diff --git a/inception/inception-app-webapp/pom.xml b/inception/inception-app-webapp/pom.xml index 25c797d9e6e..556559147dc 100644 --- a/inception/inception-app-webapp/pom.xml +++ b/inception/inception-app-webapp/pom.xml @@ -381,6 +381,10 @@ de.tudarmstadt.ukp.inception.app inception-io-conll + + de.tudarmstadt.ukp.inception.app + inception-io-docx + de.tudarmstadt.ukp.inception.app inception-io-imscwb @@ -974,6 +978,7 @@ de.tudarmstadt.ukp.inception.app:inception-io-bioc de.tudarmstadt.ukp.inception.app:inception-io-brat de.tudarmstadt.ukp.inception.app:inception-io-conll + de.tudarmstadt.ukp.inception.app:inception-io-docx de.tudarmstadt.ukp.inception.app:inception-io-imscwb de.tudarmstadt.ukp.inception.app:inception-io-html de.tudarmstadt.ukp.inception.app:inception-io-intertext diff --git a/inception/inception-bom/pom.xml b/inception/inception-bom/pom.xml index 556f7d5db65..9eb15784821 100644 --- a/inception/inception-bom/pom.xml +++ b/inception/inception-bom/pom.xml @@ -443,6 +443,11 @@ inception-io-bioc 34.0-SNAPSHOT + + de.tudarmstadt.ukp.inception.app + inception-io-brat + 34.0-SNAPSHOT + de.tudarmstadt.ukp.inception.app inception-io-conll @@ -450,7 +455,7 @@ de.tudarmstadt.ukp.inception.app - inception-io-brat + inception-io-docx 34.0-SNAPSHOT diff --git a/inception/inception-io-docx/LICENSE.txt b/inception/inception-io-docx/LICENSE.txt new file mode 100644 index 00000000000..d6456956733 --- /dev/null +++ b/inception/inception-io-docx/LICENSE.txt @@ -0,0 +1,202 @@ + + Apache License + Version 2.0, January 2004 + http://www.apache.org/licenses/ + + TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION + + 1. 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We also recommend that a + file or class name and description of purpose be included on the + same "printed page" as the copyright notice for easier + identification within third-party archives. + + Copyright [yyyy] [name of copyright owner] + + Licensed under the Apache License, Version 2.0 (the "License"); + you may not use this file except in compliance with the License. + You may obtain a copy of the License at + + http://www.apache.org/licenses/LICENSE-2.0 + + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. diff --git a/inception/inception-io-docx/pom.xml b/inception/inception-io-docx/pom.xml new file mode 100644 index 00000000000..8a68ca22a1c --- /dev/null +++ b/inception/inception-io-docx/pom.xml @@ -0,0 +1,82 @@ + + + 4.0.0 + + de.tudarmstadt.ukp.inception.app + inception-app + 34.0-SNAPSHOT + + inception-io-docx + INCEpTION - IO - DOCX + + + de.tudarmstadt.ukp.inception.app + inception-api-formats + + + de.tudarmstadt.ukp.inception.app + inception-model + + + de.tudarmstadt.ukp.inception.app + inception-support + + + de.tudarmstadt.ukp.inception.app + inception-io-xml + + + + org.apache.wicket + wicket-core + + + + org.springframework + spring-core + + + org.springframework + spring-context + + + org.springframework.boot + spring-boot-autoconfigure + + + + org.apache.uima + uimaj-core + + + org.apache.uima + uimafit-core + + + + org.apache.commons + commons-lang3 + + + + org.dkpro.core + dkpro-core-api-io-asl + + + \ No newline at end of file diff --git a/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/Docx.css b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/Docx.css new file mode 100644 index 00000000000..fb963acfc07 --- /dev/null +++ b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/Docx.css @@ -0,0 +1,37 @@ +@namespace w url('http://schemas.openxmlformats.org/wordprocessingml/2006/main'); + +/* Paragraph Properties */ +w|p { + display: block; + text-align: left; + margin-bottom: 10pt; + margin-left: 1em; + line-height: 1.5; +} + +/* Run Properties */ +w|r { + font-size: 12pt; + color: #000000; + font-weight: normal; + font-style: normal; +} + +/* Text */ +w|t { + font-family: Arial, sans-serif; +} + +w|tbl { + display: table; + width: 100%; + border-collapse: collapse; +} + +w|tr { + display: table-row; +} + +w|tc { + display: table-cell; +} diff --git a/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxCssReference.java b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxCssReference.java new file mode 100644 index 00000000000..4f31ee02307 --- /dev/null +++ b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxCssReference.java @@ -0,0 +1,46 @@ +/* + * Licensed to the Technische Universität Darmstadt under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The Technische Universität Darmstadt + * licenses this file to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package de.tudarmstadt.ukp.inception.io.docx; + +import org.apache.wicket.request.resource.CssResourceReference; + +public class DocxCssReference + extends CssResourceReference +{ + private static final long serialVersionUID = 1L; + + private static final DocxCssReference INSTANCE = new DocxCssReference(); + + /** + * Gets the instance of the resource reference + * + * @return the single instance of the resource reference + */ + public static DocxCssReference get() + { + return INSTANCE; + } + + /** + * Private constructor + */ + private DocxCssReference() + { + super(DocxCssReference.class, "Docx.css"); + } +} diff --git a/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentPolicy.yaml b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentPolicy.yaml new file mode 100644 index 00000000000..42b6877bf2a --- /dev/null +++ b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentPolicy.yaml @@ -0,0 +1,46 @@ +# Licensed to the Technische Universität Darmstadt under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The