725346	T	0	*	*	1	,	F	0	*	*	2	,a	JF	2	A,	oF
-Chromosome7	256728403	T	0	*	*	0	*	*	1	.	s	1	A	J	2	.A	JJ
-Chromosome7	256830964	T	0	*	*	0	*	*	2	.-1G.	JJ	1	.	J	1	.-1G	J
-Chromosome7	256831003	T	0	*	*	0	*	*	2	C.	JJ	1	.	<	1	C	J
-Chromosome7	256831040	G	0	*	*	0	*	*	2	.-12CGATTTGGGGGA.	Js	1	.	J	1	.-12CGATTTGGGGGA	J
-Chromosome7	256848198	G	1	,-1t	F	0	*	*	1	,-1t	J	1	.	<	0	*	*
-Chromosome7	256852046	T	0	*	*	1	A	J	2	.C	JJ	0	*	*	1	.	J
-Chromosome7	256878006	G	2	AA	JJ	1	.	J	0	*	*	0	*	*	2	.A	JJ
-Chromosome7	256878018	G	2	A.	JJ	1	.	J	0	*	*	0	*	*	2	.A	JJ
-Chromosome7	256878060	G	2	A.	JJ	1	.	J	0	*	*	0	*	*	2	.T	FJ
-Chromosome7	256878189	T	2	a,	JJ	1	,	F	0	*	*	0	*	*	1	a	F
-Chromosome7	257114474	A	1	.-3GAC	9	1	.	J	2	..-3GAC	J7	0	*	*	2	.-3GAC.	9J
-Chromosome7	257123327	G	0	*	*	3	A..	FJJ	0	*	*	1	.	J	1	A	J
-Chromosome7	257167771	C	0	*	*	0	*	*	1	.	s	1	T	s	2	.T	sV
-Chromosome7	257320032	A	0	*	*	1	G	s	2	.G	`e	1	.	F	0	*	*
-Chromosome7	257401572	C	0	*	*	2	t,	F7	3	,t,	JAJ	1	t	J	0	*	*
-Chromosome7	257401583	T	0	*	*	2	c,	FJ	2	,,	J7	1	c	F	0	*	*
-Chromosome7	257440112	G	1	,-30tctgggccaccaatttaagccatgcatcat	5	0	*	*	1	,	J	1	t	J	0	*	*
-Chromosome7	257445151	G	1	,-1a	J	0	*	*	2	,a	JF	0	*	*	1	,	J
-Chromosome7	257483171	A	1	g	J	0	*	*	4	g,,,	JJJJ	3	,,g	JJJ	3	,,,	JJJ
-Chromosome7	257629558	C	1	.-3TTA	s	0	*	*	2	..	Js	0	*	*	1	.-3TTA	o
-Chromosome7	257629688	A	1	,-1t	J	0	*	*	2	,,	JJ	0	*	*	1	,-1t	J
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-Chromosome7	257659822	G	0	*	*	0	*	*	1	.-16GTACTCTCTGCACCTC	6	2	.-16GTACTCTCTGCACCTC.-16GTACTCTCTGCACCTC	s6	1	.	J
-Chromosome7	257686469	C	2	GG	JJ	0	*	*	0	*	*	2	.G	FJ	1	.	J
-Chromosome7	257686679	G	2	t,	JJ	0	*	*	0	*	*	2	t,	JJ	1	,	J
-Chromosome7	257686694	A	2	cc	JJ	0	*	*	0	*	*	2	c,	JJ	1	,	J
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-Chromosome7	257778951	G	0	*	*	2	,,	JF	0	*	*	1	.-3TAC	s	1	.-3TAC	J
-Chromosome7	257812157	G	1	,	J	2	,t	JJ	0	*	*	1	t	J	0	*	*
-Chromosome7	257939100	T	0	*	*	2	..	ss	3	C$,,	JJJ	1	a	J	0	*	*
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-Chromosome7	257957276	G	0	*	*	2	a,	7A	1	a	J	0	*	*	1	,	A
-Chromosome7	258112294	G	0	*	*	3	,t.	JJs	0	*	*	1	T	s	4	,,,,	JJJF
-Chromosome7	258122794	G	10	..TT......	JJJJJJJJJJ	7	T......	JJFFJJJ	11	T..........	JJJJJJJJJJJ	5	.....	FJAJJ	7	......T	JJJJJJJ
-Chromosome7	258122956	A	9	,,gg,,,gg	JFAJJAJJA	6	gg,,gg	JJJAJJ	11	,,ggggggggg	JJJJJJ<JFFF	5	g,gg,	FJFJJ	7	gg,ggg,	JJJAJJJ
-Chromosome7	258276844	A	0	*	*	0	*	*	2	GG	JJ	4	...G	sFJJ	1	.	s
-Chromosome7	258276930	G	0	*	*	1	,	F	2	,a	FJ	4	,.,a	JsJJ	0	*	*
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-Chromosome7	258295349	A	0	*	*	1	G	\	2	G.	J7	0	*	*	1	.	<
-Chromosome7	258331069	C	2	T.	JJ	1	T	J	0	*	*	0	*	*	2	T.	JJ
-Chromosome7	258331102	C	2	t,	>J	1	,	J	0	*	*	0	*	*	2	t,	5A
-Chromosome7	258331138	T	2	g,	JJ	1	,	<	0	*	*	0	*	*	2	g,	JF
-Chromosome7	258338969	T	1	.-7TGCGGTC	:	0	*	*	0	*	*	1	.-7TGCGGTC	:	2	.-7TGCGGTC.-7TGCGGTC	::
-Chromosome7	258371706	G	0	*	*	1	.-1A	J	1	.-1A	F	1	.-1A	J	0	*	*
-Chromosome7	258587112	A	7	G,,,,,,	jJJJFJJ	4	.,,,	sJJJ	13	..G.G,,,,,,,,	jRjooJJJJJJJJ	13	G..G.G,,,,,,,	sR`sssJJJJJJJ	12	.G...,,,,,,,	`ssssJ<JJJJA
-Chromosome7	258589562	T	0	*	*	2	.c	oJ	2	,,	JJ	1	c	J	0	*	*
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-Chromosome7	258702215	A	0	*	*	3	.G.	7FJ	0	*	*	1	.	F	1	G	J
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-Chromosome7	258722820	G	0	*	*	3	.,A	ksF	0	*	*	4	t..,	JsAJ	1	.	o
-Chromosome7	258728719	G	0	*	*	0	*	*	3	CC.	sss	3	.C.	sRs	1	.	s
-Chromosome7	258728764	C	0	*	*	0	*	*	3	aaa	JJF	3	,a,	JFJ	1	,	J
-Chromosome7	258728793	T	0	*	*	0	*	*	3	ccc	CCJ	3	cc,	CFJ	1	,	J
-Chromosome7	258728794	T	0	*	*	0	*	*	3	ccc	CCA	3	ccg	CAJ	1	g	J
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-Chromosome7	258930042	C	1	.-1G	J	1	.-1G	J	0	*	*	1	.-1G	F	1	.-1G	J
-Chromosome7	258930893	G	2	a,	JJ	1	c	J	0	*	*	1	,	J	0	*	*
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-Chromosome7	301181431	G	16	,,,,,,,,,,,,,,,,	JJFFJJJJJJJJJJJA	12	,,,a,,,,,,,,	JJJJJJJJJJJJ	13	a,,,,,,,,,,,,	9JJJFJJJJJJJJ	12	,,,,,a,,,a,,	JFJJJJJJJJJJ	20	,,,,,a,,,,,,,,,,,,,,	JJFJJJFJJJFJJJJJJJJJ
-Chromosome7	301188415	G	2	a,	A7	0	*	*	0	*	*	1	,	J	1	a	F
-Chromosome7	301212284	C	2	t.	FJ	2	T.	jF	0	*	*	1	T	s	1	.	A
-Chromosome7	301212350	C	2	t.	JJ	2	t.	JJ	0	*	*	1	.	s	0	*	*
-Chromosome7	301245506	G	0	*	*	1	A	J	2	.A	ns	1	.	s	0	*	*
-Chromosome7	301439989	T	0	*	*	3	CC.	sss	1	c	J	0	*	*	2	Ca	oJ
-Chromosome7	301439994	A	0	*	*	3	.G.	sss	1	,	J	0	*	*	2	Gg	sJ
-Chromosome7	301440003	G	0	*	*	3	..A	sss	1	a	J	0	*	*	2	.,	sJ
-Chromosome7	301440014	A	0	*	*	3	GGT	sss	1	g	J	0	*	*	2	.g	jJ
