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@inproceedings{fountas2020deep,
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title = {Sophisticated inference},
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title = {Imprecise action selection in substance use disorder: Evidence for active learning impairments when solving the explore-exploit dilemma},
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journal = {Drug and Alcohol Dependence},
year = {2020},
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title = {Greater decision uncertainty characterizes a transdiagnostic patient sample during approach-avoidance conflict: A computational modelling approach},
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journal = {Journal of Psychiatry \& Neuroscience},
year = {2021},
volume = {46},
number = {1},
pages = {E74},
doi = {10.1503/jpn.200032}
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@article{smith2022step,
title={A step-by-step tutorial on active inference and its application to empirical data},
author={Smith, Ryan and Friston, Karl J and Whyte, Christopher J},
journal={Journal of Mathematical Psychology},
volume={107},
pages={102632},
year={2022},
publisher={Elsevier},
doi={10.1016/j.jmp.2021.102632}
}
@article{friston2008variational,
title = {DEM: A variational treatment of dynamic systems},
author = {Friston, Karl J. and Trujillo-Barreto, N. and Daunizeau, Jean},
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@misc{friston2019free,
title={A free energy principle for a particular physics},
author={Friston, Karl},
eprint={1906.10184v1},
archivePrefix={arXiv},
primaryClass={q-bio.NC},
year={2019}
}
@article{millidge2020deep,
title = {Deep active inference as variational policy gradients},
author = {Millidge, Beren},
journal = {Journal of Mathematical Psychology},
year = {2020},
volume = {96},
pages = {102348},
doi = {10.1016/j.jmp.2020.102348}
}
@inproceedings{millidge2020relationship,
title = {On the relationship between active inference and control as inference},
author = {Millidge, Beren and Tschantz, Alexander and Seth, Anil K. and Buckley, Christopher L.},
booktitle = {International Workshop on Active Inference},
year = {2020},
pages = {3--11},
organization = {Springer},
doi = {10.1007/978-3-030-64919-7_1}
}
@article{ForneyLab2019,
title = {A factor graph approach to automated design of {Bayesian} signal processing algorithms},
volume = {104},
issn = {0888-613X},
url = {http://www.sciencedirect.com/science/article/pii/S0888613X18304298},
doi = {10.1016/j.ijar.2018.11.002},
abstract = {The benefits of automating design cycles for Bayesian inference-based algorithms are becoming increasingly recognized by the machine learning community. As a result, interest in probabilistic programming frameworks has much increased over the past few years. This paper explores a specific probabilistic programming paradigm, namely message passing in Forney-style factor graphs (FFGs), in the context of automated design of efficient Bayesian signal processing algorithms. To this end, we developed “ForneyLab”2 as a Julia toolbox for message passing-based inference in FFGs. We show by example how ForneyLab enables automatic derivation of Bayesian signal processing algorithms, including algorithms for parameter estimation and model comparison. Crucially, due to the modular makeup of the FFG framework, both the model specification and inference methods are readily extensible in ForneyLab. In order to test this framework, we compared variational message passing as implemented by ForneyLab with automatic differentiation variational inference (ADVI) and Monte Carlo methods as implemented by state-of-the-art tools “Edward” and “Stan”. In terms of performance, extensibility and stability issues, ForneyLab appears to enjoy an edge relative to its competitors for automated inference in state-space models.},
