From 35f2b9decb5cac0aa736276894a63f58db47495a Mon Sep 17 00:00:00 2001 From: Phillip Cloud <417981+cpcloud@users.noreply.github.com> Date: Mon, 16 Dec 2024 12:36:38 -0500 Subject: [PATCH] feat(python): support python 3.13 (#10582) Add support for Python 3.13. --- .github/workflows/nix-skip-helper.yml | 14 +- .github/workflows/nix.yml | 16 +- flake.nix | 9 +- .../sql/compilers/bigquery/udf/core.py | 2 +- nix/overlay.nix | 11 +- nix/pyproject-overrides.nix | 21 +- nix/quarto/default.nix | 4 +- requirements-dev.txt | 8 +- uv.lock | 281 ++++++++++-------- 9 files changed, 220 insertions(+), 146 deletions(-) diff --git a/.github/workflows/nix-skip-helper.yml b/.github/workflows/nix-skip-helper.yml index 46ea95fee7d3..5b8e90b1e63b 100644 --- a/.github/workflows/nix-skip-helper.yml +++ b/.github/workflows/nix-skip-helper.yml @@ -32,14 +32,16 @@ jobs: matrix: os: - ubuntu-latest # x86_64-linux + - ubuntu-arm64-24.04 # aarch64-linux + - macos-13 # x86_64-darwin + - macos-14 # aarch64-darwin python-version: - - "3.10" - - "3.11" - "3.12" + - "3.13" include: - - os: ubuntu-arm64-24.04 - python-version: "3.12" - - os: macos-14 - python-version: "3.12" + - os: ubuntu-latest + python-version: "3.10" + - os: ubuntu-latest + python-version: "3.11" steps: - run: echo "No build required" diff --git a/.github/workflows/nix.yml b/.github/workflows/nix.yml index d03fc0177f1b..7b70b2ed7c7f 100644 --- a/.github/workflows/nix.yml +++ b/.github/workflows/nix.yml @@ -34,15 +34,17 @@ jobs: matrix: os: - ubuntu-latest # x86_64-linux + - ubuntu-arm64-24.04 # aarch64-linux + - macos-13 # x86_64-darwin + - macos-14 # aarch64-darwin python-version: - - "3.10" - - "3.11" - "3.12" + - "3.13" include: - - os: ubuntu-arm64-24.04 # aarch64-linux - python-version: "3.12" - - os: macos-14 # aarch64-darwin - python-version: "3.12" + - os: ubuntu-latest + python-version: "3.10" + - os: ubuntu-latest + python-version: "3.11" steps: - name: checkout uses: actions/checkout@v4 @@ -76,8 +78,6 @@ jobs: nix build ".#ibis${version//./}.passthru.tests.pytest" --fallback --keep-going --print-build-logs - name: nix build devShell - # TODO: dev shell doesn't yet build on macos-14 (aarch64-darwin) - continue-on-error: ${{ matrix.os == 'macos-14' }} run: | set -euo pipefail diff --git a/flake.nix b/flake.nix index b14f1b4d30b6..a9fb9cb1030c 100644 --- a/flake.nix +++ b/flake.nix @@ -148,15 +148,16 @@ ''; GDAL_DATA = "${pkgs.gdal}/share/gdal"; + PROJ_DATA = "${pkgs.proj}/share/proj"; __darwinAllowLocalNetworking = true; }; in rec { packages = { - default = packages.ibis312; + default = packages.ibis313; - inherit (pkgs) ibis310 ibis311 ibis312 + inherit (pkgs) ibis310 ibis311 ibis312 ibis313 update-lock-files check-release-notes-spelling; }; @@ -164,14 +165,16 @@ ibis310-pytest = pkgs.ibis310.passthru.tests.pytest; ibis311-pytest = pkgs.ibis311.passthru.tests.pytest; ibis312-pytest = pkgs.ibis312.passthru.tests.pytest; + ibis313-pytest = pkgs.ibis313.passthru.tests.pytest; }; devShells = rec { ibis310 = mkDevShell pkgs.ibisDevEnv310; ibis311 = mkDevShell pkgs.ibisDevEnv311; ibis312 = mkDevShell pkgs.ibisDevEnv312; + ibis313 = mkDevShell pkgs.ibisDevEnv313; - default = ibis312; + default = ibis313; preCommit = pkgs.mkShell { name = "preCommit"; diff --git a/ibis/backends/sql/compilers/bigquery/udf/core.py b/ibis/backends/sql/compilers/bigquery/udf/core.py index 9cffb420840a..e4862c916418 100644 --- a/ibis/backends/sql/compilers/bigquery/udf/core.py +++ b/ibis/backends/sql/compilers/bigquery/udf/core.py @@ -85,7 +85,7 @@ def rewrite_len(node): return ast.Attribute(value=node.args[0], attr="length", ctx=ast.Load()) -@rewrite.register(ast.Call(func=ast.Attribute(attr="append"))) +@rewrite.register(ast.Call(func=ast.Attribute(attr="append", value=None))) def rewrite_append(node): return ast.Call( func=ast.Attribute(value=node.func.value, attr="push", ctx=ast.Load()), diff --git a/nix/overlay.nix b/nix/overlay.nix index 8327ffa25623..65ede9bf6aee 100644 --- a/nix/overlay.nix +++ b/nix/overlay.nix @@ -53,6 +53,11 @@ let # Use base package set from pyproject.nix builders (pkgs.callPackage pyproject-nix.build.packages { inherit python; + stdenv = pkgs.stdenv.override { + targetPlatform = pkgs.stdenv.targetPlatform // { + darwinSdkVersion = "12.0"; + }; + }; }).overrideScope (lib.composeManyExtensions ([ pyproject-build-systems.overlays.default @@ -96,10 +101,12 @@ in ibis310 = mkEnv pkgs.python310; ibis311 = mkEnv pkgs.python311; ibis312 = mkEnv pkgs.python312; + ibis313 = mkEnv pkgs.python313; ibisDevEnv310 = mkDevEnv pkgs.python310; ibisDevEnv311 = mkDevEnv pkgs.python311; ibisDevEnv312 = mkDevEnv pkgs.python312; + ibisDevEnv313 = mkDevEnv pkgs.python313; ibisSmallDevEnv = mkEnv' { @@ -108,7 +115,7 @@ in }; editable = false; } - pkgs.python312; + pkgs.python313; duckdb = super.duckdb.overrideAttrs ( _: lib.optionalAttrs (stdenv.isAarch64 && stdenv.isLinux) { @@ -149,7 +156,7 @@ in gen-examples = pkgs.writeShellApplication { name = "gen-examples"; runtimeInputs = [ - pkgs.ibisDevEnv312 + pkgs.ibisDevEnv313 (pkgs.rWrapper.override { packages = with pkgs.rPackages; [ Lahman diff --git a/nix/pyproject-overrides.nix b/nix/pyproject-overrides.nix index d5d902e26dd6..c9c8bfffc156 100644 --- a/nix/pyproject-overrides.nix +++ b/nix/pyproject-overrides.nix @@ -30,6 +30,9 @@ let toolz.setuptools = [ ]; typing-extensions.flit-core = [ ]; debugpy.setuptools = [ ]; + google-crc32c.setuptools = [ ]; + lz4.setuptools = [ ]; + snowflake-connector-python.setuptools = [ ]; } // lib.optionalAttrs stdenv.hostPlatform.isDarwin { duckdb = { setuptools = [ ]; @@ -39,15 +42,23 @@ let }; in (lib.optionalAttrs stdenv.hostPlatform.isDarwin { - pyarrow = prev.pyarrow.overrideAttrs (attrs: { + pyproj = prev.pyproj.overrideAttrs (attrs: { nativeBuildInputs = attrs.nativeBuildInputs or [ ] ++ [ final.setuptools - final.setuptools-scm final.cython - final.numpy - pkgs.cmake - pkgs.arrow-cpp + pkgs.proj ]; + PROJ_DIR = "${lib.getBin pkgs.proj}"; + PROJ_INCDIR = "${lib.getDev pkgs.proj}"; + }); + + psygnal = prev.psygnal.overrideAttrs (_: { + src = pkgs.fetchFromGitHub { + owner = "pyapp-kit"; + repo = prev.psygnal.pname; + rev = "refs/tags/v${prev.psygnal.version}"; + hash = "sha256-eGJWtmw2Ps3jII4T8E6s3djzxfqcSdyPemvejal0cn4="; + }; }); }) // lib.mapAttrs (name: spec: addBuildSystems prev.${name} spec) buildSystemOverrides // { mysqlclient = prev.mysqlclient.overrideAttrs (attrs: { diff --git a/nix/quarto/default.nix b/nix/quarto/default.nix index 607946e8717f..a0ccfa3998df 100644 --- a/nix/quarto/default.nix +++ b/nix/quarto/default.nix @@ -15,11 +15,13 @@ let "x86_64-linux" = "linux-amd64"; "aarch64-linux" = "linux-arm64"; "aarch64-darwin" = "macos"; + "x86_64-darwin" = "macos"; }; shas = { "x86_64-linux" = "sha256-mVoFBQJJHGn5ZbwOtamshEQl9FzmRVEBye3bBXFUlUI="; "aarch64-linux" = "sha256-TNik4+OdDqGwArw9wkrq4wNHt6tGgYo32V9KNPSsPWo="; "aarch64-darwin" = "sha256-fjcmyVyPSHyHBICjpweuCnGtMAAlPNNzBMHEk+2emBA="; + "x86_64-darwin" = 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