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Instances intermittently fail to terminate #649

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ivyleavedtoadflax opened this issue Jul 7, 2021 · 24 comments · Fixed by #653
Closed

Instances intermittently fail to terminate #649

ivyleavedtoadflax opened this issue Jul 7, 2021 · 24 comments · Fixed by #653
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cloud-aws Amazon Web Services cml-runner Subcommand p0-critical Max priority (ASAP)

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@ivyleavedtoadflax
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I've had a couple of instances recently that have failed to terminate. In the most recent case this was with the --reuse flag set, having run a series of 8 queued jobs.

The instance is sitting idle, with a timeout of 60s having passed ten minutes ago. I'll need to terminate the instance manually from the command line.

In the most serious case, I had an instance run for two weeks without terminating. It took so long for us to notice because the instance name did not get set to cml-* as usual.

Here's the yml we are using:

name: train and evaluate rasa model

on:
  pull_request:
    types: [opened, synchronize]
  workflow_dispatch:

jobs:
  deploy-runner:
    runs-on: [ubuntu-latest]
    steps:
      - uses: actions/checkout@v2
      - uses: iterative/setup-cml@v1

      - name: deploy
        shell: bash
        env:
          REPO_TOKEN: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
          AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
          AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
        run: |
          cml-runner \
          --cloud aws \
          --cloud-region eu-west \
          --cloud-type=c5a.4xlarge \
          --cloud-spot true \
          --labels=cml-runner,voice-control,oms-rasa-2 \
          --idle-timeout 60 \
          --reuse
  model-training:
    needs: deploy-runner
    runs-on: [self-hosted,cml-runner]
    container: docker://dvcorg/cml:0-dvc2-base1

    steps:
    - uses: actions/checkout@v2
      with: 
        ref: ${{ github.event.pull_request.head.sha }}

    - uses: actions/setup-python@v2
      with:
        python-version: '3.8.5'
    - name: Install dependencies
      run: |
        apt-get update -y
        apt-get install make python3-pip virtualenv curl
    - name: cml
      env:
        REPO_TOKEN: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
        AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
        AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
        AWS_REGION: eu-west-1
      run: |
        python --version
        make virtualenv
        dvc repro
        echo "## Metrics" > report.md
        git fetch --prune
        dvc metrics diff main --show-md | grep "Change\|\-\-\-" >> report.md
        dvc metrics diff main --show-md | grep -E "(intent|entity|action).*weighted" | sort >> report.md
        sed "s/results\///g" -i report.md
        cml-send-comment report.md
        dvc push

    - uses: actions/upload-artifact@v2
      with:
        name: gh-artifact-${{ github.event.pull_request.head.sha }}
        path: |
          report.md
          results
        retention-days: 30
        
    - uses: EndBug/add-and-commit@v7
      if: ${{ github.ref != 'refs/heads/main' }} && ${{ github.ref != 'refs/heads/rasax/prod' }}
      with:
         add: 'dvc.lock --force'
         pull_strategy: 'NO-PULL'
         message: 'chg: dvc repro'
@DavidGOrtega DavidGOrtega added cloud-aws Amazon Web Services cml-runner Subcommand p0-critical Max priority (ASAP) labels Jul 8, 2021
@DavidGOrtega
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the instance name did not get set to cml-* as usual.

Thats very weird. Unless you have setup the name. If you never did that I would say thats not doable 🤔
Which was the name it had?

@DavidGOrtega DavidGOrtega self-assigned this Jul 8, 2021
@ivyleavedtoadflax
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ivyleavedtoadflax commented Jul 8, 2021

The instance name was either - or _, I can't recall precisely because it was a little while ago. I'm fairly sure we didn't set it manually. I've only ever seen that behaviour once though. In the most recent cases the name is correct, but the instance just fails to terminate. I had another case of this happening this morning, this time without the --reuse flag being set.

@0x2b3bfa0
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The instance name was either - or _

Do you mean that the instance was named just - without any other alphanumeric character? 🤔 I'd say that this wouldn't be a plausible scenario for instances created with the cml-runner command. Unless there is some really obscure bug causing that.

@ivyleavedtoadflax
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ivyleavedtoadflax commented Jul 8, 2021

The instance name was either - or _

Do you mean that the instance was named just - without any other alphanumeric character? I'd say that this wouldn't be a plausible scenario for instances created with the cml-runner command. Unless there is some really obscure bug causing that.

Yep precisely. It was just "-". I've really no idea what happened to the name, but I'm certain it was produced by CML because it was a spot instance of a specific type that matches those we use with CML. In any case I have only seen this behaviour once, whereas today alone I have had two CML runners fail to terminate but with the expected cml-* name. Nothing weird happened during the run, the workflow completed successfully but the timeout period expired, and the instance failed to terminate.

I've been trying to identify the contributing factors, but so far all I can say is that it has happened with a couple of instances from the c5 family, of different sizes. I'll let you know if I manage to pin down anything more specific.

@ivyleavedtoadflax
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It's really intermittent. I can run 10 jobs and it doesn't happen, then I run one on its own and it does. Very strange. For example, I just found an instance that had failed to terminate:

+----------------------+---------------+---------------------------------+----------+
|       Instance       | InstanceType  |              Name               |  State   |
+----------------------+---------------+---------------------------------+----------+
|  i-02320db7129313b32 |  g4dn.xlarge  |  cml-reviews-labeler            |  running |

the workflow on github:

image

with config:

name: Run DVC repro
on: [push]
jobs:
  deploy-runner:
    runs-on: [ubuntu-latest]
    steps:
      - uses: actions/checkout@v2
      - uses: iterative/setup-cml@v1

      - name: deploy
        shell: bash
        env:
          REPO_TOKEN: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
          AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
          AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
        run: |
          cml-runner \
          --name cml-reviews-labeler \
          --cloud aws \
          --cloud-region eu-west \
          --cloud-type=g4dn.xlarge \
          --cloud-spot true \
          --labels=cml-runner,reviews-labeler,gpu \
          --idle-timeout 300 \
          --reuse
  run:
    needs: deploy-runner
    runs-on: [self-hosted,cml-runner]
    container:
      image: docker://dvcorg/cml:0-dvc2-base1-gpu
      options: --gpus all
    steps:
      - uses: actions/checkout@v2
      - uses: actions/setup-python@v2
        with:
          python-version: '3.8.5'
      - name: cml_run
        shell: bash
        env:
          REPO_TOKEN: ${{ secrets.PERSONAL_ACCESS_TOKEN }}
          AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }}
          AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
        run: |
          # Install dependencies
          pip install -r requirements.txt
          pip install .
          # Pull data & run-cache from S3 and reproduce pipeline
          dvc pull data/raw/ER4Matches2021-02-01aBib.tsv.dvc
          dvc repro
          # Report metrics
          echo "## Metrics" > report.md
          git fetch --prune
          dvc metrics diff main --show-md | grep "Change\|\-\-\-" >> report.md
          dvc metrics diff main --show-md | grep -v "threshold-" | grep "weighted" | sort >> report.md
          sed "s/results\///g" -i report.md
          cml-send-comment report.md
 
          dvc push          

      - uses: EndBug/add-and-commit@v7
        with:
           add: 'dvc.lock --force'
           pull_strategy: 'NO-PULL'
           message: 'chg: dvc repro'

logs:

2021-07-08T23:23:43.4234096Z Found online and idle hosted runner(s) in the current repository's organization account that matches the required labels: 'ubuntu-latest'
2021-07-08T23:23:43.4234136Z Waiting for a hosted runner in 'organization' to pick this job...
2021-07-08T23:23:50.3900593Z Current runner version: '2.278.0'
2021-07-08T23:23:50.3935708Z ##[group]Operating System
2021-07-08T23:23:50.3936686Z Ubuntu
2021-07-08T23:23:50.3937208Z 20.04.2
2021-07-08T23:23:50.3937722Z LTS
2021-07-08T23:23:50.3938241Z ##[endgroup]
2021-07-08T23:23:50.3938872Z ##[group]Virtual Environment
2021-07-08T23:23:50.3939588Z Environment: ubuntu-20.04
2021-07-08T23:23:50.3940244Z Version: 20210628.1
2021-07-08T23:23:50.3941303Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210628.1/images/linux/Ubuntu2004-README.md
2021-07-08T23:23:50.3942798Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210628.1
2021-07-08T23:23:50.3943763Z ##[endgroup]
2021-07-08T23:23:50.3946093Z ##[group]GITHUB_TOKEN Permissions
2021-07-08T23:23:50.3947398Z Actions: write
2021-07-08T23:23:50.3947987Z Checks: write
2021-07-08T23:23:50.3948529Z Contents: write
2021-07-08T23:23:50.3949172Z Deployments: write
2021-07-08T23:23:50.3949884Z Discussions: write
2021-07-08T23:23:50.3950570Z Issues: write
2021-07-08T23:23:50.3951100Z Metadata: read
2021-07-08T23:23:50.3951709Z Packages: write
2021-07-08T23:23:50.3952335Z PullRequests: write
2021-07-08T23:23:50.3953065Z RepositoryProjects: write
2021-07-08T23:23:50.3953738Z SecurityEvents: write
2021-07-08T23:23:50.3954391Z Statuses: write
2021-07-08T23:23:50.3955064Z ##[endgroup]
2021-07-08T23:23:50.3958192Z Prepare workflow directory
2021-07-08T23:23:50.4635332Z Prepare all required actions
2021-07-08T23:23:50.4647247Z Getting action download info
2021-07-08T23:23:50.8238883Z Download action repository 'actions/checkout@v2'
2021-07-08T23:23:52.4352599Z Download action repository 'iterative/setup-cml@v1'
2021-07-08T23:23:52.8101499Z ##[group]Run actions/checkout@v2
2021-07-08T23:23:52.8102280Z with:
2021-07-08T23:23:52.8102923Z   repository: MantisAI/reviews_labeler
2021-07-08T23:23:52.8104086Z   token: ***
2021-07-08T23:23:52.8104630Z   ssh-strict: true
2021-07-08T23:23:52.8105491Z   persist-credentials: true
2021-07-08T23:23:52.8106167Z   clean: true
2021-07-08T23:23:52.8106702Z   fetch-depth: 1
2021-07-08T23:23:52.8107256Z   lfs: false
2021-07-08T23:23:52.8107801Z   submodules: false
2021-07-08T23:23:52.8108368Z ##[endgroup]
2021-07-08T23:23:53.0592715Z Syncing repository: MantisAI/reviews_labeler
2021-07-08T23:23:53.0626570Z ##[group]Getting Git version info
2021-07-08T23:23:53.0628327Z Working directory is '/home/runner/work/reviews_labeler/reviews_labeler'
2021-07-08T23:23:53.0685033Z [command]/usr/bin/git version
2021-07-08T23:23:53.0816523Z git version 2.32.0
2021-07-08T23:23:53.0838421Z ##[endgroup]
2021-07-08T23:23:53.0846227Z Deleting the contents of '/home/runner/work/reviews_labeler/reviews_labeler'
2021-07-08T23:23:53.0850146Z ##[group]Initializing the repository
2021-07-08T23:23:53.0854452Z [command]/usr/bin/git init /home/runner/work/reviews_labeler/reviews_labeler
2021-07-08T23:23:53.0948167Z hint: Using 'master' as the name for the initial branch. This default branch name
2021-07-08T23:23:53.0949457Z hint: is subject to change. To configure the initial branch name to use in all
2021-07-08T23:23:53.0950653Z hint: of your new repositories, which will suppress this warning, call:
2021-07-08T23:23:53.0951540Z hint: 
2021-07-08T23:23:53.0952612Z hint: 	git config --global init.defaultBranch <name>
2021-07-08T23:23:53.0953478Z hint: 
2021-07-08T23:23:53.0954530Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2021-07-08T23:23:53.0955893Z hint: 'development'. The just-created branch can be renamed via this command:
2021-07-08T23:23:53.0956830Z hint: 
2021-07-08T23:23:53.0957875Z hint: 	git branch -m <name>
2021-07-08T23:23:53.0968834Z Initialized empty Git repository in /home/runner/work/reviews_labeler/reviews_labeler/.git/
2021-07-08T23:23:53.0980289Z [command]/usr/bin/git remote add origin https://github.com/MantisAI/reviews_labeler
2021-07-08T23:23:53.1021906Z ##[endgroup]
2021-07-08T23:23:53.1022976Z ##[group]Disabling automatic garbage collection
2021-07-08T23:23:53.1027135Z [command]/usr/bin/git config --local gc.auto 0
2021-07-08T23:23:53.1061920Z ##[endgroup]
2021-07-08T23:23:53.1066843Z ##[group]Setting up auth
2021-07-08T23:23:53.1074308Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-07-08T23:23:53.1107658Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-07-08T23:23:53.1555620Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-07-08T23:23:53.1587738Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-07-08T23:23:53.1815649Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2021-07-08T23:23:53.5176939Z ##[endgroup]
2021-07-08T23:23:53.5234231Z ##[group]Fetching the repository
2021-07-08T23:23:53.5236983Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +119bead7657a76bba5f508c22c85a0da26f515a3:refs/remotes/origin/feature/name-cml-instances
2021-07-08T23:23:53.5239999Z remote: Enumerating objects: 65, done.        
2021-07-08T23:23:53.5240901Z remote: Counting objects:   1% (1/65)        
2021-07-08T23:23:53.5241732Z remote: Counting objects:   3% (2/65)        
2021-07-08T23:23:53.5242544Z remote: Counting objects:   4% (3/65)        
2021-07-08T23:23:53.5243335Z remote: Counting objects:   6% (4/65)        
2021-07-08T23:23:53.5244455Z remote: Counting objects:   7% (5/65)        
2021-07-08T23:23:53.5245298Z remote: Counting objects:   9% (6/65)        
2021-07-08T23:23:53.5246111Z remote: Counting objects:  10% (7/65)        
2021-07-08T23:23:53.5246916Z remote: Counting objects:  12% (8/65)        
2021-07-08T23:23:53.5247723Z remote: Counting objects:  13% (9/65)        
2021-07-08T23:23:53.5248527Z remote: Counting objects:  15% (10/65)        
2021-07-08T23:23:53.5249338Z remote: Counting objects:  16% (11/65)        
2021-07-08T23:23:53.5250135Z remote: Counting objects:  18% (12/65)        
2021-07-08T23:23:53.5250983Z remote: Counting objects:  20% (13/65)        
2021-07-08T23:23:53.5251782Z remote: Counting objects:  21% (14/65)        
2021-07-08T23:23:53.5252564Z remote: Counting objects:  23% (15/65)        
2021-07-08T23:23:53.5253369Z remote: Counting objects:  24% (16/65)        
2021-07-08T23:23:53.5254171Z remote: Counting objects:  26% (17/65)        
2021-07-08T23:23:53.5254979Z remote: Counting objects:  27% (18/65)        
2021-07-08T23:23:53.5255787Z remote: Counting objects:  29% (19/65)        
2021-07-08T23:23:53.5256568Z remote: Counting objects:  30% (20/65)        
2021-07-08T23:23:53.5257372Z remote: Counting objects:  32% (21/65)        
2021-07-08T23:23:53.5258168Z remote: Counting objects:  33% (22/65)        
2021-07-08T23:23:53.5258965Z remote: Counting objects:  35% (23/65)        
2021-07-08T23:23:53.5259776Z remote: Counting objects:  36% (24/65)        
2021-07-08T23:23:53.5260575Z remote: Counting objects:  38% (25/65)        
2021-07-08T23:23:53.5261353Z remote: Counting objects:  40% (26/65)        
2021-07-08T23:23:53.5262150Z remote: Counting objects:  41% (27/65)        
2021-07-08T23:23:53.5262948Z remote: Counting objects:  43% (28/65)        
2021-07-08T23:23:53.5263739Z remote: Counting objects:  44% (29/65)        
2021-07-08T23:23:53.5264896Z remote: Counting objects:  46% (30/65)        
2021-07-08T23:23:53.5266554Z remote: Counting objects:  47% (31/65)        
2021-07-08T23:23:53.5267364Z remote: Counting objects:  49% (32/65)        
2021-07-08T23:23:53.5268170Z remote: Counting objects:  50% (33/65)        
2021-07-08T23:23:53.5268978Z remote: Counting objects:  52% (34/65)        
2021-07-08T23:23:53.5269780Z remote: Counting objects:  53% (35/65)        
2021-07-08T23:23:53.5270583Z remote: Counting objects:  55% (36/65)        
2021-07-08T23:23:53.5271583Z remote: Counting objects:  56% (37/65)        
2021-07-08T23:23:53.5272385Z remote: Counting objects:  58% (38/65)        
2021-07-08T23:23:53.5273190Z remote: Counting objects:  60% (39/65)        
2021-07-08T23:23:53.5273987Z remote: Counting objects:  61% (40/65)        
2021-07-08T23:23:53.5274782Z remote: Counting objects:  63% (41/65)        
2021-07-08T23:23:53.5275584Z remote: Counting objects:  64% (42/65)        
2021-07-08T23:23:53.5276364Z remote: Counting objects:  66% (43/65)        
2021-07-08T23:23:53.5277156Z remote: Counting objects:  67% (44/65)        
2021-07-08T23:23:53.5277955Z remote: Counting objects:  69% (45/65)        
2021-07-08T23:23:53.5278759Z remote: Counting objects:  70% (46/65)        
2021-07-08T23:23:53.5279554Z remote: Counting objects:  72% (47/65)        
2021-07-08T23:23:53.5280333Z remote: Counting objects:  73% (48/65)        
2021-07-08T23:23:53.5281177Z remote: Counting objects:  75% (49/65)        
2021-07-08T23:23:53.5281969Z remote: Counting objects:  76% (50/65)        
2021-07-08T23:23:53.5282774Z remote: Counting objects:  78% (51/65)        
2021-07-08T23:23:53.5283565Z remote: Counting objects:  80% (52/65)        
2021-07-08T23:23:53.5284354Z remote: Counting objects:  81% (53/65)        
2021-07-08T23:23:53.5285143Z remote: Counting objects:  83% (54/65)        
2021-07-08T23:23:53.5285979Z remote: Counting objects:  84% (55/65)        
2021-07-08T23:23:53.5286775Z remote: Counting objects:  86% (56/65)        
2021-07-08T23:23:53.5287567Z remote: Counting objects:  87% (57/65)        
2021-07-08T23:23:53.5288393Z remote: Counting objects:  89% (58/65)        
2021-07-08T23:23:53.5289274Z remote: Counting objects:  90% (59/65)        
2021-07-08T23:23:53.5290092Z remote: Counting objects:  92% (60/65)        
2021-07-08T23:23:53.5290884Z remote: Counting objects:  93% (61/65)        
2021-07-08T23:23:53.5291675Z remote: Counting objects:  95% (62/65)        
2021-07-08T23:23:53.5292469Z remote: Counting objects:  96% (63/65)        
2021-07-08T23:23:53.5293253Z remote: Counting objects:  98% (64/65)        
2021-07-08T23:23:53.5294049Z remote: Counting objects: 100% (65/65)        
2021-07-08T23:23:53.5294871Z remote: Counting objects: 100% (65/65), done.        
2021-07-08T23:23:53.5295717Z remote: Compressing objects:   1% (1/54)        
2021-07-08T23:23:53.5296569Z remote: Compressing objects:   3% (2/54)        
2021-07-08T23:23:53.5297430Z remote: Compressing objects:   5% (3/54)        
2021-07-08T23:23:53.5298259Z remote: Compressing objects:   7% (4/54)        
2021-07-08T23:23:53.5299107Z remote: Compressing objects:   9% (5/54)        
2021-07-08T23:23:53.5299991Z remote: Compressing objects:  11% (6/54)        
2021-07-08T23:23:53.5300834Z remote: Compressing objects:  12% (7/54)        
2021-07-08T23:23:53.5301686Z remote: Compressing objects:  14% (8/54)        
2021-07-08T23:23:53.5302511Z remote: Compressing objects:  16% (9/54)        
2021-07-08T23:23:53.5303355Z remote: Compressing objects:  18% (10/54)        
2021-07-08T23:23:53.5304213Z remote: Compressing objects:  20% (11/54)        
2021-07-08T23:23:53.5305054Z remote: Compressing objects:  22% (12/54)        
2021-07-08T23:23:53.5306103Z remote: Compressing objects:  24% (13/54)        
2021-07-08T23:23:53.5306934Z remote: Compressing objects:  25% (14/54)        
2021-07-08T23:23:53.5307778Z remote: Compressing objects:  27% (15/54)        
2021-07-08T23:23:53.5308628Z remote: Compressing objects:  29% (16/54)        
2021-07-08T23:23:53.5309471Z remote: Compressing objects:  31% (17/54)        
2021-07-08T23:23:53.5310313Z remote: Compressing objects:  33% (18/54)        
2021-07-08T23:23:53.5311162Z remote: Compressing objects:  35% (19/54)        
2021-07-08T23:23:53.5311987Z remote: Compressing objects:  37% (20/54)        
2021-07-08T23:23:53.5312831Z remote: Compressing objects:  38% (21/54)        
2021-07-08T23:23:53.5313671Z remote: Compressing objects:  40% (22/54)        
2021-07-08T23:23:53.5314515Z remote: Compressing objects:  42% (23/54)        
2021-07-08T23:23:53.5315494Z remote: Compressing objects:  44% (24/54)        
2021-07-08T23:23:53.5316316Z remote: Compressing objects:  46% (25/54)        
2021-07-08T23:23:53.5317156Z remote: Compressing objects:  48% (26/54)        
2021-07-08T23:23:53.5318004Z remote: Compressing objects:  50% (27/54)        
2021-07-08T23:23:53.5318997Z remote: Compressing objects:  51% (28/54)        
2021-07-08T23:23:53.5319845Z remote: Compressing objects:  53% (29/54)        
2021-07-08T23:23:53.5320694Z remote: Compressing objects:  55% (30/54)        
2021-07-08T23:23:53.5321650Z remote: Compressing objects:  57% (31/54)        
2021-07-08T23:23:53.5322487Z remote: Compressing objects:  59% (32/54)        
2021-07-08T23:23:53.5323335Z remote: Compressing objects:  61% (33/54)        
2021-07-08T23:23:53.5324173Z remote: Compressing objects:  62% (34/54)        
2021-07-08T23:23:53.5325011Z remote: Compressing objects:  64% (35/54)        
2021-07-08T23:23:53.5325854Z remote: Compressing objects:  66% (36/54)        
2021-07-08T23:23:53.5326701Z remote: Compressing objects:  68% (37/54)        
2021-07-08T23:23:53.5327526Z remote: Compressing objects:  70% (38/54)        
2021-07-08T23:23:53.5328368Z remote: Compressing objects:  72% (39/54)        
2021-07-08T23:23:53.5329207Z remote: Compressing objects:  74% (40/54)        
2021-07-08T23:23:53.5330046Z remote: Compressing objects:  75% (41/54)        
2021-07-08T23:23:53.5330887Z remote: Compressing objects:  77% (42/54)        
2021-07-08T23:23:53.5331709Z remote: Compressing objects:  79% (43/54)        
2021-07-08T23:23:53.5332590Z remote: Compressing objects:  81% (44/54)        
2021-07-08T23:23:53.5333549Z remote: Compressing objects:  83% (45/54)        
2021-07-08T23:23:53.5334408Z remote: Compressing objects:  85% (46/54)        
2021-07-08T23:23:53.5335250Z remote: Compressing objects:  87% (47/54)        
2021-07-08T23:23:53.5336093Z remote: Compressing objects:  88% (48/54)        
2021-07-08T23:23:53.5336916Z remote: Compressing objects:  90% (49/54)        
2021-07-08T23:23:53.5337701Z remote: Compressing objects:  92% (50/54)        
2021-07-08T23:23:53.5338548Z remote: Compressing objects:  94% (51/54)        
2021-07-08T23:23:53.5339388Z remote: Compressing objects:  96% (52/54)        
2021-07-08T23:23:53.5340225Z remote: Compressing objects:  98% (53/54)        
2021-07-08T23:23:53.5341046Z remote: Compressing objects: 100% (54/54)        
2021-07-08T23:23:53.5347945Z remote: Compressing objects: 100% (54/54), done.        
2021-07-08T23:23:53.5349519Z remote: Total 65 (delta 9), reused 33 (delta 4), pack-reused 0        
2021-07-08T23:23:53.5350601Z From https://github.com/MantisAI/reviews_labeler
2021-07-08T23:23:53.5352183Z  * [new ref]         119bead7657a76bba5f508c22c85a0da26f515a3 -> origin/feature/name-cml-instances
2021-07-08T23:23:53.5353376Z ##[endgroup]
2021-07-08T23:23:53.5354171Z ##[group]Determining the checkout info
2021-07-08T23:23:53.5354934Z ##[endgroup]
2021-07-08T23:23:53.5355633Z ##[group]Checking out the ref
2021-07-08T23:23:53.5357168Z [command]/usr/bin/git checkout --progress --force -B feature/name-cml-instances refs/remotes/origin/feature/name-cml-instances
2021-07-08T23:23:53.5358752Z Switched to a new branch 'feature/name-cml-instances'
2021-07-08T23:23:53.5360315Z Branch 'feature/name-cml-instances' set up to track remote branch 'feature/name-cml-instances' from 'origin'.
2021-07-08T23:23:53.5361433Z ##[endgroup]
2021-07-08T23:23:53.5362356Z [command]/usr/bin/git log -1 --format='%H'
2021-07-08T23:23:53.5440998Z '119bead7657a76bba5f508c22c85a0da26f515a3'
2021-07-08T23:23:53.5513737Z ##[group]Run iterative/setup-cml@v1
2021-07-08T23:23:53.5514381Z with:
2021-07-08T23:23:53.5514884Z   version: latest
2021-07-08T23:23:53.5515438Z ##[endgroup]
2021-07-08T23:23:54.4351302Z Uninstalling previous CML
2021-07-08T23:23:54.8379955Z Installing CML version latest
2021-07-08T23:24:20.3319408Z ##[group]Run cml-runner \
2021-07-08T23:24:20.3320158Z �[36;1mcml-runner \�[0m
2021-07-08T23:24:20.3320763Z �[36;1m--name cml-reviews-labeler \�[0m
2021-07-08T23:24:20.3321500Z �[36;1m--cloud aws \�[0m
2021-07-08T23:24:20.3322029Z �[36;1m--cloud-region eu-west \�[0m
2021-07-08T23:24:20.3322652Z �[36;1m--cloud-type=g4dn.xlarge \�[0m
2021-07-08T23:24:20.3323233Z �[36;1m--cloud-spot true \�[0m
2021-07-08T23:24:20.3324030Z �[36;1m--labels=cml-runner,reviews-labeler,gpu \�[0m
2021-07-08T23:24:20.3324810Z �[36;1m--idle-timeout 300 \�[0m
2021-07-08T23:24:20.3325305Z �[36;1m--reuse�[0m
2021-07-08T23:24:20.3374313Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0}
2021-07-08T23:24:20.3375205Z env:
2021-07-08T23:24:20.3376745Z   REPO_TOKEN: ***
2021-07-08T23:24:20.3377332Z   AWS_ACCESS_KEY_ID: ***
2021-07-08T23:24:20.3378086Z   AWS_SECRET_ACCESS_KEY: ***
2021-07-08T23:24:20.3378544Z ##[endgroup]
2021-07-08T23:24:24.8863562Z Preparing workdir /home/runner/.cml/cml-ohoafo592f...
2021-07-08T23:24:24.8889306Z Deploying cloud runner plan...
2021-07-08T23:24:24.8890238Z Terraform apply...
2021-07-08T23:25:43.1541289Z {"awsSecurityGroup":null,"cloud":"aws","driver":"github","id":"iterative-2vj927gzcfj7k","idleTimeout":300,"image":"iterative-cml","instanceGpu":null,"instanceHddSize":35,"instanceIp":"63.34.8.149","instanceLaunchTime":"2021-07-08T23:24:34Z","instanceType":"g4dn.xlarge","labels":"cml-runner,reviews-labeler,gpu","name":"cml-reviews-labeler","region":"eu-west","repo":"https://github.com/MantisAI/reviews_labeler","single":false,"spot":true,"spotPrice":-1,"timeouts":null}
2021-07-08T23:25:43.1704830Z Post job cleanup.
2021-07-08T23:25:43.2797561Z [command]/usr/bin/git version
2021-07-08T23:25:43.2844807Z git version 2.32.0
2021-07-08T23:25:43.2881010Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-07-08T23:25:43.2917756Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-07-08T23:25:43.3150394Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-07-08T23:25:43.3175317Z http.https://github.com/.extraheader
2021-07-08T23:25:43.3187566Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2021-07-08T23:25:43.3220552Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-07-08T23:25:43.3544518Z Cleaning up orphan processes

