From 1426efb836be8a232618f37ecbeb0256701cd60a Mon Sep 17 00:00:00 2001 From: KareemMarzouk Date: Thu, 9 Nov 2023 19:46:08 +0000 Subject: [PATCH] Change exact version defs to minimal version defs. Significantly reduce r base version requirements to help resolve deps --- pyproject.toml | 2 +- src/SOPRANO/ci_linux.yml | 6 +++--- src/SOPRANO/ci_osx.yml | 6 +++--- src/SOPRANO/local.yml | 4 ++-- 4 files changed, 9 insertions(+), 9 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 6cb1ace..f46d511 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,7 +18,7 @@ requires-python = ">=3.10" dependencies = [ "pandas", "numpy", - "streamlit == 1.27.0", + "streamlit >= 1.27.0", "requests", "types-requests", "clint" diff --git a/src/SOPRANO/ci_linux.yml b/src/SOPRANO/ci_linux.yml index 2ff27fc..77463c2 100755 --- a/src/SOPRANO/ci_linux.yml +++ b/src/SOPRANO/ci_linux.yml @@ -4,12 +4,12 @@ channels: - anaconda dependencies: - perl - - bedtools=2.31.0 + - bedtools>=2.31.0 - python>=3.10,<3.12 - pip - pandas - numpy - - streamlit==1.27.0 + - streamlit>=1.27.0 - requests - types-requests - clint @@ -17,4 +17,4 @@ dependencies: - pytest - pytest-dependency - ruff - - r-base=4.3.2 \ No newline at end of file + - r-base>=4.0.0 \ No newline at end of file diff --git a/src/SOPRANO/ci_osx.yml b/src/SOPRANO/ci_osx.yml index 6bc90c5..aa226ea 100755 --- a/src/SOPRANO/ci_osx.yml +++ b/src/SOPRANO/ci_osx.yml @@ -4,13 +4,13 @@ channels: - anaconda dependencies: - perl - - bedtools=2.31.0 + - bedtools>=2.31.0 - python>=3.10,<3.12 - coreutils - pip - pandas - numpy - - streamlit==1.27.0 + - streamlit>=1.27.0 - requests - types-requests - clint @@ -18,4 +18,4 @@ dependencies: - pytest - pytest-dependency - ruff - - r-base=4.3.2 \ No newline at end of file + - r-base>=4.0.0 \ No newline at end of file diff --git a/src/SOPRANO/local.yml b/src/SOPRANO/local.yml index c718868..65ffe26 100755 --- a/src/SOPRANO/local.yml +++ b/src/SOPRANO/local.yml @@ -4,14 +4,14 @@ channels: - anaconda dependencies: - perl - - bedtools=2.31.0 + - bedtools>=2.31.0 - ca-certificates - openssl - samtools - coreutils # [osx] - python>=3.10,<3.12 - pip - - r-base=4.3.2 + - r-base>=4.0.0 - r-devtools - r-vcfr - r-readr