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ibis-backends.yml
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name: Backends
on:
push:
# Skip the backend suite if all changes are docs
paths-ignore:
- "docs/**"
- "**/*.md"
- "**/*.qmd"
- "codecov.yml"
- ".envrc"
- ".codespellrc"
branches:
- main
- "*.x.x"
- the-epic-split
pull_request:
# Skip the backend suite if all changes are docs
paths-ignore:
- "docs/**"
- "**/*.md"
- "**/*.qmd"
- "codecov.yml"
- ".envrc"
- ".codespellrc"
branches:
- main
- "*.x.x"
- the-epic-split
merge_group:
permissions:
# this allows extractions/setup-just to list releases for `just` at a higher
# rate limit while restricting GITHUB_TOKEN permissions elsewhere
contents: read
concurrency:
group: ${{ github.repository }}-${{ github.head_ref || github.sha }}-${{ github.workflow }}
cancel-in-progress: true
env:
FORCE_COLOR: "1"
ODBCSYSINI: "${{ github.workspace }}/ci/odbc"
SQLALCHEMY_WARN_20: "1"
HYPOTHESIS_PROFILE: "ci"
jobs:
test_backends:
name: ${{ matrix.backend.title }} ${{ matrix.os }} python-${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os:
- ubuntu-latest
- windows-latest
python-version:
- "3.9"
- "3.11"
backend:
- name: duckdb
title: DuckDB
extras:
- duckdb
- deltalake
- geospatial
- examples
- decompiler
additional_deps:
- torch
- name: clickhouse
title: ClickHouse
services:
- clickhouse
extras:
- clickhouse
- examples
# - name: dask
# title: Dask
# extras:
# - dask
- name: pandas
title: Pandas
extras:
- pandas
# - name: sqlite
# title: SQLite
# extras:
# - sqlite
- name: datafusion
title: Datafusion
extras:
- datafusion
- name: polars
title: Polars
extras:
- polars
- deltalake
- name: mysql
title: MySQL
services:
- mysql
extras:
- mysql
- geospatial
sys-deps:
- libgeos-dev
- name: postgres
title: PostgreSQL
extras:
- postgres
- geospatial
services:
- postgres
sys-deps:
- libgeos-dev
- name: postgres
title: PostgreSQL + Torch
extras:
- postgres
- geospatial
additional_deps:
- torch
services:
- postgres
sys-deps:
- libgeos-dev
- name: impala
title: Impala
extras:
- impala
services:
- impala
- kudu
sys-deps:
- cmake
- ninja-build
# - name: mssql
# title: MS SQL Server
# extras:
# - mssql
# services:
# - mssql
# sys-deps:
# - freetds-dev
# - unixodbc-dev
# - tdsodbc
- name: trino
title: Trino
extras:
- trino
services:
- trino
- name: druid
title: Druid
extras:
- druid
services:
- druid
# - name: oracle
# title: Oracle
# serial: true
# extras:
# - oracle
# services:
# - oracle
# - name: exasol
# title: Exasol
# serial: true
# extras:
# - exasol
# services:
# - exasol
# - name: flink
# title: Flink
# serial: true
# extras:
# - flink
# additional_deps:
# - apache-flink
# - pytest-split
# services:
# - flink
# - name: risingwave
# title: Risingwave
# services:
# - risingwave
# extras:
# - risingwave
exclude:
- os: windows-latest
backend:
name: mysql
title: MySQL
extras:
- mysql
- geospatial
services:
- mysql
sys-deps:
- libgeos-dev
- os: windows-latest
backend:
name: clickhouse
title: ClickHouse
extras:
- clickhouse
- examples
services:
- clickhouse
- os: windows-latest
backend:
name: postgres
title: PostgreSQL
extras:
- postgres
- geospatial
services:
- postgres
sys-deps:
- libgeos-dev
- os: windows-latest
backend:
name: postgres
title: PostgreSQL + Torch
extras:
- postgres
- geospatial
additional_deps:
- torch
services:
- postgres
sys-deps:
- libgeos-dev
- os: windows-latest
backend:
name: impala
title: Impala
extras:
- impala
services:
- impala
- kudu
sys-deps:
- cmake
- ninja-build
# - os: windows-latest
# backend:
# name: mssql
# title: MS SQL Server
# extras:
# - mssql
# services:
# - mssql
# sys-deps:
# - freetds-dev
# - unixodbc-dev
# - tdsodbc
- os: windows-latest
backend:
name: trino
title: Trino
services:
- trino