-Chromosome7	301440031	C	0	*	*	3	G..	ss[	1	,	J	0	*	*	2	,t	JJ
-Chromosome7	301440039	C	0	*	*	3	..t	ssJ	1	,	J	0	*	*	2	,t	JJ
-Chromosome7	301497254	C	0	*	*	2	A.	JJ	0	*	*	3	TTT	JFJ	3	...	Fsj
-Chromosome7	301497580	T	0	*	*	2	,c	JJ	0	*	*	3	aaa	JJJ	1	,	F
-Chromosome7	301498098	A	2	cc	<A	0	*	*	0	*	*	4	C...	s99A	1	,$	>
-Chromosome7	301524162	C	0	*	*	2	T.	JJ	0	*	*	1	.	J	2	.T	JJ
-Chromosome7	301524325	G	0	*	*	2	t,	FJ	0	*	*	1	,	J	2	,t	JF
-Chromosome7	301548618	C	0	*	*	1	,	F	1	T	s	3	,.t	JsJ	0	*	*
-Chromosome7	301548630	A	0	*	*	1	,	F	1	G	s	2	G,	sJ	0	*	*
-Chromosome7	301606890	T	1	,	F	0	*	*	1	a	F	0	*	*	2	,a	JF
-Chromosome7	301606926	C	1	,-1t	J	0	*	*	1	,-1t	7	0	*	*	2	,-1t,-1t	JJ
-Chromosome7	301654611	G	0	*	*	0	*	*	2	..	Js	3	A..	JsJ	2	A.	7J
-Chromosome7	301765743	A	2	,,-1t	JF	1	t	J	0	*	*	0	*	*	1	,	J
-Chromosome7	301775567	T	1	.-1G	o	0	*	*	1	,-1g	J	3	.,-1g,	sAJ	0	*	*
-Chromosome7	301775578	C	2	.+1T,+1t	JJ	0	*	*	1	,+1t	J	3	.,+1t,	sAF	0	*	*
-Chromosome7	301775584	C	1	.-4GCTA	M	0	*	*	1	,-4gcta	7	2	.,-4gcta	S;	0	*	*
-Chromosome7	301790232	A	1	c	J	0	*	*	0	*	*	1	g	J	2	cg	JJ
-Chromosome7	301807681	C	1	,+1t	J	0	*	*	2	.+1T,+1t	5J	1	t	J	0	*	*
-Chromosome7	301839907	T	2	.C	JF	1	C	J	0	*	*	1	.	J	0	*	*
-Chromosome7	301840060	T	2	g,	JJ	1	,	J	0	*	*	1	g	J	0	*	*
-Chromosome7	301902772	G	1	.-2AA	A	0	*	*	1	.-1A	J	1	.-1A	s	1	.	J
-Chromosome7	302047409	C	0	*	*	2	,T	Jj	0	*	*	1	.	s	1	t	J
-Chromosome7	302051155	C	1	.+2AA	o	2	.+2AG.+2AG	JJ	2	.+2AG.+1A	JJ	0	*	*	0	*	*
-Chromosome7	302051181	A	2	Cc	sJ	2	..	ss	2	.C	sj	0	*	*	0	*	*
-Chromosome7	302051230	C	2	Aa	sJ	2	..	ss	2	.A	so	0	*	*	0	*	*
-Chromosome7	302051262	C	2	tt	JJ	2	,,	JJ	2	,t	JF	0	*	*	0	*	*
-Chromosome7	302051352	G	2	.A	JJ	0	*	*	0	*	*	2	.A	JJ	1	.	J
-Chromosome7	302051365	T	2	.A	JJ	0	*	*	0	*	*	2	.A	JJ	1	.	J
-Chromosome7	302051370	C	2	.G	JJ	0	*	*	0	*	*	2	TG	JJ	1	.	J
-Chromosome7	302051375	G	2	.C	JF	0	*	*	0	*	*	2	.C	JJ	1	.	J
-Chromosome7	302051388	G	1	A	J	0	*	*	0	*	*	2	A.	FJ	1	.	J
-Chromosome7	302051427	A	3	.T.	JJJ	0	*	*	0	*	*	2	.T	JJ	1	.	J
-Chromosome7	302051559	T	3	.,g	oJ7	0	*	*	0	*	*	2	g,	JJ	1	,	J
-Chromosome7	302053781	T	2	..	F7	0	*	*	2	.C	JJ	0	*	*	1	C	J
-Chromosome7	302060228	A	1	,-11gggccgggctg	J	1	.	9	0	*	*	1	,-11gggccgggctg	J	0	*	*
-Chromosome7	302061974	G	2	.-1T.-1T	JJ	1	.-1T	J	0	*	*	2	..-1T	JJ	1	.-1T	J
-Chromosome7	302066875	T	3	.$,C	jJs	1	C	J	0	*	*	1	.	e	0	*	*
-Chromosome7	302067145	G	1	.	F	1	T	<	0	*	*	0	*	*	2	.T	FJ
-Chromosome7	302073124	C	0	*	*	1	,-4taag	J	1	G	s	0	*	*	1	,	J
-Chromosome7	302073163	G	0	*	*	1	a	J	2	.+3TCA,	oJ	0	*	*	1	,	J
-Chromosome7	302073191	A	0	*	*	1	,	J	2	.g	sJ	1	g	A	0	*	*
-Chromosome7	302100175	C	0	*	*	1	.-4GCTA	E	1	.-4GCTA	5	0	*	*	1	.-4GCTA	H
-Chromosome7	302178668	T	0	*	*	1	.-3GAA	J	1	.-3GAA	J	0	*	*	1	.-3GAA	J
-Chromosome7	302198727	A	0	*	*	2	CC	JJ	4	C...	JAAA	6	CC....	FJAAAA	2	..	AA
-Chromosome7	302225172	T	0	*	*	0	*	*	3	G,,	sJJ	1	G	s	1	,	J
-Chromosome7	302232479	T	1	c	J	0	*	*	1	.	s	0	*	*	2	c,	JA
-Chromosome7	302267865	A	1	,-2ct	J	0	*	*	0	*	*	1	,-2ct	J	1	,	<
-Chromosome7	302307654	G	1	A	6	2	..	JJ	0	*	*	0	*	*	2	.A	s6
-Chromosome7	302517746	G	0	*	*	2	.-3CCC.-3CCC	JJ	1	.-3CCC	J	0	*	*	4	...-3CCC.-3CCC	J<JJ
-Chromosome7	302517763	A	0	*	*	2	.-3GCT.-3GCT	JJ	1	.-3GCT	J	0	*	*	3	.$.-3GCT.-3GCT	DJF
-Chromosome7	302517777	A	0	*	*	2	.+1T.+1T	>>	1	.+1T	>	0	*	*	2	.+1T.+1T	><
-Chromosome7	302517810	T	0	*	*	2	CC	os	2	C,	sJ	0	*	*	4	CC,,	okJJ
-Chromosome7	302517811	A	0	*	*	2	TT	so	2	Tg	sJ	0	*	*	4	TTgg	s`JJ
-Chromosome7	302587874	C	5	T....	JJ<oA	8	..TT.TGT	JJAJJFsJ	6	T.T..T	JFJ<F<	3	...	JJJ	3	.TT	J<J
-Chromosome7	302751881	T	1	.	J	2	.A	JJ	3	..C	7oJ	0	*	*	2	.C	7J
-Chromosome7	302864739	T	0	*	*	4	,$,,c	AJJJ	1	c	J	0	*	*	1	,	J
-Chromosome7	302864755	G	0	*	*	3	,,a	JJJ	1	a	J	0	*	*	1	,	J
-Chromosome7	302951458	A	3	,,,	J7J	3	g,,	JFJ	4	g,,,	JJJJ	7	,,,g,,g	JJA7FJJ	9	,,,,,,g,,	JJJJJJJJJ
-Chromosome7	302951530	C	3	a,,	JJJ	3	a,,	JJJ	4	a,,,	JJJJ	7	,,,a,,a	JJJJJJJ	8	,,a,,,a,	JJJJJJJJ
-Chromosome7	303014148	T	1	g	7	1	,	J	0	*	*	2	,G	JF	0	*	*
-Chromosome7	303084658	G	0	*	*	0	*	*	2	.A	JJ	1	.	J	1	A	J
-Chromosome7	303084739	T	0	*	*	0	*	*	2	.G	os	1	.	s	1	G	J
-Chromosome7	303153086	C	1	,-2at	J	0	*	*	0	*	*	1	.	s	1	,-2at	J
-Chromosome7	303228613	C	3	...	JJJ	0	*	*	1	T	J	2	T.	JJ	5	.TTTT	AJJJJ
-Chromosome7	303315454	G	0	*	*	2	.c	oJ	1	,	F	1	c	J	0	*	*
-Chromosome7	303315463	A	0	*	*	2	.g	sJ	1	,	J	1	g	J	0	*	*
-Chromosome7	303315489	C	0	*	*	2	,a	JJ	1	,	J	1	a	J	0	*	*
-Chromosome7	303344962	C	1	.	J	1	,-1t	s	1	.-1T	J	0	*	*	1	T	J
-Chromosome7	303561466	C	1	.-1A	F	0	*	*	2	.-1A.+1A	JJ	1	.	F	0	*	*
-Chromosome7	303583749	T	2	G.	JA	1	.	J	1	G	J	0	*	*	0	*	*