2021-07-08T23:25:46.9352708Z Found online and idle self-hosted runner(s) in the current repository that matches the required labels: 'self-hosted , cml-runner'
2021-07-08T23:25:46.9352816Z Waiting for a self-hosted runner to pick up this job...
2021-07-08T23:25:51.3934670Z Current runner version: '2.278.0'
2021-07-08T23:25:51.3938362Z Runner name: 'cml-reviews-labeler'
2021-07-08T23:25:51.3939123Z Runner group name: 'Default'
2021-07-08T23:25:51.3940176Z Machine name: 'ip-172-31-29-187'
2021-07-08T23:25:51.3943741Z ##[group]GITHUB_TOKEN Permissions
2021-07-08T23:25:51.3944888Z Actions: write
2021-07-08T23:25:51.3945413Z Checks: write
2021-07-08T23:25:51.3945929Z Contents: write
2021-07-08T23:25:51.3946427Z Deployments: write
2021-07-08T23:25:51.3947034Z Discussions: write
2021-07-08T23:25:51.3947561Z Issues: write
2021-07-08T23:25:51.3948071Z Metadata: read
2021-07-08T23:25:51.3948566Z Packages: write
2021-07-08T23:25:51.3949146Z PullRequests: write
2021-07-08T23:25:51.3949779Z RepositoryProjects: write
2021-07-08T23:25:51.3950426Z SecurityEvents: write
2021-07-08T23:25:51.3950939Z Statuses: write
2021-07-08T23:25:51.3951742Z ##[endgroup]
2021-07-08T23:25:51.3954554Z Prepare workflow directory
2021-07-08T23:25:51.4829632Z Prepare all required actions
2021-07-08T23:25:51.4840233Z Getting action download info
2021-07-08T23:25:52.2166513Z Download action repository 'actions/checkout@v2'
2021-07-08T23:25:52.8568828Z Download action repository 'actions/setup-python@v2'
2021-07-08T23:25:53.3754837Z Download action repository 'EndBug/add-and-commit@v7'
2021-07-08T23:25:54.1213948Z ##[group]Checking docker version
2021-07-08T23:25:54.1219623Z ##[command]/usr/bin/docker version --format '{{.Server.APIVersion}}'
2021-07-08T23:25:55.4083301Z '1.41'
2021-07-08T23:25:55.4107403Z Docker daemon API version: '1.41'
2021-07-08T23:25:55.4108217Z ##[command]/usr/bin/docker version --format '{{.Client.APIVersion}}'
2021-07-08T23:25:55.4686682Z '1.41'
2021-07-08T23:25:55.4713985Z Docker client API version: '1.41'
2021-07-08T23:25:55.4721132Z ##[endgroup]
2021-07-08T23:25:55.4721759Z ##[group]Clean up resources from previous jobs
2021-07-08T23:25:55.4725266Z ##[command]/usr/bin/docker ps --all --quiet --no-trunc --filter "label=babfd3"
2021-07-08T23:25:55.5082645Z ##[command]/usr/bin/docker network prune --force --filter "label=babfd3"
2021-07-08T23:25:55.5433732Z ##[endgroup]
2021-07-08T23:25:55.5434231Z ##[group]Create local container network
2021-07-08T23:25:55.5440165Z ##[command]/usr/bin/docker network create --label babfd3 github_network_c993a3e938394dadab7be3d4a1673ad2
2021-07-08T23:25:55.6373593Z 6a6d3b03d87622ff73d1e6495c60e950685f433587463302c6b8460a8f1a731f
2021-07-08T23:25:55.6398770Z ##[endgroup]
2021-07-08T23:25:55.6404771Z ##[group]Starting job container
2021-07-08T23:25:55.6410261Z ##[command]/usr/bin/docker pull dvcorg/cml:0-dvc2-base1-gpu
2021-07-08T23:25:57.0764082Z 0-dvc2-base1-gpu: Pulling from dvcorg/cml
2021-07-08T23:25:57.0781984Z c549ccf8d472: Pulling fs layer
2021-07-08T23:25:57.0783969Z cbb944094a69: Pulling fs layer
2021-07-08T23:25:57.0785754Z 02f8947abc6a: Pulling fs layer
2021-07-08T23:25:57.0788637Z ff9dd64fdd0e: Pulling fs layer
2021-07-08T23:25:57.0789761Z f0c6f5915213: Pulling fs layer
2021-07-08T23:25:57.0790538Z 1788f817274b: Pulling fs layer
2021-07-08T23:25:57.0791137Z d5404e57146f: Pulling fs layer
2021-07-08T23:25:57.0791871Z c9e135ffe5e1: Pulling fs layer
2021-07-08T23:25:57.0792588Z 0192df195290: Pulling fs layer
2021-07-08T23:25:57.0793061Z ff9dd64fdd0e: Waiting
2021-07-08T23:25:57.0793498Z f0c6f5915213: Waiting
2021-07-08T23:25:57.0794141Z 1788f817274b: Waiting
2021-07-08T23:25:57.0794779Z d5404e57146f: Waiting
2021-07-08T23:25:57.0795367Z c9e135ffe5e1: Waiting
2021-07-08T23:25:57.0796134Z 921e2bae498a: Pulling fs layer
2021-07-08T23:25:57.0796674Z c6be0e45accc: Pulling fs layer
2021-07-08T23:25:57.0797104Z 728c955bdbc3: Pulling fs layer
2021-07-08T23:25:57.0797577Z 66acccabcef1: Pulling fs layer
2021-07-08T23:25:57.0797992Z 0192df195290: Waiting
2021-07-08T23:25:57.0798387Z bd79a0697354: Pulling fs layer
2021-07-08T23:25:57.0798800Z 7026f0e16f5c: Pulling fs layer
2021-07-08T23:25:57.0803033Z 51f5a816386d: Pulling fs layer
2021-07-08T23:25:57.0803831Z 578c248e79a9: Pulling fs layer
2021-07-08T23:25:57.0804613Z 728c955bdbc3: Waiting
2021-07-08T23:25:57.0805332Z 921e2bae498a: Waiting
2021-07-08T23:25:57.0805921Z c6be0e45accc: Waiting
2021-07-08T23:25:57.0806299Z bd79a0697354: Waiting
2021-07-08T23:25:57.0806695Z 66acccabcef1: Waiting
2021-07-08T23:25:57.0807085Z 7026f0e16f5c: Waiting
2021-07-08T23:25:57.0807435Z 51f5a816386d: Waiting
2021-07-08T23:25:57.0807801Z 578c248e79a9: Waiting
2021-07-08T23:25:57.4612203Z 02f8947abc6a: Verifying Checksum
2021-07-08T23:25:57.4613194Z 02f8947abc6a: Download complete
2021-07-08T23:25:57.4776522Z cbb944094a69: Verifying Checksum
2021-07-08T23:25:57.4777475Z cbb944094a69: Download complete
2021-07-08T23:25:57.5476731Z c549ccf8d472: Verifying Checksum
2021-07-08T23:25:57.7584685Z c549ccf8d472: Download complete
2021-07-08T23:25:57.7585728Z ff9dd64fdd0e: Verifying Checksum
2021-07-08T23:25:57.7586708Z ff9dd64fdd0e: Download complete
2021-07-08T23:25:57.8165312Z f0c6f5915213: Verifying Checksum
2021-07-08T23:25:57.8166157Z f0c6f5915213: Download complete
2021-07-08T23:25:58.1058745Z d5404e57146f: Verifying Checksum
2021-07-08T23:25:58.1059917Z d5404e57146f: Download complete
2021-07-08T23:25:58.4219944Z 0192df195290: Verifying Checksum
2021-07-08T23:25:58.4221117Z 0192df195290: Download complete
2021-07-08T23:25:59.6394487Z c549ccf8d472: Pull complete
2021-07-08T23:25:59.9206642Z 921e2bae498a: Verifying Checksum
2021-07-08T23:25:59.9207779Z 921e2bae498a: Download complete
2021-07-08T23:26:00.3984963Z cbb944094a69: Pull complete
2021-07-08T23:26:01.3798735Z 02f8947abc6a: Pull complete
2021-07-08T23:26:01.5376418Z ff9dd64fdd0e: Pull complete
2021-07-08T23:26:01.6634931Z f0c6f5915213: Pull complete
2021-07-08T23:26:01.6944347Z c6be0e45accc: Verifying Checksum
2021-07-08T23:26:01.6945409Z c6be0e45accc: Download complete
2021-07-08T23:26:02.9615151Z 728c955bdbc3: Verifying Checksum
2021-07-08T23:26:02.9616139Z 728c955bdbc3: Download complete
2021-07-08T23:26:02.9617035Z 66acccabcef1: Verifying Checksum
2021-07-08T23:26:02.9617891Z 66acccabcef1: Download complete
2021-07-08T23:26:03.3868898Z c9e135ffe5e1: Verifying Checksum
2021-07-08T23:26:03.3869885Z c9e135ffe5e1: Download complete
2021-07-08T23:26:03.7872389Z 7026f0e16f5c: Verifying Checksum
2021-07-08T23:26:03.7874466Z 7026f0e16f5c: Download complete
2021-07-08T23:26:03.8149419Z bd79a0697354: Verifying Checksum
2021-07-08T23:26:03.8150013Z bd79a0697354: Download complete
2021-07-08T23:26:04.1205316Z 578c248e79a9: Verifying Checksum
2021-07-08T23:26:04.1206157Z 578c248e79a9: Download complete
2021-07-08T23:26:04.7704859Z 51f5a816386d: Verifying Checksum
2021-07-08T23:26:04.7705726Z 51f5a816386d: Download complete
2021-07-08T23:26:06.7747265Z 1788f817274b: Verifying Checksum
2021-07-08T23:26:06.7748319Z 1788f817274b: Download complete
2021-07-08T23:26:41.5778662Z 1788f817274b: Pull complete
2021-07-08T23:26:44.6291987Z d5404e57146f: Pull complete
2021-07-08T23:27:08.0765691Z c9e135ffe5e1: Pull complete
2021-07-08T23:27:08.7653782Z 0192df195290: Pull complete
2021-07-08T23:27:15.3873774Z 921e2bae498a: Pull complete
2021-07-08T23:27:22.8539103Z c6be0e45accc: Pull complete
2021-07-08T23:27:23.8862128Z 728c955bdbc3: Pull complete
2021-07-08T23:27:24.7334259Z 66acccabcef1: Pull complete
2021-07-08T23:27:28.8675641Z bd79a0697354: Pull complete
2021-07-08T23:27:29.6548505Z 7026f0e16f5c: Pull complete
2021-07-08T23:27:34.8077097Z 51f5a816386d: Pull complete
2021-07-08T23:27:35.2046783Z 578c248e79a9: Pull complete
2021-07-08T23:27:35.4158118Z Digest: sha256:00427acc7891232f08246e7221db4af49bfb21145244da20297597fe99abb5bd
2021-07-08T23:27:35.5302097Z Status: Downloaded newer image for dvcorg/cml:0-dvc2-base1-gpu
2021-07-08T23:27:35.5850250Z docker.io/dvcorg/cml:0-dvc2-base1-gpu
2021-07-08T23:27:35.5917840Z ##[command]/usr/bin/docker create --name dc14e8de5b4d4832ae0a870f6b3c2dc2_dvcorgcml0dvc2base1gpu_e393ba --label babfd3 --workdir /__w/reviews_labeler/reviews_labeler --network github_network_c993a3e938394dadab7be3d4a1673ad2 --gpus all -e "HOME=/github/home" -e GITHUB_ACTIONS=true -e CI=true -v "/var/run/docker.sock":"/var/run/docker.sock" -v "/tmp/tmp.J3FemZIebE/.cml/cml-uuebd6gqmm/_work":"/__w" -v "/tmp/tmp.J3FemZIebE/.cml/cml-uuebd6gqmm/externals":"/__e":ro -v "/tmp/tmp.J3FemZIebE/.cml/cml-uuebd6gqmm/_work/_temp":"/__w/_temp" -v "/tmp/tmp.J3FemZIebE/.cml/cml-uuebd6gqmm/_work/_actions":"/__w/_actions" -v "/tmp/tmp.J3FemZIebE/.cml/cml-uuebd6gqmm/_work/_tool":"/__w/_tool" -v "/tmp/tmp.J3FemZIebE/.cml/cml-uuebd6gqmm/_work/_temp/_github_home":"/github/home" -v "/tmp/tmp.J3FemZIebE/.cml/cml-uuebd6gqmm/_work/_temp/_github_workflow":"/github/workflow" --entrypoint "tail" dvcorg/cml:0-dvc2-base1-gpu "-f" "/dev/null"
2021-07-08T23:27:43.9521892Z ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a
2021-07-08T23:27:43.9554871Z ##[command]/usr/bin/docker start ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a
2021-07-08T23:27:47.8200668Z ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a
2021-07-08T23:27:47.8229262Z ##[command]/usr/bin/docker ps --all --filter id=ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a --filter status=running --no-trunc --format "{{.ID}} {{.Status}}"
2021-07-08T23:27:47.8580607Z ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a Up Less than a second
2021-07-08T23:27:47.8607271Z ##[command]/usr/bin/docker inspect --format "{{range .Config.Env}}{{println .}}{{end}}" ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a
2021-07-08T23:27:47.8951458Z HOME=/github/home
2021-07-08T23:27:47.8952544Z GITHUB_ACTIONS=true
2021-07-08T23:27:47.8953221Z CI=true
2021-07-08T23:27:47.8953916Z PATH=/usr/local/nvidia/bin:/usr/local/cuda/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
2021-07-08T23:27:47.8954496Z CUDA_VERSION=11.0.3
2021-07-08T23:27:47.8954987Z LD_LIBRARY_PATH=/usr/local/nvidia/lib:/usr/local/nvidia/lib64
2021-07-08T23:27:47.8955503Z NVIDIA_VISIBLE_DEVICES=all
2021-07-08T23:27:47.8956019Z NVIDIA_DRIVER_CAPABILITIES=compute,utility
2021-07-08T23:27:47.8956780Z NVIDIA_REQUIRE_CUDA=cuda>=11.0 brand=tesla,driver>=418,driver<419 brand=tesla,driver>=440,driver<441 driver>=450
2021-07-08T23:27:47.8957422Z NCCL_VERSION=2.9.6
2021-07-08T23:27:47.8957808Z CUDNN_VERSION=8.0.5.39
2021-07-08T23:27:47.8958239Z DEBIAN_FRONTEND=noninteractive
2021-07-08T23:27:47.8958680Z LANG=en_US.UTF-8
2021-07-08T23:27:47.8959056Z LANGUAGE=en_US:en
2021-07-08T23:27:47.8959433Z LC_ALL=en_US.UTF-8
2021-07-08T23:27:47.8959818Z RUNNER_PATH=/home/runner
2021-07-08T23:27:47.8960239Z RUNNER_ALLOW_RUNASROOT=1
2021-07-08T23:27:47.8960614Z IN_DOCKER=1
2021-07-08T23:27:47.8987482Z ##[endgroup]
2021-07-08T23:27:47.8988341Z ##[group]Waiting for all services to be ready
2021-07-08T23:27:47.8989569Z ##[endgroup]
2021-07-08T23:27:47.9212804Z ##[group]Run actions/checkout@v2
2021-07-08T23:27:47.9213398Z with:
2021-07-08T23:27:47.9213857Z   repository: MantisAI/reviews_labeler
2021-07-08T23:27:47.9214937Z   token: ***
2021-07-08T23:27:47.9215371Z   ssh-strict: true
2021-07-08T23:27:47.9215916Z   persist-credentials: true
2021-07-08T23:27:47.9216383Z   clean: true
2021-07-08T23:27:47.9216834Z   fetch-depth: 1
2021-07-08T23:27:47.9217450Z   lfs: false
2021-07-08T23:27:47.9217914Z   submodules: false
2021-07-08T23:27:47.9218357Z ##[endgroup]
2021-07-08T23:27:47.9235904Z ##[command]/usr/bin/docker exec  ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a sh -c "cat /etc/*release | grep ^ID"
2021-07-08T23:27:48.2283242Z Syncing repository: MantisAI/reviews_labeler
2021-07-08T23:27:48.2284622Z ##[group]Getting Git version info
2021-07-08T23:27:48.2286302Z Working directory is '/__w/reviews_labeler/reviews_labeler'
2021-07-08T23:27:48.2287406Z [command]/usr/bin/git version
2021-07-08T23:27:48.2288473Z git version 2.32.0
2021-07-08T23:27:48.2299755Z ##[endgroup]
2021-07-08T23:27:48.2306574Z Deleting the contents of '/__w/reviews_labeler/reviews_labeler'
2021-07-08T23:27:48.2310241Z ##[group]Initializing the repository
2021-07-08T23:27:48.2313910Z [command]/usr/bin/git init /__w/reviews_labeler/reviews_labeler
2021-07-08T23:27:48.2347916Z hint: Using 'master' as the name for the initial branch. This default branch name
2021-07-08T23:27:48.2348819Z hint: is subject to change. To configure the initial branch name to use in all
2021-07-08T23:27:48.2349770Z hint: of your new repositories, which will suppress this warning, call:
2021-07-08T23:27:48.2350407Z hint: 
2021-07-08T23:27:48.2351207Z hint: 	git config --global init.defaultBranch <name>
2021-07-08T23:27:48.2351972Z hint: 
2021-07-08T23:27:48.2353230Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2021-07-08T23:27:48.2354687Z hint: 'development'. The just-created branch can be renamed via this command:
2021-07-08T23:27:48.2355361Z hint: 
2021-07-08T23:27:48.2355953Z hint: 	git branch -m <name>
2021-07-08T23:27:48.2356598Z Initialized empty Git repository in /__w/reviews_labeler/reviews_labeler/.git/
2021-07-08T23:27:48.2362286Z [command]/usr/bin/git remote add origin https://github.com/MantisAI/reviews_labeler
2021-07-08T23:27:48.3038671Z ##[endgroup]
2021-07-08T23:27:48.3039714Z ##[group]Disabling automatic garbage collection
2021-07-08T23:27:48.3043807Z [command]/usr/bin/git config --local gc.auto 0
2021-07-08T23:27:48.3068237Z ##[endgroup]
2021-07-08T23:27:48.3073794Z ##[group]Setting up auth
2021-07-08T23:27:48.3081152Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-07-08T23:27:48.3107202Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-07-08T23:27:48.3324318Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-07-08T23:27:48.3349518Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-07-08T23:27:48.3563630Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2021-07-08T23:27:48.3601034Z ##[endgroup]
2021-07-08T23:27:48.3601725Z ##[group]Fetching the repository
2021-07-08T23:27:48.3608832Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +119bead7657a76bba5f508c22c85a0da26f515a3:refs/remotes/origin/feature/name-cml-instances
2021-07-08T23:27:48.8510896Z remote: Enumerating objects: 65, done.        
