From 6fa31c011788981a28e104759f59220a214d348c Mon Sep 17 00:00:00 2001 From: Richard Eckart de Castilho Date: Tue, 30 Apr 2024 17:18:55 +0200 Subject: [PATCH] #4780 - Optionally include example documents in project templates - Include example documents with the named entity annotation project template --- .../processing/curation/BulkCurationTask.java | 2 +- .../api/ProjectInitializationRequest.java | 78 + .../project/api/ProjectInitializer.java | 18 +- .../inception/project/api/ProjectService.java | 22 +- .../basic/BasicProjectInitializer.java | 3 +- .../BasicDocumentLabelLayerInitializer.java | 21 +- .../BasicDocumentLabelTagSetInitializer.java | 11 +- ...sicDocumentLabelingProjectInitializer.java | 21 +- .../pom.xml | 4 + .../EntityAnnotationProjectInitializer.java | 90 +- .../EntityAnnotationProjectInitializer.svg | 0 ...uenceClassifierRecommenderInitializer.java | 2 +- ...medEntityStringRecommenderInitializer.java | 2 +- .../neannotation/wicket-package.properties | 16 + ...gProjectInitializersAutoConfiguration.java | 16 +- .../wikidatalinking/wicket-package.properties | 1 - ...northern-british-columbia_abbreviated.json | 2846 +++++++++++ ..._northern-british-columbia_abbreviated.txt | 24 + ...rkstons-new-wine-district_abbreviated.json | 4476 +++++++++++++++++ ...arkstons-new-wine-district_abbreviated.txt | 40 + .../SemPredArgLayerInitializer.java | 12 +- .../webanno/project/ProjectServiceImpl.java | 24 +- .../ukp/inception/scheduling/Task.java | 2 +- .../index/mtas/MtasDocumentIndexTest.java | 45 +- .../ui/core/dashboard/DashboardMenu.java | 3 +- .../ProjectInitializationState.java | 41 + .../ProjectTemplateSelectionDialogPanel.html | 14 +- .../ProjectTemplateSelectionDialogPanel.java | 44 +- .../ui/project/detail/ProjectDetailPanel.java | 3 +- .../ui/project/layers/ProjectLayersPanel.java | 5 +- 30 files changed, 7788 insertions(+), 98 deletions(-) create mode 100644 inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectInitializationRequest.java rename inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/{wikidatalinking => neannotation}/EntityAnnotationProjectInitializer.java (50%) rename inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/{wikidatalinking => neannotation}/EntityAnnotationProjectInitializer.svg (100%) rename inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/{wikidatalinking => neannotation}/NamedEntitySequenceClassifierRecommenderInitializer.java (97%) rename inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/{wikidatalinking => neannotation}/NamedEntityStringRecommenderInitializer.java (97%) create mode 100644 inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/wicket-package.properties create mode 100644 inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_08_13_northern-british-columbia_abbreviated.json create mode 100644 inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_08_13_northern-british-columbia_abbreviated.txt create mode 100644 inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_10_22_lewiston-clarkstons-new-wine-district_abbreviated.json create mode 100644 inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_10_22_lewiston-clarkstons-new-wine-district_abbreviated.txt create mode 100644 inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectInitializationState.java diff --git a/inception/inception-processing/src/main/java/de/tudarmstadt/ukp/inception/processing/curation/BulkCurationTask.java b/inception/inception-processing/src/main/java/de/tudarmstadt/ukp/inception/processing/curation/BulkCurationTask.java index cd6467d6beb..6d5b8647eab 100644 --- a/inception/inception-processing/src/main/java/de/tudarmstadt/ukp/inception/processing/curation/BulkCurationTask.java +++ b/inception/inception-processing/src/main/java/de/tudarmstadt/ukp/inception/processing/curation/BulkCurationTask.java @@ -121,7 +121,7 @@ public void execute() throws IOException, UIMAException // deleting the users annotations!!!), currently fixed by warn message to user // prepare merged CAS curationMergeService.mergeCasses(doc, targetUser, targetCas, annotatorCasses, - mergeStrategy, annotationLayers); + mergeStrategy, annotationLayers, true); var targetAnnDoc = documentService.createOrGetAnnotationDocument(doc, targetUser); documentService.writeAnnotationCas(targetCas, targetAnnDoc, diff --git a/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectInitializationRequest.java b/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectInitializationRequest.java new file mode 100644 index 00000000000..972f5293a54 --- /dev/null +++ b/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectInitializationRequest.java @@ -0,0 +1,78 @@ +/* + * Licensed to the Technische Universität Darmstadt under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The Technische Universität Darmstadt + * licenses this file to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package de.tudarmstadt.ukp.inception.project.api; + +import java.util.Objects; + +import de.tudarmstadt.ukp.clarin.webanno.model.Project; + +public class ProjectInitializationRequest +{ + private final Project project; + private final boolean includeSampleData; + + private ProjectInitializationRequest(Builder builder) + { + project = builder.project; + includeSampleData = builder.includeSampleData; + } + + public static Builder builder() + { + return new Builder(); + } + + public Project getProject() + { + return project; + } + + public boolean isIncludeSampleData() + { + return includeSampleData; + } + + public static final class Builder + { + private Project project; + private boolean includeSampleData; + + private Builder() + { + } + + public Builder withProject(Project aProject) + { + project = aProject; + return this; + } + + public Builder withIncludeSampleData(boolean aIncludeSampleData) + { + includeSampleData = aIncludeSampleData; + return this; + } + + public ProjectInitializationRequest build() + { + Objects.requireNonNull(project, "Parameter [project] must be specified."); + + return new ProjectInitializationRequest(this); + } + } +} diff --git a/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectInitializer.java b/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectInitializer.java index 8243e018948..449cb7bc786 100644 --- a/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectInitializer.java +++ b/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectInitializer.java @@ -35,5 +35,21 @@ default boolean applyByDefault() List> getDependencies(); - void configure(Project aProject) throws IOException; + default void configure(ProjectInitializationRequest aRequest) throws IOException + { + configure(aRequest.getProject()); + } + + /** + * @param aProject + * the project to initialize. + * @throws IOException + * if there is a problem. + * @deprecated Implement {@link #configure(ProjectInitializationRequest)} instead. + */ + @Deprecated + default void configure(Project aProject) throws IOException + { + // Do nothing + } } diff --git a/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectService.java b/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectService.java index 18eb89321a4..8d9b4f3758b 100644 --- a/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectService.java +++ b/inception/inception-project-api/src/main/java/de/tudarmstadt/ukp/inception/project/api/ProjectService.java @@ -568,16 +568,30 @@ boolean hasRole(String aUser, Project aProject, PermissionLevel aRole, * Initialize the project with default {@link AnnotationLayer}, {@link TagSet}s, and {@link Tag} * s. This is done per Project. * - * @param aProject - * the project. + * @param aRequest + * the project initialization request. * @throws IOException * if an I/O error occurs. */ - void initializeProject(Project aProject) throws IOException; + void initializeProject(ProjectInitializationRequest aRequest) throws IOException; - void initializeProject(Project aProject, List aInitializers) + void initializeProject(ProjectInitializationRequest aRequest, + List aInitializers) throws IOException; + default void initializeProject(Project aProject) throws IOException + { + var request = ProjectInitializationRequest.builder().withProject(aProject).build(); + initializeProject(request); + } + + default void initializeProject(Project aProject, List aInitializers) + throws IOException + { + var request = ProjectInitializationRequest.builder().withProject(aProject).build(); + initializeProject(request, aInitializers); + } + List listProjectInitializers(); static MDCContext withProjectLogger(Project aProject) diff --git a/inception/inception-project-initializers-basic/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/basic/BasicProjectInitializer.java b/inception/inception-project-initializers-basic/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/basic/BasicProjectInitializer.java index ed4e68ed30a..b5129baf6e5 100644 --- a/inception/inception-project-initializers-basic/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/basic/BasicProjectInitializer.java +++ b/inception/inception-project-initializers-basic/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/basic/BasicProjectInitializer.java @@ -30,6 +30,7 @@ import de.tudarmstadt.ukp.clarin.webanno.model.Project; import de.tudarmstadt.ukp.clarin.webanno.project.initializers.QuickProjectInitializer; +import de.tudarmstadt.ukp.inception.project.api.ProjectInitializationRequest; import de.tudarmstadt.ukp.inception.project.api.ProjectInitializer; import de.tudarmstadt.ukp.inception.project.initializers.basic.config.InceptionBasicProjectInitializersAutoConfiguration; @@ -96,7 +97,7 @@ public List> getDependencies() } @Override - public void configure(Project aProject) throws IOException + public void configure(ProjectInitializationRequest aRequest) throws IOException { // Nothing to do - all initialization is already done by the dependencies } diff --git a/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelLayerInitializer.java b/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelLayerInitializer.java index 7294eaadd36..b07576dd992 100644 --- a/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelLayerInitializer.java +++ b/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelLayerInitializer.java @@ -35,8 +35,8 @@ import de.tudarmstadt.ukp.clarin.webanno.model.AnnotationFeature; import de.tudarmstadt.ukp.clarin.webanno.model.AnnotationLayer; import de.tudarmstadt.ukp.clarin.webanno.model.Project; -import de.tudarmstadt.ukp.clarin.webanno.model.TagSet; import de.tudarmstadt.ukp.clarin.webanno.project.initializers.LayerInitializer; +import de.tudarmstadt.ukp.inception.project.api.ProjectInitializationRequest; import de.tudarmstadt.ukp.inception.project.api.ProjectInitializer; import de.tudarmstadt.ukp.inception.project.initializers.doclabeling.config.InceptionDocumentLabelingProjectInitializersAutoConfiguration; import de.tudarmstadt.ukp.inception.schema.api.AnnotationSchemaService; @@ -109,21 +109,22 @@ public List> getDependencies() } @Override - public void configure(Project aProject) throws IOException + public void configure(ProjectInitializationRequest aRequest) throws IOException { - AnnotationLayer docTagLayer = new AnnotationLayer(BASIC_DOCUMENT_LABEL_LAYER_NAME, - "Document Label", DocumentMetadataLayerSupport.TYPE, aProject, false, TOKENS, - ANY_OVERLAP); + var project = aRequest.getProject(); + + var docTagLayer = new AnnotationLayer(BASIC_DOCUMENT_LABEL_LAYER_NAME, "Document Label", + DocumentMetadataLayerSupport.TYPE, project, false, TOKENS, ANY_OVERLAP); var traits = docLayerSupport.readTraits(docTagLayer); traits.setSingleton(true); docLayerSupport.writeTraits(docTagLayer, traits); annotationSchemaService.createOrUpdateLayer(docTagLayer); - TagSet docLabelTagSet = annotationSchemaService.getTagSet( - BasicDocumentLabelTagSetInitializer.BASIC_DOCUMENT_LABEL_TAG_SET_NAME, aProject); + var docLabelTagSet = annotationSchemaService.getTagSet( + BasicDocumentLabelTagSetInitializer.BASIC_DOCUMENT_LABEL_TAG_SET_NAME, project); - annotationSchemaService.createFeature(new AnnotationFeature(aProject, docTagLayer, - BASIC_DOCUMENT_LABEL_LABEL_FEATURE_NAME, "Label", CAS.TYPE_NAME_STRING, - "Document label", docLabelTagSet)); + annotationSchemaService.createFeature( + new AnnotationFeature(project, docTagLayer, BASIC_DOCUMENT_LABEL_LABEL_FEATURE_NAME, + "Label", CAS.TYPE_NAME_STRING, "Document label", docLabelTagSet)); } } diff --git a/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelTagSetInitializer.java b/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelTagSetInitializer.java index b7a6c14a0b2..cfe65f65c01 100644 --- a/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelTagSetInitializer.java +++ b/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelTagSetInitializer.java @@ -27,6 +27,7 @@ import de.tudarmstadt.ukp.clarin.webanno.model.Tag; import de.tudarmstadt.ukp.clarin.webanno.model.TagSet; import de.tudarmstadt.ukp.clarin.webanno.project.initializers.TagSetInitializer; +import de.tudarmstadt.ukp.inception.project.api.ProjectInitializationRequest; import de.tudarmstadt.ukp.inception.project.api.ProjectInitializer; import de.tudarmstadt.ukp.inception.project.initializers.doclabeling.config.InceptionDocumentLabelingProjectInitializersAutoConfiguration; import de.tudarmstadt.ukp.inception.schema.api.AnnotationSchemaService; @@ -75,10 +76,12 @@ public boolean alreadyApplied(Project aProject) } @Override - public void configure(Project aProject) throws IOException + public void configure(ProjectInitializationRequest aRequest) throws IOException { - TagSet tagSet = new TagSet(); - tagSet.setProject(aProject); + var project = aRequest.getProject(); + + var tagSet = new TagSet(); + tagSet.setProject(project); tagSet.setName(getName()); tagSet.setDescription("Document labels"); tagSet.setLanguage("en"); @@ -86,7 +89,7 @@ public void configure(Project aProject) throws IOException annotationSchemaService.createTagSet(tagSet); - Tag[] tags = new Tag[3]; + var tags = new Tag[3]; for (int i = 0; i < tags.length; i++) { tags[i] = new Tag(tagSet, "Label " + (i + 1)); } diff --git a/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelingProjectInitializer.java b/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelingProjectInitializer.java index 71dd6d16fb0..718da69853f 100644 --- a/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelingProjectInitializer.java +++ b/inception/inception-project-initializers-doclabeling/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/doclabeling/BasicDocumentLabelingProjectInitializer.java @@ -32,16 +32,14 @@ import de.tudarmstadt.ukp.clarin.webanno.model.Project; import de.tudarmstadt.ukp.clarin.webanno.project.initializers.QuickProjectInitializer; import de.tudarmstadt.ukp.clarin.webanno.project.initializers.TokenLayerInitializer; -import de.tudarmstadt.ukp.clarin.webanno.ui.annotation.sidebar.AnnotationSidebarState; import de.tudarmstadt.ukp.inception.preferences.PreferencesService; +import de.tudarmstadt.ukp.inception.project.api.ProjectInitializationRequest; import de.tudarmstadt.ukp.inception.project.api.ProjectInitializer; import de.tudarmstadt.ukp.inception.project.initializers.doclabeling.config.InceptionDocumentLabelingProjectInitializersAutoConfiguration; import de.tudarmstadt.ukp.inception.support.wicket.resource.Strings; import de.tudarmstadt.ukp.inception.ui.core.docanno.sidebar.DocumentMetadataSidebarFactory; import de.tudarmstadt.ukp.inception.workload.matrix.MatrixWorkloadExtension; -import de.tudarmstadt.ukp.inception.workload.matrix.trait.MatrixWorkloadTraits; import de.tudarmstadt.ukp.inception.workload.model.WorkloadManagementService; -import de.tudarmstadt.ukp.inception.workload.model.WorkloadManager; /** *

@@ -106,9 +104,10 @@ public List> getDependencies() } @Override - public void configure(Project aProject) throws IOException + public void configure(ProjectInitializationRequest aRequest) throws IOException { - aProject.setDescription(String.join("\n", + var project = aRequest.getProject(); + project.setDescription(String.join("\n", // Empty line to avoid the this text showing up in the short description of the // project overview "", // @@ -124,17 +123,15 @@ public void configure(Project aProject) throws IOException "this projects and annotators may also re-open a document for annotation if they", // "want. You can change this setting in the settings on the **Montoring** page.")); - AnnotationSidebarState sidebarState = prefService - .loadDefaultTraitsForProject(KEY_SIDEBAR_STATE, aProject); + var sidebarState = prefService.loadDefaultTraitsForProject(KEY_SIDEBAR_STATE, project); sidebarState.setExpanded(true); sidebarState.setSelectedTab(docMetaSidebar.getBeanName()); - prefService.saveDefaultTraitsForProject(KEY_SIDEBAR_STATE, aProject, sidebarState); + prefService.saveDefaultTraitsForProject(KEY_SIDEBAR_STATE, project, sidebarState); - WorkloadManager manager = workloadManagementService - .loadOrCreateWorkloadManagerConfiguration(aProject); - MatrixWorkloadTraits traits = matrixWorkloadExtension.readTraits(manager); + var manager = workloadManagementService.loadOrCreateWorkloadManagerConfiguration(project); + var traits = matrixWorkloadExtension.readTraits(manager); traits.setReopenableByAnnotator(true); - matrixWorkloadExtension.writeTraits(traits, aProject); + matrixWorkloadExtension.writeTraits(traits, project); workloadManagementService.saveConfiguration(manager); } } diff --git a/inception/inception-project-initializers-wikidatalinking/pom.xml b/inception/inception-project-initializers-wikidatalinking/pom.xml index 74fa000e903..fb17d18c766 100644 --- a/inception/inception-project-initializers-wikidatalinking/pom.xml +++ b/inception/inception-project-initializers-wikidatalinking/pom.xml @@ -69,6 +69,10 @@ de.tudarmstadt.ukp.inception.app inception-recommendation-api + + de.tudarmstadt.ukp.inception.app + inception-io-json + org.apache.wicket diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/EntityAnnotationProjectInitializer.java b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/EntityAnnotationProjectInitializer.java similarity index 50% rename from inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/EntityAnnotationProjectInitializer.java rename to inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/EntityAnnotationProjectInitializer.java index 