.travis.yml

language: ruby

services:
  - docker

jobs:
  include:
    - stage: build-cutadapt
      script:
        - docker build -t cnag/cutadapt:1.18 -f containers/cutadapt/cutadapt-Dockerfile .
      deploy:
        provider: script
        script: bash scripts/docker_push.sh cnag/cutadapt:1.18
        on:
          branch: containers
    - stage: build-bwa
      script:
        - docker build -t cnag/bwa:0.7.17 -f containers/bwa/bwa-Dockerfile .
      deploy:
        provider: script
        script: bash scripts/docker_push.sh cnag/bwa:0.7.17
        on:
          branch: containers
    - stage: build-picard
      script:
        - docker build -t cnag/picard:2.18.25 -f containers/picard/picard-Dockerfile .
      deploy:
        provider: script
        script: bash scripts/docker_push.sh cnag/picard:2.18.25
        on:
          branch: containers
    - stage: build-gatk
      script:
        - docker build -t cnag/gatk:3.6-0 -f containers/gatk/gatk3-Dockerfile .
      deploy:
        provider: script
        script: bash scripts/docker_push.sh cnag/gatk:3.6-0
        on:
          branch: containers
    - stage: build-fastqc
      script:
        - docker build -t cnag/fastqc:0.11.8 -f containers/fastqc/fastqc-Dockerfile .
      deploy:
        provider: script
        script: bash scripts/docker_push.sh cnag/fastqc:0.11.8
        on:
          branch: containers
    - stage: build-sambamba
      script:
        - docker build -t cnag/sambamba:0.6.8 -f containers/sambamba/sambamba-Dockerfile .
      deploy:
        provider: script
        script: bash scripts/docker_push.sh cnag/sambamba:0.6.8
        on:
          branch: containers