2021-07-08T23:27:48.8512309Z remote: Counting objects:   1% (1/65)        
2021-07-08T23:27:48.8513481Z remote: Counting objects:   3% (2/65)        
2021-07-08T23:27:48.8616393Z remote: Counting objects:   4% (3/65)        
2021-07-08T23:27:48.8620760Z remote: Counting objects:   6% (4/65)        
2021-07-08T23:27:48.8621259Z remote: Counting objects:   7% (5/65)        
2021-07-08T23:27:48.8621747Z remote: Counting objects:   9% (6/65)        
2021-07-08T23:27:48.8622238Z remote: Counting objects:  10% (7/65)        
2021-07-08T23:27:48.8622724Z remote: Counting objects:  12% (8/65)        
2021-07-08T23:27:48.8623192Z remote: Counting objects:  13% (9/65)        
2021-07-08T23:27:48.8623686Z remote: Counting objects:  15% (10/65)        
2021-07-08T23:27:48.8624180Z remote: Counting objects:  16% (11/65)        
2021-07-08T23:27:48.8624671Z remote: Counting objects:  18% (12/65)        
2021-07-08T23:27:48.8625144Z remote: Counting objects:  20% (13/65)        
2021-07-08T23:27:48.8625629Z remote: Counting objects:  21% (14/65)        
2021-07-08T23:27:48.8626115Z remote: Counting objects:  23% (15/65)        
2021-07-08T23:27:48.8626601Z remote: Counting objects:  24% (16/65)        
2021-07-08T23:27:48.8627075Z remote: Counting objects:  26% (17/65)        
2021-07-08T23:27:48.8627559Z remote: Counting objects:  27% (18/65)        
2021-07-08T23:27:48.8628047Z remote: Counting objects:  29% (19/65)        
2021-07-08T23:27:48.8628537Z remote: Counting objects:  30% (20/65)        
2021-07-08T23:27:48.8629011Z remote: Counting objects:  32% (21/65)        
2021-07-08T23:27:48.8629491Z remote: Counting objects:  33% (22/65)        
2021-07-08T23:27:48.8629970Z remote: Counting objects:  35% (23/65)        
2021-07-08T23:27:48.8630539Z remote: Counting objects:  36% (24/65)        
2021-07-08T23:27:48.8631007Z remote: Counting objects:  38% (25/65)        
2021-07-08T23:27:48.8632049Z remote: Counting objects:  40% (26/65)        
2021-07-08T23:27:48.8632720Z remote: Counting objects:  41% (27/65)        
2021-07-08T23:27:48.8633506Z remote: Counting objects:  43% (28/65)        
2021-07-08T23:27:48.8641345Z remote: Counting objects:  44% (29/65)        
2021-07-08T23:27:48.8641948Z remote: Counting objects:  46% (30/65)        
2021-07-08T23:27:48.8642549Z remote: Counting objects:  47% (31/65)        
2021-07-08T23:27:48.8643043Z remote: Counting objects:  49% (32/65)        
2021-07-08T23:27:48.8643529Z remote: Counting objects:  50% (33/65)        
2021-07-08T23:27:48.8644021Z remote: Counting objects:  52% (34/65)        
2021-07-08T23:27:48.8644496Z remote: Counting objects:  53% (35/65)        
2021-07-08T23:27:48.8644983Z remote: Counting objects:  55% (36/65)        
2021-07-08T23:27:48.8645475Z remote: Counting objects:  56% (37/65)        
2021-07-08T23:27:48.8645956Z remote: Counting objects:  58% (38/65)        
2021-07-08T23:27:48.8646429Z remote: Counting objects:  60% (39/65)        
2021-07-08T23:27:48.8646907Z remote: Counting objects:  61% (40/65)        
2021-07-08T23:27:48.8647394Z remote: Counting objects:  63% (41/65)        
2021-07-08T23:27:48.8647880Z remote: Counting objects:  64% (42/65)        
2021-07-08T23:27:48.8648345Z remote: Counting objects:  66% (43/65)        
2021-07-08T23:27:48.8648827Z remote: Counting objects:  67% (44/65)        
2021-07-08T23:27:48.8649311Z remote: Counting objects:  69% (45/65)        
2021-07-08T23:27:48.8649792Z remote: Counting objects:  70% (46/65)        
2021-07-08T23:27:48.8650264Z remote: Counting objects:  72% (47/65)        
2021-07-08T23:27:48.8650746Z remote: Counting objects:  73% (48/65)        
2021-07-08T23:27:48.8651291Z remote: Counting objects:  75% (49/65)        
2021-07-08T23:27:48.8651772Z remote: Counting objects:  76% (50/65)        
2021-07-08T23:27:48.8652258Z remote: Counting objects:  78% (51/65)        
2021-07-08T23:27:48.8652726Z remote: Counting objects:  80% (52/65)        
2021-07-08T23:27:48.8653210Z remote: Counting objects:  81% (53/65)        
2021-07-08T23:27:48.8653696Z remote: Counting objects:  83% (54/65)        
2021-07-08T23:27:48.8654179Z remote: Counting objects:  84% (55/65)        
2021-07-08T23:27:48.8654651Z remote: Counting objects:  86% (56/65)        
2021-07-08T23:27:48.8655123Z remote: Counting objects:  87% (57/65)        
2021-07-08T23:27:48.8655778Z remote: Counting objects:  89% (58/65)        
2021-07-08T23:27:48.8656260Z remote: Counting objects:  90% (59/65)        
2021-07-08T23:27:48.8656722Z remote: Counting objects:  92% (60/65)        
2021-07-08T23:27:48.8657200Z remote: Counting objects:  93% (61/65)        
2021-07-08T23:27:48.8657681Z remote: Counting objects:  95% (62/65)        
2021-07-08T23:27:48.8658164Z remote: Counting objects:  96% (63/65)        
2021-07-08T23:27:48.8658652Z remote: Counting objects:  98% (64/65)        
2021-07-08T23:27:48.8659120Z remote: Counting objects: 100% (65/65)        
2021-07-08T23:27:48.8659625Z remote: Counting objects: 100% (65/65), done.        
2021-07-08T23:27:48.8660163Z remote: Compressing objects:   1% (1/54)        
2021-07-08T23:27:48.8660693Z remote: Compressing objects:   3% (2/54)        
2021-07-08T23:27:48.8661196Z remote: Compressing objects:   5% (3/54)        
2021-07-08T23:27:48.8661707Z remote: Compressing objects:   7% (4/54)        
2021-07-08T23:27:48.8662237Z remote: Compressing objects:   9% (5/54)        
2021-07-08T23:27:48.8662765Z remote: Compressing objects:  11% (6/54)        
2021-07-08T23:27:48.8663274Z remote: Compressing objects:  12% (7/54)        
2021-07-08T23:27:48.8663797Z remote: Compressing objects:  14% (8/54)        
2021-07-08T23:27:48.8664319Z remote: Compressing objects:  16% (9/54)        
2021-07-08T23:27:48.8664846Z remote: Compressing objects:  18% (10/54)        
2021-07-08T23:27:48.8665430Z remote: Compressing objects:  20% (11/54)        
2021-07-08T23:27:48.8665946Z remote: Compressing objects:  22% (12/54)        
2021-07-08T23:27:48.8666463Z remote: Compressing objects:  24% (13/54)        
2021-07-08T23:27:48.8666973Z remote: Compressing objects:  25% (14/54)        
2021-07-08T23:27:48.8667474Z remote: Compressing objects:  27% (15/54)        
2021-07-08T23:27:48.8667992Z remote: Compressing objects:  29% (16/54)        
2021-07-08T23:27:48.8668510Z remote: Compressing objects:  31% (17/54)        
2021-07-08T23:27:48.8669040Z remote: Compressing objects:  33% (18/54)        
2021-07-08T23:27:48.8669554Z remote: Compressing objects:  35% (19/54)        
2021-07-08T23:27:48.8670078Z remote: Compressing objects:  37% (20/54)        
2021-07-08T23:27:48.8670599Z remote: Compressing objects:  38% (21/54)        
2021-07-08T23:27:48.8671120Z remote: Compressing objects:  40% (22/54)        
2021-07-08T23:27:48.8671870Z remote: Compressing objects:  42% (23/54)        
2021-07-08T23:27:48.8672380Z remote: Compressing objects:  44% (24/54)        
2021-07-08T23:27:48.8672892Z remote: Compressing objects:  46% (25/54)        
2021-07-08T23:27:48.8673409Z remote: Compressing objects:  48% (26/54)        
2021-07-08T23:27:48.8673910Z remote: Compressing objects:  50% (27/54)        
2021-07-08T23:27:48.8674429Z remote: Compressing objects:  51% (28/54)        
2021-07-08T23:27:48.8674935Z remote: Compressing objects:  53% (29/54)        
2021-07-08T23:27:48.8675445Z remote: Compressing objects:  55% (30/54)        
2021-07-08T23:27:48.8675961Z remote: Compressing objects:  57% (31/54)        
2021-07-08T23:27:48.8676461Z remote: Compressing objects:  59% (32/54)        
2021-07-08T23:27:48.8676966Z remote: Compressing objects:  61% (33/54)        
2021-07-08T23:27:48.8677481Z remote: Compressing objects:  62% (34/54)        
2021-07-08T23:27:48.8677995Z remote: Compressing objects:  64% (35/54)        
2021-07-08T23:27:48.8678498Z remote: Compressing objects:  66% (36/54)        
2021-07-08T23:27:48.8679020Z remote: Compressing objects:  68% (37/54)        
2021-07-08T23:27:48.8679531Z remote: Compressing objects:  70% (38/54)        
2021-07-08T23:27:48.8680057Z remote: Compressing objects:  72% (39/54)        
2021-07-08T23:27:48.8680566Z remote: Compressing objects:  74% (40/54)        
2021-07-08T23:27:48.8681080Z remote: Compressing objects:  75% (41/54)        
2021-07-08T23:27:48.8681589Z remote: Compressing objects:  77% (42/54)        
2021-07-08T23:27:48.8682099Z remote: Compressing objects:  79% (43/54)        
2021-07-08T23:27:48.8682683Z remote: Compressing objects:  81% (44/54)        
2021-07-08T23:27:48.8683210Z remote: Compressing objects:  83% (45/54)        
2021-07-08T23:27:48.8683724Z remote: Compressing objects:  85% (46/54)        
2021-07-08T23:27:48.8684247Z remote: Compressing objects:  87% (47/54)        
2021-07-08T23:27:48.8684755Z remote: Compressing objects:  88% (48/54)        
2021-07-08T23:27:48.8685278Z remote: Compressing objects:  90% (49/54)        
2021-07-08T23:27:48.8685807Z remote: Compressing objects:  92% (50/54)        
2021-07-08T23:27:48.8686330Z remote: Compressing objects:  94% (51/54)        
2021-07-08T23:27:48.8686843Z remote: Compressing objects:  96% (52/54)        
2021-07-08T23:27:48.8687366Z remote: Compressing objects:  98% (53/54)        
2021-07-08T23:27:48.8687890Z remote: Compressing objects: 100% (54/54)        
2021-07-08T23:27:48.8688442Z remote: Compressing objects: 100% (54/54), done.        
2021-07-08T23:27:48.8835627Z remote: Total 65 (delta 9), reused 33 (delta 4), pack-reused 0        
2021-07-08T23:27:48.8916261Z From https://github.com/MantisAI/reviews_labeler
2021-07-08T23:27:48.8917782Z  * [new ref]         119bead7657a76bba5f508c22c85a0da26f515a3 -> origin/feature/name-cml-instances
2021-07-08T23:27:48.8934626Z ##[endgroup]
2021-07-08T23:27:48.8935196Z ##[group]Determining the checkout info
2021-07-08T23:27:48.8938120Z ##[endgroup]
2021-07-08T23:27:48.8938928Z ##[group]Checking out the ref
2021-07-08T23:27:48.8943099Z [command]/usr/bin/git checkout --progress --force -B feature/name-cml-instances refs/remotes/origin/feature/name-cml-instances
2021-07-08T23:27:48.9020423Z Switched to a new branch 'feature/name-cml-instances'
2021-07-08T23:27:48.9022188Z Branch 'feature/name-cml-instances' set up to track remote branch 'feature/name-cml-instances' from 'origin'.
2021-07-08T23:27:48.9025184Z ##[endgroup]
2021-07-08T23:27:48.9058238Z [command]/usr/bin/git log -1 --format='%H'
2021-07-08T23:27:48.9080344Z '119bead7657a76bba5f508c22c85a0da26f515a3'
2021-07-08T23:27:48.9246614Z ##[group]Run actions/setup-python@v2
2021-07-08T23:27:48.9247038Z with:
2021-07-08T23:27:48.9247423Z   python-version: 3.8.5
2021-07-08T23:27:48.9248202Z   token: ***
2021-07-08T23:27:48.9248552Z ##[endgroup]
2021-07-08T23:27:48.9252778Z ##[command]/usr/bin/docker exec  ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a sh -c "cat /etc/*release | grep ^ID"
2021-07-08T23:27:49.1787822Z Version 3.8.5 was not found in the local cache
2021-07-08T23:27:49.7519020Z Version 3.8.5 is available for downloading
2021-07-08T23:27:49.7521363Z Download from "https://github.com/actions/python-versions/releases/download/3.8.5-96743/python-3.8.5-linux-20.04-x64.tar.gz"
2021-07-08T23:27:52.8276195Z Extract downloaded archive
2021-07-08T23:27:52.8358620Z [command]/usr/bin/tar xz --warning=no-unknown-keyword -C /__w/_temp/f0183fdb-1b4c-4bc4-a59e-02be2171eaa1 -f /__w/_temp/613cc8a9-a460-4a95-96b3-f08a6e5b8c16
2021-07-08T23:27:54.4472446Z Execute installation script
2021-07-08T23:27:54.4552167Z Check if Python hostedtoolcache folder exist...
2021-07-08T23:27:54.4553293Z Creating Python hostedtoolcache folder...
2021-07-08T23:27:54.4563046Z Create Python 3.8.5 folder
2021-07-08T23:27:54.4574218Z Copy Python binaries to hostedtoolcache folder
2021-07-08T23:27:54.8359352Z Create additional symlinks (Required for the UsePythonVersion Azure Pipelines task and the setup-python GitHub Action)
2021-07-08T23:27:54.8388769Z Upgrading PIP...
2021-07-08T23:27:56.2762155Z Looking in links: /tmp/tmpyfta_jf1
2021-07-08T23:27:56.2770854Z Requirement already satisfied: setuptools in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (47.1.0)
2021-07-08T23:27:56.2972329Z Requirement already satisfied: pip in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (20.1.1)
2021-07-08T23:27:57.2746912Z Collecting pip
2021-07-08T23:27:57.2920330Z Downloading pip-21.1.3-py3-none-any.whl (1.5 MB)
2021-07-08T23:27:57.4403532Z Installing collected packages: pip
2021-07-08T23:27:58.3919997Z Successfully installed pip-21.1.3
2021-07-08T23:27:58.5634253Z Create complete file
2021-07-08T23:27:58.5661738Z Successfully setup CPython (3.8.5)
2021-07-08T23:27:58.5807146Z ##[group]Run # Install dependencies
2021-07-08T23:27:58.5807847Z �[36;1m# Install dependencies�[0m
2021-07-08T23:27:58.5808384Z �[36;1mpip install -r requirements.txt�[0m
2021-07-08T23:27:58.5808865Z �[36;1mpip install .�[0m
2021-07-08T23:27:58.5809206Z �[36;1m�[0m
2021-07-08T23:27:58.5809672Z �[36;1m# Pull data & run-cache from S3 and reproduce pipeline�[0m
2021-07-08T23:27:58.5810157Z �[36;1m�[0m
2021-07-08T23:27:58.5810711Z �[36;1mdvc pull data/raw/ER4Matches2021-02-01aBib.tsv.dvc�[0m
2021-07-08T23:27:58.5811276Z �[36;1mdvc repro�[0m
2021-07-08T23:27:58.5811593Z �[36;1m�[0m
2021-07-08T23:27:58.5811941Z �[36;1m# Report metrics�[0m
2021-07-08T23:27:58.5812381Z �[36;1mecho "## Metrics" > report.md�[0m
2021-07-08T23:27:58.5812830Z �[36;1mgit fetch --prune�[0m
2021-07-08T23:27:58.5813170Z �[36;1m�[0m
2021-07-08T23:27:58.5813662Z �[36;1mdvc metrics diff main --show-md | grep "Change\|\-\-\-" >> report.md�[0m
2021-07-08T23:27:58.5814467Z �[36;1mdvc metrics diff main --show-md | grep -v "threshold-" | grep "weighted" | sort >> report.md�[0m
2021-07-08T23:27:58.5815142Z �[36;1msed "s/results\///g" -i report.md�[0m
2021-07-08T23:27:58.5815537Z �[36;1m�[0m
2021-07-08T23:27:58.5815963Z �[36;1mcml-send-comment report.md�[0m
2021-07-08T23:27:58.5816379Z �[36;1m�[0m
2021-07-08T23:27:58.5816787Z �[36;1mdvc push          �[0m
2021-07-08T23:27:58.5818909Z shell: bash --noprofile --norc -e -o pipefail {0}
2021-07-08T23:27:58.5819504Z env:
2021-07-08T23:27:58.5819944Z   pythonLocation: /__w/_tool/Python/3.8.5/x64
2021-07-08T23:27:58.5820588Z   LD_LIBRARY_PATH: /__w/_tool/Python/3.8.5/x64/lib:/usr/local/nvidia/lib:/usr/local/nvidia/lib64
2021-07-08T23:27:58.5821962Z   REPO_TOKEN: ***
2021-07-08T23:27:58.5822466Z   AWS_ACCESS_KEY_ID: ***
