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__init__.py
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__init__.py
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"""Helpers for other modules."""
import hashlib
import json
import logging
import math
import os
import re
import stat
import sys
import time
from typing import Optional, Tuple
import colorama
logger = logging.getLogger(__name__)
LOCAL_CHUNK_SIZE = 2 ** 20 # 1 MB
LARGE_FILE_SIZE = 2 ** 30 # 1 GB
LARGE_DIR_SIZE = 100
TARGET_REGEX = re.compile(r"(?P<path>.*?)(:(?P<name>[^\\/:]*))??$")
def dos2unix(data):
return data.replace(b"\r\n", b"\n")
def _fobj_md5(fobj, hash_md5, binary, progress_func=None):
while True:
data = fobj.read(LOCAL_CHUNK_SIZE)
if not data:
break
if binary:
chunk = data
else:
chunk = dos2unix(data)
hash_md5.update(chunk)
if progress_func:
progress_func(len(data))
def file_md5(fname, fs):
""" get the (md5 hexdigest, md5 digest) of a file """
from dvc.istextfile import istextfile
from dvc.progress import Tqdm
hash_md5 = hashlib.md5()
binary = not istextfile(fname, fs=fs)
size = fs.getsize(fname) or 0
no_progress_bar = True
if size >= LARGE_FILE_SIZE:
no_progress_bar = False
msg = (
f"Computing md5 for a large file '{fname}'. "
"This is only done once."
)
logger.info(msg)
with Tqdm(
desc=str(fname),
disable=no_progress_bar,
total=size,
bytes=True,
leave=False,
) as pbar:
with fs.open(fname, "rb") as fobj:
_fobj_md5(fobj, hash_md5, binary, pbar.update)
return hash_md5.hexdigest()
def bytes_hash(byts, typ):
hasher = getattr(hashlib, typ)()
hasher.update(byts)
return hasher.hexdigest()
def dict_filter(d, exclude=()):
"""
Exclude specified keys from a nested dict
"""
if isinstance(d, list):
return [dict_filter(e, exclude) for e in d]
if isinstance(d, dict):
return {
k: dict_filter(v, exclude)
for k, v in d.items()
if k not in exclude
}
return d
def dict_hash(d, typ, exclude=()):
filtered = dict_filter(d, exclude)
byts = json.dumps(filtered, sort_keys=True).encode("utf-8")
return bytes_hash(byts, typ)
def dict_md5(d, **kwargs):
return dict_hash(d, "md5", **kwargs)
def dict_sha256(d, **kwargs):
return dict_hash(d, "sha256", **kwargs)
def _split(list_to_split, chunk_size):
return [
list_to_split[i : i + chunk_size]
for i in range(0, len(list_to_split), chunk_size)
]
def _to_chunks_by_chunks_number(list_to_split, num_chunks):
chunk_size = int(math.ceil(float(len(list_to_split)) / num_chunks))
if len(list_to_split) == 1:
return [list_to_split]
if chunk_size == 0:
chunk_size = 1
return _split(list_to_split, chunk_size)
def to_chunks(list_to_split, num_chunks=None, chunk_size=None):
if (num_chunks and chunk_size) or (not num_chunks and not chunk_size):
raise ValueError(
"Only one among `num_chunks` or `chunk_size` must be defined."
)
if chunk_size:
return _split(list_to_split, chunk_size)
return _to_chunks_by_chunks_number(list_to_split, num_chunks)
# NOTE: Check if we are in a bundle
# https://pythonhosted.org/PyInstaller/runtime-information.html
def is_binary():
return getattr(sys, "frozen", False)
def fix_env(env=None):
"""Fix env variables modified by PyInstaller [1] and pyenv [2].