Technische Universität Darmstadt +# licenses this file to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + +name: DOCX XML policy +version: 1.0 +case_sensitive: false +default_attribute_action: DROP +default_element_action: DROP +debug: true +policies: + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}document"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}body"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}sectPr"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}p"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}t"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}r"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}rPr"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}pPr"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}numPr"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}spacing"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}numId"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}ilvl"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}rFonts"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}pStyle"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}tbl"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}gridCol"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}tr"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}tc"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}b"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}bCs"], action: PASS } + - { elements: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}jc"], action: PASS } + - { attributes: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}paraId"], action: PASS } + - { attributes: ["{http://schemas.openxmlformats.org/wordprocessingml/2006/main}val"], action: PASS } diff --git a/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentReader.java b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentReader.java new file mode 100644 index 00000000000..88e6d1c1ab5 --- /dev/null +++ b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentReader.java @@ -0,0 +1,62 @@ +/* + * Licensed to the Technische Universität Darmstadt under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The Technische Universität Darmstadt + * licenses this file to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package de.tudarmstadt.ukp.inception.io.docx; + +import java.io.IOException; +import java.util.zip.ZipEntry; +import java.util.zip.ZipFile; + +import org.apache.uima.UimaContext; +import org.apache.uima.collection.CollectionException; +import org.apache.uima.jcas.JCas; +import org.apache.uima.resource.ResourceInitializationException; +import org.dkpro.core.api.io.JCasResourceCollectionReader_ImplBase; + +public class DocxDocumentReader + extends JCasResourceCollectionReader_ImplBase +{ + @Override + public void initialize(UimaContext aContext) throws ResourceInitializationException + { + super.initialize(aContext); + } + + @Override + public void getNext(JCas aJCas) throws IOException, CollectionException + { + Resource res = nextFile(); + initCas(aJCas, res); + + try (var iirdsFile = new ZipFile(res.getResource().getFile())) { + for (var zipEnumerate = iirdsFile.entries(); zipEnumerate.hasMoreElements();) { + ZipEntry entry = (ZipEntry) zipEnumerate.nextElement(); + if (entry.getName().equals("word/document.xml")) { + var loader = new DocxToCas(); + loader.loadXml(aJCas, iirdsFile.getInputStream(entry)); + break; + } + } + } + catch (IOException e) { + throw e; + } + catch (Exception e) { + throw new CollectionException(e); + } + } +} diff --git a/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxFormatSupport.java b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxFormatSupport.java new file mode 100644 index 00000000000..cf18f58d072 --- /dev/null +++ b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxFormatSupport.java @@ -0,0 +1,83 @@ +/* + * Licensed to the Technische Universität Darmstadt under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The Technische Universität Darmstadt + * licenses this file to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package de.tudarmstadt.ukp.inception.io.docx; + +import static java.util.Arrays.asList; +import static org.apache.uima.fit.factory.CollectionReaderFactory.createReaderDescription; + +import java.io.IOException; +import java.util.List; +import java.util.Optional; + +import org.apache.uima.collection.CollectionReaderDescription; +import org.apache.uima.resource.ResourceInitializationException; +import org.apache.uima.resource.metadata.TypeSystemDescription; +import org.apache.wicket.request.resource.ResourceReference; + +import de.tudarmstadt.ukp.clarin.webanno.api.format.FormatSupport; +import de.tudarmstadt.ukp.clarin.webanno.model.Project; +import de.tudarmstadt.ukp.inception.support.io.WatchedResourceFile; +import de.tudarmstadt.ukp.inception.support.xml.sanitizer.PolicyCollection; +import de.tudarmstadt.ukp.inception.support.xml.sanitizer.PolicyCollectionIOUtils; + +public class DocxFormatSupport + implements FormatSupport +{ + public static final String ID = "docx"; + public static final String NAME = "DOCX"; + + @Override + public String getId() + { + return ID; + } + + @Override + public String getName() + { + return NAME; + } + + @Override + public boolean isReadable() + { + return true; + } + + @Override + public CollectionReaderDescription getReaderDescription(Project aProject, + TypeSystemDescription aTSD) + throws ResourceInitializationException + { + return createReaderDescription(DocxDocumentReader.class, aTSD); + } + + @Override + public Optional getPolicy() throws IOException + { + return new WatchedResourceFile( + getClass().getResource("/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentPolicy.yaml"), + PolicyCollectionIOUtils::loadPolicies).get(); + } + + @Override + public List getCssStylesheets() + { + return asList(DocxCssReference.get()); + } +} diff --git a/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxToCas.java b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxToCas.java new file mode 100644 index 00000000000..7009a51dfdc --- /dev/null +++ b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/DocxToCas.java @@ -0,0 +1,47 @@ +/* + * Licensed to the Technische Universität Darmstadt under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The Technische Universität Darmstadt + * licenses this file to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package de.tudarmstadt.ukp.inception.io.docx; + +import java.io.IOException; +import java.io.InputStream; + +import javax.xml.parsers.ParserConfigurationException; + +import org.apache.uima.jcas.JCas; +import org.xml.sax.InputSource; +import org.xml.sax.SAXException; + +import de.tudarmstadt.ukp.inception.io.xml.dkprocore.CasXmlHandler; +import de.tudarmstadt.ukp.inception.support.xml.XmlParserUtils; + +public class DocxToCas +{ + public void loadXml(JCas aJCas, InputStream aInputStream) throws IOException + { + CasXmlHandler handler = new CasXmlHandler(aJCas); + handler.captureText(true); + + try { + var parser = XmlParserUtils.newSaxParser(); + parser.parse(new InputSource(aInputStream), handler); + } + catch (ParserConfigurationException | SAXException e) { + throw new IOException(e); + } + } +} diff --git a/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/config/DocxSupportAutoConfiguration.java b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/config/DocxSupportAutoConfiguration.java new file mode 100644 index 00000000000..8132c7fa191 --- /dev/null +++ b/inception/inception-io-docx/src/main/java/de/tudarmstadt/ukp/inception/io/docx/config/DocxSupportAutoConfiguration.java @@ -0,0 +1,35 @@ +/* + * Licensed to the Technische Universität Darmstadt under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The Technische Universität Darmstadt + * licenses this file to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package de.tudarmstadt.ukp.inception.io.docx.config; + +import org.springframework.boot.autoconfigure.condition.ConditionalOnProperty; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; + +import de.tudarmstadt.ukp.inception.io.docx.DocxFormatSupport; + +@Configuration +@ConditionalOnProperty(prefix = "format.docx", name = "enabled", havingValue = "true", matchIfMissing = false) +public class DocxSupportAutoConfiguration +{ + @Bean + public DocxFormatSupport docxFormatSupport() + { + return new DocxFormatSupport(); + } +} diff --git a/inception/inception-io-docx/src/main/resources/META-INF/spring.factories b/inception/inception-io-docx/src/main/resources/META-INF/spring.factories new file mode 100644 index 00000000000..f3641c1dcc8 --- /dev/null +++ b/inception/inception-io-docx/src/main/resources/META-INF/spring.factories @@ -0,0 +1,2 @@ +org.springframework.boot.autoconfigure.EnableAutoConfiguration=\ +de.tudarmstadt.ukp.inception.io.docx.config.DocxSupportAutoConfiguration diff --git a/inception/inception-io-docx/src/test/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentReaderTest.java b/inception/inception-io-docx/src/test/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentReaderTest.java new file mode 100644 index 00000000000..1b7db48b57b --- /dev/null +++ b/inception/inception-io-docx/src/test/java/de/tudarmstadt/ukp/inception/io/docx/DocxDocumentReaderTest.java @@ -0,0 +1,49 @@ +/* + * Licensed to the Technische Universität Darmstadt under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The Technische Universität Darmstadt + * licenses this file to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package de.tudarmstadt.ukp.inception.io.docx; + +import static org.apache.uima.cas.SerialFormat.XMI_PRETTY; +import static org.apache.uima.fit.factory.CollectionReaderFactory.createReader; +import static org.assertj.core.api.Assertions.assertThat; + +import org.apache.uima.fit.factory.CasFactory; +import org.apache.uima.util.CasIOUtils; +import org.dkpro.core.api.xml.type.XmlElement; +import org.dkpro.core.api.xml.type.XmlTextNode; +import org.junit.jupiter.api.Test; + +class DocxDocumentReaderTest +{ + @Test + void test() throws Exception + { + var sut = createReader( // + DocxDocumentReader.class, // + DocxDocumentReader.PARAM_SOURCE_LOCATION, "classpath*:docx/text.docx"); + + var cas = CasFactory.createCas(); + sut.getNext(cas); + + CasIOUtils.save(cas, System.out, XMI_PRETTY); + + assertThat(cas.select(XmlElement.class).asList()).hasSize(15); + assertThat(cas.select(XmlTextNode.class).filter(n -> n.getCaptured())).hasSize(1); + assertThat(cas.select(XmlTextNode.class).filter(n -> !n.getCaptured())).hasSize(0); + assertThat(cas.getDocumentText()).contains("This is a text."); + } +} diff --git a/inception/inception-io-docx/src/test/resources/docx/text.docx b/inception/inception-io-docx/src/test/resources/docx/text.docx new file mode 100644 index 00000000000..f022e4d7e36 Binary files /dev/null and b/inception/inception-io-docx/src/test/resources/docx/text.docx differ diff --git a/inception/pom.xml b/inception/pom.xml index 300b1d9e8f0..e135a64b8b5 100644 --- a/inception/pom.xml +++ b/inception/pom.xml @@ -230,6 +230,7 @@ inception-io-bioc inception-io-brat inception-io-conll + inception-io-docx inception-io-json inception-io-html inception-io-nif