2021-07-08T23:27:58.5823121Z   AWS_SECRET_ACCESS_KEY: ***
2021-07-08T23:27:58.5823521Z ##[endgroup]
2021-07-08T23:27:59.1698949Z Collecting https://s3-us-west-2.amazonaws.com/ai2-s2-scispacy/releases/v0.4.0/en_ner_bionlp13cg_md-0.4.0.tar.gz (from -r requirements.txt (line 127))
2021-07-08T23:27:59.7332880Z   Downloading https://s3-us-west-2.amazonaws.com/ai2-s2-scispacy/releases/v0.4.0/en_ner_bionlp13cg_md-0.4.0.tar.gz (125.1 MB)
2021-07-08T23:28:13.1106934Z Collecting aiobotocore==1.3.0
2021-07-08T23:28:13.1246570Z   Downloading aiobotocore-1.3.0.tar.gz (48 kB)
2021-07-08T23:28:13.8793538Z Collecting aiohttp==3.7.4.post0
2021-07-08T23:28:13.8858962Z   Downloading aiohttp-3.7.4.post0-cp38-cp38-manylinux2014_x86_64.whl (1.5 MB)
2021-07-08T23:28:13.9434039Z Collecting aioitertools==0.7.1
2021-07-08T23:28:13.9464132Z   Downloading aioitertools-0.7.1-py3-none-any.whl (20 kB)
2021-07-08T23:28:13.9735254Z Collecting appdirs==1.4.4
2021-07-08T23:28:13.9765706Z   Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
2021-07-08T23:28:14.0093850Z Collecting async-timeout==3.0.1
2021-07-08T23:28:14.0122252Z   Downloading async_timeout-3.0.1-py3-none-any.whl (8.2 kB)
2021-07-08T23:28:14.0442171Z Collecting atpublic==2.3
2021-07-08T23:28:14.0472055Z   Downloading atpublic-2.3.tar.gz (16 kB)
2021-07-08T23:28:14.2770253Z Collecting attrs==21.2.0
2021-07-08T23:28:14.2801732Z   Downloading attrs-21.2.0-py2.py3-none-any.whl (53 kB)
2021-07-08T23:28:14.3255545Z Collecting black==21.6b0
2021-07-08T23:28:14.3292373Z   Downloading black-21.6b0-py3-none-any.whl (140 kB)
2021-07-08T23:28:14.3985766Z Collecting blis==0.7.4
2021-07-08T23:28:14.4019755Z   Downloading blis-0.7.4-cp38-cp38-manylinux2014_x86_64.whl (9.8 MB)
2021-07-08T23:28:15.0443554Z Collecting boto3==1.17.49
2021-07-08T23:28:15.0482047Z   Downloading boto3-1.17.49-py2.py3-none-any.whl (131 kB)
2021-07-08T23:28:15.6837719Z Collecting botocore==1.20.49
2021-07-08T23:28:15.6873981Z   Downloading botocore-1.20.49-py2.py3-none-any.whl (7.4 MB)
2021-07-08T23:28:15.8350294Z Collecting catalogue==2.0.4
2021-07-08T23:28:15.8385259Z   Downloading catalogue-2.0.4-py3-none-any.whl (16 kB)
2021-07-08T23:28:15.8807435Z Collecting certifi==2021.5.30
2021-07-08T23:28:15.8839716Z   Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB)
2021-07-08T23:28:16.1877380Z Collecting cffi==1.14.5
2021-07-08T23:28:16.1911743Z   Downloading cffi-1.14.5-cp38-cp38-manylinux1_x86_64.whl (411 kB)
2021-07-08T23:28:16.2281857Z Collecting chardet==4.0.0
2021-07-08T23:28:16.2312040Z   Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB)
2021-07-08T23:28:16.2803535Z Collecting click==7.1.2
2021-07-08T23:28:16.2834762Z   Downloading click-7.1.2-py2.py3-none-any.whl (82 kB)
2021-07-08T23:28:16.3269217Z Collecting colorama==0.4.4
2021-07-08T23:28:16.3299293Z   Downloading colorama-0.4.4-py2.py3-none-any.whl (16 kB)
2021-07-08T23:28:16.3629226Z Collecting commonmark==0.9.1
2021-07-08T23:28:16.3658478Z   Downloading commonmark-0.9.1-py2.py3-none-any.whl (51 kB)
2021-07-08T23:28:16.3947118Z Collecting configobj==5.0.6
2021-07-08T23:28:16.3977970Z   Downloading configobj-5.0.6.tar.gz (33 kB)
2021-07-08T23:28:16.6219015Z Collecting conllu==4.4
2021-07-08T23:28:16.7669222Z   Downloading conllu-4.4-py2.py3-none-any.whl (15 kB)
2021-07-08T23:28:17.2375375Z Collecting coverage==5.5
2021-07-08T23:28:17.2417154Z   Downloading coverage-5.5-cp38-cp38-manylinux2010_x86_64.whl (245 kB)
2021-07-08T23:28:17.2970707Z Collecting cymem==2.0.5
2021-07-08T23:28:17.3005180Z   Downloading cymem-2.0.5-cp38-cp38-manylinux2014_x86_64.whl (35 kB)
2021-07-08T23:28:17.3408139Z Collecting decorator==4.4.2
2021-07-08T23:28:17.3438040Z   Downloading decorator-4.4.2-py2.py3-none-any.whl (9.2 kB)
2021-07-08T23:28:17.3733321Z Collecting dictdiffer==0.8.1
2021-07-08T23:28:17.3767594Z   Downloading dictdiffer-0.8.1-py2.py3-none-any.whl (16 kB)
2021-07-08T23:28:17.4324621Z Collecting diskcache==5.2.1
2021-07-08T23:28:17.4357564Z   Downloading diskcache-5.2.1-py3-none-any.whl (44 kB)
2021-07-08T23:28:17.4667062Z Collecting distlib==0.3.2
2021-07-08T23:28:17.4701089Z   Downloading distlib-0.3.2-py2.py3-none-any.whl (338 kB)
2021-07-08T23:28:18.4826175Z Collecting distro==1.5.0
2021-07-08T23:28:18.4827992Z   Downloading distro-1.5.0-py2.py3-none-any.whl (18 kB)
2021-07-08T23:28:18.4828626Z Collecting dpath==2.0.1
2021-07-08T23:28:18.4829487Z   Downloading dpath-2.0.1.tar.gz (21 kB)
2021-07-08T23:28:18.4829985Z Collecting dulwich==0.20.23
2021-07-08T23:28:18.4831047Z   Downloading dulwich-0.20.23-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (530 kB)
2021-07-08T23:28:18.4832085Z Collecting dvc==2.4.3
2021-07-08T23:28:18.4832934Z   Downloading dvc-2.4.3-py2.py3-none-any.whl (635 kB)
2021-07-08T23:28:18.4833625Z Collecting filelock==3.0.12
2021-07-08T23:28:18.4834456Z   Downloading filelock-3.0.12-py3-none-any.whl (7.6 kB)
2021-07-08T23:28:18.4835253Z Collecting flatten-dict==0.4.0
2021-07-08T23:28:18.4836183Z   Downloading flatten_dict-0.4.0-py2.py3-none-any.whl (9.5 kB)
2021-07-08T23:28:18.4836844Z Collecting flufl.lock==3.2
2021-07-08T23:28:18.4837540Z   Downloading flufl.lock-3.2.tar.gz (19 kB)
2021-07-08T23:28:18.4907919Z Collecting fsspec==2021.6.1
2021-07-08T23:28:18.4945831Z   Downloading fsspec-2021.6.1-py3-none-any.whl (115 kB)
2021-07-08T23:28:18.5319318Z Collecting ftfy==6.0.3
2021-07-08T23:28:18.5350428Z   Downloading ftfy-6.0.3.tar.gz (64 kB)
2021-07-08T23:28:18.7615965Z Collecting funcy==1.16
2021-07-08T23:28:18.7652959Z   Downloading funcy-1.16-py2.py3-none-any.whl (32 kB)
2021-07-08T23:28:18.8011446Z Collecting future==0.18.2
2021-07-08T23:28:18.8043578Z   Downloading future-0.18.2.tar.gz (829 kB)
2021-07-08T23:28:19.1626673Z Collecting gitdb==4.0.7
2021-07-08T23:28:19.1658793Z   Downloading gitdb-4.0.7-py3-none-any.whl (63 kB)
2021-07-08T23:28:19.2310258Z Collecting GitPython==3.1.18
2021-07-08T23:28:19.2342533Z   Downloading GitPython-3.1.18-py3-none-any.whl (170 kB)
2021-07-08T23:28:19.2635658Z Collecting grandalf==0.6
2021-07-08T23:28:19.2669612Z   Downloading grandalf-0.6-py3-none-any.whl (31 kB)
2021-07-08T23:28:19.3006737Z Collecting huggingface-hub==0.0.12
2021-07-08T23:28:19.3040372Z   Downloading huggingface_hub-0.0.12-py3-none-any.whl (37 kB)
2021-07-08T23:28:19.3515540Z Collecting idna==2.10
2021-07-08T23:28:19.3548116Z   Downloading idna-2.10-py2.py3-none-any.whl (58 kB)
2021-07-08T23:28:19.3830441Z Collecting iniconfig==1.1.1
2021-07-08T23:28:19.3861224Z   Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB)
2021-07-08T23:28:19.4296544Z Collecting Jinja2==3.0.1
2021-07-08T23:28:19.4328237Z   Downloading Jinja2-3.0.1-py3-none-any.whl (133 kB)
2021-07-08T23:28:19.4672010Z Collecting jmespath==0.10.0
2021-07-08T23:28:19.4702637Z   Downloading jmespath-0.10.0-py2.py3-none-any.whl (24 kB)
2021-07-08T23:28:19.5288430Z Collecting joblib==1.0.1
2021-07-08T23:28:19.5320281Z   Downloading joblib-1.0.1-py3-none-any.whl (303 kB)
2021-07-08T23:28:19.5662333Z Collecting jsonpath-ng==1.5.2
2021-07-08T23:28:19.5693610Z   Downloading jsonpath_ng-1.5.2-py3-none-any.whl (28 kB)
2021-07-08T23:28:19.6066685Z Collecting mailchecker==4.0.9
2021-07-08T23:28:19.6111093Z   Downloading mailchecker-4.0.9.tar.gz (201 kB)
2021-07-08T23:28:19.8904568Z Collecting MarkupSafe==2.0.1
2021-07-08T23:28:19.8938282Z   Downloading MarkupSafe-2.0.1-cp38-cp38-manylinux2010_x86_64.whl (30 kB)
2021-07-08T23:28:20.3338914Z Collecting multidict==5.1.0
2021-07-08T23:28:20.3378407Z   Downloading multidict-5.1.0-cp38-cp38-manylinux2014_x86_64.whl (159 kB)
2021-07-08T23:28:20.4048926Z Collecting murmurhash==1.0.5
2021-07-08T23:28:20.4083619Z   Downloading murmurhash-1.0.5-cp38-cp38-manylinux2014_x86_64.whl (20 kB)
2021-07-08T23:28:20.4360142Z Collecting mypy-extensions==0.4.3
2021-07-08T23:28:20.4390620Z   Downloading mypy_extensions-0.4.3-py2.py3-none-any.whl (4.5 kB)
2021-07-08T23:28:20.4640185Z Collecting nanotime==0.5.2
2021-07-08T23:28:20.4669781Z   Downloading nanotime-0.5.2.tar.gz (3.2 kB)
2021-07-08T23:28:20.7025297Z Collecting networkx==2.5.1
2021-07-08T23:28:20.7068945Z   Downloading networkx-2.5.1-py3-none-any.whl (1.6 MB)
2021-07-08T23:28:20.7884523Z Collecting nmslib==2.1.1
2021-07-08T23:28:20.7920573Z   Downloading nmslib-2.1.1-cp38-cp38-manylinux2010_x86_64.whl (13.4 MB)
2021-07-08T23:28:21.4984877Z Collecting numpy==1.21.0
2021-07-08T23:28:21.5023691Z   Downloading numpy-1.21.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (15.7 MB)
2021-07-08T23:28:21.7591159Z Collecting packaging==20.9
2021-07-08T23:28:21.7623476Z   Downloading packaging-20.9-py2.py3-none-any.whl (40 kB)
2021-07-08T23:28:22.0402481Z Collecting pandas==1.2.5
2021-07-08T23:28:22.0438993Z   Downloading pandas-1.2.5-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (9.7 MB)
2021-07-08T23:28:22.2037224Z Collecting pathspec==0.8.1
2021-07-08T23:28:22.2068691Z   Downloading pathspec-0.8.1-py2.py3-none-any.whl (28 kB)
2021-07-08T23:28:22.2445278Z Collecting pathy==0.6.0
2021-07-08T23:28:22.2479168Z   Downloading pathy-0.6.0-py3-none-any.whl (42 kB)
2021-07-08T23:28:22.3364254Z Collecting phonenumbers==8.12.26
2021-07-08T23:28:22.3424540Z   Downloading phonenumbers-8.12.26-py2.py3-none-any.whl (2.6 MB)
2021-07-08T23:28:22.4172781Z Collecting pluggy==0.13.1
2021-07-08T23:28:22.4202387Z   Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
2021-07-08T23:28:22.4467636Z Collecting ply==3.11
2021-07-08T23:28:22.4497315Z   Downloading ply-3.11-py2.py3-none-any.whl (49 kB)
2021-07-08T23:28:22.5159929Z Collecting preshed==3.0.5
2021-07-08T23:28:22.5196648Z   Downloading preshed-3.0.5-cp38-cp38-manylinux2014_x86_64.whl (130 kB)
2021-07-08T23:28:22.7489745Z Collecting psutil==5.8.0
2021-07-08T23:28:22.7530907Z   Downloading psutil-5.8.0-cp38-cp38-manylinux2010_x86_64.whl (296 kB)
2021-07-08T23:28:22.8066268Z Collecting py==1.10.0
2021-07-08T23:28:22.8096637Z   Downloading py-1.10.0-py2.py3-none-any.whl (97 kB)
2021-07-08T23:28:22.8833133Z Collecting pyasn1==0.4.8
2021-07-08T23:28:22.8862856Z   Downloading pyasn1-0.4.8-py2.py3-none-any.whl (77 kB)
2021-07-08T23:28:22.9808613Z Collecting pybind11==2.6.1
2021-07-08T23:28:22.9849981Z   Downloading pybind11-2.6.1-py2.py3-none-any.whl (188 kB)
2021-07-08T23:28:23.0177471Z Collecting pycparser==2.20
2021-07-08T23:28:23.0209637Z   Downloading pycparser-2.20-py2.py3-none-any.whl (112 kB)
2021-07-08T23:28:23.1845291Z Collecting pydantic==1.7.4
2021-07-08T23:28:23.1882667Z   Downloading pydantic-1.7.4-cp38-cp38-manylinux2014_x86_64.whl (12.3 MB)
2021-07-08T23:28:23.3684371Z Collecting pydot==1.4.2
2021-07-08T23:28:23.3714698Z   Downloading pydot-1.4.2-py2.py3-none-any.whl (21 kB)
2021-07-08T23:28:23.4862374Z Collecting pygit2==1.6.1
2021-07-08T23:28:23.4941135Z   Downloading pygit2-1.6.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB)
2021-07-08T23:28:23.6125633Z Collecting Pygments==2.9.0
2021-07-08T23:28:23.6164116Z   Downloading Pygments-2.9.0-py3-none-any.whl (1.0 MB)
2021-07-08T23:28:23.6594895Z Collecting pygtrie==2.4.2
2021-07-08T23:28:23.6625374Z   Downloading pygtrie-2.4.2.tar.gz (35 kB)
2021-07-08T23:28:23.9086744Z Collecting pyparsing==2.4.7
2021-07-08T23:28:23.9119060Z   Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
2021-07-08T23:28:24.0212827Z Collecting pysbd==0.3.4
2021-07-08T23:28:24.0252066Z   Downloading pysbd-0.3.4-py3-none-any.whl (71 kB)
2021-07-08T23:28:24.1401688Z Collecting pytest==6.2.4
2021-07-08T23:28:24.1433684Z   Downloading pytest-6.2.4-py3-none-any.whl (280 kB)
2021-07-08T23:28:24.1944909Z Collecting pytest-cov==2.12.1
2021-07-08T23:28:24.1974686Z   Downloading pytest_cov-2.12.1-py2.py3-none-any.whl (20 kB)
2021-07-08T23:28:24.2389252Z Collecting python-benedict==0.24.0
2021-07-08T23:28:24.2423171Z   Downloading python_benedict-0.24.0-py3-none-any.whl (40 kB)
2021-07-08T23:28:24.2822154Z Collecting python-dateutil==2.8.1
2021-07-08T23:28:24.2853445Z   Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
2021-07-08T23:28:24.3371475Z Collecting python-fsutil==0.5.0
2021-07-08T23:28:24.3404466Z   Downloading python_fsutil-0.5.0-py3-none-any.whl (11 kB)
2021-07-08T23:28:24.3742431Z Collecting python-slugify==5.0.2
2021-07-08T23:28:24.3937087Z   Downloading python_slugify-5.0.2-py2.py3-none-any.whl (6.7 kB)
2021-07-08T23:28:24.5247734Z Collecting pytz==2021.1
2021-07-08T23:28:24.5281425Z   Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB)
2021-07-08T23:28:24.6288484Z Collecting PyYAML==5.4.1
2021-07-08T23:28:24.6321785Z   Downloading PyYAML-5.4.1-cp38-cp38-manylinux1_x86_64.whl (662 kB)
2021-07-08T23:28:25.3898563Z Collecting regex==2021.4.4
2021-07-08T23:28:25.3948547Z   Downloading regex-2021.4.4-cp38-cp38-manylinux2014_x86_64.whl (733 kB)
2021-07-08T23:28:25.5951419Z Collecting requests==2.25.1
2021-07-08T23:28:25.5983710Z   Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB)
2021-07-08T23:28:25.7447091Z Collecting rich==10.4.0
2021-07-08T23:28:25.7485595Z   Downloading rich-10.4.0-py3-none-any.whl (206 kB)
2021-07-08T23:28:26.3289641Z Collecting ruamel.yaml==0.17.10
2021-07-08T23:28:26.3325119Z   Downloading ruamel.yaml-0.17.10-py3-none-any.whl (108 kB)
2021-07-08T23:28:26.4590409Z Collecting ruamel.yaml.clib==0.2.4
2021-07-08T23:28:26.4648624Z   Downloading ruamel.yaml.clib-0.2.4-cp38-cp38-manylinux1_x86_64.whl (570 kB)
2021-07-08T23:28:26.5479540Z Collecting s3fs==2021.6.1
2021-07-08T23:28:26.5510203Z   Downloading s3fs-2021.6.1-py3-none-any.whl (25 kB)
2021-07-08T23:28:26.6966603Z Collecting s3transfer==0.3.7
2021-07-08T23:28:26.6997670Z   Downloading s3transfer-0.3.7-py2.py3-none-any.whl (73 kB)
2021-07-08T23:28:26.7588155Z Collecting sacremoses==0.0.45
2021-07-08T23:28:26.7632666Z   Downloading sacremoses-0.0.45-py3-none-any.whl (895 kB)
2021-07-08T23:28:27.2536009Z Collecting scikit-learn==0.24.2
2021-07-08T23:28:27.2571303Z   Downloading scikit_learn-0.24.2-cp38-cp38-manylinux2010_x86_64.whl (24.9 MB)
2021-07-08T23:28:28.1090781Z Collecting scipy==1.7.0
2021-07-08T23:28:28.1128555Z   Downloading scipy-1.7.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (28.4 MB)
2021-07-08T23:28:28.8896273Z Collecting scispacy==0.4.0
2021-07-08T23:28:29.0715194Z   Downloading scispacy-0.4.0-py3-none-any.whl (44 kB)
2021-07-08T23:28:29.1065682Z Collecting shortuuid==1.0.1
2021-07-08T23:28:29.1100416Z   Downloading shortuuid-1.0.1-py3-none-any.whl (7.5 kB)
