29 logging #58
Workflow file for this run
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| name: SOPRANO (Dev) Tests | |
| on: | |
| pull_request: | |
| branches: | |
| - python-dev | |
| jobs: | |
| test: | |
| name: Development tests | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Setup miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge | |
| python-version: 3.11 | |
| activate-environment: soprano-dev | |
| environment-file: src/SOPRANO/ci_linux.yml | |
| use-mamba: true | |
| - name: Decompress fasta | |
| run: | | |
| gunzip data/aux_soprano/ensemble_transcriptID.fasta.gz | |
| - name: Install SOPRANO | |
| run: | | |
| conda activate soprano-dev | |
| pip install -e .[ci] | |
| - name: Test conda environment | |
| run: | | |
| conda activate soprano-dev | |
| pytest -s tests/test_installation.py | |
| - name: Test units | |
| run: | | |
| conda activate soprano-dev | |
| pytest -s tests/units |