-Chromosome7	303592219	C	1	.-1A	s	1	.-1A	s	0	*	*	1	.	e	0	*	*
-Chromosome7	303592248	G	2	.+1A,+1a	JJ	2	.+1A,+1a	JJ	0	*	*	1	.+1A	k	0	*	*
-Chromosome7	303632751	A	0	*	*	1	g	J	1	.	R	0	*	*	2	,g	<J
-Chromosome7	303727273	G	0	*	*	1	A	V	1	.	s	0	*	*	2	A.	\o
-Chromosome7	303737176	C	1	G	F	1	.	<	0	*	*	0	*	*	2	G.	JJ
-Chromosome7	303827664	G	2	T.	J<	1	A	J	1	T	J	2	..	JJ	2	T.	FJ
-Chromosome7	303828066	G	2	,a	JJ	0	*	*	1	a	J	2	,,	JJ	3	aa,	JAJ
-Chromosome7	303828087	T	2	,a	<J	0	*	*	1	a	J	2	,,	JJ	3	aa,	JJJ
-Chromosome7	303828132	C	2	,t	JJ	0	*	*	1	t	J	2	,,	JJ	2	,t	JF
-Chromosome7	303828156	G	2	,t	JJ	0	*	*	1	t	J	2	,,	JJ	2	t,	JF
-Chromosome7	303932204	T	6	,,,,,,	JJJJAJ	0	*	*	0	*	*	2	c,	JJ	3	,,c	<JJ
-Chromosome7	304005867	A	1	G	s	0	*	*	2	.g	ss	0	*	*	1	,	<
-Chromosome7	304030217	G	2	.C	JF	1	.	J	2	.C	s7	0	*	*	0	*	*
-Chromosome7	304074310	A	1	.-3AGC	:	1	.-3AGC	:	2	.-3AGC.-3AGC	SS	0	*	*	0	*	*
-Chromosome7	304147109	C	2	.T	ss	0	*	*	1	t	J	2	t,	JF	2	,,	JJ
-Chromosome7	304148495	G	1	a	J	2	.,	JJ	2	t,	JA	0	*	*	0	*	*
-Chromosome7	304448917	T	1	,	J	0	*	*	1	g	J	3	gg,	JJJ	0	*	*
-Chromosome7	304482703	C	0	*	*	1	.-2CA	;	0	*	*	1	.-2CA	;	1	.-2CA	;
-Chromosome7	304487158	A	2	.G	7J	1	.	F	0	*	*	0	*	*	1	G	J
-Chromosome7	304503657	A	0	*	*	2	.C	Js	1	C	F	1	.	F	0	*	*
-Chromosome7	304503707	A	0	*	*	2	gt	JJ	1	g	J	1	,	J	0	*	*
-Chromosome7	304554563	C	0	*	*	1	,-1a	J	0	*	*	1	.-1A	7	1	.-1A	o
-Chromosome7	304554674	C	1	G	G	0	*	*	0	*	*	1	,	J	2	,G	JJ
-Chromosome7	304554685	G	1	T	J	0	*	*	0	*	*	1	,	J	2	,T	JJ
-Chromosome7	304554686	T	1	C	J	0	*	*	0	*	*	1	a	F	2	aC	JJ
-Chromosome7	304554699	T	1	.-6AAATGA	5	0	*	*	0	*	*	1	,	J	2	,.-6AAATGA	A5
-Chromosome7	304554814	A	2	.t	FJ	0	*	*	0	*	*	1	.	F	1	t	J
-Chromosome7	304554815	G	2	.c	JF	0	*	*	0	*	*	1	.	F	1	c	J
-Chromosome7	304554842	C	2	.a	JJ	0	*	*	0	*	*	1	.	<	1	a	F
-Chromosome7	304554843	A	2	.t	J7	0	*	*	0	*	*	1	.	A	1	t	J
-Chromosome7	304554858	T	2	.c	JF	0	*	*	0	*	*	1	.	J	1	c	J
-Chromosome7	304564618	C	1	t	J	0	*	*	2	t,	JJ	1	,	J	0	*	*
-Chromosome7	304589857	A	2	g,	JJ	0	*	*	1	g	J	3	,,g	JJJ	1	,	J
-Chromosome7	304589866	T	2	c,	JJ	0	*	*	1	c	F	3	,,c	JFJ	1	,	J
-Chromosome7	304589881	T	2	c,	JA	0	*	*	1	c	J	3	,,c	JFJ	1	,	J
-Chromosome7	304592022	C	0	*	*	1	.	s	1	T	k	0	*	*	3	..T	sss
-Chromosome7	304612477	A	1	,-1g	J	1	.-1G	s	0	*	*	1	.-1G	V	0	*	*
-Chromosome7	304612531	G	1	,-5acgcc	;	1	.-5ACGCC	U	0	*	*	1	,	J	0	*	*
-Chromosome7	304676954	A	1	T	7	0	*	*	3	,.T	sFF	2	,.	sa	2	.+1T.	FJ
-Chromosome7	304808634	C	2	T.	JJ	0	*	*	0	*	*	2	..	JJ	2	TT	JJ
-Chromosome7	304890206	T	2	,c	FJ	0	*	*	0	*	*	1	.	o	1	c	J
-Chromosome7	304890237	A	2	,t	AF	0	*	*	0	*	*	1	.	s	1	t	J
-Chromosome7	304891606	T	0	*	*	1	.-1C	G	1	.-1C	G	1	.-1C	G	0	*	*
-Chromosome7	304913861	C	2	.T	JJ	0	*	*	0	*	*	1	.	J	1	T	J
-Chromosome7	304913944	G	2	.A	JJ	0	*	*	0	*	*	1	.	J	1	A	J
-Chromosome7	304913947	G	2	.-1T.-1T	JJ	0	*	*	0	*	*	1	.	J	1	.-1T	J
-Chromosome7	304913966	G	2	.A	JJ	0	*	*	0	*	*	1	.	J	1	A	J
-Chromosome7	304913971	C	2	.T	JF	0	*	*	0	*	*	1	.	J	1	T	J
-Chromosome7	304914151	A	2	,,-1g	FJ	0	*	*	0	*	*	2	.,	oJ	1	,-1g	J
-Chromosome7	304914152	G	2	,*	JJ	0	*	*	0	*	*	2	.,	oJ	1	*	J
-Chromosome7	304914169	G	2	,+1t,+1t	JF	0	*	*	0	*	*	2	,+1t,	7J	1	,+1t	J
-Chromosome7	304914184	A	2	,g	JJ	0	*	*	0	*	*	2	,,	FJ	1	g	J
-Chromosome7	304966252	T	1	C	J	1	.	s	0	*	*	0	*	*	2	C^].	JA
-Chromosome7	304966328	T	1	C	s	1	.	s	0	*	*	0	*	*	2	C.	sj
-Chromosome7	304966354	C	1	t	J	1	,	J	0	*	*	0	*	*	2	.t	sJ
-Chromosome7	304967611	C	0	*	*	2	A.	FJ	1	.	J	0	*	*	1	A	R
-Chromosome7	304967658	C	0	*	*	2	T,	sJ	1	t	A	0	*	*	1	,	J
-Chromosome7	304967663	G	0	*	*	2	A,	sJ	1	a	F	0	*	*	1	,	J
-Chromosome7	305057345	A	1	.	J	2	.G	JJ	0	*	*	0	*	*	1	G	J
-Chromosome7	305122959	C	0	*	*	2	,,	JJ	2	T.	Jo	0	*	*	1	g	9
-Chromosome7	305361973	T	1	.	J	2	C.	AF	0	*	*	0	*	*	1	C	J
-Chromosome7	305563585	A	0	*	*	2	C.	JJ	1	.	s	0	*	*	1	C	J
-Chromosome7	305563645	C	0	*	*	2	T.	AJ	1	.	s	0	*	*	1	T	7
-Chromosome7	305563762	G	0	*	*	2	,t	<F	2	,A	Jo	0	*	*	1	,	J
-Chromosome7	305563957	G	0	*	*	1	.	J	2	.A	JJ	1	A	F	0	*	*
-Chromosome7	305563984	G	0	*	*	2	..-6AGGAGA	J5	3	..-6AGGAGA.	F5F	1	.	A	0	*	*
-Chromosome7	305658748	A	0	*	*	0	*	*	3	G.G	JJJ	1	.	f	2	G.	AJ
-Chromosome7	305658798	A	0	*	*	0	*	*	3	.G.	oas	1	G	f	2	..	es
-Chromosome7	305667525	C	0	*	*	0	*	*	5	..TTT	JJJJJ	3	T..	Jss	1	.	J
-Chromosome7	305667558	T	0	*	*	0	*	*	5	GG...	ossss	3	.GG	sss	1	.	s
-Chromosome7	305667573	C	0	*	*	0	*	*	5	..TTT	oosos	3	T..	soo	1	.	s
-Chromosome7	305667774	C	0	*	*	1	.-3TGT	J	1	.-6TGTTGT	J	0	*	*	1	.+9TGTTGTTGT	J
-Chromosome7	305696043	T	0	*	*	0	*	*	1	g	J	2	g,	JA	1	,	J
-Chromosome7	305808465	G	0	*	*	1	.	J	2	.A	JJ	0	*	*	2	A.	JJ