2021-07-08T23:28:29.1533825Z Collecting shtab==1.3.6
2021-07-08T23:28:29.1566753Z   Downloading shtab-1.3.6-py2.py3-none-any.whl (12 kB)
2021-07-08T23:28:29.1930428Z Collecting six==1.16.0
2021-07-08T23:28:29.1959645Z   Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
2021-07-08T23:28:29.2202227Z Collecting sklearn==0.0
2021-07-08T23:28:29.2230716Z   Downloading sklearn-0.0.tar.gz (1.1 kB)
2021-07-08T23:28:29.4401831Z Collecting smart-open==5.1.0
2021-07-08T23:28:29.4433813Z   Downloading smart_open-5.1.0-py3-none-any.whl (57 kB)
2021-07-08T23:28:29.4773624Z Collecting smmap==4.0.0
2021-07-08T23:28:29.4805288Z   Downloading smmap-4.0.0-py2.py3-none-any.whl (24 kB)
2021-07-08T23:28:29.6863359Z Collecting spacy==3.0.6
2021-07-08T23:28:29.6900630Z   Downloading spacy-3.0.6-cp38-cp38-manylinux2014_x86_64.whl (13.0 MB)
2021-07-08T23:28:29.9020804Z Collecting spacy-legacy==3.0.6
2021-07-08T23:28:29.9073411Z   Downloading spacy_legacy-3.0.6-py2.py3-none-any.whl (12 kB)
2021-07-08T23:28:30.0115362Z Collecting srsly==2.4.1
2021-07-08T23:28:30.0158021Z   Downloading srsly-2.4.1-cp38-cp38-manylinux2014_x86_64.whl (458 kB)
2021-07-08T23:28:30.0539893Z Collecting tabulate==0.8.9
2021-07-08T23:28:30.0569505Z   Downloading tabulate-0.8.9-py3-none-any.whl (25 kB)
2021-07-08T23:28:30.0842226Z Collecting text-unidecode==1.3
2021-07-08T23:28:30.0871642Z   Downloading text_unidecode-1.3-py2.py3-none-any.whl (78 kB)
2021-07-08T23:28:30.3709794Z Collecting thinc==8.0.6
2021-07-08T23:28:30.3774227Z   Downloading thinc-8.0.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (628 kB)
2021-07-08T23:28:30.4892477Z Collecting threadpoolctl==2.1.0
2021-07-08T23:28:30.4924820Z   Downloading threadpoolctl-2.1.0-py3-none-any.whl (12 kB)
2021-07-08T23:28:30.7528327Z Collecting tokenizers==0.10.3
2021-07-08T23:28:30.7611375Z   Downloading tokenizers-0.10.3-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (3.3 MB)
2021-07-08T23:28:30.8298806Z Collecting toml==0.10.2
2021-07-08T23:28:30.8330151Z   Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB)
2021-07-08T23:28:30.9095408Z Collecting torch==1.9.0
2021-07-08T23:28:30.9130880Z   Downloading torch-1.9.0-cp38-cp38-manylinux1_x86_64.whl (831.4 MB)
2021-07-08T23:28:47.6791992Z Collecting tox==3.23.1
2021-07-08T23:28:47.6824684Z   Downloading tox-3.23.1-py2.py3-none-any.whl (85 kB)
2021-07-08T23:28:47.9989460Z Collecting tqdm==4.61.1
2021-07-08T23:28:48.0020012Z   Downloading tqdm-4.61.1-py2.py3-none-any.whl (75 kB)
2021-07-08T23:28:48.2796772Z Collecting transformers==4.8.1
2021-07-08T23:28:48.2856709Z   Downloading transformers-4.8.1-py3-none-any.whl (2.5 MB)
2021-07-08T23:28:48.5739767Z Collecting typer==0.3.2
2021-07-08T23:28:48.5773762Z   Downloading typer-0.3.2-py3-none-any.whl (21 kB)
2021-07-08T23:28:48.7569974Z Collecting typing-extensions==3.10.0.0
2021-07-08T23:28:48.7599016Z   Downloading typing_extensions-3.10.0.0-py3-none-any.whl (26 kB)
2021-07-08T23:28:48.9140874Z Collecting urllib3==1.26.6
2021-07-08T23:28:48.9173633Z   Downloading urllib3-1.26.6-py2.py3-none-any.whl (138 kB)
2021-07-08T23:28:49.1651985Z Collecting virtualenv==20.4.7
2021-07-08T23:28:49.1690407Z   Downloading virtualenv-20.4.7-py2.py3-none-any.whl (7.2 MB)
2021-07-08T23:28:49.5061806Z Collecting voluptuous==0.12.1
2021-07-08T23:28:49.5093228Z   Downloading voluptuous-0.12.1-py3-none-any.whl (29 kB)
2021-07-08T23:28:49.6316351Z Collecting wasabi==0.8.2
2021-07-08T23:28:49.6348207Z   Downloading wasabi-0.8.2-py3-none-any.whl (23 kB)
2021-07-08T23:28:49.7558585Z Collecting wcwidth==0.2.5
2021-07-08T23:28:49.7589371Z   Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB)
2021-07-08T23:28:49.8815598Z Collecting wrapt==1.12.1
2021-07-08T23:28:49.8846004Z   Downloading wrapt-1.12.1.tar.gz (27 kB)
2021-07-08T23:28:50.2583671Z Collecting xmltodict==0.12.0
2021-07-08T23:28:50.2621507Z   Downloading xmltodict-0.12.0-py2.py3-none-any.whl (9.2 kB)
2021-07-08T23:28:50.5807674Z Collecting yarl==1.6.3
2021-07-08T23:28:50.5849334Z   Downloading yarl-1.6.3-cp38-cp38-manylinux2014_x86_64.whl (324 kB)
2021-07-08T23:28:50.7602627Z Collecting zc.lockfile==2.0
2021-07-08T23:28:50.7637336Z   Downloading zc.lockfile-2.0-py2.py3-none-any.whl (9.7 kB)
2021-07-08T23:28:51.5500840Z Requirement already satisfied: setuptools>=34.0.0 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc==2.4.3->-r requirements.txt (line 31)) (47.1.0)
2021-07-08T23:28:54.0636335Z WARNING: The candidate selected for download or install is a yanked version: 'ruamel-yaml-clib' candidate (version 0.2.4 at https://files.pythonhosted.org/packages/00/df/223b050de30220a64f699ec6f0b7e55f5acd73e917439b3f964a82f6e994/ruamel.yaml.clib-0.2.4-cp38-cp38-manylinux1_x86_64.whl#sha256=2b9a62080d18c7fa17443e37f0d941d1be0a66ddcf5be5253f91cc59a15a9c1e (from https://pypi.org/simple/ruamel-yaml-clib/))
2021-07-08T23:28:54.0640038Z Reason for being yanked: did not include python_requires
2021-07-08T23:28:54.0642068Z Using legacy 'setup.py install' for en-ner-bionlp13cg-md, since package 'wheel' is not installed.
2021-07-08T23:28:54.0644093Z Using legacy 'setup.py install' for aiobotocore, since package 'wheel' is not installed.
2021-07-08T23:28:54.0645918Z Using legacy 'setup.py install' for atpublic, since package 'wheel' is not installed.
2021-07-08T23:28:54.0647512Z Using legacy 'setup.py install' for configobj, since package 'wheel' is not installed.
2021-07-08T23:28:54.0650184Z Using legacy 'setup.py install' for dpath, since package 'wheel' is not installed.
2021-07-08T23:28:54.0652162Z Using legacy 'setup.py install' for flufl.lock, since package 'wheel' is not installed.
2021-07-08T23:28:54.0654762Z Using legacy 'setup.py install' for ftfy, since package 'wheel' is not installed.
2021-07-08T23:28:54.0656603Z Using legacy 'setup.py install' for future, since package 'wheel' is not installed.
2021-07-08T23:28:54.0660524Z Using legacy 'setup.py install' for mailchecker, since package 'wheel' is not installed.
2021-07-08T23:28:54.0662367Z Using legacy 'setup.py install' for nanotime, since package 'wheel' is not installed.
2021-07-08T23:28:54.0665376Z Using legacy 'setup.py install' for pygtrie, since package 'wheel' is not installed.
2021-07-08T23:28:54.0668172Z Using legacy 'setup.py install' for sklearn, since package 'wheel' is not installed.
2021-07-08T23:28:54.0670841Z Using legacy 'setup.py install' for wrapt, since package 'wheel' is not installed.
2021-07-08T23:28:54.9264768Z Installing collected packages: urllib3, six, numpy, murmurhash, multidict, idna, cymem, click, chardet, certifi, catalogue, yarl, wcwidth, wasabi, typing-extensions, typer, text-unidecode, srsly, smmap, smart-open, requests, python-dateutil, pyparsing, pydantic, pycparser, preshed, MarkupSafe, jmespath, blis, attrs, async-timeout, xmltodict, wrapt, tqdm, toml, threadpoolctl, thinc, spacy-legacy, scipy, ruamel.yaml.clib, regex, PyYAML, python-slugify, python-fsutil, Pygments, pybind11, py, psutil, ply, pluggy, phonenumbers, pathy, packaging, mailchecker, joblib, Jinja2, iniconfig, gitdb, future, ftfy, filelock, distlib, decorator, commonmark, colorama, cffi, botocore, atpublic, appdirs, aioitertools, aiohttp, zc.lockfile, voluptuous, virtualenv, tokenizers, tabulate, spacy, shtab, shortuuid, scikit-learn, sacremoses, s3transfer, ruamel.yaml, rich, pytz, python-benedict, pytest, pysbd, pygtrie, pygit2, pydot, pyasn1, pathspec, nmslib, networkx, nanotime, mypy-extensions, jsonpath-ng, huggingface-hub, grandalf, GitPython, funcy, fsspec, flufl.lock, flatten-dict, dulwich, dpath, distro, diskcache, dictdiffer, coverage, conllu, configobj, aiobotocore, transformers, tox, torch, sklearn, scispacy, s3fs, pytest-cov, pandas, en-ner-bionlp13cg-md, dvc, boto3, black
2021-07-08T23:28:58.3720170Z     Running setup.py install for wrapt: started
2021-07-08T23:28:59.2317451Z     Running setup.py install for wrapt: finished with status 'done'
2021-07-08T23:29:07.3549005Z     Running setup.py install for mailchecker: started
2021-07-08T23:29:07.6462005Z     Running setup.py install for mailchecker: finished with status 'done'
2021-07-08T23:29:08.0153176Z     Running setup.py install for future: started
2021-07-08T23:29:08.5530278Z     Running setup.py install for future: finished with status 'done'
2021-07-08T23:29:08.5644470Z     Running setup.py install for ftfy: started
2021-07-08T23:29:08.7940098Z     Running setup.py install for ftfy: finished with status 'done'
2021-07-08T23:29:09.5233861Z     Running setup.py install for atpublic: started
2021-07-08T23:29:09.7514517Z     Running setup.py install for atpublic: finished with status 'done'
2021-07-08T23:29:13.6326086Z     Running setup.py install for pygtrie: started
2021-07-08T23:29:13.8594231Z     Running setup.py install for pygtrie: finished with status 'done'
2021-07-08T23:29:15.2406548Z     Running setup.py install for nanotime: started
2021-07-08T23:29:15.4735972Z     Running setup.py install for nanotime: finished with status 'done'
2021-07-08T23:29:15.9915004Z     Running setup.py install for flufl.lock: started
2021-07-08T23:29:16.0003046Z     Running setup.py install for flufl.lock: finished with status 'done'
2021-07-08T23:29:16.3102240Z     Running setup.py install for dpath: started
2021-07-08T23:29:16.5506750Z     Running setup.py install for dpath: finished with status 'done'
2021-07-08T23:29:16.7016785Z     Running setup.py install for configobj: started
2021-07-08T23:29:16.9546175Z     Running setup.py install for configobj: finished with status 'done'
2021-07-08T23:29:16.9574092Z     Running setup.py install for aiobotocore: started
2021-07-08T23:29:17.2280120Z     Running setup.py install for aiobotocore: finished with status 'done'
2021-07-08T23:29:32.8033592Z     Running setup.py install for sklearn: started
2021-07-08T23:29:33.0653883Z     Running setup.py install for sklearn: finished with status 'done'
2021-07-08T23:29:37.0684800Z     Running setup.py install for en-ner-bionlp13cg-md: started
2021-07-08T23:29:37.6836595Z     Running setup.py install for en-ner-bionlp13cg-md: finished with status 'done'
2021-07-08T23:29:38.8418608Z WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
2021-07-08T23:29:38.8429387Z Successfully installed GitPython-3.1.18 Jinja2-3.0.1 MarkupSafe-2.0.1 PyYAML-5.4.1 Pygments-2.9.0 aiobotocore-1.3.0 aiohttp-3.7.4.post0 aioitertools-0.7.1 appdirs-1.4.4 async-timeout-3.0.1 atpublic-2.3 attrs-21.2.0 black-21.6b0 blis-0.7.4 boto3-1.17.49 botocore-1.20.49 catalogue-2.0.4 certifi-2021.5.30 cffi-1.14.5 chardet-4.0.0 click-7.1.2 colorama-0.4.4 commonmark-0.9.1 configobj-5.0.6 conllu-4.4 coverage-5.5 cymem-2.0.5 decorator-4.4.2 dictdiffer-0.8.1 diskcache-5.2.1 distlib-0.3.2 distro-1.5.0 dpath-2.0.1 dulwich-0.20.23 dvc-2.4.3 en-ner-bionlp13cg-md-0.4.0 filelock-3.0.12 flatten-dict-0.4.0 flufl.lock-3.2 fsspec-2021.6.1 ftfy-6.0.3 funcy-1.16 future-0.18.2 gitdb-4.0.7 grandalf-0.6 huggingface-hub-0.0.12 idna-2.10 iniconfig-1.1.1 jmespath-0.10.0 joblib-1.0.1 jsonpath-ng-1.5.2 mailchecker-4.0.9 multidict-5.1.0 murmurhash-1.0.5 mypy-extensions-0.4.3 nanotime-0.5.2 networkx-2.5.1 nmslib-2.1.1 numpy-1.21.0 packaging-20.9 pandas-1.2.5 pathspec-0.8.1 pathy-0.6.0 phonenumbers-8.12.26 pluggy-0.13.1 ply-3.11 preshed-3.0.5 psutil-5.8.0 py-1.10.0 pyasn1-0.4.8 pybind11-2.6.1 pycparser-2.20 pydantic-1.7.4 pydot-1.4.2 pygit2-1.6.1 pygtrie-2.4.2 pyparsing-2.4.7 pysbd-0.3.4 pytest-6.2.4 pytest-cov-2.12.1 python-benedict-0.24.0 python-dateutil-2.8.1 python-fsutil-0.5.0 python-slugify-5.0.2 pytz-2021.1 regex-2021.4.4 requests-2.25.1 rich-10.4.0 ruamel.yaml-0.17.10 ruamel.yaml.clib-0.2.4 s3fs-2021.6.1 s3transfer-0.3.7 sacremoses-0.0.45 scikit-learn-0.24.2 scipy-1.7.0 scispacy-0.4.0 shortuuid-1.0.1 shtab-1.3.6 six-1.16.0 sklearn-0.0 smart-open-5.1.0 smmap-4.0.0 spacy-3.0.6 spacy-legacy-3.0.6 srsly-2.4.1 tabulate-0.8.9 text-unidecode-1.3 thinc-8.0.6 threadpoolctl-2.1.0 tokenizers-0.10.3 toml-0.10.2 torch-1.9.0 tox-3.23.1 tqdm-4.61.1 transformers-4.8.1 typer-0.3.2 typing-extensions-3.10.0.0 urllib3-1.26.6 virtualenv-20.4.7 voluptuous-0.12.1 wasabi-0.8.2 wcwidth-0.2.5 wrapt-1.12.1 xmltodict-0.12.0 yarl-1.6.3 zc.lockfile-2.0
2021-07-08T23:29:39.6190994Z Processing /__w/reviews_labeler/reviews_labeler
2021-07-08T23:29:39.6196862Z   DEPRECATION: A future pip version will change local packages to be built in-place without first copying to a temporary directory. We recommend you use --use-feature=in-tree-build to test your packages with this new behavior before it becomes the default.
2021-07-08T23:29:39.6199897Z    pip 21.3 will remove support for this functionality. You can find discussion regarding this at https://github.com/pypa/pip/issues/7555.
2021-07-08T23:29:39.7553415Z   Installing build dependencies: started
2021-07-08T23:29:42.6395446Z   Installing build dependencies: finished with status 'done'
2021-07-08T23:29:42.6423425Z   Getting requirements to build wheel: started
2021-07-08T23:29:42.8398461Z   Getting requirements to build wheel: finished with status 'done'
2021-07-08T23:29:42.8423561Z     Preparing wheel metadata: started
2021-07-08T23:29:43.0482193Z     Preparing wheel metadata: finished with status 'done'
2021-07-08T23:29:43.0597587Z Requirement already satisfied: dvc[s3] in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from reviews-labeler==0.1.0) (2.4.3)
2021-07-08T23:29:43.0607663Z Requirement already satisfied: transformers in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from reviews-labeler==0.1.0) (4.8.1)
2021-07-08T23:29:43.0615184Z Requirement already satisfied: pandas in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from reviews-labeler==0.1.0) (1.2.5)
2021-07-08T23:29:43.0624077Z Requirement already satisfied: tqdm in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from reviews-labeler==0.1.0) (4.61.1)
2021-07-08T23:29:43.0631009Z Requirement already satisfied: spacy in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from reviews-labeler==0.1.0) (3.0.6)
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2021-07-08T23:29:43.0647155Z Requirement already satisfied: scispacy in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from reviews-labeler==0.1.0) (0.4.0)
2021-07-08T23:29:43.0654112Z Requirement already satisfied: sklearn in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from reviews-labeler==0.1.0) (0.0)