[1] http://pyinstaller.readthedocs.io/en/stable/runtime-information.html
[2] https://github.com/pyenv/pyenv/issues/985
"""
if env is None:
env = os.environ.copy()
else:
env = env.copy()
if is_binary():
lp_key = "LD_LIBRARY_PATH"
lp_orig = env.get(lp_key + "_ORIG", None)
if lp_orig is not None:
env[lp_key] = lp_orig
else:
env.pop(lp_key, None)
# Unlike PyInstaller, pyenv doesn't leave backups of original env vars
# when it modifies them. If we look into the shim, pyenv and pyenv-exec,
# we can figure out that the PATH is modified like this:
#
# PATH=$PYENV_BIN_PATH:${bin_path}:${plugin_bin}:$PATH
#
# where
#
# PYENV_BIN_PATH - might not start with $PYENV_ROOT if we are running
# `system` version of the command, see pyenv-exec source code.
# bin_path - might not start with $PYENV_ROOT as it runs realpath on
# it, but always has `libexec` part in it, see pyenv source code.
# plugin_bin - might contain more than 1 entry, which start with
# $PYENV_ROOT, see pyenv source code.
#
# Also, we know that whenever pyenv is running, it exports these env vars:
#
# PYENV_DIR
# PYENV_HOOK_PATH
# PYENV_VERSION
# PYENV_ROOT
#
# So having this, we can make a rightful assumption about what parts of the
# PATH we need to remove in order to get the original PATH.
path = env.get("PATH", "")
parts = path.split(":")
bin_path = parts[1] if len(parts) > 2 else ""
pyenv_dir = env.get("PYENV_DIR")
pyenv_hook_path = env.get("PYENV_HOOK_PATH")
pyenv_version = env.get("PYENV_VERSION")
pyenv_root = env.get("PYENV_ROOT")
env_matches = all([pyenv_dir, pyenv_hook_path, pyenv_version, pyenv_root])
bin_path_matches = os.path.basename(bin_path) == "libexec"
# NOTE: we don't support pyenv-win
if os.name != "nt" and env_matches and bin_path_matches:
# removing PYENV_BIN_PATH and bin_path
parts = parts[2:]
if parts:
# removing plugin_bin from the left
plugin_bin = os.path.join(pyenv_root, "plugins")
while parts[0].startswith(plugin_bin):
del parts[0]
env["PATH"] = ":".join(parts)
return env
def tmp_fname(fname=""):
""" Temporary name for a partial download """
from shortuuid import uuid
return os.fspath(fname) + "." + uuid() + ".tmp"
def current_timestamp():
import nanotime
return int(nanotime.timestamp(time.time()))
def colorize(message, color=None, style=None):
"""Returns a message in a specified color."""
if not color:
return message
styles = {
"dim": colorama.Style.DIM,
"bold": colorama.Style.BRIGHT,
}
colors = {
"green": colorama.Fore.GREEN,
"yellow": colorama.Fore.YELLOW,
"blue": colorama.Fore.BLUE,
"red": colorama.Fore.RED,
"magenta": colorama.Fore.MAGENTA,
"cyan": colorama.Fore.CYAN,
}
return "{style}{color}{message}{reset}".format(
style=styles.get(style, ""),
color=colors.get(color, ""),
message=message,
reset=colorama.Style.RESET_ALL,
)
def boxify(message, border_color=None):
"""Put a message inside a box.
Args:
message (unicode): message to decorate.
border_color (unicode): name of the color to outline the box with.