-Chromosome7	305808492	G	0	*	*	1	C	J	2	..	JJ	0	*	*	2	.C	JJ
-Chromosome7	305808530	G	0	*	*	1	A	J	2	..	JF	0	*	*	2	.A	JJ
-Chromosome7	305808575	G	0	*	*	1	.	J	2	.A	J<	0	*	*	2	A.	<J
-Chromosome7	305808591	C	0	*	*	1	T	J	1	.	J	0	*	*	2	.T	J<
-Chromosome7	305808779	T	0	*	*	1	c	J	2	,,	JF	0	*	*	2	,c	JJ
-Chromosome7	305809526	C	2	TT	JJ	0	*	*	0	*	*	1	.	J	2	.T	J7
-Chromosome7	305809645	C	2	TT	FJ	0	*	*	0	*	*	1	.	J	2	.T	J<
-Chromosome7	305809836	G	2	aa	FF	1	.	e	0	*	*	0	*	*	2	,a	AJ
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-Chromosome7	312096591	G	1	,	J	2	.+2AA,	gJ	2	,+2aa,	DJ	0	*	*	0	*	*
-Chromosome7	312096608	T	1	,	J	3	C,C	sJJ	2	c,	JJ	1	C	W	0	*	*
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-Chromosome7	312096635	A	1	,	J	3	T,T	sJJ	2	t,	JJ	1	T	\	0	*	*
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-Chromosome7	312096645	T	1	,	J	3	C,C	sJs	2	c,	JJ	1	C	e	0	*	*
-Chromosome7	312096657	A	1	,	J	3	.-1G,.-1G	eJg	2	,-1g,	DJ	1	.-1G	O	0	*	*
-Chromosome7	312096658	G	1	,	J	3	*,*	gJg	2	*,	DJ	1	*	b	0	*	*
-Chromosome7	312096666	T	0	*	*	3	G,G	sJs	2	g,	JJ	1	G	s	0	*	*
-Chromosome7	312096671	A	1	,	J	3	C,C	sJo	2	c,	JJ	1	C	e	0	*	*
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-Chromosome7	312125558	G	0	*	*	0	*	*	2	.A	sJ	1	.	J	3	.A.	sJs
-Chromosome7	312225728	A	0	*	*	0	*	*	1	.-1T	F	1	T	J	1	.	F
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-Chromosome7	312333304	T	4	....	JJJJ	14	.......A......	JAJJJJJJJF<JJJ	20	......A..A.....A....	JJJJJJJJJFJJJJJJJAJJ	14	....A.A.......	JJJJJJFJJJJFJJ	21	A...A..............AA	JJJJFFJJFJ<JJJJJJJJJJ
-Chromosome7	312333351	C	4	.A.A	nJJF	13	.............	JJJJJJJJJJJJJ	21	.........A...........	JJJJJJJAJJAJJAFJJJJJJ	14	...G...A.A....	JJJJsJFJJJJJJJ	20	....A.A.A....A......	JJJFJFJJFJFJJAJJFJoJ
-Chromosome7	312333449	T	4	,c,,	<JJA	14	,,,,,,,,,,c,,,	JJAJJJ<JJJJJJJ	21	,,,c,,,,,c,c,,,,,,c,,	JJJJJJJJJJJJJAJJFJJJJ	14	,,c,,,,c,c,,c,	JJJJFJJJJJAFJJ	21	,,,ccc,ccc,,,,c,,c,,,	JJJAJJJJJJJFJJFJJJJ<J
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-Chromosome7	312333499	G	4	,,,,	AJJJ	13	,,a,,,a,,,,,,	JJJJJJJ<JJJJJ	21	,,,,,,,,,,,,,,,,,a,a,	JJJJJJJJFJJJJJJJFJ<JJ	13	,,,,,,,a,,,,,	JJJFJJJJJJJJJ	20	,a,,,,,,,a,,,,,,,,a,	JJ<JFJJJJJ<JJ<JJJJJJ
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-Chromosome7	312338746	A	8	gggg,ggg	JJJJJJJJ	6	,g,ggg	JJJJFJ	4	ggg,	JJJJ	2	gg	JJ	6	,ggggg	JJJJJF
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-Chromosome7	315290130	C	0	*	*	0	*	*	1	.	J	1	.-7ATAACTT	5	1	.-7ATAACTT	5
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-Chromosome7	320169152	G	2	a,	JJ	0	*	*	1	,	F	0	*	*	1	a	F
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-Chromosome7	320169194	T	2	c,	JJ	0	*	*	1	,	J	0	*	*	1	c	J
-Chromosome7	320169197	C	2	,t	JJ	0	*	*	1	t	J	0	*	*	1	,	J
-Chromosome7	320169211	A	2	g,	JJ	0	*	*	1	,	F	0	*	*	1	g	J
-Chromosome7	320169212	T	2	g,	JJ	0	*	*	1	,	J	0	*	*	1	g	J
-Chromosome7	320169234	T	2	a,	JJ	0	*	*	1	,	<	0	*	*	1	a	J
-Chromosome7	320169241	G	2	c,	JJ	0	*	*	1	,	F	0	*	*	1	c	J
-Chromosome7	320929447	A	2	..	FF	4	...G	7JJJ	3	G..	JJJ	11	.GG..G...G.	JJJFAJA<JFA	0	*	*
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-Chromosome7	320945536	C	0	*	*	0	*	*	1	T	[	2	.A	os	1	.	s
-Chromosome7	320963873	A	1	,	<	0	*	*	1	,-1c	I	0	*	*	1	,-1c	J
-Chromosome7	320968950	C	1	.-1A	A	0	*	*	1	.	J	1	.-1A	]	0	*	*
-Chromosome7	321028419	T	0	*	*	1	A	J	0	*	*	1	.	s	2	.A	JJ
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-Chromosome7	321206172	C	0	*	*	0	*	*	2	..	JJ	4	..T.	JJJJ	3	.T.	JJJ
-Chromosome7	321221232	C	1	.	J	0	*	*	1	T	s	3	..+1GT	`hR	0	*	*
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-Chromosome7	321230383	T	7	caCCAAA	ssJJJJJ	2	CC	JJ	6	AAA...	JJF<F7	1	A	J	5	,.ACA	RJJJJ
-Chromosome7	321230385	G	7	,a.....	ssJFFJJ	2	.A	FJ	3	...	AJJ	2	.A	<F	5	,.A..	eAJ<J
-Chromosome7	321230412	G	6	,,..A.	ssJAAF	2	..	J<	4	.A..	FF7J	2	.A	AA	5	,.A..	sJJFJ
-Chromosome7	321230461	G	2	.A	F;	2	..	=A	0	*	*	0	*	*	2	.A	F>
-Chromosome7	321230636	G	3	,a,	FD<	0	*	*	2	.a	\7	1	,	J	0	*	*
-Chromosome7	321230767	G	7	,-1a,-1a,-1a,-1a,-1a,-1a,-1a	JFJJJJJ	1	,-1a	J	7	,-1a,-1a,,-1a,,-1a,-1a	JJJJJJF	2	,-1a,-1a	JJ	6	,-1a,-1a,-1a,-1a,-1a,-1a	JJJJJJ
-Chromosome7	321232664	T	4	G.G.	JAJJ	5	GG..G	F9FJJ	5	G.G..	7FJFR	6	.....G	JJJFJJ	5	.G.G.	JJ<JJ
-Chromosome7	321232739	G	4	...c	s`aJ	5	.AC..	RHHVs	4	C..a	ARVF	5	...AA	sVkoW	4	..C,	koAF
-Chromosome7	321232810	T	4	c,,,	JJJJ	3	,,c	JJJ	5	,,c,,	JF7JJ	6	,c,,,,	JJJJJF	5	,,c,a	JJJJJ
-Chromosome7	321235979	G	1	A	A	5	.,..,	sAsss	3	,.A	As>	0	*	*	0	*	*
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-Chromosome7	321754851	G	0	*	*	1	.-4TCCA	s	0	*	*	1	.-4TCCA	s	2	..	so