2021-07-08T23:29:43.1704622Z Requirement already satisfied: funcy>=1.14 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc[s3]->reviews-labeler==0.1.0) (1.16)
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2021-07-08T23:29:43.1761143Z Requirement already satisfied: toml>=0.10.1 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc[s3]->reviews-labeler==0.1.0) (0.10.2)
2021-07-08T23:29:43.1763973Z Requirement already satisfied: gitpython>3 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc[s3]->reviews-labeler==0.1.0) (3.1.18)
2021-07-08T23:29:43.1766661Z Requirement already satisfied: appdirs>=1.4.3 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc[s3]->reviews-labeler==0.1.0) (1.4.4)
2021-07-08T23:29:43.1769351Z Requirement already satisfied: pyparsing==2.4.7 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc[s3]->reviews-labeler==0.1.0) (2.4.7)
2021-07-08T23:29:43.1777627Z Requirement already satisfied: flufl.lock<4,>=3.2 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc[s3]->reviews-labeler==0.1.0) (3.2)
2021-07-08T23:29:43.1788070Z Requirement already satisfied: dictdiffer>=0.8.1 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc[s3]->reviews-labeler==0.1.0) (0.8.1)
2021-07-08T23:29:43.1797746Z Requirement already satisfied: shortuuid>=0.5.0 in /__w/_tool/Python/3.8.5/x64/lib/python3.8/site-packages (from dvc[s3]->reviews-labeler==0.1.0) (1.0.1)
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2021-07-08T23:29:44.4803190Z Building wheels for collected packages: reviews-labeler
2021-07-08T23:29:44.4812197Z   Building wheel for reviews-labeler (PEP 517): started
2021-07-08T23:29:44.7215330Z   Building wheel for reviews-labeler (PEP 517): finished with status 'done'
2021-07-08T23:29:44.7225605Z   Created wheel for reviews-labeler: filename=reviews_labeler-0.1.0-py3-none-any.whl size=11566 sha256=94fecb5727d887c3c7a29bfc4b57d981ad9df9d99b4f02fca606a67ad9005d66
2021-07-08T23:29:44.7227847Z   Stored in directory: /tmp/pip-ephem-wheel-cache-prlldhjk/wheels/c6/b8/bf/12a0e01eea8a075ff8e11ce5e2a89a0be370a96a583c130b24
2021-07-08T23:29:44.7249789Z Successfully built reviews-labeler
2021-07-08T23:29:44.8049468Z Installing collected packages: reviews-labeler
2021-07-08T23:29:44.8538428Z WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
2021-07-08T23:29:44.8539906Z Successfully installed reviews-labeler-0.1.0
2021-07-08T23:29:46.5167135Z A       data/raw/ER4Matches2021-02-01aBib.tsv
2021-07-08T23:29:46.5168201Z 1 file added and 1 file fetched
2021-07-08T23:29:47.4341423Z 'data/raw/ER4Matches2021-02-01aBib.tsv.dvc' didn't change, skipping
2021-07-08T23:29:47.4451810Z Running stage 'preprocess':
2021-07-08T23:29:47.4454927Z > rvl preprocess data/raw/ER4Matches2021-02-01aBib.tsv data/processed/er4_data.jsonl
2021-07-08T23:29:58.1180800Z 
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2021-07-08T23:29:59.2895571Z 
2021-07-08T23:29:59.3089077Z Running stage 'train_tfidf_svm_ner':
2021-07-08T23:29:59.3092812Z > rvl train tfidf-svm-ner data/processed/train_er4_data.jsonl models/tfidf-svm-ner.pkl
2021-07-08T23:51:21.0851745Z Updating lock file 'dvc.lock'
2021-07-08T23:51:21.1020112Z 
2021-07-08T23:51:21.1145648Z Running stage 'evaluate_tfidf_svm_ner':
2021-07-08T23:51:21.1149648Z > rvl evaluate tfidf-svm-ner data/processed/test_er4_data.jsonl models/tfidf-svm-ner.pkl --results-path results/tfidf_svm_ner.json
<REDACTED>
2021-07-08T23:54:27.8426603Z Updating lock file 'dvc.lock'
2021-07-08T23:54:27.8591442Z 
2021-07-08T23:54:27.8773182Z Running stage 'train_bert_seq_classifier':
2021-07-08T23:54:27.8776098Z > rvl train bert-seq-classifier data/processed/train_er4_data.jsonl models/bert-seq-classifier.pkl
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2021-07-08T23:54:49.1521208Z Some weights of the model checkpoint at bert-base-uncased were not used when initializing BertForSequenceClassification: ['cls.predictions.bias', 'cls.predictions.decoder.weight', 'cls.predictions.transform.LayerNorm.bias', 'cls.predictions.transform.dense.bias', 'cls.seq_relationship.bias', 'cls.seq_relationship.weight', 'cls.predictions.transform.dense.weight', 'cls.predictions.transform.LayerNorm.weight']
2021-07-08T23:54:49.1525970Z - This IS expected if you are initializing BertForSequenceClassification from the checkpoint of a model trained on another task or with another architecture (e.g. initializing a BertForSequenceClassification model from a BertForPreTraining model).
2021-07-08T23:54:49.1530203Z - This IS NOT expected if you are initializing BertForSequenceClassification from the checkpoint of a model that you expect to be exactly identical (initializing a BertForSequenceClassification model from a BertForSequenceClassification model).
2021-07-08T23:54:49.1532763Z Some weights of BertForSequenceClassification were not initialized from the model checkpoint at bert-base-uncased and are newly initialized: ['classifier.bias', 'classifier.weight']
2021-07-08T23:54:49.1534419Z You should probably TRAIN this model on a down-stream task to be able to use it for predictions and inference.
2021-07-09T00:52:59.1981785Z 
2021-07-09T00:52:59.1982435Z  Epoch 1 / 5
2021-07-09T00:52:59.1982656Z 
2021-07-09T00:52:59.1982975Z  Epoch 2 / 5
2021-07-09T00:52:59.1983471Z 
2021-07-09T00:52:59.1983936Z  Epoch 3 / 5
2021-07-09T00:52:59.1984249Z 
2021-07-09T00:52:59.1984889Z  Epoch 4 / 5
2021-07-09T00:52:59.1985260Z 
2021-07-09T00:52:59.1985859Z  Epoch 5 / 5
2021-07-09T00:52:59.1986550Z Average train loss: 0.241387898303688
2021-07-09T00:52:59.1987146Z Average valid loss: 1.0788137774920468
2021-07-09T00:53:01.3082536Z Updating lock file 'dvc.lock'
2021-07-09T00:53:01.3247794Z 
2021-07-09T00:53:01.3372161Z Running stage 'evaluate_bert_seq_classifier':
2021-07-09T00:53:01.3375789Z > rvl evaluate bert-seq-classifier data/processed/test_er4_data.jsonl models/bert-seq-classifier.pkl --results-path results/bert_seq_classifier.json
2021-07-09T00:53:14.7562641Z Some weights of the model checkpoint at bert-base-uncased were not used when initializing BertForSequenceClassification: ['cls.predictions.bias', 'cls.predictions.decoder.weight', 'cls.seq_relationship.weight', 'cls.predictions.transform.LayerNorm.bias', 'cls.predictions.transform.dense.bias', 'cls.predictions.transform.dense.weight', 'cls.seq_relationship.bias', 'cls.predictions.transform.LayerNorm.weight']
2021-07-09T00:53:14.7567864Z - This IS expected if you are initializing BertForSequenceClassification from the checkpoint of a model trained on another task or with another architecture (e.g. initializing a BertForSequenceClassification model from a BertForPreTraining model).
2021-07-09T00:53:14.7570924Z - This IS NOT expected if you are initializing BertForSequenceClassification from the checkpoint of a model that you expect to be exactly identical (initializing a BertForSequenceClassification model from a BertForSequenceClassification model).
2021-07-09T00:53:14.7573613Z Some weights of BertForSequenceClassification were not initialized from the model checkpoint at bert-base-uncased and are newly initialized: ['classifier.weight', 'classifier.bias']
2021-07-09T00:53:14.7575349Z You should probably TRAIN this model on a down-stream task to be able to use it for predictions and inference.
<REDACTED>
2021-07-09T00:54:08.5562873Z 
2021-07-09T00:54:09.4592029Z Updating lock file 'dvc.lock'
2021-07-09T00:54:09.4758149Z 
2021-07-09T00:54:09.4758780Z To track the changes with git, run:
2021-07-09T00:54:09.4759089Z 
2021-07-09T00:54:09.4759408Z 	git add dvc.lock
2021-07-09T00:54:09.4798357Z Use `dvc push` to send your updates to remote storage.
2021-07-09T00:54:10.6610845Z From https://github.com/MantisAI/reviews_labeler
2021-07-09T00:54:10.6612237Z  * [new branch]      cml-report             -> origin/cml-report
2021-07-09T00:54:10.6617974Z  * [new branch]      cml/test               -> origin/cml/test
2021-07-09T00:54:10.6620248Z  * [new branch]      feature/allow-CML-on-workflow-despatch -> origin/feature/allow-CML-on-workflow-despatch
2021-07-09T00:54:10.6622382Z  * [new branch]      fix/cml-and-dvc-issues -> origin/fix/cml-and-dvc-issues
2021-07-09T00:54:10.6624169Z  * [new branch]      fix/permissions-issue  -> origin/fix/permissions-issue
2021-07-09T00:54:10.6625594Z  * [new branch]      main                   -> origin/main
2021-07-09T00:54:10.6626796Z  * [new branch]      ner_approach           -> origin/ner_approach
2021-07-09T00:54:10.6627721Z  * [new branch]      run-cml                -> origin/run-cml
2021-07-09T00:54:10.6628580Z  * [new branch]      test/cml               -> origin/test/cml
2021-07-09T00:54:10.6629467Z  * [new branch]      test/cml-runner        -> origin/test/cml-runner
2021-07-09T00:54:16.4160532Z https://github.com/MantisAI/reviews_labeler/commit/119bead7657a76bba5f508c22c85a0da26f515a3#commitcomment-53247022
2021-07-09T00:54:20.9805701Z 7 files pushed
2021-07-09T00:54:22.0524026Z ##[group]Run EndBug/add-and-commit@v7
2021-07-09T00:54:22.0524470Z with:
2021-07-09T00:54:22.0524816Z   add: dvc.lock --force
2021-07-09T00:54:22.0525234Z   pull_strategy: NO-PULL
2021-07-09T00:54:22.0525661Z   message: chg: dvc repro
2021-07-09T00:54:22.0526033Z   cwd: .
2021-07-09T00:54:22.0526390Z   default_author: github_actor
2021-07-09T00:54:22.0526779Z   push: true
2021-07-09T00:54:22.0527528Z   github_token: ***
2021-07-09T00:54:22.0527870Z env:
2021-07-09T00:54:22.0528299Z   pythonLocation: /__w/_tool/Python/3.8.5/x64
2021-07-09T00:54:22.0528939Z   LD_LIBRARY_PATH: /__w/_tool/Python/3.8.5/x64/lib:/usr/local/nvidia/lib:/usr/local/nvidia/lib64
2021-07-09T00:54:22.0529491Z ##[endgroup]
2021-07-09T00:54:22.0535757Z ##[command]/usr/bin/docker exec  ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a sh -c "cat /etc/*release | grep ^ID"
2021-07-09T00:54:22.3963841Z 
2021-07-09T00:54:22.3968765Z 
2021-07-09T00:54:22.3972141Z 
2021-07-09T00:54:22.3979421Z Running in /__w/reviews_labeler/reviews_labeler
2021-07-09T00:54:22.4001261Z Add input parsed as single string, running 1 git add command.
2021-07-09T00:54:22.4004411Z > Using 'ivyleavedtoadflax <[email protected]>' as author.
2021-07-09T00:54:22.4020141Z > Using "chg: dvc repro" as commit message.
2021-07-09T00:54:22.4027661Z ##[group]Internal logs
2021-07-09T00:54:22.4028601Z > Staging files...
2021-07-09T00:54:22.4029386Z > Adding files...
2021-07-09T00:54:22.4181559Z > No files to remove.
2021-07-09T00:54:22.4182149Z > Checking for uncommitted changes in the git working tree...
2021-07-09T00:54:22.4228628Z > Found 1 changed files.
2021-07-09T00:54:23.0047951Z { raw: '', remote: null, branches: [], tags: [] }
2021-07-09T00:54:23.0048882Z > Switching/creating branch...
2021-07-09T00:54:23.0094713Z M	dvc.lock
2021-07-09T00:54:23.0095545Z M	results/tfidf_svm.txt
2021-07-09T00:54:23.0097904Z Your branch is up to date with 'origin/feature/name-cml-instances'.
2021-07-09T00:54:23.0098917Z 
2021-07-09T00:54:23.0099708Z > Not pulling from repo.
2021-07-09T00:54:23.0100906Z > Re-staging files...
2021-07-09T00:54:23.0128549Z > Creating commit...
2021-07-09T00:54:23.0196399Z 
2021-07-09T00:54:23.0199034Z {
2021-07-09T00:54:23.0199475Z   author: null,
2021-07-09T00:54:23.0200505Z   branch: 'feature/name-cml-instances',
2021-07-09T00:54:23.0201367Z   commit: '5494d3f',
2021-07-09T00:54:23.0202074Z   summary: { changes: 1, insertions: 12, deletions: 12 }
2021-07-09T00:54:23.0202646Z }
2021-07-09T00:54:23.0203257Z > No tag info provided.
2021-07-09T00:54:23.0203885Z > Pushing commit to repo...
2021-07-09T00:54:25.3793360Z 
2021-07-09T00:54:25.3797078Z {
2021-07-09T00:54:25.3797679Z   pushed: [],
2021-07-09T00:54:25.3798282Z   update: {
2021-07-09T00:54:25.3798848Z     head: {
2021-07-09T00:54:25.3800125Z       local: 'refs/heads/feature/name-cml-instances',
2021-07-09T00:54:25.3801558Z       remote: 'refs/heads/feature/name-cml-instances'
2021-07-09T00:54:25.3802425Z     },
2021-07-09T00:54:25.3803375Z     hash: { from: '119bead', to: '5494d3f' }
2021-07-09T00:54:25.3803972Z   },
2021-07-09T00:54:25.3804453Z   branch: {
2021-07-09T00:54:25.3805500Z     local: 'feature/name-cml-instances',
2021-07-09T00:54:25.3806689Z     remote: 'feature/name-cml-instances',
2021-07-09T00:54:25.3807757Z     remoteName: 'origin'
2021-07-09T00:54:25.3808344Z   },
2021-07-09T00:54:25.3809405Z   repo: 'https://github.com/MantisAI/reviews_labeler',
2021-07-09T00:54:25.3810890Z   ref: { local: 'refs/remotes/origin/feature/name-cml-instances' },
2021-07-09T00:54:25.3812107Z   remoteMessages: RemoteMessageSummary { all: [] }
2021-07-09T00:54:25.3812941Z }
2021-07-09T00:54:25.3813444Z > No tags to push.
2021-07-09T00:54:25.3814177Z ##[endgroup]
2021-07-09T00:54:25.3814759Z > Task completed.
2021-07-09T00:54:25.3815585Z ##[group]Outputs
2021-07-09T00:54:25.3816229Z committed: true
2021-07-09T00:54:25.3816823Z pushed: true
2021-07-09T00:54:25.3817376Z tagged: false
2021-07-09T00:54:25.3817978Z ##[endgroup]
2021-07-09T00:54:25.3963848Z Post job cleanup.
2021-07-09T00:54:25.3970253Z ##[command]/usr/bin/docker exec  ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a sh -c "cat /etc/*release | grep ^ID"
2021-07-09T00:54:25.7046897Z [command]/usr/bin/git version
2021-07-09T00:54:25.7092494Z git version 2.32.0
2021-07-09T00:54:25.7124697Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-07-09T00:54:25.7156248Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-07-09T00:54:25.7384853Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-07-09T00:54:25.7407591Z http.https://github.com/.extraheader
2021-07-09T00:54:25.7415405Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2021-07-09T00:54:25.7443309Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-07-09T00:54:25.7739287Z Stop and remove container: dc14e8de5b4d4832ae0a870f6b3c2dc2_dvcorgcml0dvc2base1gpu_e393ba
2021-07-09T00:54:25.7743318Z ##[command]/usr/bin/docker rm --force ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a
2021-07-09T00:54:26.0111941Z ff5ca5be2bf828c038715505023c6ab002f0ad7b9bd17e7b89b03f799c02a79a
2021-07-09T00:54:26.0145193Z Remove container network: github_network_c993a3e938394dadab7be3d4a1673ad2
2021-07-09T00:54:26.0148236Z ##[command]/usr/bin/docker network rm github_network_c993a3e938394dadab7be3d4a1673ad2
2021-07-09T00:54:26.1566402Z github_network_c993a3e938394dadab7be3d4a1673ad2
2021-07-09T00:54:26.1606622Z Cleaning up orphan processes

