No issue: Try to get build work on Windows

- After enabling method security, remove pointles preauthorize annotations
- Use a TempDir for a test
- Shut down KB after test method
- Try making PDF text extraction tests work on Windows
- Use in-memory DB for an integration test so we don't have issues with deleting DB files after shutdown on Windows
- Try shutting down log4j after test so the temporary folder can be deleted in the end on Windwos

inception/inception-app-webapp/pom.xml

@@ -898,6 +898,7 @@
                uber-JAR and we get ClassNotFoundExceptions at runtime.
                -->
               <ignoredDependency>com.nimbusds:nimbus-jose-jwt</ignoredDependency>
+              <ignoredDependency>org.apache.logging.log4j:log4j-api</ignoredDependency>
               <!-- 
                 - Detection of this dependency is flickering. We need it for a menu-item. So
                 - for the moment, completely ignore it in the dependency checking.

inception/inception-app-webapp/src/test/java/de/tudarmstadt/ukp/inception/InceptionRemoteApiJwtIntegrationTest.java

@@ -35,6 +35,7 @@
 import java.util.Map;
 import java.util.UUID;
 
+import org.apache.logging.log4j.LogManager;
 import org.junit.jupiter.api.AfterAll;
 import org.junit.jupiter.api.BeforeAll;
 import org.junit.jupiter.api.Tag;
@@ -77,6 +78,7 @@ static void setup()
         var issuerUrl = oauth2Server.url(ISSUER_ID).toString();
 
         setProperty("java.awt.headless", "true");
+        setProperty("database.url", "jdbc:hsqldb:mem:testdb");
         setProperty("inception.home", appHome.toString());
         setProperty("remote-api.enabled", "true");
         setProperty("remote-api.oauth2.enabled", "true");
@@ -110,6 +112,7 @@ static void teardown()
         }
         context.close();
         oauth2Server.shutdown();
+        LogManager.shutdown();
     }
 
     @Test

inception/inception-curation/pom.xml

@@ -114,10 +114,6 @@
       <groupId>org.springframework</groupId>
       <artifactId>spring-core</artifactId>
     </dependency>
-    <dependency>
-      <groupId>org.springframework.security</groupId>
-      <artifactId>spring-security-core</artifactId>
-    </dependency>
     <dependency>
       <groupId>org.springframework.boot</groupId>
       <artifactId>spring-boot-autoconfigure</artifactId>

inception/inception-curation/src/main/java/de/tudarmstadt/ukp/inception/curation/service/CurationDocumentService.java

@@ -23,7 +23,6 @@
 
 import org.apache.uima.UIMAException;
 import org.apache.uima.cas.CAS;
-import org.springframework.security.access.prepost.PreAuthorize;
 
 import de.tudarmstadt.ukp.clarin.webanno.api.casstorage.ConcurentCasModificationException;
 import de.tudarmstadt.ukp.clarin.webanno.model.AnnotationDocument;
@@ -50,7 +49,6 @@ public interface CurationDocumentService
      * @throws IOException
      *             if an I/O error occurs.
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER')")
     void writeCurationCas(CAS aCas, SourceDocument document, boolean aUpdateTimestamp)
         throws IOException;
 

inception/inception-diam/src/test/java/de/tudarmstadt/ukp/inception/diam/service/DiamWebsocketController_ViewportRoutingTest.java

@@ -219,22 +219,18 @@ public void tearDown()
     @Test
     public void thatViewportBasedMessageRoutingWorks() throws Exception
     {
-        CountDownLatch subscriptionDone = new CountDownLatch(2);
-        CountDownLatch initDone = new CountDownLatch(2);
+        var subscriptionDone = new CountDownLatch(2);
+        var initDone = new CountDownLatch(2);
 
-        ViewportDefinition vpd1 = new ViewportDefinition(testAnnotationDocument, 10, 20,
-                FORMAT_LEGACY);
-        ViewportDefinition vpd2 = new ViewportDefinition(testAnnotationDocument, 30, 40,
-                FORMAT_LEGACY);
+        var vpd1 = new ViewportDefinition(testAnnotationDocument, 10, 20, FORMAT_LEGACY);
+        var vpd2 = new ViewportDefinition(testAnnotationDocument, 30, 40, FORMAT_LEGACY);
 
         var sessionHandler1 = new SessionHandler(subscriptionDone, initDone, vpd1);
         var sessionHandler2 = new SessionHandler(subscriptionDone, initDone, vpd2);
 