-Chromosome7	321754900	T	0	*	*	1	.-1A	s	0	*	*	1	.-1A	s	2	..	se
-Chromosome7	321755783	G	0	*	*	1	t	A	0	*	*	1	,	F	1	,-5ggaga	7
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-Chromosome7	322814971	C	4	,,gg	JJJJ	0	*	*	1	a	F	0	*	*	1	,	A
-Chromosome7	322876528	C	1	T	J	0	*	*	1	.	A	0	*	*	2	T.	FJ
-Chromosome7	322876947	C	2	t.	JA	0	*	*	1	.	s	0	*	*	2	tt	JJ
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-Chromosome7	323225101	T	1	C	J	2	CG	Js	1	G	a	0	*	*	0	*	*
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-Chromosome7	332402205	T	1	,-3tag	5	0	*	*	0	*	*	1	,-3tag	6	2	,,	JJ
-Chromosome7	332550713	C	0	*	*	1	,-1a	J	1	,-1a	7	1	,-1a	F	0	*	*
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-Chromosome7	333056643	T	1	,-10gcccagcgag	F	0	*	*	1	.	F	1	,-10gcccagcgag	F	0	*	*
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-Chromosome7	333207949	T	6	....G.	F7JJJJ	0	*	*	2	..	JJ	0	*	*	5	...G.	FAJAJ
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-Chromosome7	333257239	T	1	.	J	0	*	*	1	G	J	2	AG	sI	0	*	*
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-Chromosome7	333295256	T	1	.	J	2	.A	JJ	1	A	7	0	*	*	0	*	*
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-Chromosome7	345545135	G	0	*	*	0	*	*	1	a	H	1	.	o	3	A,,	WFJ
-Chromosome7	345545136	C	0	*	*	0	*	*	1	t	H	1	.	o	3	T,,	oFJ
-Chromosome7	345545166	T	0	*	*	0	*	*	1	c	J	1	.	s	4	C,,c	sFJF
-Chromosome7	345545186	A	0	*	*	0	*	*	1	c	J	1	.	s	4	c,,c	JFJJ
-Chromosome7	345545313	G	0	*	*	4	AA.A	FJJF	0	*	*	1	.	J	1	A	J
-Chromosome7	345545357	C	0	*	*	2	G.	FJ	0	*	*	1	.	o	1	G	J
-Chromosome7	345545371	C	0	*	*	3	T.T	7JJ	0	*	*	1	.	s	1	T	7
-Chromosome7	345545438	T	0	*	*	4	ccc,	J<FJ	0	*	*	1	,	J	1	c	J
-Chromosome7	345545445	G	0	*	*	4	ccc,	JJ<J	0	*	*	1	,	J	1	c	J
-Chromosome7	345545451	C	0	*	*	4	,t,,	J<JJ	0	*	*	1	,	J	1	a	J
-Chromosome7	345545452	C	0	*	*	4	t,,,	JJFJ	0	*	*	1	a	J	1	t	J
-Chromosome7	345545462	C	0	*	*	4	t,,,	FJJA	0	*	*	1	,	J	1	t	J
-Chromosome7	345619376	T	1	C	A	0	*	*	0	*	*	1	.	J	2	.c	JJ
-Chromosome7	345619377	A	1	T	A	0	*	*	0	*	*	1	.	7	2	.t	FJ
-Chromosome7	345765612	G	0	*	*	0	*	*	1	.	A	1	.-1A	J	1	.-1A	J
-Chromosome7	345809363	C	8	.,,,t,,,	oAJJJFJ7	3	,,,	JJJ	8	,,t,,,t,	FFJJJJFJ	1	t	J	5	.t,,,	`7JJJ
-Chromosome7	345817628	C	3	.-1T,-1t,	JFA	1	,-1t	7	0	*	*	0	*	*	1	,	J
-Chromosome7	345817633	A	3	Gg,	JAF	1	g	A	0	*	*	0	*	*	1	,	F
-Chromosome7	345817645	A	3	Gg,	JF7	1	g	F	0	*	*	0	*	*	1	,	J
-Chromosome7	345817648	G	3	Aa,	JA<	1	a	A	0	*	*	0	*	*	1	,	J
-Chromosome7	345817673	T	3	Cc,	sJF	1	c	J	0	*	*	0	*	*	1	,	J
-Chromosome7	345817685	A	2	.g	sF	1	g	A	0	*	*	0	*	*	1	,	J
-Chromosome7	345817688	T	3	Cc,	sFJ	1	c	<	0	*	*	0	*	*	1	,	J
-Chromosome7	345817693	A	3	Gg,	sJJ	1	g	J	0	*	*	0	*	*	1	,	J
-Chromosome7	345817697	T	3	.c,	s<J	1	c	7	0	*	*	0	*	*	1	,	J
-Chromosome7	345817699	G	3	.a,	sAJ	1	a	7	0	*	*	0	*	*	1	,	F
-Chromosome7	345817736	C	3	t,a	FJJ	1	t	<	0	*	*	0	*	*	1	,	J
-Chromosome7	345817754	C	3	t,t	JJJ	1	t	F	0	*	*	0	*	*	1	,	J
-Chromosome7	345889121	A	1	G	J	2	.G	JJ	2	..	JJ	0	*	*	0	*	*
-Chromosome7	345889252	C	1	g	J	2	,,	JJ	2	t,	JF	0	*	*	0	*	*
-Chromosome7	345889318	C	1	,	J	2	t,	JJ	2	t,	JJ	0	*	*	0	*	*
-Chromosome7	345889337	T	1	,	J	2	,g	JJ	2	g,	JJ	0	*	*	0	*	*
-Chromosome7	346081063	T	0	*	*	1	c	F	2	,a	JJ	0	*	*	2	,,	JJ
-Chromosome7	346224276	C	0	*	*	3	ttt	JJJ	2	t,	AF	3	,,,	JJF	3	t,t	JJF
-Chromosome7	346290049	G	1	.	J	0	*	*	0	*	*	1	.-2AT	J	2	.-2AT.	JJ
-Chromosome7	346290217	A	1	,	J	0	*	*	0	*	*	1	t	J	2	t,	FJ
-Chromosome7	346378750	A	1	.	J	0	*	*	1	C	J	0	*	*	3	.C.	<JJ
-Chromosome7	346452740	T	2	.C	js	8	.CCCCC..	oasssjs\	10	......CC.C	s`Mae`jjss	1	C	j	6	..CCC,	s`MasF
-Chromosome7	346486385	A	0	*	*	2	.C	JF	3	CC.	JJJ	0	*	*	1	C	J
-Chromosome7	346542183	C	1	t	J	0	*	*	2	,t	JJ	0	*	*	1	,	J
-Chromosome7	346582280	G	1	c	7	0	*	*	0	*	*	1	.	s	2	,c	JJ
-Chromosome7	346719385	G	1	.	J	2	A.	JJ	0	*	*	0	*	*	1	A	J
-Chromosome7	346719394	C	1	.	J	2	T.	`J	0	*	*	0	*	*	1	T	s
-Chromosome7	346719496	A	1	.	s	2	gc	7J	0	*	*	1	C	s	1	g	J
-Chromosome7	346903956	G	1	,-1a	J	1	.-1A	J	0	*	*	2	,,-1a	J?	0	*	*
-Chromosome7	346915465	T	1	.	J	0	*	*	1	,-3ccc	F	2	,,-3ccc	JA	0	*	*
-Chromosome7	346915547	A	1	.-3GCT	F	0	*	*	1	,-3gct	F	1	,-3gct	=	0	*	*
-Chromosome7	347001624	C	0	*	*	2	.+1T.+1T	JJ	1	.+1T	J	0	*	*	3	..+1T.+1T	>AH
-Chromosome7	347064241	G	1	T	J	2	A.	FJ	1	.	J	0	*	*	0	*	*
-Chromosome7	347064348	T	1	C	J	2	.A	JJ	1	.	7	0	*	*	0	*	*
-Chromosome7	347064375	C	1	T	F	2	.T	JJ	1	.	J	0	*	*	0	*	*
-Chromosome7	347064465	T	1	,	J	1	c	;	2	C,	dJ	0	*	*	0	*	*
-Chromosome7	347064540	C	1	t	F	2	t,	A<	2	.,	oJ	0	*	*	0	*	*
-Chromosome7	347403328	A	1	.	J	0	*	*	0	*	*	1	C	s	2	C.	J7