urldate = {2018-11-16},
journal = {International Journal of Approximate Reasoning},
author = {Cox, Marco and van de Laar, Thijs and de Vries, Bert},
month = jan,
year = {2019},
keywords = {Bayesian inference, Message passing, Factor graphs, Julia, Probabilistic programming},
pages = {185--204}
}
@article{gregory1980perceptions,
title={Perceptions as hypotheses},
author={Gregory, Richard Langton},
journal={Philosophical Transactions of the Royal Society of London. B, Biological Sciences},
volume={290},
number={1038},
pages={181--197},
year={1980},
publisher={The Royal Society London},
doi={10.1098/rstb.1980.0090}
}
@misc{brockman2016openai,
title={Openai gym},
author={Brockman, Greg and Cheung, Vicki and Pettersson, Ludwig and Schneider, Jonas and Schulman, John and Tang, Jie and Zaremba, Wojciech},
eprint={1606.01540v1},
archivePrefix={arXiv},
primaryClass={cs.LG},
year={2016}
}
@article{friston2016active,
title = {Active inference and learning},
author = {Friston, Karl J. and FitzGerald, Thomas and Rigoli, Francesco and Schwartenbeck, Philipp and O'Doherty, John and Pezzulo, Giovanni},
journal = {Neuroscience \& Biobehavioral Reviews},
year = {2016},
volume = {68},
pages = {862--879},
doi = {10.1016/j.neubiorev.2016.06.022}
}
@article{dayan1995helmholtz,
title = {The Helmholtz Machine},
author = {Dayan, Peter and Hinton, Geoffrey E. and Neal, Radford M. and Zemel, Richard S.},
journal = {Neural Computation},
year = {1995},
volume = {7},
number = {5},
pages = {889--904},
doi = {10.1162/neco.1995.7.5.889}
}
@misc{von1910treatise,
title = {Treatise on physiological optics (Vol. 3)},
author = {Von Helmholtz, Herman and Southall, JPC},
year = {1910},
publisher = {Dover, New York},
doi = {10.1037/13536-000}
}
@inproceedings{hinton1983optimal,
title = {Optimal perceptual inference},
author = {Hinton, Geoffrey E. and Sejnowski, Terrence J.},
booktitle = {Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition},
volume = {448},
year = {1983},
organization = {Citeseer},
url = {http://www.cs.toronto.edu/~hinton/absps/optimal.pdf}
}
@inproceedings{baioumy2021towards,
title={Towards Stochastic Fault-Tolerant Control Using Precision Learning and Active Inference},
author={Baioumy, Mohamed and Pezzato, Corrado and Corbato, Carlos Hernandez and Hawes, Nick and Ferrari, Riccardo},
booktitle={Machine Learning and Principles and Practice of Knowledge Discovery in Databases},
year={2022},
publisher={Springer International Publishing},
pages={681--691},
isbn={978-3-030-93736-2},
doi = {10.1007/978-3-030-93736-2_48}
}
@article{ccatal2021robot,
title = {Robot navigation as hierarchical active inference},
author = {{\c{C}}atal, Ozan and Verbelen, Tim and Van de Maele, Toon and Dhoedt, Bart and Safron, Adam},
journal = {Neural Networks},
year = {2021},
volume = {142},
pages = {192--204},
doi = {10.1016/j.neunet.2021.05.010}
}
@article{wirkuttis2021leading,
title = {Leading or following? Dyadic robot imitative interaction using the active inference framework},
author = {Wirkuttis, Nadine and Tani, Jun},
journal = {IEEE Robotics and Automation Letters},
year = {2021},
volume = {6},
number = {3},
pages = {6024--6031},
doi = {10.1109/LRA.2021.3090015}
}
@article{martinez2021probabilistic,
title = {Probabilistic modeling for optimization of bioreactors using reinforcement learning with active inference},
author = {Mart{\'i}nez, Ernesto C. and Kim, Jong Woo and Barz, Tilman and Bournazou, Mariano N. Cruz},
journal = {Computer Aided Chemical Engineering},
year = {2021},
volume = {50},
pages = {419--424},
doi = {10.1016/B978-0-323-88506-5.50066-8}
}
@misc{moreno2021pid,
title = {PID control as a process of active inference applied to a refrigeration system},
