env test for annotation cli tool

instituteofcancerresearch · Nov 9, 2023 · 86fefe1 · 86fefe1
1 parent 91b8c68
commit 86fefe1
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diff --git a/src/SOPRANO/utils/env_utils.py b/src/SOPRANO/utils/env_utils.py
@@ -75,3 +75,7 @@ def link_vep_installed():
 
 def get_genome_installed():
     return _check_exec("soprano-get-genome")
+
+
+def annotate_vcfs_installed():
+    return _check_exec("soprano-annotate")
diff --git a/tests/test_installation.py b/tests/test_installation.py
@@ -1,4 +1,5 @@
 from SOPRANO.utils.env_utils import (
+    annotate_vcfs_installed,
     app_installed,
     bedtools_installed,
     cli_installed,
@@ -35,3 +36,7 @@ def test_link_vep_installed():
 
 def test_get_genome_installed():
     assert get_genome_installed()
+
+
+def test_annotator_installed():
+    assert annotate_vcfs_installed()