"""
lines = message.split("\n")
max_width = max(_visual_width(line) for line in lines)
padding_horizontal = 5
padding_vertical = 1
box_size_horizontal = max_width + (padding_horizontal * 2)
chars = {"corner": "+", "horizontal": "-", "vertical": "|", "empty": " "}
margin = "{corner}{line}{corner}\n".format(
corner=chars["corner"], line=chars["horizontal"] * box_size_horizontal
)
padding_lines = [
"{border}{space}{border}\n".format(
border=colorize(chars["vertical"], color=border_color),
space=chars["empty"] * box_size_horizontal,
)
* padding_vertical
]
content_lines = [
"{border}{space}{content}{space}{border}\n".format(
border=colorize(chars["vertical"], color=border_color),
space=chars["empty"] * padding_horizontal,
content=_visual_center(line, max_width),
)
for line in lines
]
box_str = "{margin}{padding}{content}{padding}{margin}".format(
margin=colorize(margin, color=border_color),
padding="".join(padding_lines),
content="".join(content_lines),
)
return box_str
def _visual_width(line):
"""Get the the number of columns required to display a string"""
return len(re.sub(colorama.ansitowin32.AnsiToWin32.ANSI_CSI_RE, "", line))
def _visual_center(line, width):
"""Center align string according to it's visual width"""
spaces = max(width - _visual_width(line), 0)
left_padding = int(spaces / 2)
right_padding = spaces - left_padding
return (left_padding * " ") + line + (right_padding * " ")
def relpath(path, start=os.curdir):
path = os.fspath(path)
start = os.path.abspath(os.fspath(start))
# Windows path on different drive than curdir doesn't have relpath
if os.name == "nt" and not os.path.commonprefix(
[start, os.path.abspath(path)]
):
return path
return os.path.relpath(path, start)
def env2bool(var, undefined=False):
"""
undefined: return value if env var is unset
"""
var = os.getenv(var, None)
if var is None:
return undefined
return bool(re.search("1|y|yes|true", var, flags=re.I))
def resolve_output(inp, out):
import errno
from urllib.parse import urlparse
name = os.path.basename(os.path.normpath(urlparse(inp).path))
if not out:
ret = name
elif os.path.isdir(out):
ret = os.path.join(out, name)
else:
ret = out
if os.path.exists(ret):
raise FileExistsError(errno.EEXIST, os.strerror(errno.EEXIST), ret)
return ret
def resolve_paths(repo, out, always_local=False):
from urllib.parse import urlparse
from ..dvcfile import DVC_FILE_SUFFIX
from ..exceptions import DvcException
from ..path_info import PathInfo
from ..system import System
from .fs import contains_symlink_up_to
abspath = PathInfo(os.path.abspath(out))
dirname = os.path.dirname(abspath)
base = os.path.basename(os.path.normpath(out))
scheme = urlparse(out).scheme
if os.name == "nt" and scheme == abspath.drive[0].lower():
# urlparse interprets windows drive letters as URL scheme
scheme = ""
if scheme or not abspath.isin_or_eq(repo.root_dir):
wdir = os.getcwd()
elif contains_symlink_up_to(dirname, repo.root_dir) or (
os.path.isdir(abspath) and System.is_symlink(abspath)
):
msg = (
"Cannot add files inside symlinked directories to DVC. "
"See {} for more information."
).format(
format_link(
"https://dvc.org/doc/user-guide/troubleshooting#add-symlink"
)
)
raise DvcException(msg)
else:
wdir = dirname
out = base
if always_local:
out = base
path = os.path.join(wdir, base + DVC_FILE_SUFFIX)
return (path, wdir, out)
def format_link(link):
return "<{blue}{link}{nc}>".format(
blue=colorama.Fore.CYAN, link=link, nc=colorama.Fore.RESET
)
def error_link(name):
return format_link(f"https://error.dvc.org/{name}")
def parse_target(
target: str, default: str = None, isa_glob: bool = False
) -> Tuple[Optional[str], Optional[str]]:
from dvc.dvcfile import PIPELINE_FILE, PIPELINE_LOCK, is_valid_filename
from dvc.exceptions import DvcException
from dvc.parsing import JOIN
if not target:
return None, None
default = default or PIPELINE_FILE
if isa_glob:
path, _, glob = target.rpartition(":")
return path or default, glob or None
# look for first "@", so as not to assume too much about stage name
# eg: it might contain ":" in a generated stages from dict which might
# affect further parsing with the regex.
group, _, key = target.partition(JOIN)
match = TARGET_REGEX.match(group)
if not match:
return target, None
path, name = (
match.group("path"),
match.group("name"),
)
if name and key:
name += f"{JOIN}{key}"
if path:
if os.path.basename(path) == PIPELINE_LOCK:
raise DvcException(
"Did you mean: `{}`?".format(
target.replace(".lock", ".yaml", 1)
)
)
if not name:
ret = (target, None)
return ret if is_valid_filename(target) else ret[::-1]
if not path:
logger.trace( # type: ignore[attr-defined]
"Assuming file to be '%s'", default
)
return path or default, name
def is_exec(mode):
return bool(mode & (stat.S_IXUSR | stat.S_IXGRP | stat.S_IXOTH))
def glob_targets(targets, glob=True, recursive=True):
if not glob:
return targets
from glob import iglob
return [
exp_target
for target in targets
for exp_target in iglob(target, recursive=recursive)
]