-Chromosome7	347403340	C	1	.	J	0	*	*	0	*	*	1	T	X	2	T.	FF
-Chromosome7	347403685	C	1	,	J	0	*	*	0	*	*	1	t	J	2	,t	AJ
-Chromosome7	347421656	T	0	*	*	1	G	s	1	,	A	2	G^].	oA	0	*	*
-Chromosome7	347421693	A	0	*	*	1	T	s	1	,	J	2	T.	sf	0	*	*
-Chromosome7	347421717	G	0	*	*	1	A	s	1	,	J	2	A.	sa	0	*	*
-Chromosome7	347421737	G	0	*	*	1	a	J	1	,	J	2	a.	Js	0	*	*
-Chromosome7	347508967	A	0	*	*	0	*	*	2	g,	JJ	1	,	J	2	,g	<F
-Chromosome7	347513392	G	1	C	J	0	*	*	2	.C	JJ	1	.	A	0	*	*
-Chromosome7	347513737	A	1	g	A	0	*	*	2	,g	JJ	1	,	J	0	*	*
-Chromosome7	347591738	C	0	*	*	0	*	*	2	T.	J<	1	T	s	1	.	J
-Chromosome7	347934824	G	1	.-1T	F	0	*	*	1	.	J	0	*	*	1	A	J
-Chromosome7	348044297	G	0	*	*	1	a	J	3	a,,	JJJ	3	a,,	J<J	2	ta	J7
-Chromosome7	348044326	G	0	*	*	1	,-12atgagaataata	5	3	,-12atgagaataatat,	5JJ	3	,-12atgagaataata,,	57J	2	,,	JJ
-Chromosome7	348044405	G	0	*	*	0	*	*	1	a	J	2	,,	AJ	2	,a	JI
-Chromosome7	348268378	C	1	.-1T	J	0	*	*	0	*	*	1	.	J	1	.-1T	F
-Chromosome7	348329224	A	1	,	7	0	*	*	1	.-5TACTG	M	0	*	*	1	.-5TACTG	M
-Chromosome7	348347877	G	0	*	*	2	.^;.	JA	2	AA	JJ	0	*	*	3	AA.	JJJ
-Chromosome7	348425046	T	0	*	*	3	..C	<JJ	0	*	*	1	.	J	1	A	J
-Chromosome7	348425047	G	0	*	*	3	..T	JJJ	0	*	*	1	T	F	1	.	J
-Chromosome7	348668557	C	0	*	*	2	a,	JJ	1	t	J	0	*	*	2	,,	JJ
-Chromosome7	348682648	T	1	c	J	2	c,	JF	7	ccc,cc,	JJJJJFJ	3	cc,	JJJ	7	c,c,c,,	FJJJJFJ
-Chromosome7	348904278	T	0	*	*	0	*	*	1	.	J	1	.-3AAG	J	1	.-3AAG	J
-Chromosome7	348916686	C	2	T.	ss	1	.	s	0	*	*	0	*	*	2	A.	ss
-Chromosome7	348946421	T	0	*	*	4	.,,a	sJJJ	1	,	J	0	*	*	1	a	s
-Chromosome7	349093658	A	1	,	J	0	*	*	1	g	J	2	.g	sJ	2	g,	JF
-Chromosome7	349188696	A	1	t	J	2	t,	JJ	0	*	*	0	*	*	1	,	<
-Chromosome7	349208585	C	2	..-1T	JJ	2	.-1T.	JF	1	.-1T	J	1	.-1T	J	1	.	J
-Chromosome7	349332788	G	2	,a	JJ	1	A	P	0	*	*	0	*	*	1	,	J
-Chromosome7	349392171	C	1	T	F	0	*	*	0	*	*	1	.	F	2	T.	AF
-Chromosome7	349392173	G	1	.	J	0	*	*	0	*	*	1	A	J	2	.A	AJ
-Chromosome7	349392194	C	1	T	J	0	*	*	0	*	*	1	.	J	2	T.	Js
-Chromosome7	349392203	A	1	G	J	0	*	*	0	*	*	1	.	`	2	G.	Fs
-Chromosome7	349392206	C	1	G	J	0	*	*	0	*	*	1	.	o	2	G.	Fj
-Chromosome7	349392274	G	1	A	J	0	*	*	0	*	*	1	.	s	2	A.	As
-Chromosome7	349392276	A	1	G	J	0	*	*	0	*	*	1	.	o	2	G.	<s
-Chromosome7	349419983	A	1	,-1t	G	1	,-1t	G	0	*	*	0	*	*	3	,,,	J<J
-Chromosome7	349420012	C	1	,-2at	J	1	,-2at	J	0	*	*	0	*	*	4	,,-2at,-2at,-2at	JJJJ
-Chromosome7	349423859	C	7	a,,,,,,	AJJJJJJ	6	,,,ta,	JAJJJJ	7	a,,,,,,	AJJJJJJ	1	,	F	6	,t,,,,	AJJFAJ
-Chromosome7	349492251	G	1	t	<	2	,t	JJ	1	,	J	0	*	*	0	*	*
-Chromosome7	349499134	C	2	t.	FJ	0	*	*	1	t	J	2	t.	JF	0	*	*
-Chromosome7	350048436	G	0	*	*	1	a	<	1	,	J	0	*	*	2	a,	JJ
-Chromosome7	350058226	G	0	*	*	1	.	o	1	t	J	2	t.	Fo	0	*	*
-Chromosome7	350058231	G	0	*	*	1	.	s	1	a	J	2	a.	Jo	0	*	*
-Chromosome7	350151680	G	3	..A	JJJ	0	*	*	1	.	J	1	T	J	0	*	*
-Chromosome7	350151687	A	3	..C	JJJ	0	*	*	1	.	J	1	C	J	0	*	*
-Chromosome7	350219405	A	0	*	*	2	..	AA	2	G.	kF	2	G.	JF	0	*	*
-Chromosome7	350219430	C	0	*	*	2	..	JJ	2	T.	oJ	2	T.	J<	0	*	*
-Chromosome7	350219498	A	0	*	*	3	..T	JJs	1	.	J	2	T.	sF	0	*	*
-Chromosome7	350219501	G	0	*	*	3	..A	JJs	1	.	J	2	A.	sF	0	*	*
-Chromosome7	350219508	G	0	*	*	3	..A	JJs	1	.	J	2	A.	oJ	0	*	*
-Chromosome7	350219514	A	0	*	*	3	CC.	JJs	1	C	J	2	..	s<	0	*	*
-Chromosome7	350219521	G	0	*	*	3	..A	JJs	1	.	J	2	.a	JJ	0	*	*
-Chromosome7	350219522	A	0	*	*	3	..C	FJs	1	.	J	2	.t	<J	0	*	*
-Chromosome7	350219525	A	0	*	*	3	..G	FJs	1	.	J	2	.g	JJ	0	*	*
-Chromosome7	350219531	A	0	*	*	3	..G	FJs	1	.	J	2	.g	FJ	0	*	*
-Chromosome7	350219559	G	1	.	J	2	T.	sJ	0	*	*	1	a	J	0	*	*
-Chromosome7	350219587	T	1	.	J	2	A.	sJ	0	*	*	1	a	J	0	*	*
-Chromosome7	350219591	A	1	.	J	2	G.	sJ	0	*	*	1	g	J	0	*	*
-Chromosome7	350219597	T	1	.	J	2	C.	sJ	0	*	*	1	c	J	0	*	*
-Chromosome7	350219907	G	1	c	A	3	,c,	JAF	0	*	*	1	.	s	0	*	*
-Chromosome7	350219912	T	1	c	J	3	,c,	JJA	0	*	*	1	.	s	0	*	*
-Chromosome7	350219924	A	1	g	F	3	,g,	JJF	0	*	*	1	.	s	0	*	*
-Chromosome7	350219954	C	1	,	F	3	t,,	JFJ	0	*	*	1	T	s	0	*	*
-Chromosome7	350219974	C	1	t	J	3	,t,	JJA	0	*	*	1	,	J	0	*	*
-Chromosome7	350226368	A	0	*	*	0	*	*	2	G.	VW	2	..	as	2	G.	ko
-Chromosome7	350282003	A	1	.	A	0	*	*	1	.-1G	J	2	.-1G*	sE	0	*	*
-Chromosome7	350285776	G	0	*	*	1	A	A	3	.AA	FJJ	0	*	*	2	..	JF
-Chromosome7	350285809	A	0	*	*	1	G	<	3	.GG	JJJ	0	*	*	2	..	AA
-Chromosome7	350285817	G	0	*	*	1	A	:	3	.AA	<55	0	*	*	2	..	JJ
-Chromosome7	350285819	G	0	*	*	1	.-7TTATCTA	:	3	..-7TTATCTA.-7TTATCTA	J55	0	*	*	2	..	JJ
-Chromosome7	350285974	A	0	*	*	1	g	F	3	,gg	JJJ	0	*	*	2	,,	FA
-Chromosome7	350286004	G	0	*	*	1	a	J	3	,aa	JJJ	0	*	*	2	,,	JJ
-Chromosome7	350286039	C	0	*	*	1	t	J	3	,tt	7JJ	0	*	*	2	,,	JJ