extras:
- trino
- os: windows-latest
backend:
name: druid
title: Druid
extras:
- druid
services:
- druid
# - os: windows-latest
# backend:
# name: oracle
# title: Oracle
# serial: true
# extras:
# - oracle
# services:
# - oracle
# - os: windows-latest
# backend:
# name: flink
# title: Flink
# serial: true
# extras:
# - flink
# services:
# - flink
# - python-version: "3.11"
# backend:
# name: flink
# title: Flink
# serial: true
# extras:
# - flink
# services:
# - flink
# - os: windows-latest
# backend:
# name: exasol
# title: Exasol
# serial: true
# extras:
# - exasol
# services:
# - exasol
# - os: windows-latest
# backend:
# name: risingwave
# title: Risingwave
# services:
# - risingwave
# extras:
# - risingwave
steps:
- name: update and install system dependencies
if: matrix.os == 'ubuntu-latest' && matrix.backend.sys-deps != null
run: |
set -euo pipefail
sudo apt-get update -qq -y
sudo apt-get install -qq -y build-essential ${{ join(matrix.backend.sys-deps, ' ') }}
- name: install sqlite
if: matrix.os == 'windows-latest' && matrix.backend.name == 'sqlite'
run: choco install sqlite
- name: checkout
uses: actions/checkout@v4
- uses: extractions/setup-just@v1
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: download backend data
run: just download-data
- name: start services
if: matrix.backend.services != null
run: docker compose up --wait ${{ join(matrix.backend.services, ' ') }}
- name: install poetry
run: pipx install 'poetry==1.7.1'
- name: install python
uses: actions/setup-python@v5
id: install_python
with:
python-version: ${{ matrix.python-version }}
cache: poetry
- name: install ibis
run: poetry install --without dev --without docs --extras "${{ join(matrix.backend.extras, ' ') }}"
- name: install deps for broken avro-python setup
if: matrix.backend.name == 'flink'
run: poetry run pip install wheel
- name: install other deps
if: matrix.backend.additional_deps != null
run: poetry run pip install ${{ join(matrix.backend.additional_deps, ' ') }}
- name: show installed deps
run: poetry run pip list
- name: "run parallel tests: ${{ matrix.backend.name }}"
if: true # ${{ !matrix.backend.serial }}
run: just ci-check -m ${{ matrix.backend.name }} --numprocesses auto --dist=loadgroup
env:
IBIS_TEST_IMPALA_HOST: localhost
IBIS_TEST_IMPALA_PORT: 21050
IBIS_EXAMPLES_DATA: ${{ runner.temp }}/examples-${{ matrix.backend.name }}-${{ matrix.os }}-${{ steps.install_python.outputs.python-version }}
# FIXME(deepyaman): If some backend-specific test, in test_ddl.py,
# executes before common tests, they will fail with:
# org.apache.flink.table.api.ValidationException: Table `default_catalog`.`default_database`.`functional_alltypes` was not found.
# Therefore, we run backend-specific tests second to avoid this.
# - name: "run serial tests: ${{ matrix.backend.name }}"
# if: matrix.backend.serial && matrix.backend.name == 'flink'
# run: |
# just ci-check -m ${{ matrix.backend.name }} ibis/backends/tests
# just ci-check -m ${{ matrix.backend.name }} ibis/backends/flink/tests
# env:
# IBIS_EXAMPLES_DATA: ${{ runner.temp }}/examples-${{ matrix.backend.name }}-${{ matrix.os }}-${{ steps.install_python.outputs.python-version }}
# FLINK_REMOTE_CLUSTER_ADDR: localhost
# FLINK_REMOTE_CLUSTER_PORT: "8081"
#
# - name: "run serial tests: ${{ matrix.backend.name }}"
# if: matrix.backend.serial && matrix.backend.name != 'flink'
# run: just ci-check -m ${{ matrix.backend.name }}
# env:
# IBIS_EXAMPLES_DATA: ${{ runner.temp }}/examples-${{ matrix.backend.name }}-${{ matrix.os }}-${{ steps.install_python.outputs.python-version }}
- name: check that no untracked files were produced
shell: bash
run: git checkout poetry.lock pyproject.toml && ! git status --porcelain | tee /dev/stderr | grep .
