Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Uploader code #19

Open
fmaguire opened this issue Apr 16, 2020 · 1 comment
Open

Uploader code #19

fmaguire opened this issue Apr 16, 2020 · 1 comment
Labels
enhancement New feature or request

Comments

@fmaguire
Copy link
Collaborator

Write accessory scripts to upload clean reads as biosamples and final assembly to nexstrain/GISAID
@fmaguire fmaguire added the enhancement New feature or request label Jun 15, 2020
@fmaguire
Copy link
Collaborator Author

fmaguire commented Jun 16, 2020 •
edited
Loading

Is this still a desired feature? To save login/API issues the easiest way to implement something close would be just to pre-generate all the tables and collate all the correct files for upload. Would also require the sample table expanding to including the metadata.

#71 is part of this: so merging it in and closing:

"This code generates NCBI biosamples from GISAID sample information. Could form a useful template to work off. https://github.com/schultzm/gnb"

@fmaguire fmaguire mentioned this issue Jun 16, 2020
Closed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@fmaguire