3ea7c0004f4..a1dc5cc044d 100644 --- a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/EntityAnnotationProjectInitializer.java +++ b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/EntityAnnotationProjectInitializer.java @@ -15,7 +15,7 @@ * See the License for the specific language governing permissions and * limitations under the License. */ -package de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking; +package de.tudarmstadt.ukp.inception.project.initializers.neannotation; import java.io.IOException; import java.lang.invoke.MethodHandles; @@ -23,15 +23,22 @@ import java.util.List; import java.util.Optional; +import org.apache.uima.UIMAException; import org.apache.wicket.request.resource.PackageResourceReference; import org.apache.wicket.request.resource.ResourceReference; import org.springframework.context.ApplicationContext; import org.springframework.core.annotation.Order; +import de.tudarmstadt.ukp.clarin.webanno.api.export.DocumentImportExportService; import de.tudarmstadt.ukp.clarin.webanno.model.Project; +import de.tudarmstadt.ukp.clarin.webanno.model.SourceDocument; import de.tudarmstadt.ukp.clarin.webanno.project.initializers.NamedEntityLayerInitializer; import de.tudarmstadt.ukp.clarin.webanno.project.initializers.QuickProjectInitializer; +import de.tudarmstadt.ukp.clarin.webanno.security.UserDao; import de.tudarmstadt.ukp.dkpro.core.api.ner.type.NamedEntity; +import de.tudarmstadt.ukp.inception.documents.api.DocumentService; +import de.tudarmstadt.ukp.inception.io.jsoncas.UimaJsonCasFormatSupport; +import de.tudarmstadt.ukp.inception.project.api.ProjectInitializationRequest; import de.tudarmstadt.ukp.inception.project.api.ProjectInitializer; import de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking.config.WikiDataLinkingProjectInitializersAutoConfiguration; import de.tudarmstadt.ukp.inception.schema.api.AnnotationSchemaService; @@ -52,12 +59,19 @@ public class EntityAnnotationProjectInitializer private final AnnotationSchemaService annotationService; private final ApplicationContext context; + private final DocumentImportExportService documentImportExportService; + private final DocumentService documentService; + private final UserDao userService; public EntityAnnotationProjectInitializer(ApplicationContext aContext, - AnnotationSchemaService aAnnotationService) + AnnotationSchemaService aAnnotationService, DocumentService aDocumentService, + DocumentImportExportService aDocumentImportExportService, UserDao aUserService) { context = aContext; annotationService = aAnnotationService; + documentService = aDocumentService; + documentImportExportService = aDocumentImportExportService; + userService = aUserService; } @Override @@ -90,24 +104,84 @@ public List> getDependencies() var dependencies = new ArrayList>(); dependencies.add(NamedEntityLayerInitializer.class); - if (context.getBeanNamesForType(NamedEntityStringRecommenderInitializer.class).length > 0) { + if (isStringRecommenderAvailable()) { dependencies.add(NamedEntityStringRecommenderInitializer.class); } - if (context.getBeanNamesForType( - NamedEntitySequenceClassifierRecommenderInitializer.class).length > 0) { + if (isSequenceClassifierRecommenderAvailable()) { dependencies.add(NamedEntitySequenceClassifierRecommenderInitializer.class); } return dependencies; } + private boolean isSequenceClassifierRecommenderAvailable() + { + return context.getBeanNamesForType( + NamedEntitySequenceClassifierRecommenderInitializer.class).length > 0; + } + + private boolean isStringRecommenderAvailable() + { + return context + .getBeanNamesForType(NamedEntityStringRecommenderInitializer.class).length > 0; + } + @Override - public void configure(Project aProject) throws IOException + public void configure(ProjectInitializationRequest aRequest) throws IOException { - var layer = annotationService.findLayer(aProject, NamedEntity.class.getName()); - var valueFeature = annotationService.getFeature(NamedEntity._FeatName_value, layer); + var project = aRequest.getProject(); + project.setName(userService.getCurrentUsername() + " - New entity annotation project"); + + var layer = annotationService.findLayer(project, NamedEntity.class.getName()); + var valueFeature = annotationService.getFeature(NamedEntity._FeatName_identifier, layer); valueFeature.setEnabled(false); annotationService.createFeature(valueFeature); + + var description = """ + This project comes pre-configured for **entity annotation**. + + To annotate an entity, mark the text with the mouse, then assign a category in annotation detail + panel on the right. + """; + + if (isSequenceClassifierRecommenderAvailable() || isStringRecommenderAvailable()) { + description += """ + + The project includes recommenders that will learn from the annotations you make and suggest further + entities to annotate in the text. These suggestions will appear in gray. You can accept a + suggestion by a single click. A double-click will instead reject the suggestion. + """; + } + + if (aRequest.isIncludeSampleData()) { + importExampleDocument(project, + "foodista_blog_2019_08_13_northern-british-columbia_abbreviated.json"); + importExampleDocument(project, + "foodista_blog_2019_10_22_lewiston-clarkstons-new-wine-district_abbreviated.json"); + + description += """ + + The project includes example documents. + Open the **Annotation** page from the left sidbar menu to dive right in. + """; + } + + project.setDescription(description); + } + + private void importExampleDocument(Project aProject, String docName) throws IOException + { + var doc = SourceDocument.builder() // + .withProject(aProject) // + .withName(docName) // + .withFormat(UimaJsonCasFormatSupport.ID) // + .build(); + try (var is = getClass().getResourceAsStream("data/" + docName)) { + documentService.uploadSourceDocument(is, doc); + } + catch (UIMAException e) { + throw new IOException(e); + } } } diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/EntityAnnotationProjectInitializer.svg b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/EntityAnnotationProjectInitializer.svg similarity index 100% rename from inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/EntityAnnotationProjectInitializer.svg rename to inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/EntityAnnotationProjectInitializer.svg diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/NamedEntitySequenceClassifierRecommenderInitializer.java b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/NamedEntitySequenceClassifierRecommenderInitializer.java similarity index 97% rename from inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/NamedEntitySequenceClassifierRecommenderInitializer.java rename to inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/NamedEntitySequenceClassifierRecommenderInitializer.java index c202903e0ab..c825f3805a8 100644 --- a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/NamedEntitySequenceClassifierRecommenderInitializer.java +++ b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/NamedEntitySequenceClassifierRecommenderInitializer.java @@ -15,7 +15,7 @@ * See the License for the specific language governing permissions and * limitations under the License. */ -package de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking; +package de.tudarmstadt.ukp.inception.project.initializers.neannotation; import static java.util.Arrays.asList; diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/NamedEntityStringRecommenderInitializer.java b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/NamedEntityStringRecommenderInitializer.java similarity index 97% rename from inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/NamedEntityStringRecommenderInitializer.java rename to inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/NamedEntityStringRecommenderInitializer.java index 9c042b68027..57554857bc5 100644 --- a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/NamedEntityStringRecommenderInitializer.java +++ b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/NamedEntityStringRecommenderInitializer.java @@ -15,7 +15,7 @@ * See the License for the specific language governing permissions and * limitations under the License. */ -package de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking; +package de.tudarmstadt.ukp.inception.project.initializers.neannotation; import static java.util.Arrays.asList; diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/wicket-package.properties b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/wicket-package.properties new file mode 100644 index 00000000000..c918ddd5c1e --- /dev/null +++ b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/neannotation/wicket-package.properties @@ -0,0 +1,16 @@ +# Licensed to the Technische Universität Darmstadt under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The Technische Universität Darmstadt +# licenses this file to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +entity-annotation-project.description=Identify and classify named entities. diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/config/WikiDataLinkingProjectInitializersAutoConfiguration.java