         // try {
-        StompSession session1 = stompClient.connect(websocketUrl, sessionHandler1).get(1000,
-                SECONDS);
-        StompSession session2 = stompClient.connect(websocketUrl, sessionHandler2).get(1000,
-                SECONDS);
+        var session1 = stompClient.connect(websocketUrl, sessionHandler1).get(1000, SECONDS);
+        var session2 = stompClient.connect(websocketUrl, sessionHandler2).get(1000, SECONDS);
         // }
         // catch (Exception e) {
         // Thread.sleep(Duration.of(3, ChronoUnit.HOURS).toMillis());
@@ -341,7 +337,7 @@ public ApplicationContextProvider applicationContextProvider()
         public DaoAuthenticationProvider internalAuthenticationProvider(PasswordEncoder aEncoder,
                 @Lazy UserDetailsManager aUserDetailsManager)
         {
-            DaoAuthenticationProvider authProvider = new InceptionDaoAuthenticationProvider();
+            var authProvider = new InceptionDaoAuthenticationProvider();
             authProvider.setUserDetailsService(aUserDetailsManager);
             authProvider.setPasswordEncoder(aEncoder);
             return authProvider;
@@ -362,7 +358,7 @@ public String getId()
                 @Override
                 public void render(VDocument aResponse, RenderRequest aRequest)
                 {
-                    AnnotationLayer layer = new AnnotationLayer();
+                    var layer = new AnnotationLayer();
                     layer.setId(1l);
                     aResponse.add(
                             new VSpan(layer, new VID(1), new VRange(aRequest.getWindowBeginOffset(),

inception/inception-documents-api/src/main/java/de/tudarmstadt/ukp/inception/documents/api/DocumentService.java

@@ -32,7 +32,6 @@
 import org.apache.uima.cas.CAS;
 import org.apache.uima.resource.metadata.TypeSystemDescription;
 import org.apache.wicket.validation.ValidationError;
-import org.springframework.security.access.prepost.PreAuthorize;
 
 import de.tudarmstadt.ukp.clarin.webanno.api.casstorage.CasAccessMode;
 import de.tudarmstadt.ukp.clarin.webanno.api.casstorage.CasUpgradeMode;
@@ -71,7 +70,6 @@ public interface DocumentService
      *            {@link SourceDocument} to be created
      * @return the source document
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER','ROLE_REMOTE')")
     SourceDocument createSourceDocument(SourceDocument document);
 
     /**
@@ -148,7 +146,6 @@ List<SourceDocument> listSourceDocumentsInState(Project aProject,
      * @throws IOException
      *             If the source document searched for deletion is not available
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER', 'ROLE_REMOTE')")
     void removeSourceDocument(SourceDocument document) throws IOException;
 
     /**
@@ -164,7 +161,6 @@ List<SourceDocument> listSourceDocumentsInState(Project aProject,
      * @throws UIMAException
      *             if a conversion error occurs.
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER','ROLE_REMOTE')")
     void uploadSourceDocument(InputStream file, SourceDocument document)
         throws IOException, UIMAException;
 
@@ -184,7 +180,6 @@ void uploadSourceDocument(InputStream file, SourceDocument document)
      * @throws UIMAException
      *             if a conversion error occurs.
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER','ROLE_REMOTE')")
     void uploadSourceDocument(InputStream file, SourceDocument document,
             TypeSystemDescription aFullProjectTypeSystem)
         throws IOException, UIMAException;
@@ -208,7 +203,6 @@ SourceDocumentState setSourceDocumentState(SourceDocument aDocument,
      *            and id of {@link User}
      * @return the annotation document.
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER')")
     AnnotationDocument createAnnotationDocument(AnnotationDocument annotationDocument);
 
