mkdocs.yml

site_name: Picea documentation
repo_url: https://github.com/holmrenser/picea
plugins:
  - search
  - mkdocstrings:
      default_handler: python
      handlers:
        python:
          rendering:
            show_root_heading: yes
            show_root_full_path: no
            show_category_heading: yes
            show_if_no_docstring: yes
            show_signature_annotations: yes
      watch:
        - picea
  - mkdocs-jupyter:
      execute: True
extra_css:
  - css/material.css
markdown_extensions:
  - admonition
  - codehilite
  - toc:
      permalink: true
theme:
  name: material
  features:
    - navigation.tabs
    - navigation.top
  palette:
    primary: white
    accent: deep orange
  font:
    text: Helvetica

nav:
  - Overview:
      - Overview: index.md
      - License: LICENSE.md
      - Contributing: CONTRIBUTING.md
  - Examples:
      - Tree: examples/tree.ipynb
      - Ontology: examples/ontology.ipynb
      - Sequence annotation: examples/sequence_annotation.ipynb
      - Sequence interval: examples/sequence_interval.ipynb
  - API:
      - Sequence: api/sequence.md
      - Tree: api/tree.md
      - Ontology: api/ontology.md