b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/config/WikiDataLinkingProjectInitializersAutoConfiguration.java index 0e28888cbda..acef38223ca 100644 --- a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/config/WikiDataLinkingProjectInitializersAutoConfiguration.java +++ b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/config/WikiDataLinkingProjectInitializersAutoConfiguration.java @@ -23,14 +23,17 @@ import org.springframework.context.annotation.Bean; import org.springframework.context.annotation.Configuration; +import de.tudarmstadt.ukp.clarin.webanno.api.export.DocumentImportExportService; +import de.tudarmstadt.ukp.clarin.webanno.security.UserDao; +import de.tudarmstadt.ukp.inception.documents.api.DocumentService; import de.tudarmstadt.ukp.inception.kb.KnowledgeBaseService; import de.tudarmstadt.ukp.inception.kb.config.KnowledgeBaseProperties; import de.tudarmstadt.ukp.inception.kb.config.KnowledgeBaseServiceAutoConfiguration; -import de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking.EntityAnnotationProjectInitializer; +import de.tudarmstadt.ukp.inception.project.initializers.neannotation.EntityAnnotationProjectInitializer; +import de.tudarmstadt.ukp.inception.project.initializers.neannotation.NamedEntitySequenceClassifierRecommenderInitializer; +import de.tudarmstadt.ukp.inception.project.initializers.neannotation.NamedEntityStringRecommenderInitializer; import de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking.EntityLinkingProjectInitializer; import de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking.NamedEntityIdentifierStringRecommenderInitializer; -import de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking.NamedEntitySequenceClassifierRecommenderInitializer; -import de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking.NamedEntityStringRecommenderInitializer; import de.tudarmstadt.ukp.inception.project.initializers.wikidatalinking.WikiDataKnowledgeBaseInitializer; import de.tudarmstadt.ukp.inception.recommendation.api.RecommendationService; import de.tudarmstadt.ukp.inception.recommendation.config.RecommenderServiceAutoConfiguration; @@ -74,9 +77,12 @@ public EntityLinkingProjectInitializer entityLinkingProjectInitializer( @Bean public EntityAnnotationProjectInitializer entityAnnotationProjectInitializer( - ApplicationContext aContext, AnnotationSchemaService aAnnotationService) + ApplicationContext aContext, AnnotationSchemaService aAnnotationService, + DocumentService aDocumentService, + DocumentImportExportService aDocumentImportExportService, UserDao aUserService) { - return new EntityAnnotationProjectInitializer(aContext, aAnnotationService); + return new EntityAnnotationProjectInitializer(aContext, aAnnotationService, + aDocumentService, aDocumentImportExportService, aUserService); } @ConditionalOnBean(RecommendationService.class) diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/wicket-package.properties b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/wicket-package.properties index 12490e75aa5..68a66a82171 100644 --- a/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/wicket-package.properties +++ b/inception/inception-project-initializers-wikidatalinking/src/main/java/de/tudarmstadt/ukp/inception/project/initializers/wikidatalinking/wicket-package.properties @@ -14,4 +14,3 @@ # See the License for the specific language governing permissions and # limitations under the License. entity-linking-project.description=Link entity mentions to WikiData. -entity-annotation-project.description=Identify and classify named entities. diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_08_13_northern-british-columbia_abbreviated.json b/inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_08_13_northern-british-columbia_abbreviated.json new file mode 100644 index 00000000000..c458c3e2642 --- /dev/null +++ b/inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_08_13_northern-british-columbia_abbreviated.json @@ -0,0 +1,2846 @@ +{ + "%TYPES" : { + "de.tudarmstadt.ukp.clarin.webanno.api.type.FeatureDefinition" : { + "%NAME" : "de.tudarmstadt.ukp.clarin.webanno.api.type.FeatureDefinition", + "%SUPER_TYPE" : "uima.cas.TOP", + "layer" : { + "%NAME" : "layer", + "%RANGE" : "de.tudarmstadt.ukp.clarin.webanno.api.type.LayerDefinition" + }, + "name" : { + "%NAME" : "name", + "%RANGE" : "uima.cas.String" + }, + "uiName" : { + "%NAME" : "uiName", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.clarin.webanno.api.type.LayerDefinition" : { + "%NAME" : "de.tudarmstadt.ukp.clarin.webanno.api.type.LayerDefinition", + "%SUPER_TYPE" : "uima.cas.TOP", + "name" : { + "%NAME" : "name", + "%RANGE" : "uima.cas.String" + }, + "uiName" : { + "%NAME" : "uiName", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.lexmorph.type.morph.MorphologicalFeatures" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.lexmorph.type.morph.MorphologicalFeatures", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "gender" : { + "%NAME" : "gender", + "%RANGE" : "uima.cas.String" + }, + "number" : { + "%NAME" : "number", + "%RANGE" : "uima.cas.String" + }, + "case" : { + "%NAME" : "case", + "%RANGE" : "uima.cas.String" + }, + "degree" : { + "%NAME" : "degree", + "%RANGE" : "uima.cas.String" + }, + "verbForm" : { + "%NAME" : "verbForm", + "%RANGE" : "uima.cas.String" + }, + "tense" : { + "%NAME" : "tense", + "%RANGE" : "uima.cas.String" + }, + "mood" : { + "%NAME" : "mood", + "%RANGE" : "uima.cas.String" + }, + "voice" : { + "%NAME" : "voice", + "%RANGE" : "uima.cas.String" + }, + "definiteness" : { + "%NAME" : "definiteness", + "%RANGE" : "uima.cas.String" + }, + "value" : { + "%NAME" : "value", + "%RANGE" : "uima.cas.String" + }, + "person" : { + "%NAME" : "person", + "%RANGE" : "uima.cas.String" + }, + "aspect" : { + "%NAME" : "aspect", + "%RANGE" : "uima.cas.String" + }, + "animacy" : { + "%NAME" : "animacy", + "%RANGE" : "uima.cas.String" + }, + "negative" : { + "%NAME" : "negative", + "%RANGE" : "uima.cas.String" + }, + "numType" : { + "%NAME" : "numType", + "%RANGE" : "uima.cas.String" + }, + "possessive" : { + "%NAME" : "possessive", + "%RANGE" : "uima.cas.String" + }, + "pronType" : { + "%NAME" : "pronType", + "%RANGE" : "uima.cas.String" + }, + "reflex" : { + "%NAME" : "reflex", + "%RANGE" : "uima.cas.String" + }, + "transitivity" : { + "%NAME" : "transitivity", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.lexmorph.type.pos.POS" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.lexmorph.type.pos.POS", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "PosValue" : { + "%NAME" : "PosValue", + "%RANGE" : "uima.cas.String" + }, + "coarseValue" : { + "%NAME" : "coarseValue", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.DocumentMetaData" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.DocumentMetaData", + "%SUPER_TYPE" : "uima.tcas.DocumentAnnotation", + "documentTitle" : { + "%NAME" : "documentTitle", + "%RANGE" : "uima.cas.String" + }, + "documentId" : { + "%NAME" : "documentId", + "%RANGE" : "uima.cas.String" + }, + "documentUri" : { + "%NAME" : "documentUri", + "%RANGE" : "uima.cas.String" + }, + "collectionId" : { + "%NAME" : "collectionId", + "%RANGE" : "uima.cas.String" + }, + "documentBaseUri" : { + "%NAME" : "documentBaseUri", + "%RANGE" : "uima.cas.String" + }, + "isLastSegment" : { + "%NAME" : "isLastSegment", + "%RANGE" : "uima.cas.Boolean" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.TagDescription" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.TagDescription", + "%SUPER_TYPE" : "uima.cas.TOP", + "name" : { + "%NAME" : "name", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.TagsetDescription" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.TagsetDescription", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "layer" : { + "%NAME" : "layer", + "%RANGE" : "uima.cas.String" + }, + "name" : { + "%NAME" : "name", + "%RANGE" : "uima.cas.String" + }, + "tags" : { + "%NAME" : "tags", + "%RANGE" : "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.TagDescription[]" + }, + "componentName" : { + "%NAME" : "componentName", + "%RANGE" : "uima.cas.String" + }, + "modelLocation" : { + "%NAME" : "modelLocation", + "%RANGE" : "uima.cas.String" + }, + "modelVariant" : { + "%NAME" : "modelVariant", + "%RANGE" : "uima.cas.String" + }, + "modelLanguage" : { + "%NAME" : "modelLanguage", + "%RANGE" : "uima.cas.String" + }, + "modelVersion" : { + "%NAME" : "modelVersion", + "%RANGE" : "uima.cas.String" + }, + "input" : { + "%NAME" : "input", + "%RANGE" : "uima.cas.Boolean" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.ner.type.NamedEntity" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.ner.type.NamedEntity", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "value" : { + "%NAME" : "value", + "%RANGE" : "uima.cas.String" + }, + "identifier" : { + "%NAME" : "identifier", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Lemma" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Lemma", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "value" : { + "%NAME" : "value", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Sentence" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Sentence", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "id" : { + "%NAME" : "id", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Stem" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Stem", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "value" : { + "%NAME" : "value", + "%RANGE" : "uima.cas.String" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Token" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Token", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "parent" : { + "%NAME" : "parent", + "%RANGE" : "uima.tcas.Annotation" + }, + "lemma" : { + "%NAME" : "lemma", + "%RANGE" : "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Lemma" + }, + "stem" : { + "%NAME" : "stem", + "%RANGE" : "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Stem" + }, + "pos" : { + "%NAME" : "pos", + "%RANGE" : "de.tudarmstadt.ukp.dkpro.core.api.lexmorph.type.pos.POS" + }, + "morph" : { + "%NAME" : "morph", + "%RANGE" : "de.tudarmstadt.ukp.dkpro.core.api.lexmorph.type.morph.MorphologicalFeatures" + }, + "id" : { + "%NAME" : "id", + "%RANGE" : "uima.cas.String" + }, + "form" : { + "%NAME" : "form", + "%RANGE" : "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.TokenForm" + }, + "syntacticFunction" : { + "%NAME" : "syntacticFunction", + "%RANGE" : "uima.cas.String" + }, + "order" : { + "%NAME" : "order", + "%RANGE" : "uima.cas.Integer" + } + }, + "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.TokenForm" : { + "%NAME" : "de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.TokenForm", + "%SUPER_TYPE" : "uima.tcas.Annotation", + "value" : { + "%NAME" : "value", + "%RANGE" : "uima.cas.String" + } + } + }, + "%FEATURE_STRUCTURES" : [ { + "%ID" : 1, + "%TYPE" : "de.tudarmstadt.ukp.clarin.webanno.api.type.FeatureDefinition", + "@layer" : 2, + "name" : "value", + "uiName" : "value" + }, { + "%ID" : 2, + "%TYPE" : "de.tudarmstadt.ukp.clarin.webanno.api.type.LayerDefinition", + "name" : "de.tudarmstadt.ukp.dkpro.core.api.ner.type.NamedEntity", + "uiName" : "Named entity" + }, { + "%ID" : 3, + "%TYPE" : "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.DocumentMetaData", + "@sofa" : 4, + "begin" : 0, + "end" : 1628, + "language" : "x-unspecified", + "documentTitle" : "foodista_blog_2019_08_13_northern_british_columbia_abbreviated.txt", + "documentId" : "foodista_blog_2019_08_13_northern_british_columbia_abbreviated.txt", + "documentUri" : "admin-8/foodista_blog_2019_08_13_northern_british_columbia_abbreviated.txt", + "collectionId" : "admin-8/foodista_blog_2019_08_13_northern_british_columbia_abbreviated.txt", + "documentBaseUri" : "admin-8", + "isLastSegment" : false + }, { + "%ID" : 5, + "%TYPE" : "de.tudarmstadt.ukp.dkpro.core.api.metadata.type.TagsetDescription", + "@sofa" : 4, + "begin" : 0, + "end" : 0, + "layer" : "de.tudarmstadt.ukp.dkpro.core.api.ner.type.NamedEntity", + "name" : "Named Entity tags", + "input" : false + }, { + "%ID" : 6, + "%TYPE" : "de.tudarmstadt.ukp.dkpro.core.api.ner.type.NamedEntity", + "@sofa" : 4, + "begin" : 0, + "end" : 25, + "value" : "Location" + }, { + "%ID" : 7, + "%TYPE" : "de.tudarmstadt.ukp.dkpro.core.api.ner.type.NamedEntity", + "@sofa" : 4, + "begin" : 84, + "end" : 99, + "value" : "Date" + }, { + "%ID" : 8, + "%TYPE" : "de.tudarmstadt.ukp.dkpro.core.api.ner.type.NamedEntity", + "@sofa" : 4, + "begin" : 65, + "end" : 72, + "value" : "Person" + }, { + "%ID" : 9, + "%TYPE" : 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Smithers Brewing is the logical first stop for some refreshment. +The three founders of the brewery all have local roots and love the area so much that they found it easy to leave steady jobs to start the brewery. +First up was the Last Cast Lager, a Munich Helles (German for light/bright) with a light golden color and a pleasant crisp, complex taste. +ISA, not IPA? That was a great surprise. +The Hudson Bay ISA (India Session Ale) is less hoppy and has less alcohol than the more common IPA. +Next tasting was the Strawberry Rhubarb Pie Blond, a perfect summer brew - a lovely light fruit nose and a blonde type of finish. +Last up was the Coffee Lager and, if one were so inclined, this might be an excellent starter for breakfast paired with an omelet - the right balance between coffee and lager. +My favorite was the Last Cast Lager, but I'm biased to lagers. +Smithers Brewing is part of the BC Ale Trail, and we could have happily done more tasting, but dinner time was upon us. + +... document abbreviated. + +Source: Foodista.com - The Cooking Encyclopedia Everyone Can Edit +License: http://creativecommons.org/licenses/by/3.0/ +URL: https://www.foodista.com/blog/2019/08/13/northern-british-columbia-small-town-charm-big-time-adventure diff --git 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"de.tudarmstadt.ukp.dkpro.core.api.segmentation.type.Token", + "@sofa" : 4, + "begin" : 2801, + "end" : 2838, + "order" : 0 + }, { + "%ID" : 4, + "%TYPE" : "uima.cas.Sofa", + "sofaNum" : 1, + "sofaID" : "_InitialView", + "mimeType" : "text", + "sofaString" : "Lewiston-Clarkston's New Wine District\n\nMichael and Eli...\nOctober 22, 2019\n\nIn 1864, wine grape growing started in the Lewiston and Clarkston area, but it wasn't until 2016 that the Lewis-Clark AVA (American Viticultural Area) was established.\n\nOfficially named the Lewiston-Clarkston Idaho-Washington Metropolitan area, the city of Lewiston and its little brother Clarkston are separated by the Snake River, the state line between Washington state and Idaho, and a big blue bridge.\nThe area is also a rapidly growing wine region.\n\nLindsay Creek Vineyards\n\nIn 1872, the area wineries were winning gold awards in national wine competitions. \nThen came Prohibition, which crushed the wine industry across the country. \nSlowly beginning in the 1970’s it wasn’t until 15 years ago that the area saw a true revival for growing wine grapes. \nAnd the families of Art and Doug McIntosh were a big part of that.\nThe McIntosh brothers are 4th generation farmers, with their kids making the 5th. \nThe McIntosh roots go back to 1900, growing mainly wheat and oats. \nIn 2007, they added wine grapes, and soon after opened Lindsay Creek Vineyards. \nHowever, wheat is still an important crop for the, and their company Harvest Ridge Organics proves their expertise.\n\nThe farm is located in one of the few areas in the world that can grow hard red spring wheat. \nTheir Harvest Ridge Organic, non-GMO, wheat flour is stone-ground, high in protein, and used locally in restaurants for bread, cookies, and pizza.\nYou can order their wheat and oats from their website or find it in local farmers' markets and co-ops.\nTheir website also features several recipes.\nCheck out the recipe for Chocolate Oatmeal Protein Cookies.\n\nThese cookies would pair well with the Lindsay Creek Cabernet Sauvignon, which has a nose of black cherry, and tastes of layered and well-balanced mocha, mineral, and blackberry.\nWe also tasted the award-winning 2014 Merlot, which was named the Best of Class in the Merlot category at the 2017 San Francisco Chronicle Wine Competition.\nThis Merlot has a lovely nose of cherry and vanilla, with just a hint of mocha.\nThe soft tannins and long finish would pair well with your favorite steak.\n\nSo how did wheat farmers become award-winning winemakers? What started as a hobby and love of wine, the brothers became so serious about winemaking that they both headed off to Washington State University for certificates in Enology (Art) and Viticulture (Doug).\nTheir effort certainly shows up in their wine! The tasting experience we enjoyed was greatly enhanced by the stunning views from their tasting room!\n\n... document abbreviated.\n\nSource: Foodista.com - The Cooking Encyclopedia Everyone Can Edit\nLicense: http://creativecommons.org/licenses/by/3.0/\nURL: https://www.foodista.com/blog/2019/10/22/lewiston-clarkstons-new-wine-district\n" + } ], + "%VIEWS" : { + "_InitialView" : { + "%SOFA" : 4, + "%MEMBERS" : [ 1, 2, 3, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, 238, 239, 240, 241, 242, 243, 244, 245, 246, 247, 248, 249, 250, 251, 252, 253, 254, 255, 256, 257, 258, 259, 260, 261, 262, 263, 264, 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 345, 346, 347, 348, 349, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 366, 367, 368, 369, 370, 371, 372, 373, 374, 375, 376, 377, 378, 379, 380, 381, 382, 383, 384, 385, 386, 387, 388, 389, 390, 391, 392, 393, 394, 395, 396, 397, 398, 399, 400, 401, 402, 403, 404, 405, 406, 407, 408, 409, 410, 411, 412, 413, 414, 415, 416, 417, 418, 419, 420, 421, 422, 423, 424, 425, 426, 427, 428, 429, 430, 431, 432, 433, 434, 435, 436, 437, 438, 439, 440, 441, 442, 443, 444, 445, 446, 447, 448, 449, 450, 451, 452, 453, 454, 455, 456, 457, 458, 459, 460, 461, 462, 463, 464, 465, 466, 467, 468, 469, 470, 471, 472, 473, 474, 475, 476, 477, 478, 479, 480, 481, 482, 483, 484, 485, 486, 487, 488, 489, 490, 491, 492, 493, 494, 495, 496, 497, 498, 499, 500, 501, 502, 503, 504, 505, 506, 507, 508, 509, 510, 511, 512, 513, 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, 525, 526, 527, 528, 529, 530, 531, 532, 533, 534, 535, 536, 537, 538, 539, 540, 541, 542, 543, 544, 545, 546, 547, 548, 