-Chromosome7	350286046	G	0	*	*	1	a	A	3	,aa	JJJ	0	*	*	1	,	7
-Chromosome7	350286053	A	0	*	*	1	g	J	3	,gg	FJJ	0	*	*	2	,,	A<
-Chromosome7	350388772	C	3	.+1T.+1T.	JFJ	2	.+2TT.	FJ	2	.+1T.+2TT	JJ	2	..+10TTTTTTTTTG	JJ	6	.+3TTT...+1T.+4TTTT.	JJJFJF
-Chromosome7	350389024	G	2	,-1t,-1t	JF	0	*	*	4	,-1t,-1t,-1t,	JJJJ	1	,-1t	J	4	,-1t,-1t,,+6tttttt	JJJ<
-Chromosome7	350533390	C	1	,-3taa	F	0	*	*	1	,	J	0	*	*	1	,-3taa	J
-Chromosome7	350585795	C	0	*	*	1	.	s	3	TT.	sss	2	,T	Jo	0	*	*
-Chromosome7	350585804	T	0	*	*	1	.	s	3	GG.	ose	2	,G	Ff	0	*	*
-Chromosome7	350585829	C	0	*	*	1	,	J	3	tt,	77J	1	t	7	0	*	*
-Chromosome7	350591161	G	0	*	*	2	,a	JJ	2	aa	JJ	0	*	*	2	,,	JJ
-Chromosome7	350602243	G	0	*	*	2	a,	JJ	2	a,	FJ	2	,,	J<	2	aa	JJ
-Chromosome7	350664691	A	2	.G	JJ	2	g.	sJ	2	.G	sJ	2	.G	JJ	4	..G.	JFJJ
-Chromosome7	350668206	A	3	...	AAF	0	*	*	2	.G	F=	5	G.GG.	=F==<	5	G.GG.	=F==F
-Chromosome7	350678527	T	0	*	*	1	.-1C	E	1	.-1C	G	0	*	*	2	.-1C.-1C	GG
-Chromosome7	350719706	A	1	.-7GCTGCTT	s	1	,	J	1	,-7gctgctt	J	0	*	*	0	*	*
-Chromosome7	350823984	G	0	*	*	4	..A.	AJJA	1	A	J	0	*	*	1	.	A
-Chromosome7	350824430	G	0	*	*	3	,,a	JJF	1	a	J	0	*	*	2	,,	J7
-Chromosome7	350930703	G	2	C.	JJ	1	C	J	4	..C.	JAJF	0	*	*	1	.	J
-Chromosome7	350930838	G	2	cc	JJ	2	c.	Jo	4	aaac	JJJJ	0	*	*	1	,	A
-Chromosome7	351136799	T	0	*	*	1	,	J	0	*	*	1	,-2ac	J	1	a	J
-Chromosome7	351142034	A	0	*	*	2	GC	JJ	1	C	J	0	*	*	1	G	J
-Chromosome7	351142093	A	0	*	*	2	.G	JJ	1	G	J	0	*	*	1	.	s
-Chromosome7	351142142	G	0	*	*	2	.T	oo	1	T	J	0	*	*	1	.	s
-Chromosome7	351142165	A	0	*	*	2	G,	sJ	1	g	J	0	*	*	1	,	J
-Chromosome7	351142201	A	0	*	*	2	,,-1t	JA	1	,-1t	J	0	*	*	1	,	J
-Chromosome7	351145304	C	2	..	FJ	0	*	*	2	,T	JJ	0	*	*	1	T	J
-Chromosome7	351145343	C	2	T.	FJ	0	*	*	1	.	J	0	*	*	1	T	J
-Chromosome7	351174502	C	0	*	*	1	.	J	2	.T	FF	1	T	J	0	*	*
-Chromosome7	351174710	T	0	*	*	2	,,	JJ	2	c,	JF	1	c	J	0	*	*
-Chromosome7	351296085	G	2	,A	J7	1	.	A	0	*	*	1	A	7	5	.A.A.	F7F7F
-Chromosome7	351296476	T	0	*	*	1	,	F	0	*	*	1	c	J	4	,c,,	AJAJ
-Chromosome7	351449275	T	0	*	*	0	*	*	1	.	J	1	A	7	4	.AA.	JJAJ
-Chromosome7	351546205	C	1	.-1A	F	0	*	*	1	.	J	2	.-1A.-1A	ss	0	*	*
-Chromosome7	351550142	A	1	,	J	1	.-5TTGGT	f	0	*	*	1	.-5TTGGT	s	0	*	*
-Chromosome7	351650596	C	2	,t	JJ	0	*	*	1	,	J	0	*	*	1	t	J
-Chromosome7	351650608	A	2	,$c	>J	0	*	*	1	,$	>	0	*	*	1	c	A
-Chromosome7	351688256	T	0	*	*	1	.-1C	J	1	.-1C	J	0	*	*	1	.-1C	J
-Chromosome7	351688474	T	0	*	*	1	,-1a	J	1	,-1a	J	0	*	*	1	,-1a	J
-Chromosome7	351818880	A	0	*	*	0	*	*	3	..G	FAJ	1	G	s	1	.	J
-Chromosome7	351819021	T	0	*	*	1	C	s	2	,c	FJ	0	*	*	1	,	J
-Chromosome7	351819049	T	0	*	*	1	c	J	3	c,c	FJJ	0	*	*	1	,	J
-Chromosome7	351819087	A	0	*	*	1	g	J	2	,g	FJ	0	*	*	1	,	J
-Chromosome7	351824713	A	2	G.	JJ	0	*	*	1	.	J	0	*	*	1	G	J
-Chromosome7	351824739	T	2	C.	JJ	0	*	*	1	.	J	0	*	*	1	C	J
-Chromosome7	351824742	C	2	T.	JF	0	*	*	1	.	J	0	*	*	1	T	A
-Chromosome7	351824758	C	2	T.	FJ	0	*	*	1	.	`	0	*	*	1	T	J
-Chromosome7	351824762	G	2	A.	JJ	0	*	*	1	.	e	0	*	*	1	A	J
-Chromosome7	351824785	C	2	T.	JF	0	*	*	1	.	e	0	*	*	1	T	B
-Chromosome7	351979512	G	1	.-1C	J	1	.-1C	J	0	*	*	1	,-1c	J	0	*	*
-Chromosome7	352083091	C	1	.-1A	J	0	*	*	2	..	JJ	1	.-1A	J	1	.-1A	J
-Chromosome7	352241086	A	1	.	J	0	*	*	1	C	J	2	C.	JJ	0	*	*
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-Chromosome7	352257936	A	0	*	*	3	,..	JJJ	1	,-1t	F	0	*	*	1	,-1t	F
-Chromosome7	352258895	A	1	.-1T	s	1	.-1T	o	1	.-1T	s	0	*	*	0	*	*
-Chromosome7	352465184	T	1	,	J	0	*	*	1	c	J	2	c,	JJ	0	*	*
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-Chromosome7	352653926	C	2	.-4GCAG.-4GCAG	==	0	*	*	0	*	*	1	.-4GCAG	=	1	.-4GCAG	=
-Chromosome7	352658920	A	2	g,	JA	0	*	*	0	*	*	3	.g,	sJ<	1	,	J
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-Chromosome7	352658974	A	2	gg	J7	0	*	*	0	*	*	3	g,,	JFJ	1	,	J
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-Chromosome7	352690801	A	1	,-3tgt	J	0	*	*	1	,-3tgt	J	1	.	s	0	*	*
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-Chromosome7	352837149	T	2	G.	FJ	0	*	*	2	G.	JJ	0	*	*	1	.	J
-Chromosome7	352837195	T	2	G.	JJ	0	*	*	1	G	J	0	*	*	1	.	F
-Chromosome7	352905954	C	0	*	*	2	.-2AG.-2AG	7J	1	.-2AG	J	0	*	*	3	.-2AG.-2AG.-2AG	AJJ
-Chromosome7	353282895	A	0	*	*	1	G	:	2	.G	F:	0	*	*	1	.	F
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-Chromosome7	353289911	C	0	*	*	0	*	*	2	t,	JJ	1	,	J	3	tt,	JJJ
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-Chromosome7	353340123	T	1	,	A	1	c	J	0	*	*	2	,c	AJ	0	*	*
-Chromosome7	353481215	A	7	ggg,,g,	JJJJJJJ	3	g,g	JJJ	3	g,,	<JJ	5	,g,,,	JJJFJ	3	g,g	JJJ
-Chromosome7	353481230	T	7	,aa,,,,	JJJJJFJ	3	,a,	JJF	4	,,a,	JAJJ	5	,,,,,	JJJJJ	3	a,c	JAF
