Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Methylation-aware structural variant calling #40

Open
bounlu opened this issue Jul 17, 2023 · 2 comments
Open

Methylation-aware structural variant calling #40

bounlu opened this issue Jul 17, 2023 · 2 comments
Assignees
@jamorrison

Comments

@bounlu
Copy link

bounlu commented Jul 17, 2023

Hi,

Does structural variant calling suggested here also work for targeted methylseq data?

Also, do you know of any tool/pipeline for methylation-aware CNV and fusion calling from WGBS/targeted methylseq data?
@jamorrison
Copy link

Hi @bounlu,

Tagging @biobenkj. He should be able to better answer both of your questions.

Cheers,
Jacob

@bounlu
Copy link
Author

bounlu commented Nov 7, 2023

Hi @biobenkj. Any thoughts on this?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@jamorrison jamorrison

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@jamorrison @bounlu