549, 550, 551, 552, 553, 554, 555, 556, 557, 558, 559, 560, 561, 562, 563, 564, 565, 566, 567, 568, 569, 570, 571, 572, 573, 574, 575, 576, 577, 578, 579, 580, 581, 582, 583, 584, 585, 586, 587, 588, 589, 590, 591, 592, 593, 594, 595, 596, 597, 598, 599, 600, 601 ] + } + } +} \ No newline at end of file diff --git a/inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_10_22_lewiston-clarkstons-new-wine-district_abbreviated.txt b/inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_10_22_lewiston-clarkstons-new-wine-district_abbreviated.txt new file mode 100644 index 00000000000..c256353772c --- /dev/null +++ b/inception/inception-project-initializers-wikidatalinking/src/main/resources/de/tudarmstadt/ukp/inception/project/initializers/neannotation/data/foodista_blog_2019_10_22_lewiston-clarkstons-new-wine-district_abbreviated.txt @@ -0,0 +1,40 @@ +Lewiston-Clarkston's New Wine District + +Michael and Eli... +October 22, 2019 + +In 1864, wine grape growing started in the Lewiston and Clarkston area, but it wasn't until 2016 that the Lewis-Clark AVA (American Viticultural Area) was established. + +Officially named the Lewiston-Clarkston Idaho-Washington Metropolitan area, the city of Lewiston and its little brother Clarkston are separated by the Snake River, the state line between Washington state and Idaho, and a big blue bridge. +The area is also a rapidly growing wine region. + +Lindsay Creek Vineyards + +In 1872, the area wineries were winning gold awards in national wine competitions. +Then came Prohibition, which crushed the wine industry across the country. +Slowly beginning in the 1970’s it wasn’t until 15 years ago that the area saw a true revival for growing wine grapes. +And the families of Art and Doug McIntosh were a big part of that. +The McIntosh brothers are 4th generation farmers, with their kids making the 5th. +The McIntosh roots go back to 1900, growing mainly wheat and oats. +In 2007, they added wine grapes, and soon after opened Lindsay Creek Vineyards. +However, wheat is still an important crop for the, and their company Harvest Ridge Organics proves their expertise. + +The farm is located in one of the few areas in the world that can grow hard red spring wheat. +Their Harvest Ridge Organic, non-GMO, wheat flour is stone-ground, high in protein, and used locally in restaurants for bread, cookies, and pizza. +You can order their wheat and oats from their website or find it in local farmers' markets and co-ops. +Their website also features several recipes. +Check out the recipe for Chocolate Oatmeal Protein Cookies. + +These cookies would pair well with the Lindsay Creek Cabernet Sauvignon, which has a nose of black cherry, and tastes of layered and well-balanced mocha, mineral, and blackberry. +We also tasted the award-winning 2014 Merlot, which was named the Best of Class in the Merlot category at the 2017 San Francisco Chronicle Wine Competition. +This Merlot has a lovely nose of cherry and vanilla, with just a hint of mocha. +The soft tannins and long finish would pair well with your favorite steak. + +So how did wheat farmers become award-winning winemakers? What started as a hobby and love of wine, the brothers became so serious about winemaking that they both headed off to Washington State University for certificates in Enology (Art) and Viticulture (Doug). +Their effort certainly shows up in their wine! The tasting experience we enjoyed was greatly enhanced by the stunning views from their tasting room! + +... document abbreviated. + +Source: Foodista.com - The Cooking Encyclopedia Everyone Can Edit +License: http://creativecommons.org/licenses/by/3.0/ +URL: https://www.foodista.com/blog/2019/10/22/lewiston-clarkstons-new-wine-district diff --git a/inception/inception-project-initializers/src/main/java/de/tudarmstadt/ukp/clarin/webanno/project/initializers/SemPredArgLayerInitializer.java b/inception/inception-project-initializers/src/main/java/de/tudarmstadt/ukp/clarin/webanno/project/initializers/SemPredArgLayerInitializer.java index 2db59f283a4..41cf3bca618 100644 --- a/inception/inception-project-initializers/src/main/java/de/tudarmstadt/ukp/clarin/webanno/project/initializers/SemPredArgLayerInitializer.java +++ b/inception/inception-project-initializers/src/main/java/de/tudarmstadt/ukp/clarin/webanno/project/initializers/SemPredArgLayerInitializer.java @@ -100,21 +100,23 @@ public boolean alreadyApplied(Project aProject) @Override public void configure(Project aProject) throws IOException { - AnnotationLayer semArgLayer = new AnnotationLayer(SemArg.class.getName(), "SemArg", - SPAN_TYPE, aProject, true, AnchoringMode.TOKENS, OverlapMode.ANY_OVERLAP); + var semArgLayer = new AnnotationLayer(SemArg.class.getName(), "SemArg", SPAN_TYPE, aProject, + true, AnchoringMode.TOKENS, OverlapMode.ANY_OVERLAP); semArgLayer.setCrossSentence(false); annotationSchemaService.createOrUpdateLayer(semArgLayer); - AnnotationLayer semPredLayer = new AnnotationLayer(SemPred.class.getName(), "SemPred", - SPAN_TYPE, aProject, true, AnchoringMode.TOKENS, OverlapMode.ANY_OVERLAP); + var semPredLayer = new AnnotationLayer(SemPred.class.getName(), "SemPred", SPAN_TYPE, + aProject, true, AnchoringMode.TOKENS, OverlapMode.ANY_OVERLAP); semPredLayer.setCrossSentence(false); + annotationSchemaService.createOrUpdateLayer(semPredLayer); + annotationSchemaService.createFeature(new AnnotationFeature(aProject, semPredLayer, "category", "category", CAS.TYPE_NAME_STRING, "Category of the semantic predicate, e.g. the frame identifier.", null)); - AnnotationFeature semPredArgumentsFeature = new AnnotationFeature(); + var semPredArgumentsFeature = new AnnotationFeature(); semPredArgumentsFeature.setName("arguments"); semPredArgumentsFeature.setUiName("arguments"); semPredArgumentsFeature.setDescription("Arguments of the semantic predicate"); diff --git a/inception/inception-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/project/ProjectServiceImpl.java b/inception/inception-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/project/ProjectServiceImpl.java index ebd444b4cb6..08197e3e1d2 100644 --- a/inception/inception-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/project/ProjectServiceImpl.java +++ b/inception/inception-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/project/ProjectServiceImpl.java @@ -93,6 +93,7 @@ import de.tudarmstadt.ukp.clarin.webanno.security.UserDao; import de.tudarmstadt.ukp.clarin.webanno.security.model.User; import de.tudarmstadt.ukp.inception.documents.api.RepositoryProperties; +import de.tudarmstadt.ukp.inception.project.api.ProjectInitializationRequest; import de.tudarmstadt.ukp.inception.project.api.ProjectInitializer; import de.tudarmstadt.ukp.inception.project.api.ProjectService; import de.tudarmstadt.ukp.inception.project.api.event.AfterProjectCreatedEvent; @@ -878,9 +879,9 @@ public List listProjectInitializers() @Override @Transactional - public void initializeProject(Project aProject) throws IOException + public void initializeProject(ProjectInitializationRequest aRequest) throws IOException { - initializeProject(aProject, initializers.stream() // + initializeProject(aRequest, initializers.stream() // .filter(ProjectInitializer::applyByDefault) // .collect(Collectors.toList())); } @@ -917,23 +918,24 @@ private Set collectDependencies(List aIn @Override @Transactional - public void initializeProject(Project aProject, List aInitializers) + public void initializeProject(ProjectInitializationRequest aRequest, + List aInitializers) throws IOException { - Set> allInits = new HashSet<>(); - Set> applied = new HashSet<>(); - for (ProjectInitializer initializer : initializers) { + var allInits = new HashSet>(); + var applied = new HashSet>(); + for (var initializer : initializers) { allInits.add(initializer.getClass()); - if (initializer.alreadyApplied(aProject)) { + if (initializer.alreadyApplied(aRequest.getProject())) { applied.add(initializer.getClass()); } } - Deque toApply = new LinkedList<>(collectDependencies(aInitializers)); + var toApply = new LinkedList(collectDependencies(aInitializers)); Set initsDeferred = SetUtils.newIdentityHashSet(); while (!toApply.isEmpty()) { - ProjectInitializer initializer = toApply.pop(); - String initializerName = initializer.getName(); + var initializer = toApply.pop(); + var initializerName = initializer.getName(); if (applied.contains(initializer.getClass())) { log.debug("Skipping project initializer that was already applied: [{}]", @@ -955,7 +957,7 @@ public void initializeProject(Project aProject, List aInitia if (applied.containsAll(initializer.getDependencies())) { log.debug("Applying project initializer: [{}]", initializerName); - initializer.configure(aProject); + initializer.configure(aRequest); applied.add(initializer.getClass()); initsDeferred.clear(); } diff --git a/inception/inception-scheduling/src/main/java/de/tudarmstadt/ukp/inception/scheduling/Task.java b/inception/inception-scheduling/src/main/java/de/tudarmstadt/ukp/inception/scheduling/Task.java index 9b84712c41e..d2fc9fb253b 100644 --- a/inception/inception-scheduling/src/main/java/de/tudarmstadt/ukp/inception/scheduling/Task.java +++ b/inception/inception-scheduling/src/main/java/de/tudarmstadt/ukp/inception/scheduling/Task.java @@ -197,7 +197,7 @@ public void runSync() catch (Exception e) { monitor.addMessage(LogMessage.error(this, "Task failed.")); monitor.setState(TaskState.FAILED); - LOG.error("Task failed", e); + LOG.error("Task [{}] failed (trigger: [{}])", getTitle(), getTrigger(), e); } } diff --git a/inception/inception-search-mtas/src/test/java/de/tudarmstadt/ukp/inception/search/index/mtas/MtasDocumentIndexTest.java b/inception/inception-search-mtas/src/test/java/de/tudarmstadt/ukp/inception/search/index/mtas/MtasDocumentIndexTest.java index ff8758f0b06..2360510d674 100644 --- a/inception/inception-search-mtas/src/test/java/de/tudarmstadt/ukp/inception/search/index/mtas/MtasDocumentIndexTest.java +++ b/inception/inception-search-mtas/src/test/java/de/tudarmstadt/ukp/inception/search/index/mtas/MtasDocumentIndexTest.java @@ -24,7 +24,7 @@ import java.io.ByteArrayInputStream; import java.io.File; -import java.io.InputStream; +import java.lang.invoke.MethodHandles; import java.lang.reflect.Method; import java.util.HashMap; import java.util.HashSet; @@ -135,7 +135,7 @@ public class MtasDocumentIndexTest { static final String TEST_OUTPUT_FOLDER = "target/test-output/MtasDocumentIndexTest"; - private final Logger log = LoggerFactory.getLogger(getClass()); + private static final Logger LOG = LoggerFactory.getLogger(MethodHandles.lookup().lookupClass()); private @Autowired UserDao userRepository; private @Autowired ProjectService projectService; @@ -153,7 +153,7 @@ public static void setupClass() @BeforeEach public void testWatcher(TestInfo aTestInfo) { - String methodName = aTestInfo.getTestMethod().map(Method::getName).orElse(""); + var methodName = aTestInfo.getTestMethod().map(Method::getName).orElse(""); System.out.printf("\n=== %s === %s=====================\n", methodName, aTestInfo.getDisplayName()); } @@ -178,33 +178,32 @@ private void createProject(Project aProject) throws Exception private final void uploadDocument(Pair... aDocuments) throws Exception { Project project = null; - try (CasStorageSession casStorageSession = CasStorageSession.open()) { + try (var casStorageSession = CasStorageSession.open()) { for (Pair doc : aDocuments) { - log.info("Uploading document via documentService.uploadSourceDocument: {}", doc); + LOG.info("Uploading document via documentService.uploadSourceDocument: {}", doc); project = doc.getLeft().getProject(); - try (InputStream fileStream = new ByteArrayInputStream( - doc.getRight().getBytes(UTF_8))) { + try (var fileStream = new ByteArrayInputStream(doc.getRight().getBytes(UTF_8))) { documentService.uploadSourceDocument(fileStream, doc.getLeft()); } } } // Avoid the compiler complaining about project not being an effectively final variable - log.info("Waiting for uploaded documents to be indexed..."); + LOG.info("Waiting for uploaded documents to be indexed..."); Project p = project; await("Waiting for indexing process to complete") // .atMost(60, SECONDS) // .pollInterval(5, SECONDS) // .until(() -> searchService.isIndexValid(p) && searchService.getIndexProgress(p).isEmpty()); - log.info("Indexing complete!"); + LOG.info("Indexing complete!"); } private void annotateDocument(Project aProject, User aUser, SourceDocument aSourceDocument) throws Exception { - log.info("Preparing annotated document...."); + LOG.info("Preparing annotated document...."); // Manually build annotated CAS JCas jCas = JCasFactory.createJCas(); @@ -243,24 +242,24 @@ private void annotateDocument(Project aProject, User aUser, SourceDocument aSour // Write annotated CAS to annotated document try (CasStorageSession casStorageSession = CasStorageSession.open()) { - log.info("Writing annotated document using documentService.writeAnnotationCas"); + LOG.info("Writing annotated document using documentService.writeAnnotationCas"); documentService.writeAnnotationCas(jCas.getCas(), annotationDocument); } - log.info("Writing for annotated document to be indexed"); + LOG.info("Writing for annotated document to be indexed"); await("Waiting for indexing process to complete") // .atMost(60, SECONDS) // .pollInterval(5, SECONDS) // .until(() -> searchService.isIndexValid(aProject) && searchService.getIndexProgress(aProject).isEmpty()); - log.info("Indexing complete!"); + LOG.info("Indexing complete!"); } public void annotateDocumentAdvanced(Project aProject, User aUser, SourceDocument aSourceDocument) throws Exception { - log.info("Preparing annotated document...."); + LOG.info("Preparing annotated document...."); // Manually build annotated CAS JCas jCas = JCasFactory.createJCas(); @@ -309,17 +308,17 @@ public void annotateDocumentAdvanced(Project aProject, User aUser, // Write annotated CAS to annotated document try (CasStorageSession casStorageSession = CasStorageSession.open()) { - log.info("Writing annotated document using documentService.writeAnnotationCas"); + LOG.info("Writing annotated document using documentService.writeAnnotationCas"); documentService.writeAnnotationCas(jCas.getCas(), annotationDocument); } - log.info("Writing for annotated document to be indexed"); + LOG.info("Writing for annotated document to be indexed"); await("Waiting for indexing process to complete") // .atMost(60, SECONDS) // .pollInterval(5, SECONDS) // .until(() -> searchService.isIndexValid(aProject) && searchService.getIndexProgress(aProject).isEmpty()); - log.info("Indexing complete!"); + LOG.info("Indexing complete!"); } @Test @@ -485,23 +484,23 @@ public void testSimplifiedTokenTextQuery() throws Exception @Test public void testAnnotationQuery() throws Exception { - Project project = new Project("annotation-query"); + var project = new Project("annotation-query"); createProject(project); - SourceDocument sourceDocument = new SourceDocument("Annotation document", project, "text"); + var sourceDocument = new SourceDocument("Annotation document", project, "text"); - String fileContent = "The capital of Galicia is Santiago de Compostela."; + var fileContent = "The capital of Galicia is Santiago de Compostela."; uploadDocument(Pair.of(sourceDocument, fileContent)); annotateDocument(project, user, sourceDocument); - String query = ""; + var query = ""; - List results = searchService.query(user, project, query); + var results = searchService.query(user, project, query); // Test results - SearchResult expectedResult = new SearchResult(); + var expectedResult = new SearchResult(); expectedResult.setDocumentId(sourceDocument.getId()); expectedResult.setDocumentTitle("Annotation document"); // When searching for an annotation, we don't get the matching diff --git a/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/DashboardMenu.java b/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/DashboardMenu.java index 79ffdfbaf2e..76913563498 100644 --- a/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/DashboardMenu.java +++ b/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/DashboardMenu.java @@ -41,7 +41,6 @@ import de.agilecoders.wicket.core.markup.html.bootstrap.image.Icon; import de.tudarmstadt.ukp.clarin.webanno.model.Project; import de.tudarmstadt.ukp.clarin.webanno.security.UserDao; -import de.tudarmstadt.ukp.clarin.webanno.security.model.User; import de.tudarmstadt.ukp.clarin.webanno.ui.core.menu.MenuItem; import de.tudarmstadt.ukp.clarin.webanno.ui.core.menu.ProjectMenuItem; import de.tudarmstadt.ukp.clarin.webanno.ui.core.page.ProjectPageBase; @@ -73,7 +72,7 @@ public DashboardMenu(String aId, final IModel> aModel) { this(aId, aModel, true); - User user = userRepository.getCurrentUser(); + var user = userRepository.getCurrentUser(); pinState = new LambdaModelAdapter.Builder() // .getting(() -> userPrefService.loadTraitsForUser(KEY_PINNED, user).isPinned) .setting(v -> userPrefService.saveTraitsForUser(KEY_PINNED, user, new PinState(v))) diff --git a/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectInitializationState.java b/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectInitializationState.java new file mode 100644 index 00000000000..09f546e7a18 --- /dev/null +++ b/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectInitializationState.java @@ -0,0 +1,41 @@ +/* + * Licensed to the Technische Universität Darmstadt under one + * or more contributor license agreements. See the NOTICE file + * distributed with this work for additional information + * regarding copyright ownership. The Technische Universität Darmstadt + * licenses this file to you under the Apache License, Version 2.0 (the + * "License"); you may not use this file except in compliance + * with the License. + * + * http://www.apache.org/licenses/LICENSE-2.0 + * + * Unless required by applicable law or agreed to in writing, software + * distributed under the License is distributed on an "AS IS" BASIS, + * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + * See the License for the specific language governing permissions and + * limitations under the License. + */ +package de.tudarmstadt.ukp.inception.ui.core.dashboard.projectlist; + +import java.io.Serializable; + +import com.fasterxml.jackson.annotation.JsonIgnoreProperties; + +@JsonIgnoreProperties(ignoreUnknown = true) +public class ProjectInitializationState + implements Serializable +{ + private static final long serialVersionUID = -5212679894035839772L; + + private boolean includeSampleData = true; + + public boolean isIncludeSampleData() + { + return includeSampleData; + } + + public void setIncludeSampleData(boolean aIncludeSampleData) + { + includeSampleData = aIncludeSampleData; + } +} diff --git a/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectTemplateSelectionDialogPanel.html b/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectTemplateSelectionDialogPanel.html index f77100e24b7..9fabec6fa83 100644 --- a/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectTemplateSelectionDialogPanel.html +++ b/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectTemplateSelectionDialogPanel.html @@ -62,9 +62,17 @@