- name: upload code coverage
if: success()
continue-on-error: true
uses: codecov/codecov-action@v4
with:
flags: backend,${{ matrix.backend.name }},${{ runner.os }},python-${{ steps.install_python.outputs.python-version }}
- name: Show docker compose logs on fail
if: matrix.backend.services != null && failure()
run: docker compose logs
test_backends_min_version:
name: ${{ matrix.backend.title }} Min Version ${{ matrix.os }} python-${{ matrix.python-version }}
runs-on: ${{ matrix.os }}
env:
SQLALCHEMY_WARN_20: "1"
strategy:
fail-fast: false
matrix:
os:
- ubuntu-latest
- windows-latest
python-version:
- "3.9"
- "3.11"
backend:
# - name: dask
# title: Dask
# deps:
# - "dask[array,dataframe]@2022.9.1"
# - "[email protected]"
# extras:
# - dask
- name: postgres
title: PostgreSQL
deps:
- "Shapely@2"
services:
- postgres
extras:
- postgres
- geospatial
exclude:
- os: windows-latest
backend:
name: postgres
title: PostgreSQL
deps:
- "Shapely@2"
services:
- postgres
extras:
- postgres
- geospatial
- python-version: "3.11"
backend:
name: postgres
title: PostgreSQL
deps:
- "Shapely@2"
services:
- postgres
extras:
- postgres
- geospatial
steps:
- name: checkout
uses: actions/checkout@v4
- name: install libgeos for shapely
if: matrix.backend.name == 'postgres'
run: |
sudo apt-get update -y -qq
sudo apt-get install -qq -y build-essential libgeos-dev
- uses: extractions/setup-just@v1
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: download backend data
run: just download-data
- name: start services
if: matrix.backend.services != null
run: docker compose up --wait ${{ join(matrix.backend.services, ' ') }}
- name: install python
uses: actions/setup-python@v5
id: install_python
with:
python-version: ${{ matrix.python-version }}
- name: install poetry
run: python -m pip install --upgrade pip 'poetry==1.7.1'
- name: remove lonboard
# it requires a version of pandas that min versions are not compatible with
run: poetry remove lonboard
- name: install minimum versions
run: poetry add --lock --optional ${{ join(matrix.backend.deps, ' ') }}
- name: checkout the lock file
run: git checkout poetry.lock
- name: lock with no updates
# poetry add is aggressive and will update other dependencies like
# numpy and pandas so we keep the pyproject.toml edits and then relock
# without updating anything except the requested versions
run: poetry lock --no-update
- name: install ibis
run: poetry install --without dev --without docs --extras "${{ join(matrix.backend.extras, ' ') }}"
- name: run tests
run: just ci-check -m ${{ matrix.backend.name }} --numprocesses auto --dist=loadgroup
- name: check that no untracked files were produced
shell: bash
run: git checkout poetry.lock pyproject.toml && ! git status --porcelain | tee /dev/stderr | grep .
- name: upload code coverage
if: success()
uses: codecov/codecov-action@v4
with:
flags: backend,${{ matrix.backend.name }},${{ runner.os }},python-${{ steps.install_python.outputs.python-version }}
- name: Show docker compose logs on fail
if: matrix.backend.services != null && failure()
run: docker compose logs
test_pyspark:
name: PySpark ${{ matrix.pyspark-version }} ubuntu-latest python-${{ matrix.python-version }}
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
include:
- name: pyspark-3.3
python-version: "3.9"
pyspark-version: 3.3
deps:
- "'pandas@<2'"
- "'numpy@<1.24'"
- name: pyspark-3.5
python-version: "3.11"
pyspark-version: 3.5
deps:
- "'pandas@>2'"
- "'numpy@>1.24'"
steps:
- name: checkout
uses: actions/checkout@v4
- uses: actions/setup-java@v4
with:
distribution: microsoft
java-version: 17
- uses: extractions/setup-just@v1
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: download backend data
run: just download-data
- name: install python
uses: actions/setup-python@v5
id: install_python
with:
python-version: ${{ matrix.python-version }}
- name: install poetry
run: python -m pip install --upgrade pip 'poetry==1.7.1'
- name: remove lonboard
# it requires a version of pandas that pyspark is not compatible with
run: poetry remove lonboard
- name: install exact versions of pyspark, pandas and numpy
run: poetry add --lock ${{ join(matrix.deps, ' ') }}
- name: checkout the lock file
run: git checkout poetry.lock
- name: lock with no updates
# poetry add is aggressive and will update other dependencies like
# numpy and pandas so we keep the pyproject.toml edits and then relock
# without updating anything except the requested versions
run: poetry lock --no-update
- name: install ibis
run: poetry install --without dev --without docs --extras pyspark
- name: run tests
run: just ci-check -m pyspark
- name: check that no untracked files were produced
shell: bash
run: git checkout poetry.lock pyproject.toml && ! git status --porcelain | tee /dev/stderr | grep .