@ivyleavedtoadflax
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ivyleavedtoadflax commented Jul 9, 2021

Sooo...something interesting happened after I terminated that instance ☝️ I terminated the instance with aws ec2 terminate-instances and immediately the workflow was re-run and then failed.

image

The reason for failure as you will see in the log is that AWS has only permitted us 4 vCPUS of the g type, so it reached the limit with the new instance (while the old one was terminating) and so failed. Is there any chance that the issue I am experiencing could be related to the resume functionality for spot instances mentioned in #650.

log:

2021-07-09T03:03:19.5425047Z Found online and idle hosted runner(s) in the current repository's organization account that matches the required labels: 'ubuntu-latest'
2021-07-09T03:03:19.5425118Z Waiting for a hosted runner in 'organization' to pick this job...
2021-07-09T03:03:27.2455943Z Current runner version: '2.278.0'
2021-07-09T03:03:27.2480789Z ##[group]Operating System
2021-07-09T03:03:27.2481715Z Ubuntu
2021-07-09T03:03:27.2482393Z 20.04.2
2021-07-09T03:03:27.2482874Z LTS
2021-07-09T03:03:27.2483419Z ##[endgroup]
2021-07-09T03:03:27.2484013Z ##[group]Virtual Environment
2021-07-09T03:03:27.2484634Z Environment: ubuntu-20.04
2021-07-09T03:03:27.2485257Z Version: 20210628.1
2021-07-09T03:03:27.2486287Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210628.1/images/linux/Ubuntu2004-README.md
2021-07-09T03:03:27.2487648Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210628.1
2021-07-09T03:03:27.2488544Z ##[endgroup]
2021-07-09T03:03:27.2490451Z ##[group]GITHUB_TOKEN Permissions
2021-07-09T03:03:27.2491711Z Actions: write
2021-07-09T03:03:27.2492212Z Checks: write
2021-07-09T03:03:27.2492746Z Contents: write
2021-07-09T03:03:27.2493342Z Deployments: write
2021-07-09T03:03:27.2494014Z Discussions: write
2021-07-09T03:03:27.2494579Z Issues: write
2021-07-09T03:03:27.2495108Z Metadata: read
2021-07-09T03:03:27.2495677Z Packages: write
2021-07-09T03:03:27.2496224Z PullRequests: write
2021-07-09T03:03:27.2496914Z RepositoryProjects: write
2021-07-09T03:03:27.2497583Z SecurityEvents: write
2021-07-09T03:03:27.2498184Z Statuses: write
2021-07-09T03:03:27.2498783Z ##[endgroup]
2021-07-09T03:03:27.2501657Z Prepare workflow directory
2021-07-09T03:03:27.3080820Z Prepare all required actions
2021-07-09T03:03:27.3091438Z Getting action download info
2021-07-09T03:03:27.7171278Z Download action repository 'actions/checkout@v2'
2021-07-09T03:03:29.4227076Z Download action repository 'iterative/setup-cml@v1'
2021-07-09T03:03:30.0286285Z ##[group]Run actions/checkout@v2
2021-07-09T03:03:30.0286889Z with:
2021-07-09T03:03:30.0287340Z   repository: MantisAI/reviews_labeler
2021-07-09T03:03:30.0288286Z   token: ***
2021-07-09T03:03:30.0288670Z   ssh-strict: true
2021-07-09T03:03:30.0289162Z   persist-credentials: true
2021-07-09T03:03:30.0289639Z   clean: true
2021-07-09T03:03:30.0290024Z   fetch-depth: 1
2021-07-09T03:03:30.0290409Z   lfs: false
2021-07-09T03:03:30.0290791Z   submodules: false
2021-07-09T03:03:30.0291174Z ##[endgroup]
2021-07-09T03:03:30.2366080Z Syncing repository: MantisAI/reviews_labeler
2021-07-09T03:03:30.2366912Z ##[group]Getting Git version info
2021-07-09T03:03:30.2367984Z Working directory is '/home/runner/work/reviews_labeler/reviews_labeler'
2021-07-09T03:03:30.2475421Z [command]/usr/bin/git version
2021-07-09T03:03:30.2576374Z git version 2.32.0
2021-07-09T03:03:30.2595290Z ##[endgroup]
2021-07-09T03:03:30.2601912Z Deleting the contents of '/home/runner/work/reviews_labeler/reviews_labeler'
2021-07-09T03:03:30.2605291Z ##[group]Initializing the repository
2021-07-09T03:03:30.2609063Z [command]/usr/bin/git init /home/runner/work/reviews_labeler/reviews_labeler
2021-07-09T03:03:30.2697287Z hint: Using 'master' as the name for the initial branch. This default branch name
2021-07-09T03:03:30.8404044Z hint: is subject to change. To configure the initial branch name to use in all
2021-07-09T03:03:30.8462060Z hint: of your new repositories, which will suppress this warning, call:
2021-07-09T03:03:30.8462840Z hint: 
2021-07-09T03:03:30.8464115Z hint: 	git config --global init.defaultBranch <name>
2021-07-09T03:03:30.8464773Z hint: 
2021-07-09T03:03:30.8465595Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2021-07-09T03:03:30.8466680Z hint: 'development'. The just-created branch can be renamed via this command:
2021-07-09T03:03:30.8467386Z hint: 
2021-07-09T03:03:30.8468093Z hint: 	git branch -m <name>
2021-07-09T03:03:30.8468936Z Initialized empty Git repository in /home/runner/work/reviews_labeler/reviews_labeler/.git/
2021-07-09T03:03:30.8470021Z [command]/usr/bin/git remote add origin https://github.com/MantisAI/reviews_labeler
2021-07-09T03:03:30.8470891Z ##[endgroup]
2021-07-09T03:03:30.8471554Z ##[group]Disabling automatic garbage collection
2021-07-09T03:03:30.8472455Z [command]/usr/bin/git config --local gc.auto 0
2021-07-09T03:03:30.8473311Z ##[endgroup]
2021-07-09T03:03:30.8475220Z ##[group]Setting up auth
2021-07-09T03:03:30.8476217Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-07-09T03:03:30.8477985Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-07-09T03:03:30.8479726Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-07-09T03:03:30.8481656Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-07-09T03:03:30.8484039Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2021-07-09T03:03:30.8484983Z ##[endgroup]
2021-07-09T03:03:30.8485504Z ##[group]Fetching the repository
2021-07-09T03:03:30.8492977Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +119bead7657a76bba5f508c22c85a0da26f515a3:refs/remotes/origin/feature/name-cml-instances
2021-07-09T03:03:30.8494534Z remote: Enumerating objects: 65, done.        
2021-07-09T03:03:30.8495204Z remote: Counting objects:   1% (1/65)        
2021-07-09T03:03:30.8495836Z remote: Counting objects:   3% (2/65)        
2021-07-09T03:03:30.8496444Z remote: Counting objects:   4% (3/65)        
2021-07-09T03:03:30.8497065Z remote: Counting objects:   6% (4/65)        
2021-07-09T03:03:30.8497884Z remote: Counting objects:   7% (5/65)        
2021-07-09T03:03:30.8498605Z remote: Counting objects:   9% (6/65)        
2021-07-09T03:03:30.8499127Z remote: Counting objects:  10% (7/65)        
2021-07-09T03:03:30.8499632Z remote: Counting objects:  12% (8/65)        
2021-07-09T03:03:30.8500466Z remote: Counting objects:  13% (9/65)        
2021-07-09T03:03:30.8501000Z remote: Counting objects:  15% (10/65)        
2021-07-09T03:03:30.8501521Z remote: Counting objects:  16% (11/65)        
2021-07-09T03:03:30.8502034Z remote: Counting objects:  18% (12/65)        
2021-07-09T03:03:30.8502536Z remote: Counting objects:  20% (13/65)        
2021-07-09T03:03:30.8503047Z remote: Counting objects:  21% (14/65)        
2021-07-09T03:03:30.8503562Z remote: Counting objects:  23% (15/65)        
2021-07-09T03:03:30.8504233Z remote: Counting objects:  24% (16/65)        
2021-07-09T03:03:30.8504844Z remote: Counting objects:  26% (17/65)        
2021-07-09T03:03:30.8505459Z remote: Counting objects:  27% (18/65)        
2021-07-09T03:03:30.8506081Z remote: Counting objects:  29% (19/65)        
2021-07-09T03:03:30.8506696Z remote: Counting objects:  30% (20/65)        
2021-07-09T03:03:30.8507304Z remote: Counting objects:  32% (21/65)        
2021-07-09T03:03:30.8507907Z remote: Counting objects:  33% (22/65)        
2021-07-09T03:03:30.8508517Z remote: Counting objects:  35% (23/65)        
2021-07-09T03:03:30.8509142Z remote: Counting objects:  36% (24/65)        
2021-07-09T03:03:30.8509765Z remote: Counting objects:  38% (25/65)        
2021-07-09T03:03:30.8510378Z remote: Counting objects:  40% (26/65)        
2021-07-09T03:03:30.8511023Z remote: Counting objects:  41% (27/65)        
2021-07-09T03:03:30.8511624Z remote: Counting objects:  43% (28/65)        
2021-07-09T03:03:30.8512239Z remote: Counting objects:  44% (29/65)        
2021-07-09T03:03:30.8512858Z remote: Counting objects:  46% (30/65)        
2021-07-09T03:03:30.8513477Z remote: Counting objects:  47% (31/65)        
2021-07-09T03:03:30.8514102Z remote: Counting objects:  49% (32/65)        
2021-07-09T03:03:30.8514696Z remote: Counting objects:  50% (33/65)        
2021-07-09T03:03:30.8515314Z remote: Counting objects:  52% (34/65)        
2021-07-09T03:03:30.8515928Z remote: Counting objects:  53% (35/65)        
2021-07-09T03:03:30.8516546Z remote: Counting objects:  55% (36/65)        
2021-07-09T03:03:30.8517322Z remote: Counting objects:  56% (37/65)        
2021-07-09T03:03:30.8517925Z remote: Counting objects:  58% (38/65)        
2021-07-09T03:03:30.8518536Z remote: Counting objects:  60% (39/65)        
2021-07-09T03:03:30.8519148Z remote: Counting objects:  61% (40/65)        
2021-07-09T03:03:30.8546750Z remote: Counting objects:  63% (41/65)        
2021-07-09T03:03:30.8547374Z remote: Counting objects:  64% (42/65)        
2021-07-09T03:03:30.8547907Z remote: Counting objects:  66% (43/65)        
2021-07-09T03:03:30.8548544Z remote: Counting objects:  67% (44/65)        
2021-07-09T03:03:30.8549222Z remote: Counting objects:  69% (45/65)        
2021-07-09T03:03:30.8549849Z remote: Counting objects:  70% (46/65)        
2021-07-09T03:03:30.8550474Z remote: Counting objects:  72% (47/65)        
2021-07-09T03:03:30.8551092Z remote: Counting objects:  73% (48/65)        
2021-07-09T03:03:30.8551708Z remote: Counting objects:  75% (49/65)        
2021-07-09T03:03:30.8552323Z remote: Counting objects:  76% (50/65)        
2021-07-09T03:03:30.8552928Z remote: Counting objects:  78% (51/65)        
2021-07-09T03:03:30.8553544Z remote: Counting objects:  80% (52/65)        
2021-07-09T03:03:30.8554155Z remote: Counting objects:  81% (53/65)        
2021-07-09T03:03:30.8554766Z remote: Counting objects:  83% (54/65)        
2021-07-09T03:03:30.8555378Z remote: Counting objects:  84% (55/65)        
2021-07-09T03:03:30.8555989Z remote: Counting objects:  86% (56/65)        
2021-07-09T03:03:30.8556590Z remote: Counting objects:  87% (57/65)        
2021-07-09T03:03:30.8557208Z remote: Counting objects:  89% (58/65)        
2021-07-09T03:03:30.8557960Z remote: Counting objects:  90% (59/65)        
2021-07-09T03:03:30.8558592Z remote: Counting objects:  92% (60/65)        
2021-07-09T03:03:30.8559260Z remote: Counting objects:  93% (61/65)        
2021-07-09T03:03:30.8559864Z remote: Counting objects:  95% (62/65)        
2021-07-09T03:03:30.8560478Z remote: Counting objects:  96% (63/65)        
2021-07-09T03:03:30.8561101Z remote: Counting objects:  98% (64/65)        
2021-07-09T03:03:30.8561712Z remote: Counting objects: 100% (65/65)        
2021-07-09T03:03:30.8562586Z remote: Counting objects: 100% (65/65), done.        
2021-07-09T03:03:30.8563269Z remote: Compressing objects:   1% (1/54)        
2021-07-09T03:03:30.8563915Z remote: Compressing objects:   3% (2/54)        
2021-07-09T03:03:30.8564580Z remote: Compressing objects:   5% (3/54)        
2021-07-09T03:03:30.8565244Z remote: Compressing objects:   7% (4/54)        
2021-07-09T03:03:30.8565899Z remote: Compressing objects:   9% (5/54)        
2021-07-09T03:03:30.8566565Z remote: Compressing objects:  11% (6/54)        
2021-07-09T03:03:30.8567362Z remote: Compressing objects:  12% (7/54)        
2021-07-09T03:03:30.8568019Z remote: Compressing objects:  14% (8/54)        
2021-07-09T03:03:30.8568664Z remote: Compressing objects:  16% (9/54)        
2021-07-09T03:03:30.8569328Z remote: Compressing objects:  18% (10/54)        
2021-07-09T03:03:30.8570001Z remote: Compressing objects:  20% (11/54)        
2021-07-09T03:03:30.8570662Z remote: Compressing objects:  22% (12/54)        
2021-07-09T03:03:30.8571321Z remote: Compressing objects:  24% (13/54)        
2021-07-09T03:03:30.8571959Z remote: Compressing objects:  25% (14/54)        
2021-07-09T03:03:30.8585152Z remote: Compressing objects:  27% (15/54)        
2021-07-09T03:03:30.8585800Z remote: Compressing objects:  29% (16/54)        
2021-07-09T03:03:30.8586369Z remote: Compressing objects:  31% (17/54)        
2021-07-09T03:03:30.8586931Z remote: Compressing objects:  33% (18/54)        
2021-07-09T03:03:30.8587507Z remote: Compressing objects:  35% (19/54)        
2021-07-09T03:03:30.8588199Z remote: Compressing objects:  37% (20/54)        
2021-07-09T03:03:30.8588764Z remote: Compressing objects:  38% (21/54)        
2021-07-09T03:03:30.8589382Z remote: Compressing objects:  40% (22/54)        
2021-07-09T03:03:30.8589939Z remote: Compressing objects:  42% (23/54)        
2021-07-09T03:03:30.8590638Z remote: Compressing objects:  44% (24/54)        
2021-07-09T03:03:30.8591181Z remote: Compressing objects:  46% (25/54)        
2021-07-09T03:03:30.8591860Z remote: Compressing objects:  48% (26/54)        
2021-07-09T03:03:30.8592516Z remote: Compressing objects:  50% (27/54)        
2021-07-09T03:03:30.8593168Z remote: Compressing objects:  51% (28/54)        
2021-07-09T03:03:30.8593824Z remote: Compressing objects:  53% (29/54)        
2021-07-09T03:03:30.8594461Z remote: Compressing objects:  55% (30/54)        
2021-07-09T03:03:30.8595113Z remote: Compressing objects:  57% (31/54)        
2021-07-09T03:03:30.8595776Z remote: Compressing objects:  59% (32/54)        
2021-07-09T03:03:30.8596431Z remote: Compressing objects:  61% (33/54)        
2021-07-09T03:03:30.8597082Z remote: Compressing objects:  62% (34/54)        
2021-07-09T03:03:30.8597720Z remote: Compressing objects:  64% (35/54)        
2021-07-09T03:03:30.8598372Z remote: Compressing objects:  66% (36/54)        
2021-07-09T03:03:30.8599036Z remote: Compressing objects:  68% (37/54)        
2021-07-09T03:03:30.8599689Z remote: Compressing objects:  70% (38/54)        
2021-07-09T03:03:30.8600342Z remote: Compressing objects:  72% (39/54)        
2021-07-09T03:03:30.8600994Z remote: Compressing objects:  74% (40/54)        
2021-07-09T03:03:30.8601635Z remote: Compressing objects:  75% (41/54)        
2021-07-09T03:03:30.8602472Z remote: Compressing objects:  77% (42/54)        
2021-07-09T03:03:30.8603145Z remote: Compressing objects:  79% (43/54)        
2021-07-09T03:03:30.8603798Z remote: Compressing objects:  81% (44/54)        
2021-07-09T03:03:30.8604550Z remote: Compressing objects:  83% (45/54)        
2021-07-09T03:03:30.8605202Z remote: Compressing objects:  85% (46/54)        
2021-07-09T03:03:30.8605869Z remote: Compressing objects:  87% (47/54)        