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-Chromosome7	353582958	C	0	*	*	0	*	*	2	A.	sJ	4	....	AJkJ	2	.T	JJ
-Chromosome7	353588525	C	8	.A......	JJJJJJJJ	9	...A.....	JJJFJJAJJ	4	.A..	JJJJ	7	..G.A..	<JJAJ<J	10	A.AA......	FJJFJ7JJJJ
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-Chromosome7	353831174	C	0	*	*	0	*	*	1	.-2TG	J	1	,	J	1	.-2TG	J
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-Chromosome7	354098796	A	2	G.	JJ	0	*	*	1	G	J	0	*	*	1	.	F
-Chromosome7	354099105	C	1	,-1t	J	0	*	*	0	*	*	1	.-1T	s	1	,-1t	J
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-Chromosome7	354439216	C	1	.-1G	J	2	.-1G.-1G	JJ	0	*	*	1	.-1G	J	2	.-1G.-1G	JJ
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-Chromosome7	354779141	A	0	*	*	0	*	*	2	.+1C.+1C	JJ	1	.	s	1	.-1C	J
-Chromosome7	354812917	T	0	*	*	1	.-7AGCAGAC	s	2	.-7AGCAGAC.-7AGCAGAC	JJ	1	.-7AGCAGAC	J	0	*	*
-Chromosome7	354885848	G	0	*	*	1	.	J	4	T...	FJJA	2	T.	AJ	2	.a	JJ
-Chromosome7	354886754	T	10	...G......	<JJJAJJJJJ	5	..G.G	JJAJJ	7	....GG.	FJJJJJJ	1	.	J	3	.G.	JJJ
-Chromosome7	354886826	A	10	.......GGG	JJJFAJFJJJ	5	.....	JFFJJ	10	.......G.^I.	JFFJJJJJA<	1	G	J	3	.G.	JJJ
-Chromosome7	354886859	C	10	..T..T..T.	FJsJFJJJFJ	5	...T.	JF7AA	10	.........T	AJJJJJJsJJ	2	T^=.	JA	3	...	JAJ
-Chromosome7	354886976	T	9	,,,,,,,,,	JJJJFJAFJ	5	c,,,,	JFJJJ	10	,,,,,,,,,c	JJJJJJJJJF	2	C,	sJ	3	c,,	FJJ
-Chromosome7	354887372	T	0	*	*	2	C.	JJ	2	C.	JJ	1	C	J	0	*	*
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-Chromosome7	355682493	C	0	*	*	1	.-1A	F	1	.	J	0	*	*	1	.-13ATTGTAGTTGCAA	;
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-contig_22396_1	2651	C	219	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	JJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJAJJJJJJJ<FFJJJFJJAJFJJJJJAJJJJJJJJJJJJJJJAJ7JJJJAJFJJJJJJFJJJJJJJJJJJFJJJJJJAJJJJAJ7JJJJJ7JJJJJJJAFJJJJJJJJJJJJJAJJJJJJJJJJJJFJJFJJJJJAJFJAJJJJJJJAJF<JJJJJJJJJJJJFJAJJ	159	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	FAJ<JJJJJJJJJJJJJAJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJAJ<JJJJJAJJJJ<JJAJJJJJFFJJFJJJJFJJJJJJJJJFJFJJJJ<JJJFJJJJJJJJJJJJJJJJJJJJFAJJJJJJJJAFJJAJJJJJJJJJJJJJJJJJJJJJ<	258	,$,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,	AFJJJJJJJJJFJ<JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJ<JJJJJJJJ7JJJJJJJ7AJJFJJJJJJJJJJJJJFFJJJJJFJJJJJJJJJJJJJJJJJJJJJJFJJJFJ<AJJJJJJJJFJJJJJJJJJJJJJJAJJJJJJJFJJJJJJJJJJJJJAJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJJJJJ<JAJJJFJJJJJJJJJFJAJJJJJJJJJJJJJJJJFJ	175	,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,	JJFFJJJJJJJFJJFJJJJJJJJJJ7JJJJJJJJJJJJJJAJJJJJJFJJJJAJJJJJJJJJ<JJJJAJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJJJJJJFJAJJJJJJJFJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJFFFJJJ	296	t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,t,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	<FJJJJJJJJFJJJJJJJJJJJJJJJFJJJFJJJJJJJFJJJJJJJJJJJJAFJJJFJJJJJJJJJJJJJJJJJJJJFAJJJJFJJJJJJJJJJJJJJJJJJJJJJFJJJJJJJJJJFJJJJJAJJAAJFJJJJJJJFJJFJJJJFJJJJJJJJJJJJJJAJJJJJJJJJFJJJJJJJJJJJJJJJJJJJJJJJJJJFJFJJJJJJJJJFAJAJJFJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJFJJJJJJFJJJJJJJJJJJJJJJJJJFFJJJJJJJ
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-contig_22396_1	4913	C	2	.+2AA.+1A	FF	0	*	*	1	.	J	5	.+1A..,.+2AA	JJJ<J	0	*	*
-contig_22396_1	6914	C	0	*	*	3	..T	fks	8	......T.	ssCosssR	6	..TT..	ssssso	6	,...T.	ssssss
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-contig_22396_1	23890	A	3	g,g	JJJ	1	,	J	0	*	*	0	*	*	1	g	J
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-contig_31718_1	15303	G	100	...,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	RsoJ<7FJJAJ7FFJFFFF7JJFFJA<JJJJJFJFAAJF<<JJJJJAJJ7FJJFJFJAJJFJJAFJJJJJFJFJJJJJF<AFJAFJJ7JFFJF7JAJAAJ	87	..............,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	VffsoososofjssJ<JJJFJJFFJJFJJAJJ<JJJJAJJFJJFJFJJFJJ7FFJFJF7JAJJJFFJ<AJFFJJJJJFFJJJFFJJA	119	............,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,a,,,,,,	RoosssoooassJAFJJFJJ<7FFFJJFJJAAJFFF7<JJFJA<JJFJJJAAFJFJFFFFFFJFJJFJJJFJFJJJFFJFFJFJJJJJAFJJ<FAJJJJJFJJJAFJJAFFFJFFAJJ<	92	.............,,,,,,,,,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	fosesssosoosoJ<JJJFFFJ<JFJJ7JA<7JAJAJJJFJJ<FJFAFJJJJAFJFJJJJFFJJJJJAJJFJJJJ<F7JJJJJJFJJJJJJJ	146	.....,,,a,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,	sasok7<FJFJJJJ<FJJJFJJFJJ7JJFJFJFJAJ<JFJJAFJJJFJFFJJFFJAJJFJJJJJJJJFJJFAJF7JJJ<JFJFJJ<FJ7FF<F7JJFJJJJJJAJAJ777JFJJJFJJFFJJ7JJAJJJFJ<FJJJFFFJ7JJJJJ
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