- name: upload code coverage
# only upload coverage for jobs that aren't mostly xfails
if: success() && matrix.python-version != '3.11'
uses: codecov/codecov-action@v4
with:
flags: backend,pyspark,${{ runner.os }},python-${{ steps.install_python.outputs.python-version }}
# gen_lockfile_sqlalchemy2:
# name: Generate Poetry Lockfile for SQLAlchemy 2
# runs-on: ubuntu-latest
# steps:
# - name: checkout
# uses: actions/checkout@v4
#
# - name: install python
# uses: actions/setup-python@v5
# with:
# python-version: "3.11"
#
# - run: python -m pip install --upgrade pip 'poetry==1.7.1'
#
# - name: remove deps that are not compatible with sqlalchemy 2
# run: poetry remove sqlalchemy-exasol
#
# - name: add sqlalchemy 2
# run: poetry add --lock --optional 'sqlalchemy>=2,<3'
#
# - name: checkout the lock file
# run: git checkout poetry.lock
#
# - name: lock with no updates
# # poetry add is aggressive and will update other dependencies like
# # numpy and pandas so we keep the pyproject.toml edits and then relock
# # without updating anything except the requested versions
# run: poetry lock --no-update
#
# - name: check the sqlalchemy version
# run: poetry show sqlalchemy --no-ansi | grep version | cut -d ':' -f2- | sed 's/ //g' | grep -P '^2\.'
#
# - name: upload deps file
# uses: actions/upload-artifact@v3
# with:
# name: deps
# path: |
# pyproject.toml
# poetry.lock
# test_backends_sqlalchemy2:
# name: SQLAlchemy 2 ${{ matrix.backend.title }} ${{ matrix.os }} python-${{ matrix.python-version }}
# runs-on: ${{ matrix.os }}
# needs:
# - gen_lockfile_sqlalchemy2
# env:
# ODBCSYSINI: "${{ github.workspace }}/.odbc"
# strategy:
# fail-fast: false
# matrix:
# os:
# - ubuntu-latest
# python-version:
# - "3.11"
# backend:
# - name: mssql
# title: MS SQL Server
# services:
# - mssql
# extras:
# - mssql
# sys-deps:
# - freetds-dev
# - unixodbc-dev
# - tdsodbc
# - name: sqlite
# title: SQLite
# extras:
# - sqlite
# - name: oracle
# title: Oracle
# serial: true
# extras:
# - oracle
# services:
# - oracle
# steps:
# - name: checkout
# uses: actions/checkout@v4
#
# - name: update and install system dependencies
# if: matrix.backend.sys-deps != null
# run: |
# set -euo pipefail
#
# sudo apt-get update -qq -y
# sudo apt-get install -qq -y build-essential ${{ join(matrix.backend.sys-deps, ' ') }}
#
# - name: setup odbc for mssql
# if: ${{ matrix.backend.name == 'mssql' }}
# run: |
# mkdir -p "$ODBCSYSINI"
#
# {
# echo '[FreeTDS]'
# echo "Driver = libtdsodbc.so"
# } > "$ODBCSYSINI/odbcinst.ini"
#
# - uses: extractions/setup-just@v1
# env:
# GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
#
# - name: download backend data
# run: just download-data
#
# - name: start services
# if: matrix.backend.services != null
# run: docker compose up --wait ${{ join(matrix.backend.services, ' ') }}
#
# - name: install python
# uses: actions/setup-python@v5
# id: install_python
# with:
# python-version: ${{ matrix.python-version }}
#
# - name: download poetry lockfile
# uses: actions/download-artifact@v3
# with:
# name: deps
# path: deps
#
# - name: pull out lockfile
# run: |
# set -euo pipefail
#
# mv -f deps/* .
# rm -r deps
#
# - uses: syphar/restore-virtualenv@v1
# with:
# requirement_files: poetry.lock
# custom_cache_key_element: ${{ matrix.backend.name }}-${{ steps.install_python.outputs.python-version }}
#
# - uses: syphar/restore-pip-download-cache@v1
# with:
# requirement_files: poetry.lock
# custom_cache_key_element: ${{ steps.install_python.outputs.python-version }}
#
# - name: install poetry
# run: python -m pip install --upgrade pip 'poetry==1.7.1'
#
# - name: install ibis
# run: poetry install --without dev --without docs --extras "${{ join(matrix.backend.extras, ' ') }}"
#
# - name: run tests
# run: just ci-check -m ${{ matrix.backend.name }} --numprocesses auto --dist=loadgroup
#
# - name: check that no untracked files were produced
# shell: bash
# run: git checkout poetry.lock pyproject.toml && ! git status --porcelain | tee /dev/stderr | grep .
#
# - name: upload code coverage
# if: success()
# uses: codecov/codecov-action@v4
# with:
# flags: backend,${{ matrix.backend.name }},${{ runner.os }},python-${{ steps.install_python.outputs.python-version }}
backends:
# this job exists so that we can use a single job from this workflow to gate merging
runs-on: ubuntu-latest
needs:
# - test_backends_min_version
- test_backends
# - test_backends_sqlalchemy2
- test_pyspark
steps:
- run: exit 0