2021-07-09T03:03:30.8606523Z remote: Compressing objects:  88% (48/54)        
2021-07-09T03:03:30.8607176Z remote: Compressing objects:  90% (49/54)        
2021-07-09T03:03:30.8607839Z remote: Compressing objects:  92% (50/54)        
2021-07-09T03:03:30.8608481Z remote: Compressing objects:  94% (51/54)        
2021-07-09T03:03:30.8609131Z remote: Compressing objects:  96% (52/54)        
2021-07-09T03:03:30.8609789Z remote: Compressing objects:  98% (53/54)        
2021-07-09T03:03:30.8610445Z remote: Compressing objects: 100% (54/54)        
2021-07-09T03:03:30.8611155Z remote: Compressing objects: 100% (54/54), done.        
2021-07-09T03:03:30.8612281Z remote: Total 65 (delta 9), reused 33 (delta 4), pack-reused 0        
2021-07-09T03:03:30.8613117Z From https://github.com/MantisAI/reviews_labeler
2021-07-09T03:03:30.8614418Z  * [new ref]         119bead7657a76bba5f508c22c85a0da26f515a3 -> origin/feature/name-cml-instances
2021-07-09T03:03:30.8615380Z ##[endgroup]
2021-07-09T03:03:30.8615994Z ##[group]Determining the checkout info
2021-07-09T03:03:30.8616587Z ##[endgroup]
2021-07-09T03:03:30.8617140Z ##[group]Checking out the ref
2021-07-09T03:03:30.8618392Z [command]/usr/bin/git checkout --progress --force -B feature/name-cml-instances refs/remotes/origin/feature/name-cml-instances
2021-07-09T03:03:30.8619694Z Switched to a new branch 'feature/name-cml-instances'
2021-07-09T03:03:30.8620981Z Branch 'feature/name-cml-instances' set up to track remote branch 'feature/name-cml-instances' from 'origin'.
2021-07-09T03:03:30.8621887Z ##[endgroup]
2021-07-09T03:03:30.8622608Z [command]/usr/bin/git log -1 --format='%H'
2021-07-09T03:03:30.8623519Z '119bead7657a76bba5f508c22c85a0da26f515a3'
2021-07-09T03:03:30.8684697Z ##[group]Run iterative/setup-cml@v1
2021-07-09T03:03:30.8685167Z with:
2021-07-09T03:03:30.8685542Z   version: latest
2021-07-09T03:03:30.8685923Z ##[endgroup]
2021-07-09T03:03:31.4310616Z Uninstalling previous CML
2021-07-09T03:03:31.8526856Z Installing CML version latest
2021-07-09T03:04:17.1357053Z ##[group]Run cml-runner \
2021-07-09T03:04:17.1357661Z �[36;1mcml-runner \�[0m
2021-07-09T03:04:17.1358170Z �[36;1m--name cml-reviews-labeler \�[0m
2021-07-09T03:04:17.1358801Z �[36;1m--cloud aws \�[0m
2021-07-09T03:04:17.1359267Z �[36;1m--cloud-region eu-west \�[0m
2021-07-09T03:04:17.1359876Z �[36;1m--cloud-type=g4dn.xlarge \�[0m
2021-07-09T03:04:17.1360361Z �[36;1m--cloud-spot true \�[0m
2021-07-09T03:04:17.1361046Z �[36;1m--labels=cml-runner,reviews-labeler,gpu \�[0m
2021-07-09T03:04:17.1361736Z �[36;1m--idle-timeout 300 \�[0m
2021-07-09T03:04:17.1362277Z �[36;1m--reuse�[0m
2021-07-09T03:04:17.1405984Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0}
2021-07-09T03:04:17.1406502Z env:
2021-07-09T03:04:17.1407851Z   REPO_TOKEN: ***
2021-07-09T03:04:17.1408385Z   AWS_ACCESS_KEY_ID: ***
2021-07-09T03:04:17.1409081Z   AWS_SECRET_ACCESS_KEY: ***
2021-07-09T03:04:17.1409497Z ##[endgroup]
2021-07-09T03:04:22.4615807Z Preparing workdir /home/runner/.cml/cml-stll5mr023...
2021-07-09T03:04:22.4631180Z Deploying cloud runner plan...
2021-07-09T03:04:22.4632972Z Terraform apply...
2021-07-09T03:04:31.0151978Z Error: terraform -chdir='/home/runner/.cml/cml-stll5mr023' apply -auto-approve
2021-07-09T03:04:31.0153000Z {"level":"error","status":"terminated"}
2021-07-09T03:04:31.0154846Z 	
2021-07-09T03:04:31.0158975Z Terraform used the selected providers to generate the following execution
2021-07-09T03:04:31.0160003Z plan. Resource actions are indicated with the following symbols:
2021-07-09T03:04:31.0160935Z   �[32m+�[0m create
2021-07-09T03:04:31.0161491Z �[0m
2021-07-09T03:04:31.0162065Z Terraform will perform the following actions:
2021-07-09T03:04:31.0162816Z 
2021-07-09T03:04:31.0163567Z �[1m  # iterative_cml_runner.runner�[0m will be created�[0m�[0m
2021-07-09T03:04:31.0164439Z �[0m  �[32m+�[0m�[0m resource "iterative_cml_runner" "runner" {
2021-07-09T03:04:31.0165205Z       �[32m+�[0m �[0m�[1m�[0mcloud�[0m�[0m                = "aws"
2021-07-09T03:04:31.0165910Z       �[32m+�[0m �[0m�[1m�[0mdriver�[0m�[0m               = "github"
2021-07-09T03:04:31.0166682Z       �[32m+�[0m �[0m�[1m�[0mid�[0m�[0m                   = (known after apply)
2021-07-09T03:04:31.0167399Z       �[32m+�[0m �[0m�[1m�[0midle_timeout�[0m�[0m         = 300
2021-07-09T03:04:31.0168155Z       �[32m+�[0m �[0m�[1m�[0mimage�[0m�[0m                = (known after apply)
2021-07-09T03:04:31.0168895Z       �[32m+�[0m �[0m�[1m�[0minstance_hdd_size�[0m�[0m    = 35
2021-07-09T03:04:31.0169666Z       �[32m+�[0m �[0m�[1m�[0minstance_ip�[0m�[0m          = (known after apply)
2021-07-09T03:04:31.0170492Z       �[32m+�[0m �[0m�[1m�[0minstance_launch_time�[0m�[0m = (known after apply)
2021-07-09T03:04:31.0171313Z       �[32m+�[0m �[0m�[1m�[0minstance_type�[0m�[0m        = "g4dn.xlarge"
2021-07-09T03:04:31.0172329Z       �[32m+�[0m �[0m�[1m�[0mlabels�[0m�[0m               = "cml-runner,reviews-labeler,gpu"
2021-07-09T03:04:31.0173412Z       �[32m+�[0m �[0m�[1m�[0mname�[0m�[0m                 = "cml-reviews-labeler"
2021-07-09T03:04:31.0174232Z       �[32m+�[0m �[0m�[1m�[0mregion�[0m�[0m               = "eu-west"
2021-07-09T03:04:31.0175134Z       �[32m+�[0m �[0m�[1m�[0mrepo�[0m�[0m                 = "https://github.com/MantisAI/reviews_labeler"
2021-07-09T03:04:31.0176008Z       �[32m+�[0m �[0m�[1m�[0msingle�[0m�[0m               = false
2021-07-09T03:04:31.0176642Z       �[32m+�[0m �[0m�[1m�[0mspot�[0m�[0m                 = true
2021-07-09T03:04:31.0177274Z       �[32m+�[0m �[0m�[1m�[0mspot_price�[0m�[0m           = -1
2021-07-09T03:04:31.0177975Z       �[32m+�[0m �[0m�[1m�[0mssh_public�[0m�[0m           = (known after apply)
2021-07-09T03:04:31.0178698Z       �[32m+�[0m �[0m�[1m�[0mtoken�[0m�[0m                = (sensitive value)
2021-07-09T03:04:31.0179139Z     }
2021-07-09T03:04:31.0179352Z 
2021-07-09T03:04:31.0179986Z �[0m�[1mPlan:�[0m 1 to add, 0 to change, 0 to destroy.
2021-07-09T03:04:31.0180769Z �[0m�[0m�[1miterative_cml_runner.runner: Creating...�[0m�[0m
2021-07-09T03:04:31.0181167Z 
2021-07-09T03:04:31.0182947Z 	�[31m╷�[0m�[0m
2021-07-09T03:04:31.0184197Z �[31m│�[0m �[0m�[1m�[31mError: �[0m�[0m�[1mFailed creating the machine: Not able to decode: MaxSpotInstanceCountExceeded: Max spot instance count exceeded
2021-07-09T03:04:31.0185671Z �[31m│�[0m �[0m	status code: 400, request id: f744916e-005c-4da0-9b5a-791d76033512�[0m
2021-07-09T03:04:31.0186345Z �[31m│�[0m �[0m
2021-07-09T03:04:31.0186958Z �[31m│�[0m �[0m�[0m  with iterative_cml_runner.runner,
2021-07-09T03:04:31.0187807Z �[31m│�[0m �[0m  on main.tf line 14, in resource "iterative_cml_runner" "runner":
2021-07-09T03:04:31.0188651Z �[31m│�[0m �[0m  14: resource "iterative_cml_runner" "runner" �[4m{�[0m�[0m
2021-07-09T03:04:31.0189247Z �[31m│�[0m �[0m
2021-07-09T03:04:31.0189675Z �[31m╵�[0m�[0m
2021-07-09T03:04:31.0189905Z 
2021-07-09T03:04:31.0190382Z     at /usr/local/lib/node_modules/@dvcorg/cml/src/utils.js:14:27
2021-07-09T03:04:31.0191134Z     at ChildProcess.exithandler (child_process.js:326:5)
2021-07-09T03:04:31.0191871Z     at ChildProcess.emit (events.js:375:28)
2021-07-09T03:04:31.0192510Z     at maybeClose (internal/child_process.js:1055:16)
2021-07-09T03:04:31.0193320Z     at Process.ChildProcess._handle.onexit (internal/child_process.js:288:5)
2021-07-09T03:04:51.0409943Z ##[error]Process completed with exit code 1.
2021-07-09T03:04:51.0534457Z Post job cleanup.
2021-07-09T03:04:51.1567649Z [command]/usr/bin/git version
2021-07-09T03:04:51.1607611Z git version 2.32.0
2021-07-09T03:04:51.1638673Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-07-09T03:04:51.1670059Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-07-09T03:04:51.1874198Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-07-09T03:04:51.1896705Z http.https://github.com/.extraheader
2021-07-09T03:04:51.1905764Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2021-07-09T03:04:51.1934798Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-07-09T03:04:51.2191245Z Cleaning up orphan processes

@DavidGOrtega
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The reason for failure as you will see in the log is that AWS has only permitted us 4 vCPUS of the g type, so it reached the limit with the new instance (while the old one was terminating) and so failed. Is there any chance that the issue I am experiencing could be related to the resume functionality for spot instances mentioned in #650.

Yes it is. Its resuming the failed job. Now you would be able to train really big models in spot instances transparently

@DavidGOrtega
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DavidGOrtega commented Jul 9, 2021

After a batch of 150 runs I can say that termination did not fail a single time.

The only plausible reason is that we have a synthetic chrono based on runners logs. Once a new job arrives we reset it and stop it until the job is completed. Maybe the completion log is not arriving... that would end up with the chrono not counting and the idle timeout not being effective.

@ivyleavedtoadflax
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After a batch of 150 runs I can say that termination did not fail a single time.

💯💪

@DavidGOrtega
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DavidGOrtega commented Jul 9, 2021

The only plausible reason is that we have a synthetic chrono based on runners logs. Once a new job arrives we reset it and stop it until the job is completed. Maybe the completion log is not arriving... that would end up with the chrono not counting and the idle timeout not being effective.

This is the only plausible error; To solve it we could check the status of the runner (active, idle) during a job execution.
If the runner is idle but the job is running we can dispose the runner

@iterative/cml

@jamt9000
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I have observed this too, with instances started with --single staying up for days. As a workaround I am now using echo "/sbin/poweroff" | /usr/bin/at now + 60 min on startup to schedule a shutdown.

Screenshot 2021-07-14 at 12 31 50 copy

(I have also had the no-name issue happen once).

@DavidGOrtega
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Thanks for the insights! @jamt9000 seems to be related to single then?!

@ivyleavedtoadflax
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ivyleavedtoadflax commented Jul 17, 2021

In my case, I've never use --single before, but we do have the instance type in common. Not sure if that is interesting or not. Still seeing this bug though, the latest one was yesterday.

@ivyleavedtoadflax
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I managed to reproduce the unnamed instance today (unintentionally). Note that I was using cml 0.4.7 (not sure if this is significant):

image

@DavidGOrtega
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@ivyleavedtoadflax the reason of not being destroyed is the missing name. The provider needs a name to be able to destroy the instance. That would explain everything, however:

  • It would not explain that this happens to you with named instances
  • It's very difficult to not have an instance name. If you do not setup one in the cml-runner command it automatically creates one. If you do not setup one in the terraform provider it automatically creates one. So we are setting and controlling that twice... the only possibility could be passing an empty string?

@DavidGOrtega
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Actually, even if the name is not set the id will always be set. #525

image

So this is not the error either.
As I say, the only plausible reason is the internal job watch.

@DavidGOrtega
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but we do have the instance type in common.

I have done a batch with that instance and with 60 sec idle timeout. 0 machines were left.

here is the provider

resource "iterative_cml_runner" "runner-gh-34" {
    token = ""
    repo = "https://github.com/DavidGOrtega/"
    driver = "github"
    labels = "test1"
    idle_timeout = 60

    cloud = "aws"
    region = "us-west"
    instance_type = "c5a.4xlarge"
    spot = true
}

@DavidGOrtega
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@ivyleavedtoadflax @jamt9000 if you can access still to the machine in the console tags would help us. We destroy using the tag apposed to the name. So I need to know which tags the instance has as shown in the picture above.

@ivyleavedtoadflax
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@ivyleavedtoadflax the reason of not being destroyed is the missing name. The provider needs a name to be able to destroy the instance. That would explain everything, however:

  • It would not explain that this happens to you with named instances
  • It's very difficult to not have an instance name. If you do not setup one in the cml-runner command it automatically creates one. If you do not setup one in the terraform provider it automatically creates one. So we are setting and controlling that twice... the only possibility could be passing an empty string?

We explicitly set the instance name and it wasn't an empty string 🤷

@ivyleavedtoadflax
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@ivyleavedtoadflax @jamt9000 if you can access still to the machine in the console tags would help us. We destroy using the tag apposed to the name. So I need to know which tags the instance has as shown in the picture above.

I already terminated this one unfortunately, but if it happens again I will capture more information.

@DavidGOrtega
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@ivyleavedtoadflax thanks for the support. I was able to find the bug. Happens that sometimes the GH api takes a while to update the status of the job. It should be completed but despite that job is executed successfully and the the UI shows green the status via API is still 'queued'. Opposed to GL in GH we need to guess the job id since the logs are not providing them.

@ivyleavedtoadflax
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Amazing, great work @DavidGOrtega 👏

@jamt9000
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I am also seeing that workflows that have already completed successfully get restarted which is probably related to this and #583

@DavidGOrtega
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@jamt9000 exactly

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4 participants