author = {Moreno, Adri{\'a}n Rocandio},
year = {2021},
url = {https://projekter.aau.dk/projekter/files/415131289/1034_PID_Control_as_Active_Inference.pdf}
}
@article{parr2019generalised,
title = {Generalised free energy and active inference},
author = {Parr, Thomas and Friston, Karl J.},
journal = {Biological Cybernetics},
year = {2019},
volume = {113},
number = {5},
pages = {495--513},
doi = {10.1007/s00422-019-00805-w}
}
@misc{hipolito2021enactive,
title = {Enactive-Dynamic Social Cognition and Active Inference},
author = {Hip{\'o}lito, In{\^e}s and van Es, Thomas},
year = {2021},
url = {http://philsci-archive.pitt.edu/19653/}
}
@article{fox2021active,
title = {Active inference: Applicability to different types of social organization explained through reference to industrial engineering and quality management},
author = {Fox, Stephen},
journal = {Entropy},
year = {2021},
volume = {23},
number = {2},
pages = {198},
doi = {10.3390/e23020198}
}
@article{tison2021communication,
title = {Communication as socially extended active inference: An ecological approach to communicative behavior},
author = {Tison, Remi and Poirier, Pierre},
journal = {Ecological Psychology},
year = {2021},
volume = {33},
pages = {197--235},
doi = {10.1080/10407413.2021.1965480}
}
@article{friston2013life,
title = {Life as we know it},
author = {Friston, Karl J.},
journal = {Journal of the Royal Society Interface},
year = {2013},
volume = {10},
number = {86},
pages = {20130475},
doi = {10.1098/rsif.2013.0475}
}
@article{schwartenbeck2019computational,
title = {Computational mechanisms of curiosity and goal-directed exploration},
author = {Schwartenbeck, Philipp and Passecker, Johannes and Hauser, Tobias U. and FitzGerald, Thomas and Kronbichler, Martin and Friston, Karl J.},
journal = {Elife},
year = {2019},
volume = {8},
pages = {e41703},
doi = {10.7554/eLife.41703}
}
@article{friston2017active,
title = {Active inference, curiosity and insight},
author = {Friston, Karl J. and Lin, Marco and Frith, Christopher D. and Pezzulo, Giovanni and Hobson, J. Allan and Ondobaka, Sasha},
journal = {Neural Computation},
year = {2017},
volume = {29},
number = {10},
pages = {2633--2683},
doi = {10.1162/neco_a_00999}
}
@misc{lance_lnA,
author = "Da Costa, Lancelot",
date = "2021",
howpublished = "Personal communication"
}
@article{holmes2021active,
title={Active inference, selective attention, and the cocktail party problem},
author={Holmes, Emma and Parr, Thomas and Griffiths, Timothy D and Friston, Karl J},
journal={Neuroscience \& Biobehavioral Reviews},
volume={131},
pages={1288--1304},
year={2021},
publisher={Elsevier},
doi={10.1016/j.neubiorev.2021.09.038}
}
@article{adams2021everything,
title={Everything is connected: Inference and attractors in delusions},
author={Adams, Rick A and Vincent, Peter and Benrimoh, David and Friston, Karl J and Parr, Thomas},
journal={Schizophrenia research},
year={2021},
publisher={Elsevier},
doi={10.1016/j.schres.2021.07.032}
}
@article{parr2020prefrontal,
title={Prefrontal computation as active inference},
author={Parr, Thomas and Rikhye, Rajeev Vijay and Halassa, Michael M and Friston, Karl J},
journal={Cerebral Cortex},
volume={30},
number={2},
pages={682--695},
year={2020},
publisher={Oxford University Press}
}
@article{smith2021long,
title={Long-term stability of computational parameters during approach-avoidance conflict in a transdiagnostic psychiatric patient sample},
author={Smith, Ryan and Kirlic, Namik and Stewart, Jennifer L and Touthang, James and Kuplicki, Rayus and McDermott, Timothy J and Taylor, Samuel and Khalsa, Sahib S and Paulus, Martin P and Aupperle, Robin L},
journal={Scientific reports},
volume={11},
number={1},
pages={1--13},
year={2021},
publisher={Nature Publishing Group},
doi={10.1038/s41598-021-91308-x}
}