-
- The chosen template is only a starting point for your new project. Can you fully customize the project - after it has been created. +
+
+ + +
+
+ The chosen template is only a starting point for your new project. Can you fully customize the project + after it has been created. +
\ No newline at end of file diff --git a/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectTemplateSelectionDialogPanel.java b/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectTemplateSelectionDialogPanel.java index 7f51bd742bd..bdb18ec5fe1 100644 --- a/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectTemplateSelectionDialogPanel.java +++ b/inception/inception-ui-dashboard/src/main/java/de/tudarmstadt/ukp/inception/ui/core/dashboard/projectlist/ProjectTemplateSelectionDialogPanel.java @@ -20,6 +20,7 @@ import static de.tudarmstadt.ukp.clarin.webanno.model.PermissionLevel.ANNOTATOR; import static de.tudarmstadt.ukp.clarin.webanno.model.PermissionLevel.CURATOR; import static de.tudarmstadt.ukp.clarin.webanno.model.PermissionLevel.MANAGER; +import static de.tudarmstadt.ukp.inception.support.lambda.HtmlElementEvents.CHANGE_EVENT; import static java.lang.invoke.MethodHandles.lookup; import static java.util.Arrays.asList; import static org.slf4j.LoggerFactory.getLogger; @@ -33,11 +34,13 @@ import org.apache.wicket.feedback.IFeedback; import org.apache.wicket.markup.html.WebMarkupContainer; import org.apache.wicket.markup.html.basic.Label; +import org.apache.wicket.markup.html.form.CheckBox; import org.apache.wicket.markup.html.image.Image; import org.apache.wicket.markup.html.list.ListItem; import org.apache.wicket.markup.html.list.ListView; import org.apache.wicket.markup.html.panel.Panel; import org.apache.wicket.model.LambdaModel; +import org.apache.wicket.model.PropertyModel; import org.apache.wicket.request.mapper.parameter.PageParameters; import org.apache.wicket.request.resource.PackageResourceReference; import org.apache.wicket.spring.injection.annot.SpringBean; @@ -47,8 +50,12 @@ import de.tudarmstadt.ukp.clarin.webanno.project.initializers.QuickProjectInitializer; import de.tudarmstadt.ukp.clarin.webanno.security.UserDao; import de.tudarmstadt.ukp.clarin.webanno.ui.core.page.ProjectPageBase; +import de.tudarmstadt.ukp.inception.preferences.Key; +import de.tudarmstadt.ukp.inception.preferences.PreferencesService; +import de.tudarmstadt.ukp.inception.project.api.ProjectInitializationRequest; import de.tudarmstadt.ukp.inception.project.api.ProjectInitializer; import de.tudarmstadt.ukp.inception.project.api.ProjectService; +import de.tudarmstadt.ukp.inception.support.lambda.LambdaAjaxFormComponentUpdatingBehavior; import de.tudarmstadt.ukp.inception.support.lambda.LambdaAjaxLink; import de.tudarmstadt.ukp.inception.ui.core.dashboard.project.ProjectDashboardPage; @@ -57,6 +64,9 @@ public class ProjectTemplateSelectionDialogPanel { private static final long serialVersionUID = 2112018755924139726L; + public static final Key KEY_PROJECT_INITIALIZATION = new Key<>( + ProjectInitializationState.class, "project-overview/project-initialization"); + private static final Logger LOG = getLogger(lookup().lookupClass()); private static final PackageResourceReference NO_THUMBNAIL = new PackageResourceReference( @@ -64,13 +74,17 @@ public class ProjectTemplateSelectionDialogPanel private @SpringBean ProjectService projectService; private @SpringBean UserDao userRepository; + private @SpringBean PreferencesService preferencesService; private LambdaAjaxLink closeDialogButton; + private boolean includeSampleData; public ProjectTemplateSelectionDialogPanel(String aId) { super(aId); + loadPreferences(); + var initializers = new ListView("templates", LambdaModel.of(this::listInitializers)) { @@ -96,11 +110,33 @@ protected void populateItem(ListItem aItem) container.setOutputMarkupId(true); queue(container); + var includeSampledataSwitch = new CheckBox("includeSampleData", + PropertyModel.of(this, "includeSampleData")); + includeSampledataSwitch.setOutputMarkupId(true); + includeSampledataSwitch.add(new LambdaAjaxFormComponentUpdatingBehavior(CHANGE_EVENT, + this::actionUpdatePreferences)); + queue(includeSampledataSwitch); + closeDialogButton = new LambdaAjaxLink("closeDialog", this::actionCancel); closeDialogButton.setOutputMarkupId(true); queue(closeDialogButton); } + private void loadPreferences() + { + var user = userRepository.getCurrentUser(); + var prefs = preferencesService.loadTraitsForUser(KEY_PROJECT_INITIALIZATION, user); + includeSampleData = prefs.isIncludeSampleData(); + } + + private void actionUpdatePreferences(AjaxRequestTarget aTarget) + { + var user = userRepository.getCurrentUser(); + var prefs = preferencesService.loadTraitsForUser(KEY_PROJECT_INITIALIZATION, user); + prefs.setIncludeSampleData(includeSampleData); + preferencesService.saveTraitsForUser(KEY_PROJECT_INITIALIZATION, user, prefs); + } + private List listInitializers() { return projectService.listProjectInitializers().stream() @@ -121,7 +157,13 @@ private void actionCreateProject(AjaxRequestTarget aTarget, ProjectInitializer a project.setName(user.getUsername() + " - New project"); projectService.createProject(project); projectService.assignRole(project, user, ANNOTATOR, CURATOR, MANAGER); - projectService.initializeProject(project, asList(aInitializer)); + + var request = ProjectInitializationRequest.builder() // + .withProject(project) // + .withIncludeSampleData(includeSampleData) // + .build(); + + projectService.initializeProject(request, asList(aInitializer)); var pageParameters = new PageParameters(); ProjectPageBase.setProjectPageParameter(pageParameters, project); diff --git a/inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/detail/ProjectDetailPanel.java b/inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/detail/ProjectDetailPanel.java index d9597a342a6..8e483b0797a 100644 --- a/inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/detail/ProjectDetailPanel.java +++ b/inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/detail/ProjectDetailPanel.java @@ -54,7 +54,6 @@ import de.tudarmstadt.ukp.clarin.webanno.model.Project; import de.tudarmstadt.ukp.clarin.webanno.security.UserDao; -import de.tudarmstadt.ukp.clarin.webanno.security.model.User; import de.tudarmstadt.ukp.clarin.webanno.ui.core.page.ProjectPageBase; import de.tudarmstadt.ukp.inception.project.api.ProjectService; import de.tudarmstadt.ukp.inception.schema.api.AnnotationSchemaService; @@ -168,7 +167,7 @@ private void actionSave(AjaxRequestTarget aTarget, Form aForm) boolean isNewProject = isNull(project.getId()); if (isNewProject) { try { - User user = userRepository.getCurrentUser(); + var user = userRepository.getCurrentUser(); projectService.createProject(project); projectService.assignRole(project, user, ANNOTATOR, CURATOR, MANAGER); projectService.initializeProject(project); diff --git a/inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/layers/ProjectLayersPanel.java b/inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/layers/ProjectLayersPanel.java index 4298c5feb4f..9337410c879 100644 --- a/inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/layers/ProjectLayersPanel.java +++ b/inception/inception-ui-project/src/main/java/de/tudarmstadt/ukp/clarin/webanno/ui/project/layers/ProjectLayersPanel.java @@ -86,6 +86,7 @@ import de.tudarmstadt.ukp.inception.bootstrap.BootstrapFileInputField; import de.tudarmstadt.ukp.inception.bootstrap.BootstrapModalDialog; import de.tudarmstadt.ukp.inception.export.LayerImportExportUtils; +import de.tudarmstadt.ukp.inception.project.api.ProjectInitializationRequest; import de.tudarmstadt.ukp.inception.project.api.ProjectService; import de.tudarmstadt.ukp.inception.schema.api.AnnotationSchemaService; import de.tudarmstadt.ukp.inception.schema.api.config.AnnotationSchemaProperties; @@ -289,7 +290,9 @@ public void onLayerTemplateSelected(LayerTemplateSelectedEvent aEvent) target.add(layerSelection); target.add(addButton); target.addChildren(getPage(), IFeedback.class); - projectService.initializeProject(getModelObject(), asList(initializer)); + var request = ProjectInitializationRequest.builder().withProject(getModelObject()) + .build(); + projectService.initializeProject(request, asList(initializer)); info("Applying project initializer [" + initializer.getName() + "]"); } catch (Exception e) {