diff --git a/modules/nf-core/clustalo/align/tests/main.nf.test b/modules/nf-core/clustalo/align/tests/main.nf.test index 4d7c97081a3..c04a682b078 100644 --- a/modules/nf-core/clustalo/align/tests/main.nf.test +++ b/modules/nf-core/clustalo/align/tests/main.nf.test @@ -28,8 +28,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("alignment - uncompressed")}, - { assert snapshot(process.out.versions).match("versions") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match() } ) } @@ -52,8 +52,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("alignment - compressed")}, - { assert snapshot(process.out.versions).match("versions") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match() } ) } @@ -90,8 +90,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("with_guide_tree_alignment")}, - { assert snapshot(process.out.versions).match("with_guide_tree_versions") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match() } ) } } diff --git a/modules/nf-core/famsa/align/tests/main.nf.test b/modules/nf-core/famsa/align/tests/main.nf.test index 2d8e1482a6d..5b5c263ce3c 100644 --- a/modules/nf-core/famsa/align/tests/main.nf.test +++ b/modules/nf-core/famsa/align/tests/main.nf.test @@ -27,8 +27,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("alignment_uncompressed")}, - { assert snapshot(process.out.versions).match("versions") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match() } ) } @@ -51,8 +51,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("alignment_compressed")}, - { assert snapshot(process.out.versions).match("versions") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match() } ) } @@ -88,8 +88,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("with_guide_tree_alignment")}, - { assert snapshot(process.out.versions).match("with_guide_tree_versions") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match()} ) } } diff --git a/modules/nf-core/mafft/tests/main.nf.test b/modules/nf-core/mafft/tests/main.nf.test index f57ab4965da..97a07221424 100644 --- a/modules/nf-core/mafft/tests/main.nf.test +++ b/modules/nf-core/mafft/tests/main.nf.test @@ -28,7 +28,7 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out).match("SARS-CoV-2 scaffolds fasta - uncompressed")} + { assert snapshot(process.out).match()} ) } @@ -55,7 +55,7 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out).match("SARS-CoV-2 scaffolds fasta - compressed")} + { assert snapshot(process.out).match()} ) } @@ -85,7 +85,7 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out).match("SARS-CoV-2 scaffolds fasta - add informative sites fasta normal") } + { assert snapshot(process.out).match() } ) } } @@ -115,7 +115,7 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out).match("SARS-CoV-2 scaffolds fasta - add informative sites fasta fragments") } + { assert snapshot(process.out).match() } ) } } @@ -144,7 +144,7 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out).match("SARS-CoV-2 scaffolds fasta - add informative sites fasta full") } + { assert snapshot(process.out).match() } ) } @@ -174,7 +174,7 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out).match("SARS-CoV-2 scaffolds fasta - add informative sites fasta profile") } + { assert snapshot(process.out).match() } ) } @@ -205,7 +205,7 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out).match("SARS-CoV-2 scaffolds fasta - add informative sites fasta long") } + { assert snapshot(process.out).match() } ) } @@ -239,7 +239,7 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out).match("SARS-CoV-2 scaffolds fasta - add informative sites fasta multiple") } + { assert snapshot(process.out).match() } ) } diff --git a/modules/nf-core/mtmalign/align/tests/main.nf.test b/modules/nf-core/mtmalign/align/tests/main.nf.test index e12ef76a6a7..0ce52020654 100644 --- a/modules/nf-core/mtmalign/align/tests/main.nf.test +++ b/modules/nf-core/mtmalign/align/tests/main.nf.test @@ -44,7 +44,7 @@ nextflow_process { { assert path(process.out.alignment[0][1]).getText().contains(">3.pdb") }, { assert path(process.out.alignment[0][1]).getText().contains(">4.pdb") }, { assert path(process.out.alignment[0][1]).getText().contains(">5.pdb") }, - { assert snapshot(process.out.versions).match("versions") } + { assert snapshot(process.out.versions).match() } ) } } @@ -84,7 +84,7 @@ nextflow_process { { assert path(process.out.alignment[0][1]).getTextGzip().contains(">3.pdb") }, { assert path(process.out.alignment[0][1]).getTextGzip().contains(">4.pdb") }, { assert path(process.out.alignment[0][1]).getTextGzip().contains(">5.pdb") }, - { assert snapshot(process.out.versions).match("versions") } + { assert snapshot(process.out.versions).match() } ) } } diff --git a/modules/nf-core/tcoffee/align/tests/main.nf.test b/modules/nf-core/tcoffee/align/tests/main.nf.test index d31d387205e..67588ab042b 100644 --- a/modules/nf-core/tcoffee/align/tests/main.nf.test +++ b/modules/nf-core/tcoffee/align/tests/main.nf.test @@ -31,8 +31,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("alignment")}, - { assert snapshot(process.out.versions).match("versions") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match() } ) } } @@ -57,8 +57,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("alignment - uncompressed")}, - { assert snapshot(process.out.versions).match("versions") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match()} ) } } @@ -98,8 +98,8 @@ nextflow_process { then { assertAll( { assert process.success }, - { assert snapshot(process.out.alignment).match("alignment_guidetree")}, - { assert snapshot(process.out.versions).match("versions_guidetree") } + { assert snapshot(process.out.alignment).match()}, + { assert snapshot(process.out.versions).match() } ) } @@ -142,7 +142,7 @@ nextflow_process { assertAll( { assert process.success }, { assert path(process.out.alignment.get(0).get(1)).getTextGzip().contains("1ahl") }, - { assert snapshot(process.out.versions).match("versions_structure") } + { assert snapshot(process.out.versions).match() } ) }