     /**
@@ -224,7 +218,6 @@ SourceDocumentState setSourceDocumentState(SourceDocument aDocument,
      * @throws IOException
      *             if an I/O error occurs.
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER')")
     void writeAnnotationCas(CAS aCas, AnnotationDocument aAnnotationDocument,
             boolean aExplicitAnnotatorUserAction)
         throws IOException;
@@ -244,7 +237,6 @@ void writeAnnotationCas(CAS aCas, AnnotationDocument aAnnotationDocument,
      * @throws IOException
      *             if an I/O error occurs.
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER')")
     void writeAnnotationCas(CAS aCas, SourceDocument aDocument, User aUser,
             boolean aExplicitAnnotatorUserAction)
         throws IOException;
@@ -282,7 +274,6 @@ void writeAnnotationCas(CAS aCas, SourceDocument aDocument, String aUser,
      * @throws IOException
      *             if an I/O error occurs.
      */
-    @PreAuthorize("hasAnyRole('ROLE_ADMIN','ROLE_USER')")
     void resetAnnotationCas(SourceDocument aDocument, User aUser,
             AnnotationDocumentStateChangeFlag... aFlags)
         throws UIMAException, IOException;
@@ -528,10 +519,11 @@ CAS createOrReadInitialCas(SourceDocument aDocument, CasUpgradeMode aUpgradeMode
      * @param document
      *            The {@link SourceDocument} to be examined
      * @return the file size of the initial CAS for the given source document.
-     * @throws IOException accessing the file.
+     * @throws IOException
+     *             accessing the file.
      */
     Optional<Long> getInitialCasFileSize(SourceDocument document) throws IOException;
-    
+
     /**
      * List all the {@link AnnotationDocument annotation documents} in a given project.
      * <p>

inception/inception-documents/src/main/java/de/tudarmstadt/ukp/inception/documents/DocumentServiceImpl.java

@@ -219,7 +219,7 @@ public void exportSourceDocuments(OutputStream os, List<SourceDocument> selected
     {
         try (var zos = new ZipOutputStream(os)) {
             for (var doc : selectedDocuments) {
-                try (InputStream dis = new FileInputStream(getSourceDocumentFile(doc))) {
+                try (var dis = new FileInputStream(getSourceDocumentFile(doc))) {
                     zos.putNextEntry(new ZipEntry(doc.getName()));
                     IOUtils.copyLarge(dis, zos);
                 }
@@ -273,8 +273,9 @@ public boolean existsAnnotationDocument(SourceDocument aDocument, String aUserna
                             "FROM AnnotationDocument WHERE project = :project "
                                     + " AND document = :document AND user = :user",
                             AnnotationDocument.class)
-                    .setParameter("project", aDocument.getProject())
-                    .setParameter("document", aDocument).setParameter("user", aUsername)
+                    .setParameter("project", aDocument.getProject()) //
+                    .setParameter("document", aDocument) //
+                    .setParameter("user", aUsername) //
                     .getSingleResult();
             return true;
         }
@@ -299,9 +300,8 @@ public AnnotationDocument createAnnotationDocument(AnnotationDocument aAnnotatio
 
             return aAnnotationDocument;
         }
-        else {
-            return entityManager.merge(aAnnotationDocument);
-        }
+
+        return entityManager.merge(aAnnotationDocument);
     }
 
     // NO TRANSACTION REQUIRED - This does not do any should not do a database access, so we do not
@@ -332,7 +332,8 @@ public boolean existsSourceDocument(Project aProject)
         var query = cb.createQuery(Long.class);
         var doc = query.from(SourceDocument.class);
 
-        query.select(cb.count(doc)).where(cb.equal(doc.get(SourceDocument_.project), aProject));
+        query.select(cb.count(doc)) //
+                .where(cb.equal(doc.get(SourceDocument_.project), aProject));
 
         return entityManager.createQuery(query).getSingleResult() > 0;
     }
@@ -344,12 +345,12 @@ public boolean existsSourceDocument(Project aProject, String aFileName)
         Validate.notNull(aProject, "Project must be specified");
         Validate.notBlank(aFileName, "File name must be specified");
 
-        String query = String.join("\n", //
+        var query = String.join("\n", //
                 "SELECT COUNT(*)", //
                 "FROM SourceDocument", //
                 "WHERE project = :project AND name =:name ");
 
-        long count = entityManager.createQuery(query, Long.class) //
+        var count = entityManager.createQuery(query, Long.class) //
                 .setParameter("project", aProject) //
                 .setParameter("name", aFileName) //
                 .getSingleResult();
@@ -383,10 +384,10 @@ public List<AnnotationDocument> createOrGetAnnotationDocuments(SourceDocument aD
             return emptyList();
         }
 
