DESCRIPTION

Package: CHETAH
Title: Fast and accurate scRNA-seq cell type identification
Type: Package
Version: 1.1.5
Date: 10-03-2019
Authors@R: c(person("Jurrian", "de Kanter", email = "jurriandekanter@gmail.com",  role = c("aut", "cre")),
             person("Philip", "Lijnzaad", email = "p.lijnzaad@prinsesmaximacentrum.nl", role = c("aut")))
Description: CHETAH (CHaracterization of cEll Types Aided by Hierarchical classification) is an accurate, selective and fast scRNA-seq classifier. 
	  Classification is guided by a reference dataset,
    preferentially also a scRNA-seq dataset. By hierarchical clustering of the reference data, CHETAH creates
	  a classification tree that enables a step-wise, top-to-bottom classification. Using a novel stopping rule,
	  CHETAH classifies the input cells to the cell types of the references and to "intermediate types": more general
	  classifications that ended in an intermediate node of the tree.
Imports:
    gplots,
    shiny,
    plotly,
    pheatmap,
    bioDist,
    dendextend,
    cowplot,
  	corrplot,
  	grDevices,
  	stats,
  	graphics,
  	reshape2,
  	S4Vectors,
  	SummarizedExperiment
Depends:
    R (>= 3.6),
	  ggplot2,
  	SingleCellExperiment
License: file LICENSE
Encoding: UTF-8
biocViews: 
  	Classification,
  	RNASeq,
  	SingleCell,
  	Clustering
RoxygenNote: 6.1.1
Suggests: 
    knitr,
    rmarkdown,
    Matrix,
    testthat,
    vdiffr
VignetteBuilder: knitr
LazyData: true
BugReports: https://github.com/jdekanter/CHETAH
URL: https://github.com/jdekanter/CHETAH