-        Set<String> usersWithoutAnnotationDocument = new HashSet<>();
+        var usersWithoutAnnotationDocument = new HashSet<String>();
         aUsers.forEach(user -> usersWithoutAnnotationDocument.add(user.getUsername()));
 
-        List<AnnotationDocument> annDocs = listAnnotationDocuments(aDocument);
+        var annDocs = listAnnotationDocuments(aDocument);
         annDocs.stream().forEach(annDoc -> usersWithoutAnnotationDocument.remove(annDoc.getUser()));
 
         for (var user : usersWithoutAnnotationDocument) {
@@ -410,11 +411,11 @@ public List<AnnotationDocument> createOrGetAnnotationDocuments(
             return emptyList();
         }
 
-        Project project = aDocuments.iterator().next().getProject();
-        Set<SourceDocument> sourceDocsWithoutAnnotationDocument = new HashSet<>();
+        var project = aDocuments.iterator().next().getProject();
+        var sourceDocsWithoutAnnotationDocument = new HashSet<SourceDocument>();
         aDocuments.forEach(srcDoc -> sourceDocsWithoutAnnotationDocument.add(srcDoc));
 
-        List<AnnotationDocument> annDocs = listAnnotationDocuments(project, aUser);
+        var annDocs = listAnnotationDocuments(project, aUser);
         annDocs.stream().forEach(
                 annDoc -> sourceDocsWithoutAnnotationDocument.remove(annDoc.getDocument()));
 
@@ -541,13 +542,13 @@ public boolean existsFinishedAnnotation(SourceDocument aDocument)
     {
         Validate.notNull(aDocument, "Source document must be specified");
 
-        String query = join("\n", //
+        var query = join("\n", //
                 "SELECT COUNT(*) ", //
                 "FROM AnnotationDocument ", //
                 "WHERE document = :document AND state = :state");
 
-        long count = entityManager.createQuery(query, Long.class)
-                .setParameter("document", aDocument)
+        var count = entityManager.createQuery(query, Long.class) //
+                .setParameter("document", aDocument) //
                 .setParameter("state", AnnotationDocumentState.FINISHED) //
                 .getSingleResult();
 
@@ -560,12 +561,12 @@ public boolean existsFinishedAnnotation(Project aProject)
     {
         Validate.notNull(aProject, "Project must be specified");
 
-        String query = join("\n", //
+        var query = join("\n", //
                 "SELECT COUNT(*) ", //
                 "FROM AnnotationDocument ", //
                 "WHERE document.project = :project AND state = :state");
 
-        long count = entityManager.createQuery(query, Long.class) //
+        var count = entityManager.createQuery(query, Long.class) //
                 .setParameter("project", aProject) //
                 .setParameter("state", AnnotationDocumentState.FINISHED) //
                 .getSingleResult();
@@ -579,7 +580,7 @@ public List<AnnotationDocument> listFinishedAnnotationDocuments(Project aProject
         Validate.notNull(aProject, "Project must be specified");
 
         // Get all annotators in the project
-        List<String> users = getAllAnnotators(aProject);
+        var users = getAllAnnotators(aProject);
 
         // Bail out already. HQL doesn't seem to like queries with an empty
         // parameter right of "in"
@@ -606,7 +607,7 @@ public List<AnnotationDocument> listFinishedAnnotationDocuments(SourceDocument a
         Validate.notNull(aDocument, "Source document must be specified");
 
         // Get all annotators in the project
-        List<String> users = getAllAnnotators(aDocument.getProject());
+        var users = getAllAnnotators(aDocument.getProject());
         // Bail out already. HQL doesn't seem to like queries with an empty parameter right of "in"
         if (users.isEmpty()) {
             return new ArrayList<>();
@@ -647,7 +648,7 @@ public List<SourceDocument> listSourceDocumentsInState(Project aProject,
         Validate.notNull(aStates, "States must be specified");
         Validate.notEmpty(aStates, "States must not be an empty list");
 
-        String query = String.join("\n", //
+        var query = String.join("\n", //
                 "FROM SourceDocument", //
                 "WHERE project =:project", //
                 "AND state IN (:states)", //